CircRNA Information

General Information
circRNA Basic Information
CircID chrX:49071315|49071462
Strand +
CircType exon
Host Gene ENSG00000243279.3;
Algorism CIRI2;
Sequence CCCACCCTACCTTCCAACCCAGGTCAAGACATTGCCAAATCTTGAACTCAGAACCCAAGTGTTCCATGCCCCTGTGTGGATGGAGTCGGGTATCCTGACTGTTGGACCCCTGGTCCAGGTGATCCCGACCCTCACCAGTCCCATTTGC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chrX:49071315|49071462 hsa-miR-96-5p 0 0 1
chrX:49071315|49071462 hsa-miR-96-3p 0 0 1
chrX:49071315|49071462 hsa-miR-192-5p 0 0 1
chrX:49071315|49071462 hsa-miR-192-3p 0 0 1
chrX:49071315|49071462 hsa-miR-182-5p 0 0 1
chrX:49071315|49071462 hsa-miR-182-3p 0 0 1
chrX:49071315|49071462 hsa-miR-212-5p 0 0 1
chrX:49071315|49071462 hsa-miR-212-3p 0 0 1
chrX:49071315|49071462 hsa-miR-215-5p 0 0 1
chrX:49071315|49071462 hsa-miR-215-3p 0 0 1
chrX:49071315|49071462 hsa-miR-132-5p 0 0 1
chrX:49071315|49071462 hsa-miR-132-3p 0 0 1
chrX:49071315|49071462 hsa-miR-431-5p 0 0 1
chrX:49071315|49071462 hsa-miR-431-3p 0 0 1
chrX:49071315|49071462 hsa-miR-619-5p 0 0 1
chrX:49071315|49071462 hsa-miR-619-3p 0 0 1
chrX:49071315|49071462 hsa-miR-631 0 0 1
chrX:49071315|49071462 hsa-miR-1271-5p 0 0 1
chrX:49071315|49071462 hsa-miR-1271-3p 0 0 1
chrX:49071315|49071462 hsa-miR-615-5p 0 0 1
chrX:49071315|49071462 hsa-miR-886-5p 0 0 1
chrX:49071315|49071462 hsa-miR-220c 0 0 1
chrX:49071315|49071462 hsa-miR-762 1 0 0
chrX:49071315|49071462 hsa-miR-378c 0 1 0
chrX:49071315|49071462 hsa-miR-4260 1 0 0
chrX:49071315|49071462 hsa-miR-3661 0 1 0
chrX:49071315|49071462 hsa-miR-4425 0 1 0
chrX:49071315|49071462 hsa-miR-4507 1 1 0
chrX:49071315|49071462 hsa-miR-378i 0 1 0
chrX:49071315|49071462 hsa-miR-1587 1 0 0
chrX:49071315|49071462 hsa-miR-4688 1 1 0
chrX:49071315|49071462 hsa-miR-6085 1 0 0
chrX:49071315|49071462 hsa-miR-8052 1 1 0
chrX:49071315|49071462 hsa-miR-134-5p 1 0 0
chrX:49071315|49071462 hsa-miR-92a-1-5p 0 1 0
chrX:49071315|49071462 hsa-miR-6728-5p 1 0 0
chrX:49071315|49071462 hsa-miR-6793-5p 1 1 0
chrX:49071315|49071462 hsa-miR-6798-5p 1 0 0
chrX:49071315|49071462 hsa-miR-1226-5p 1 0 0
chrX:49071315|49071462 hsa-miR-193b-5p 1 0 0
chrX:49071315|49071462 hsa-miR-6771-5p 1 0 0
chrX:49071315|49071462 hsa-miR-3690 0 1 0
chrX:49071315|49071462 hsa-miR-6789-5p 1 0 0
chrX:49071315|49071462 hsa-miR-6742-3p 0 1 0
chrX:49071315|49071462 hsa-miR-941 0 1 0
chrX:49071315|49071462 hsa-miR-4776-5p 0 1 0
chrX:49071315|49071462 hsa-miR-34a-5p 1 1 0
chrX:49071315|49071462 hsa-miR-4763-3p 1 0 0
chrX:49071315|49071462 hsa-miR-6775-5p 1 0 0
chrX:49071315|49071462 hsa-miR-6743-5p 1 1 0
chrX:49071315|49071462 hsa-miR-6803-5p 1 0 0
chrX:49071315|49071462 hsa-miR-6813-5p 1 0 0
chrX:49071315|49071462 hsa-miR-7107-5p 1 0 0
chrX:49071315|49071462 hsa-miR-3620-5p 1 0 0
chrX:49071315|49071462 hsa-miR-328-5p 1 0 0
chrX:49071315|49071462 hsa-miR-6738-5p 1 0 0
chrX:49071315|49071462 hsa-miR-6846-5p 1 0 0
chrX:49071315|49071462 hsa-miR-6848-5p 1 0 0
chrX:49071315|49071462 hsa-miR-3940-5p 0 1 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chrX:49071315|49071462
ORF Type ORF1
Protein Length 39
Nucleotide Length 117
Protein Sequence MPNLELRTQVFHAPVWMESGILTVGPLVQVIPTLTSPIC
Nucleotide Sequence TTGCCAAATCTTGAACTCAGAACCCAAGTGTTCCATGCCCCTGTGTGGATGGAGTCGGGTATCCTGACTGTTGGACCCCTGGTCCAGGTGATCCCGACCCTCACCAGTCCCATTTGC
CircID chrX:49071315|49071462
ORF Type ORF2
Protein Length 39
Nucleotide Length 117
Protein Sequence MDQGSNSQDTRLHPHRGMEHLGSEFKIWQCLDLGWKVGW
Nucleotide Sequence CTGGACCAGGGGTCCAACAGTCAGGATACCCGACTCCATCCACACAGGGGCATGGAACACTTGGGTTCTGAGTTCAAGATTTGGCAATGTCTTGACCTGGGTTGGAAGGTAGGGTGG
CircID chrX:49071315|49071462
ORF Type ORF3
Protein Length 45
Nucleotide Length 138
Protein Sequence MGLVRVGITWTRGPTVRIPDSIHTGAWNTWVLSSRFGNVLTWVGR
Nucleotide Sequence ATGGGACTGGTGAGGGTCGGGATCACCTGGACCAGGGGTCCAACAGTCAGGATACCCGACTCCATCCACACAGGGGCATGGAACACTTGGGTTCTGAGTTCAAGATTTGGCAATGTCTTGACCTGGGTTGGAAGGTAG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab