CircRNA Information

General Information
circRNA Basic Information
CircID chrX:49248424|49248719
Strand +
CircType exon
Host Gene ENSG00000101997.11;
Algorism CIRI2;
Sequence CTCCTCCTTCCTGCGGGCCTCTTCAGCAGCCGCCCGGACACTCTGGTGCAGTTCTTGGATCTCTGCCAGCCGTCGAGAAGATTCCAGCTGCCATGAGCCCACAGGCAGAAGACAGTGAGCAGAGCATAGGGATGGCCCCCTAGAGAGGGACCGAGCCTGCCCTGGCCCGCCCACAGCCCAGGGCCCCACTGCTTACCTCTCTGCAATCCTGCAGCTTTCGGAGGTGGCGGTACTCAGCGAGGAGTGGGACCCGGTGCTTCTCCCACTGACCCGCCAAGTGGATGACCCGCTGGGCA
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chrX:49248424|49248719 hsa-miR-320a-5p 0 0 1
chrX:49248424|49248719 hsa-miR-320a-3p 0 0 1
chrX:49248424|49248719 hsa-miR-484 0 1 1
chrX:49248424|49248719 hsa-miR-765 0 0 1
chrX:49248424|49248719 hsa-miR-942-5p 0 0 1
chrX:49248424|49248719 hsa-miR-942-3p 0 0 1
chrX:49248424|49248719 hsa-miR-1178-5p 0 0 1
chrX:49248424|49248719 hsa-miR-1178-3p 0 0 1
chrX:49248424|49248719 hsa-miR-1205 0 1 1
chrX:49248424|49248719 hsa-miR-1208 0 0 1
chrX:49248424|49248719 hsa-miR-1286 0 0 1
chrX:49248424|49248719 hsa-miR-1291 0 0 1
chrX:49248424|49248719 hsa-miR-1251-5p 0 0 1
chrX:49248424|49248719 hsa-miR-1251-3p 0 0 1
chrX:49248424|49248719 hsa-miR-423-3p 0 0 1
chrX:49248424|49248719 hsa-miR-885-3p 0 0 1
chrX:49248424|49248719 hsa-miR-767-5p 0 0 1
chrX:49248424|49248719 hsa-miR-1207-3p 0 0 1
chrX:49248424|49248719 hsa-miR-767-3p 0 0 1
chrX:49248424|49248719 hsa-miR-516a-5p 0 0 1
chrX:49248424|49248719 hsa-miR-320b 0 1 1
chrX:49248424|49248719 hsa-miR-320c 0 1 1
chrX:49248424|49248719 hsa-miR-483-3p 0 1 1
chrX:49248424|49248719 hsa-miR-320d 0 1 1
chrX:49248424|49248719 hsa-miR-642 0 0 1
chrX:49248424|49248719 hsa-miR-720 0 0 1
chrX:49248424|49248719 hsa-miR-663 0 0 1
chrX:49248424|49248719 hsa-miR-638 1 0 0
chrX:49248424|49248719 hsa-miR-663a 1 0 0
chrX:49248424|49248719 hsa-miR-657 1 1 0
chrX:49248424|49248719 hsa-miR-762 1 0 0
chrX:49248424|49248719 hsa-miR-760 1 1 0
chrX:49248424|49248719 hsa-miR-1231 0 1 0
chrX:49248424|49248719 hsa-miR-1538 1 0 0
chrX:49248424|49248719 hsa-miR-2861 1 0 0
chrX:49248424|49248719 hsa-miR-3183 0 1 0
chrX:49248424|49248719 hsa-miR-4296 0 1 0
chrX:49248424|49248719 hsa-miR-4322 1 1 0
chrX:49248424|49248719 hsa-miR-4265 1 1 0
chrX:49248424|49248719 hsa-miR-4278 0 1 0
chrX:49248424|49248719 hsa-miR-3621 0 1 0
chrX:49248424|49248719 hsa-miR-4437 0 1 0
chrX:49248424|49248719 hsa-miR-4498 1 0 0
chrX:49248424|49248719 hsa-miR-4507 1 0 0
chrX:49248424|49248719 hsa-miR-4516 0 1 0
chrX:49248424|49248719 hsa-miR-4533 0 1 0
chrX:49248424|49248719 hsa-miR-1587 1 1 0
chrX:49248424|49248719 hsa-miR-3960 1 0 0
chrX:49248424|49248719 hsa-miR-4651 1 0 0
chrX:49248424|49248719 hsa-miR-4656 1 0 0
chrX:49248424|49248719 hsa-miR-4669 1 1 0
chrX:49248424|49248719 hsa-miR-4674 1 0 0
chrX:49248424|49248719 hsa-miR-4675 0 1 0
chrX:49248424|49248719 hsa-miR-4710 1 0 0
chrX:49248424|49248719 hsa-miR-4734 1 0 0
chrX:49248424|49248719 hsa-miR-4739 1 1 0
chrX:49248424|49248719 hsa-miR-4741 1 1 0
chrX:49248424|49248719 hsa-miR-134-3p 0 1 0
chrX:49248424|49248719 hsa-miR-3194-3p 1 1 0
chrX:49248424|49248719 hsa-miR-6765-5p 1 0 0
chrX:49248424|49248719 hsa-miR-671-5p 1 0 0
chrX:49248424|49248719 hsa-miR-4687-3p 1 1 0
chrX:49248424|49248719 hsa-miR-4695-5p 1 0 0
chrX:49248424|49248719 hsa-miR-6727-5p 1 0 0
chrX:49248424|49248719 hsa-miR-6721-5p 0 1 0
chrX:49248424|49248719 hsa-miR-23b-5p 1 0 0
chrX:49248424|49248719 hsa-miR-3151-5p 0 1 0
chrX:49248424|49248719 hsa-miR-6793-5p 1 1 0
chrX:49248424|49248719 hsa-miR-3130-3p 0 1 0
chrX:49248424|49248719 hsa-miR-6728-3p 0 1 0
chrX:49248424|49248719 hsa-miR-5008-5p 0 1 0
chrX:49248424|49248719 hsa-miR-5006-5p 1 0 0
chrX:49248424|49248719 hsa-miR-6786-5p 1 0 0
chrX:49248424|49248719 hsa-miR-4640-5p 0 1 0
chrX:49248424|49248719 hsa-miR-30c-2-3p 0 1 0
chrX:49248424|49248719 hsa-miR-1228-5p 1 1 0
chrX:49248424|49248719 hsa-miR-3677-3p 1 0 0
chrX:49248424|49248719 hsa-miR-4446-3p 1 0 0
chrX:49248424|49248719 hsa-miR-3158-5p 0 1 0
chrX:49248424|49248719 hsa-miR-6886-5p 0 1 0
chrX:49248424|49248719 hsa-miR-194-3p 0 1 0
chrX:49248424|49248719 hsa-miR-6811-3p 0 1 0
chrX:49248424|49248719 hsa-miR-371a-3p 0 1 0
chrX:49248424|49248719 hsa-miR-6868-5p 0 1 0
chrX:49248424|49248719 hsa-miR-1914-5p 0 1 0
chrX:49248424|49248719 hsa-miR-6792-5p 0 1 0
chrX:49248424|49248719 hsa-miR-6738-3p 0 1 0
chrX:49248424|49248719 hsa-miR-6770-3p 0 1 0
chrX:49248424|49248719 hsa-miR-6883-3p 0 1 0
chrX:49248424|49248719 hsa-miR-4433a-5p 0 1 0
chrX:49248424|49248719 hsa-miR-1911-5p 1 1 0
chrX:49248424|49248719 hsa-miR-6847-3p 0 1 0
chrX:49248424|49248719 hsa-miR-10400-5p 1 0 0
chrX:49248424|49248719 hsa-miR-1233-5p 1 1 0
chrX:49248424|49248719 hsa-miR-4763-3p 1 0 0
chrX:49248424|49248719 hsa-miR-6769b-5p 1 1 0
chrX:49248424|49248719 hsa-miR-6816-5p 1 0 0
chrX:49248424|49248719 hsa-miR-6726-5p 1 0 0
chrX:49248424|49248719 hsa-miR-6756-5p 1 0 0
chrX:49248424|49248719 hsa-miR-6769a-5p 1 0 0
chrX:49248424|49248719 hsa-miR-6788-5p 0 1 0
chrX:49248424|49248719 hsa-miR-6879-5p 0 1 0
chrX:49248424|49248719 hsa-miR-3620-5p 1 1 0
chrX:49248424|49248719 hsa-miR-10396b-5p 1 0 0
chrX:49248424|49248719 hsa-miR-4632-5p 0 1 0
chrX:49248424|49248719 hsa-miR-4685-5p 1 0 0
chrX:49248424|49248719 hsa-miR-4726-5p 0 1 0
chrX:49248424|49248719 hsa-miR-4745-5p 1 0 0
chrX:49248424|49248719 hsa-miR-6846-5p 1 0 0
chrX:49248424|49248719 hsa-miR-6858-5p 1 0 0
chrX:49248424|49248719 hsa-miR-3940-5p 1 1 0
chrX:49248424|49248719 hsa-miR-6758-5p 0 1 0
chrX:49248424|49248719 hsa-miR-6856-5p 1 1 0
chrX:49248424|49248719 hsa-miR-7843-5p 0 1 0
chrX:49248424|49248719 hsa-miR-6876-5p 0 1 0
chrX:49248424|49248719 hsa-miR-6724-5p 1 0 0
chrX:49248424|49248719 hsa-miR-6791-5p 1 1 0
chrX:49248424|49248719 hsa-miR-6529-5p 0 1 0
chrX:49248424|49248719 hsa-miR-6805-3p 0 1 0
chrX:49248424|49248719 hsa-miR-6775-3p 0 1 0
chrX:49248424|49248719 hsa-miR-4723-3p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chrX:49248424|49248719
ORF Type ORF1
Protein Length 42
Nucleotide Length 129
Protein Sequence MPWPAHSPGPHCLPLCNPAAFGGGGTQRGVGPGASPTDPPSG
Nucleotide Sequence CTGCCCTGGCCCGCCCACAGCCCAGGGCCCCACTGCTTACCTCTCTGCAATCCTGCAGCTTTCGGAGGTGGCGGTACTCAGCGAGGAGTGGGACCCGGTGCTTCTCCCACTGACCCGCCAAGTGGATGA
CircID chrX:49248424|49248719
ORF Type ORF2
Protein Length 35
Nucleotide Length 108
Protein Sequence MRASSAAARTLWCSSWISASRREDSSCHEPTGRRQ
Nucleotide Sequence CTGCGGGCCTCTTCAGCAGCCGCCCGGACACTCTGGTGCAGTTCTTGGATCTCTGCCAGCCGTCGAGAAGATTCCAGCTGCCATGAGCCCACAGGCAGAAGACAGTGA
CircID chrX:49248424|49248719
ORF Type ORF3
Protein Length 29
Nucleotide Length 87
Protein Sequence MQLSEVAVLSEEWDPVLLPLTRQVDDPLG
Nucleotide Sequence CTGCAGCTTTCGGAGGTGGCGGTACTCAGCGAGGAGTGGGACCCGGTGCTTCTCCCACTGACCCGCCAAGTGGATGACCCGCTGGGC
CircID chrX:49248424|49248719
ORF Type ORF4
Protein Length 26
Nucleotide Length 81
Protein Sequence MPAVEKIPAAMSPQAEDSEQSIGMAP
Nucleotide Sequence CTGCCAGCCGTCGAGAAGATTCCAGCTGCCATGAGCCCACAGGCAGAAGACAGTGAGCAGAGCATAGGGATGGCCCCCTAG
CircID chrX:49248424|49248719
ORF Type ORF5
Protein Length 35
Nucleotide Length 108
Protein Sequence MARPQPRAPLLTSLQSCSFRRWRYSARSGTRCFSH
Nucleotide Sequence CTGGCCCGCCCACAGCCCAGGGCCCCACTGCTTACCTCTCTGCAATCCTGCAGCTTTCGGAGGTGGCGGTACTCAGCGAGGAGTGGGACCCGGTGCTTCTCCCACTGA
CircID chrX:49248424|49248719
ORF Type ORF6
Protein Length 68
Nucleotide Length 204
Protein Sequence MQRGKQWGPGLWAGQGRLGPSLGGHPYALLTVFCLWAHGSWNLLDGWQRSKNCTRVSGRLLKRPAGRR
Nucleotide Sequence TTGCAGAGAGGTAAGCAGTGGGGCCCTGGGCTGTGGGCGGGCCAGGGCAGGCTCGGTCCCTCTCTAGGGGGCCATCCCTATGCTCTGCTCACTGTCTTCTGCCTGTGGGCTCATGGCAGCTGGAATCTTCTCGACGGCTGGCAGAGATCCAAGAACTGCACCAGAGTGTCCGGGCGGCTGCTGAAGAGGCCCGCAGGAAGGAGG
CircID chrX:49248424|49248719
ORF Type ORF7
Protein Length 45
Nucleotide Length 138
Protein Sequence MAGQWEKHRVPLLAEYRHLRKLQDCREVSSGALGCGRARAGSVPL
Nucleotide Sequence TTGGCGGGTCAGTGGGAGAAGCACCGGGTCCCACTCCTCGCTGAGTACCGCCACCTCCGAAAGCTGCAGGATTGCAGAGAGGTAAGCAGTGGGGCCCTGGGCTGTGGGCGGGCCAGGGCAGGCTCGGTCCCTCTCTAG
CircID chrX:49248424|49248719
ORF Type ORF8
Protein Length 34
Nucleotide Length 105
Protein Sequence MLCSLSSACGLMAAGIFSTAGRDPRTAPECPGGC
Nucleotide Sequence ATGCTCTGCTCACTGTCTTCTGCCTGTGGGCTCATGGCAGCTGGAATCTTCTCGACGGCTGGCAGAGATCCAAGAACTGCACCAGAGTGTCCGGGCGGCTGCTGA
CircID chrX:49248424|49248719
ORF Type ORF9
Protein Length 36
Nucleotide Length 108
Protein Sequence MPVGSWQLESSRRLAEIQELHQSVRAAAEEARRKEE
Nucleotide Sequence CTGCCTGTGGGCTCATGGCAGCTGGAATCTTCTCGACGGCTGGCAGAGATCCAAGAACTGCACCAGAGTGTCCGGGCGGCTGCTGAAGAGGCCCGCAGGAAGGAGGAG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab