CircRNA Information

General Information
circRNA Basic Information
CircID chrX:49180568|49180676
Strand -
CircType exon
Host Gene
Algorism CIRI2;
Sequence CACTCTCTCTTCCTGGAAACACTTTCTTCCCTTGGCTTCCAGGACACCACACAGTCCAGGTTTTCCTTCCACCTTATTGGCTGCTCCTTCTTTGTCCCTGTTTTGGCTC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chrX:49180568|49180676 hsa-miR-18a-5p 0 0 1
chrX:49180568|49180676 hsa-miR-18a-3p 0 0 1
chrX:49180568|49180676 hsa-miR-422a 0 0 1
chrX:49180568|49180676 hsa-miR-18b-5p 0 0 1
chrX:49180568|49180676 hsa-miR-18b-3p 0 0 1
chrX:49180568|49180676 hsa-miR-619-5p 0 0 1
chrX:49180568|49180676 hsa-miR-619-3p 0 0 1
chrX:49180568|49180676 hsa-miR-892a 0 0 1
chrX:49180568|49180676 hsa-miR-665 0 0 1
chrX:49180568|49180676 hsa-miR-1288-5p 0 0 1
chrX:49180568|49180676 hsa-miR-1288-3p 0 0 1
chrX:49180568|49180676 hsa-miR-1252-5p 0 0 1
chrX:49180568|49180676 hsa-miR-1252-3p 0 0 1
chrX:49180568|49180676 hsa-miR-671-5p 1 1 1
chrX:49180568|49180676 hsa-miR-490-3p 0 0 1
chrX:49180568|49180676 hsa-miR-378 0 0 1
chrX:49180568|49180676 hsa-miR-644 0 0 1
chrX:49180568|49180676 hsa-miR-1269 0 0 1
chrX:49180568|49180676 hsa-miR-147 0 0 1
chrX:49180568|49180676 hsa-miR-658 1 0 0
chrX:49180568|49180676 hsa-miR-1269a 0 1 0
chrX:49180568|49180676 hsa-miR-3122 1 0 0
chrX:49180568|49180676 hsa-miR-378c 0 1 0
chrX:49180568|49180676 hsa-miR-4270 1 0 0
chrX:49180568|49180676 hsa-miR-3911 1 0 0
chrX:49180568|49180676 hsa-miR-378e 0 1 0
chrX:49180568|49180676 hsa-miR-378h 0 1 0
chrX:49180568|49180676 hsa-miR-4510 1 0 0
chrX:49180568|49180676 hsa-miR-4533 1 1 0
chrX:49180568|49180676 hsa-miR-4669 1 0 0
chrX:49180568|49180676 hsa-miR-4688 1 0 0
chrX:49180568|49180676 hsa-miR-4739 1 0 0
chrX:49180568|49180676 hsa-miR-5090 1 0 0
chrX:49180568|49180676 hsa-miR-6090 1 0 0
chrX:49180568|49180676 hsa-miR-6127 1 0 0
chrX:49180568|49180676 hsa-miR-6745 1 1 0
chrX:49180568|49180676 hsa-miR-7974 0 1 0
chrX:49180568|49180676 hsa-miR-9500 0 1 0
chrX:49180568|49180676 hsa-miR-12118 1 0 0
chrX:49180568|49180676 hsa-miR-211-3p 1 1 0
chrX:49180568|49180676 hsa-miR-6765-5p 1 0 0
chrX:49180568|49180676 hsa-miR-7106-5p 1 0 0
chrX:49180568|49180676 hsa-miR-6510-5p 1 1 0
chrX:49180568|49180676 hsa-miR-8071 1 0 0
chrX:49180568|49180676 hsa-miR-7851-3p 1 0 0
chrX:49180568|49180676 hsa-miR-6730-5p 1 0 0
chrX:49180568|49180676 hsa-miR-7845-5p 1 1 0
chrX:49180568|49180676 hsa-miR-6748-5p 1 0 0
chrX:49180568|49180676 hsa-miR-3190-3p 1 1 0
chrX:49180568|49180676 hsa-miR-6827-5p 1 0 0
chrX:49180568|49180676 hsa-miR-486-3p 1 0 0
chrX:49180568|49180676 hsa-miR-6760-5p 1 0 0
chrX:49180568|49180676 hsa-miR-5006-5p 1 0 0
chrX:49180568|49180676 hsa-miR-149-3p 1 0 0
chrX:49180568|49180676 hsa-miR-6830-5p 1 1 0
chrX:49180568|49180676 hsa-miR-6824-5p 1 0 0
chrX:49180568|49180676 hsa-miR-7156-3p 1 0 0
chrX:49180568|49180676 hsa-miR-423-5p 1 0 0
chrX:49180568|49180676 hsa-miR-4773 0 1 0
chrX:49180568|49180676 hsa-miR-7113-5p 0 1 0
chrX:49180568|49180676 hsa-miR-7844-5p 1 1 0
chrX:49180568|49180676 hsa-miR-6778-5p 1 0 0
chrX:49180568|49180676 hsa-miR-6743-5p 1 1 0
chrX:49180568|49180676 hsa-miR-1249-5p 1 0 0
chrX:49180568|49180676 hsa-miR-6797-5p 1 0 0
chrX:49180568|49180676 hsa-miR-7111-5p 1 0 0
chrX:49180568|49180676 hsa-miR-6780b-5p 1 0 0
chrX:49180568|49180676 hsa-miR-4632-5p 1 0 0
chrX:49180568|49180676 hsa-miR-4726-5p 1 0 0
chrX:49180568|49180676 hsa-miR-4747-5p 1 0 0
chrX:49180568|49180676 hsa-miR-6876-5p 1 1 0
chrX:49180568|49180676 hsa-miR-378a-3p 0 1 0
chrX:49180568|49180676 hsa-miR-4716-3p 1 1 0
chrX:49180568|49180676 hsa-miR-378d 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chrX:49180568|49180676
ORF Type ORF1
Protein Length 32
Nucleotide Length 96
Protein Sequence METLSSLGFQDTTQSRFSFHLIGCSFFVPVLA
Nucleotide Sequence CTGGAAACACTTTCTTCCCTTGGCTTCCAGGACACCACACAGTCCAGGTTTTCCTTCCACCTTATTGGCTGCTCCTTCTTTGTCCCTGTTTTGGCT
CircID chrX:49180568|49180676
ORF Type ORF2
Protein Length 26
Nucleotide Length 78
Protein Sequence MASRTPHSPGFPSTLLAAPSLSLFWL
Nucleotide Sequence TTGGCTTCCAGGACACCACACAGTCCAGGTTTTCCTTCCACCTTATTGGCTGCTCCTTCTTTGTCCCTGTTTTGGCTC
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab