CircRNA Information

General Information
circRNA Basic Information
CircID chrX:53192565|53192845
Strand +
CircType exon
Host Gene ENSG00000126012.10;
Algorism CIRI2;
Sequence CCGCCCACCCCTGAGTCCCTTGACTTTTGTATTCTGACTCCAAGGTATTGTTCAGACCTCAGCTCCTGGGGGCCGGCCCCTGGAGTCTTCCCTCCCTGGTAGCCTCTAACCAGCATTCCCAGACACCTGAGGCAGATAGATGGATGGGCTGGTGGGCAGGGGGGTGGCTGGGGCTGGGCCATCACCATTCCAGAGACAAGGCCAGTGTATATGCAAACTGGGGGACTCTCCTCCCTTCTCTCCCCAGTTCTGGTCCTGGCCAGGCCATGCTACACTAACCC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chrX:53192565|53192845 hsa-miR-185-5p 0 0 1
chrX:53192565|53192845 hsa-miR-185-3p 0 0 1
chrX:53192565|53192845 hsa-miR-206 0 0 1
chrX:53192565|53192845 hsa-miR-326 0 0 1
chrX:53192565|53192845 hsa-miR-448 0 0 1
chrX:53192565|53192845 hsa-miR-432-5p 0 0 1
chrX:53192565|53192845 hsa-miR-432-3p 0 0 1
chrX:53192565|53192845 hsa-miR-193b-5p 0 0 1
chrX:53192565|53192845 hsa-miR-193b-3p 0 0 1
chrX:53192565|53192845 hsa-miR-510-5p 0 0 1
chrX:53192565|53192845 hsa-miR-510-3p 0 0 1
chrX:53192565|53192845 hsa-miR-593-5p 0 0 1
chrX:53192565|53192845 hsa-miR-593-3p 0 0 1
chrX:53192565|53192845 hsa-miR-608 0 0 1
chrX:53192565|53192845 hsa-miR-613 0 0 1
chrX:53192565|53192845 hsa-miR-765 0 0 1
chrX:53192565|53192845 hsa-miR-541-5p 0 0 1
chrX:53192565|53192845 hsa-miR-541-3p 0 0 1
chrX:53192565|53192845 hsa-miR-708-5p 0 0 1
chrX:53192565|53192845 hsa-miR-708-3p 0 0 1
chrX:53192565|53192845 hsa-miR-877-5p 0 0 1
chrX:53192565|53192845 hsa-miR-877-3p 0 0 1
chrX:53192565|53192845 hsa-miR-665 0 0 1
chrX:53192565|53192845 hsa-miR-939-5p 0 0 1
chrX:53192565|53192845 hsa-miR-939-3p 0 0 1
chrX:53192565|53192845 hsa-miR-1226-5p 0 0 1
chrX:53192565|53192845 hsa-miR-1226-3p 0 0 1
chrX:53192565|53192845 hsa-miR-1231 0 0 1
chrX:53192565|53192845 hsa-miR-1299 0 0 1
chrX:53192565|53192845 hsa-miR-1266-5p 0 0 1
chrX:53192565|53192845 hsa-miR-1266-3p 0 0 1
chrX:53192565|53192845 hsa-miR-1321 0 0 1
chrX:53192565|53192845 hsa-miR-125a-3p 0 0 1
chrX:53192565|53192845 hsa-miR-1289 0 0 1
chrX:53192565|53192845 hsa-miR-654-5p 0 0 1
chrX:53192565|53192845 hsa-miR-508-5p 0 0 1
chrX:53192565|53192845 hsa-miR-361-3p 0 0 1
chrX:53192565|53192845 hsa-miR-28-5p 0 0 1
chrX:53192565|53192845 hsa-miR-875-3p 0 0 1
chrX:53192565|53192845 hsa-miR-330-5p 0 0 1
chrX:53192565|53192845 hsa-miR-193a-3p 1 0 1
chrX:53192565|53192845 hsa-miR-7 0 0 1
chrX:53192565|53192845 hsa-miR-153 0 0 1
chrX:53192565|53192845 hsa-miR-138 0 0 1
chrX:53192565|53192845 hsa-miR-1 0 0 1
chrX:53192565|53192845 hsa-miR-557 1 0 0
chrX:53192565|53192845 hsa-miR-602 1 0 0
chrX:53192565|53192845 hsa-miR-658 1 0 0
chrX:53192565|53192845 hsa-miR-4312 1 0 0
chrX:53192565|53192845 hsa-miR-4270 1 0 0
chrX:53192565|53192845 hsa-miR-4437 1 0 0
chrX:53192565|53192845 hsa-miR-4706 1 0 0
chrX:53192565|53192845 hsa-miR-4729 1 0 0
chrX:53192565|53192845 hsa-miR-4739 1 0 0
chrX:53192565|53192845 hsa-miR-6069 1 0 0
chrX:53192565|53192845 hsa-miR-8089 1 0 0
chrX:53192565|53192845 hsa-miR-7106-5p 1 0 0
chrX:53192565|53192845 hsa-miR-766-3p 1 0 0
chrX:53192565|53192845 hsa-miR-219a-1-3p 1 0 0
chrX:53192565|53192845 hsa-miR-6510-5p 1 0 0
chrX:53192565|53192845 hsa-miR-6728-5p 1 0 0
chrX:53192565|53192845 hsa-miR-7160-5p 1 0 0
chrX:53192565|53192845 hsa-miR-197-5p 1 0 0
chrX:53192565|53192845 hsa-miR-1915-5p 1 0 0
chrX:53192565|53192845 hsa-miR-6881-5p 1 0 0
chrX:53192565|53192845 hsa-miR-6782-5p 1 0 0
chrX:53192565|53192845 hsa-miR-7109-5p 1 0 0
chrX:53192565|53192845 hsa-miR-6757-3p 1 0 0
chrX:53192565|53192845 hsa-miR-6771-5p 1 0 0
chrX:53192565|53192845 hsa-miR-3191-5p 1 0 0
chrX:53192565|53192845 hsa-miR-149-3p 1 0 0
chrX:53192565|53192845 hsa-miR-3190-5p 1 0 0
chrX:53192565|53192845 hsa-miR-4529-3p 1 0 0
chrX:53192565|53192845 hsa-miR-6780b-3p 1 0 0
chrX:53192565|53192845 hsa-miR-1233-5p 1 0 0
chrX:53192565|53192845 hsa-miR-4763-3p 1 0 0
chrX:53192565|53192845 hsa-miR-6812-5p 1 0 0
chrX:53192565|53192845 hsa-miR-1343-5p 1 0 0
chrX:53192565|53192845 hsa-miR-6726-5p 1 0 0
chrX:53192565|53192845 hsa-miR-6813-5p 1 0 0
chrX:53192565|53192845 hsa-miR-7107-5p 1 0 0
chrX:53192565|53192845 hsa-miR-1249-5p 1 0 0
chrX:53192565|53192845 hsa-miR-6763-5p 1 0 0
chrX:53192565|53192845 hsa-miR-6780a-5p 1 0 0
chrX:53192565|53192845 hsa-miR-6797-5p 1 0 0
chrX:53192565|53192845 hsa-miR-328-5p 1 0 0
chrX:53192565|53192845 hsa-miR-4685-5p 1 0 0
chrX:53192565|53192845 hsa-miR-6795-5p 1 0 0
chrX:53192565|53192845 hsa-miR-6887-5p 1 0 0
chrX:53192565|53192845 hsa-miR-6889-5p 1 0 0
chrX:53192565|53192845 hsa-miR-4646-5p 1 0 0
chrX:53192565|53192845 hsa-miR-4667-5p 1 0 0
chrX:53192565|53192845 hsa-miR-6775-3p 1 0 0
chrX:53192565|53192845 hsa-miR-6817-5p 1 0 0
chrX:53192565|53192845 hsa-miR-6824-3p 1 0 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chrX:53192565|53192845
ORF Type ORF1
Protein Length 51
Nucleotide Length 153
Protein Sequence MRQIDGWAGGQGGGWGWAITIPETRPVYMQTGGLSSLLSPVLVLARPCYTN
Nucleotide Sequence CTGAGGCAGATAGATGGATGGGCTGGTGGGCAGGGGGGTGGCTGGGGCTGGGCCATCACCATTCCAGAGACAAGGCCAGTGTATATGCAAACTGGGGGACTCTCCTCCCTTCTCTCCCCAGTTCTGGTCCTGGCCAGGCCATGCTACACTAAC
CircID chrX:53192565|53192845
ORF Type ORF2
Protein Length 47
Nucleotide Length 141
Protein Sequence MDGLVGRGVAGAGPSPFQRQGQCICKLGDSPPFSPQFWSWPGHATLT
Nucleotide Sequence ATGGATGGGCTGGTGGGCAGGGGGGTGGCTGGGGCTGGGCCATCACCATTCCAGAGACAAGGCCAGTGTATATGCAAACTGGGGGACTCTCCTCCCTTCTCTCCCCAGTTCTGGTCCTGGCCAGGCCATGCTACACTAACC
CircID chrX:53192565|53192845
ORF Type ORF3
Protein Length 83
Nucleotide Length 252
Protein Sequence MYSDSKVLFRPQLLGAGPWSLPSLVASNQHSQTPEADRWMGWWAGGWLGLGHHHSRDKASVYANWGTLLPSLPSSGPGQAMLH
Nucleotide Sequence TTGTATTCTGACTCCAAGGTATTGTTCAGACCTCAGCTCCTGGGGGCCGGCCCCTGGAGTCTTCCCTCCCTGGTAGCCTCTAACCAGCATTCCCAGACACCTGAGGCAGATAGATGGATGGGCTGGTGGGCAGGGGGGTGGCTGGGGCTGGGCCATCACCATTCCAGAGACAAGGCCAGTGTATATGCAAACTGGGGGACTCTCCTCCCTTCTCTCCCCAGTTCTGGTCCTGGCCAGGCCATGCTACACTAA
CircID chrX:53192565|53192845
ORF Type ORF4
Protein Length 87
Nucleotide Length 261
Protein Sequence MARTRTGERREESPPVCIYTGLVSGMVMAQPQPPPCPPAHPSICLRCLGMLVRGYQGGKTPGAGPQELRSEQYLGVRIQKSRDSGVG
Nucleotide Sequence CTGGCCAGGACCAGAACTGGGGAGAGAAGGGAGGAGAGTCCCCCAGTTTGCATATACACTGGCCTTGTCTCTGGAATGGTGATGGCCCAGCCCCAGCCACCCCCCTGCCCACCAGCCCATCCATCTATCTGCCTCAGGTGTCTGGGAATGCTGGTTAGAGGCTACCAGGGAGGGAAGACTCCAGGGGCCGGCCCCCAGGAGCTGAGGTCTGAACAATACCTTGGAGTCAGAATACAAAAGTCAAGGGACTCAGGGGTGGGC
CircID chrX:53192565|53192845
ORF Type ORF5
Protein Length 28
Nucleotide Length 87
Protein Sequence MAWPGPELGREGRRVPQFAYTLALSLEW
Nucleotide Sequence ATGGCCTGGCCAGGACCAGAACTGGGGAGAGAAGGGAGGAGAGTCCCCCAGTTTGCATATACACTGGCCTTGTCTCTGGAATGGTGA
CircID chrX:53192565|53192845
ORF Type ORF6
Protein Length 36
Nucleotide Length 111
Protein Sequence MHIHWPCLWNGDGPAPATPLPTSPSIYLPQVSGNAG
Nucleotide Sequence TTGCATATACACTGGCCTTGTCTCTGGAATGGTGATGGCCCAGCCCCAGCCACCCCCCTGCCCACCAGCCCATCCATCTATCTGCCTCAGGTGTCTGGGAATGCTGGTTAG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab