CircRNA Information

General Information
circRNA Basic Information
CircID chrX:49071441|49071640
Strand -
CircType exon
Host Gene ENSG00000243279.3;
Algorism CIRI2;
Sequence CTGGGTTGGAAGGTAGGGTGGGGTCTGGAAAAGCTTTGGTCCAGGGTTCAAGATTTGAGAGTGCCTTGCCCCAGGCCCCAGTTTGGGGATGAGCATGGAGAAGGGTGGATGGGAGTGTCTCTGGGTTCACAATTTGAAATTGGCCATGGATGCTCTGGCCTGAAGCCAGTTTTGGGGCTGGATGTAGGTGGCTCTTGGTC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chrX:49071441|49071640 hsa-miR-136-5p 0 0 1
chrX:49071441|49071640 hsa-miR-136-3p 0 0 1
chrX:49071441|49071640 hsa-miR-335-5p 0 0 1
chrX:49071441|49071640 hsa-miR-335-3p 0 0 1
chrX:49071441|49071640 hsa-miR-506-5p 0 0 1
chrX:49071441|49071640 hsa-miR-506-3p 0 0 1
chrX:49071441|49071640 hsa-miR-607 0 0 1
chrX:49071441|49071640 hsa-miR-661 0 0 1
chrX:49071441|49071640 hsa-miR-1323 0 0 1
chrX:49071441|49071640 hsa-miR-892b 0 0 1
chrX:49071441|49071640 hsa-miR-548e-5p 0 0 1
chrX:49071441|49071640 hsa-miR-548e-3p 0 0 1
chrX:49071441|49071640 hsa-miR-548o-3p 0 0 1
chrX:49071441|49071640 hsa-miR-548o 0 0 1
chrX:49071441|49071640 hsa-miR-486-3p 0 0 1
chrX:49071441|49071640 hsa-miR-525-5p 0 0 1
chrX:49071441|49071640 hsa-miR-520a-5p 0 0 1
chrX:49071441|49071640 hsa-miR-515-5p 0 0 1
chrX:49071441|49071640 hsa-miR-548a-3p 0 0 1
chrX:49071441|49071640 hsa-miR-371-5p 0 0 1
chrX:49071441|49071640 hsa-miR-548f 0 0 1
chrX:49071441|49071640 hsa-miR-124 0 0 1
chrX:49071441|49071640 hsa-miR-1470 1 0 0
chrX:49071441|49071640 hsa-miR-718 1 0 0
chrX:49071441|49071640 hsa-miR-2861 0 1 0
chrX:49071441|49071640 hsa-miR-8089 1 0 0
chrX:49071441|49071640 hsa-miR-7155-5p 0 1 0
chrX:49071441|49071640 hsa-miR-1972 0 1 0
chrX:49071441|49071640 hsa-miR-6720-5p 0 1 0
chrX:49071441|49071640 hsa-miR-6832-3p 1 0 0
chrX:49071441|49071640 hsa-miR-6845-3p 1 0 0
chrX:49071441|49071640 hsa-miR-877-3p 1 0 0
chrX:49071441|49071640 hsa-miR-6728-3p 1 0 0
chrX:49071441|49071640 hsa-miR-1343-3p 1 1 0
chrX:49071441|49071640 hsa-miR-939-3p 1 0 0
chrX:49071441|49071640 hsa-miR-4793-5p 1 0 0
chrX:49071441|49071640 hsa-miR-1247-5p 1 0 0
chrX:49071441|49071640 hsa-miR-7161-3p 1 1 0
chrX:49071441|49071640 hsa-miR-7111-3p 1 0 0
chrX:49071441|49071640 hsa-miR-4638-3p 1 0 0
chrX:49071441|49071640 hsa-miR-4667-3p 1 0 0
chrX:49071441|49071640 hsa-miR-3690 0 1 0
chrX:49071441|49071640 hsa-miR-6870-3p 0 1 0
chrX:49071441|49071640 hsa-miR-1237-3p 1 0 0
chrX:49071441|49071640 hsa-miR-3180-5p 1 1 0
chrX:49071441|49071640 hsa-miR-4758-3p 1 0 0
chrX:49071441|49071640 hsa-miR-4632-3p 1 0 0
chrX:49071441|49071640 hsa-miR-6886-3p 1 0 0
chrX:49071441|49071640 hsa-miR-5088-3p 1 1 0
chrX:49071441|49071640 hsa-miR-6501-3p 0 1 0
chrX:49071441|49071640 hsa-miR-6777-3p 1 0 0
chrX:49071441|49071640 hsa-miR-6802-3p 1 0 0
chrX:49071441|49071640 hsa-miR-3620-3p 1 1 0
chrX:49071441|49071640 hsa-miR-1249-3p 1 0 0
chrX:49071441|49071640 hsa-miR-3162-3p 0 1 0
chrX:49071441|49071640 hsa-miR-5581-3p 0 1 0
chrX:49071441|49071640 hsa-miR-3127-3p 1 0 0
chrX:49071441|49071640 hsa-miR-6862-3p 1 1 0
chrX:49071441|49071640 hsa-miR-483-3p 1 1 0
chrX:49071441|49071640 hsa-miR-6512-3p 0 1 0
chrX:49071441|49071640 hsa-miR-4769-3p 1 0 0
chrX:49071441|49071640 hsa-miR-4724-3p 0 1 0
chrX:49071441|49071640 hsa-miR-549a-5p 0 1 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chrX:49071441|49071640
ORF Type ORF1
Protein Length 66
Nucleotide Length 198
Protein Sequence LGWKVGWGLEKLWSRVQDLRVPCPRPQFGDEHGEGWMGVSLGSQFEIGHGCSGLKPVLGLDVGGSW
Nucleotide Sequence CTGGGTTGGAAGGTAGGGTGGGGTCTGGAAAAGCTTTGGTCCAGGGTTCAAGATTTGAGAGTGCCTTGCCCCAGGCCCCAGTTTGGGGATGAGCATGGAGAAGGGTGGATGGGAGTGTCTCTGGGTTCACAATTTGAAATTGGCCATGGATGCTCTGGCCTGAAGCCAGTTTTGGGGCTGGATGTAGGTGGCTCTTGG
CircID chrX:49071441|49071640
ORF Type ORF2
Protein Length 26
Nucleotide Length 81
Protein Sequence MGMSMEKGGWECLWVHNLKLAMDALA
Nucleotide Sequence TTGGGGATGAGCATGGAGAAGGGTGGATGGGAGTGTCTCTGGGTTCACAATTTGAAATTGGCCATGGATGCTCTGGCCTGA
CircID chrX:49071441|49071640
ORF Type ORF3
Protein Length 28
Nucleotide Length 87
Protein Sequence MEGRVGSGKALVQGSRFESALPQAPVWG
Nucleotide Sequence TTGGAAGGTAGGGTGGGGTCTGGAAAAGCTTTGGTCCAGGGTTCAAGATTTGAGAGTGCCTTGCCCCAGGCCCCAGTTTGGGGATGA
CircID chrX:49071441|49071640
ORF Type ORF4
Protein Length 56
Nucleotide Length 168
Protein Sequence MASGQSIHGQFQIVNPETLPSTLLHAHPQTGAWGKALSNLEPWTKAFPDPTLPSNP
Nucleotide Sequence CTGGCTTCAGGCCAGAGCATCCATGGCCAATTTCAAATTGTGAACCCAGAGACACTCCCATCCACCCTTCTCCATGCTCATCCCCAAACTGGGGCCTGGGGCAAGGCACTCTCAAATCTTGAACCCTGGACCAAAGCTTTTCCAGACCCCACCCTACCTTCCAACCCA
CircID chrX:49071441|49071640
ORF Type ORF5
Protein Length 32
Nucleotide Length 96
Protein Sequence MLIPKLGPGARHSQILNPGPKLFQTPPYLPTQ
Nucleotide Sequence ATGCTCATCCCCAAACTGGGGCCTGGGGCAAGGCACTCTCAAATCTTGAACCCTGGACCAAAGCTTTTCCAGACCCCACCCTACCTTCCAACCCAG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab