CircRNA Information

General Information
circRNA Basic Information
CircID chrX:53215907|53216182
Strand -
CircType exon
Host Gene ENSG00000126012.10;
Algorism CIRI2;
Sequence TCCACCTTCACATCCCCACCTAACTCCTCCTTCACCACTACTGTGGGGGGACACTCAGGCCCCTCCTTATCTGGGAGAGAGAAAAATGGCTGTAAACACAGGTCTAGGACACTTAGGGCCCTGACTTTTCTCCCCAGGTGAGGCCACCCCAGCCTGTTAGGCCTTACCTTTCTTCCGCAGAGTCTTGTCTTTGGCCATGAGGCCCAGGCCCATCATCTTGGGGCCTGCCCCATAGATCTGTAGCTTTTTCAGCTCTGGATTCTTCTCAATGTCTTC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chrX:53215907|53216182 hsa-miR-150-5p 0 0 1
chrX:53215907|53216182 hsa-miR-150-3p 0 0 1
chrX:53215907|53216182 hsa-miR-493-5p 0 0 1
chrX:53215907|53216182 hsa-miR-493-3p 0 0 1
chrX:53215907|53216182 hsa-miR-580-5p 0 0 1
chrX:53215907|53216182 hsa-miR-580-3p 0 0 1
chrX:53215907|53216182 hsa-miR-595 0 0 1
chrX:53215907|53216182 hsa-miR-608 0 0 1
chrX:53215907|53216182 hsa-miR-641 0 0 1
chrX:53215907|53216182 hsa-miR-661 1 0 1
chrX:53215907|53216182 hsa-miR-765 1 0 1
chrX:53215907|53216182 hsa-miR-939-5p 0 0 1
chrX:53215907|53216182 hsa-miR-939-3p 0 0 1
chrX:53215907|53216182 hsa-miR-1253 0 0 1
chrX:53215907|53216182 hsa-miR-548m 0 0 1
chrX:53215907|53216182 hsa-miR-1252-5p 0 0 1
chrX:53215907|53216182 hsa-miR-1252-3p 0 0 1
chrX:53215907|53216182 hsa-miR-140-5p 0 0 1
chrX:53215907|53216182 hsa-miR-491-5p 0 0 1
chrX:53215907|53216182 hsa-miR-486-3p 0 0 1
chrX:53215907|53216182 hsa-miR-532-3p 0 0 1
chrX:53215907|53216182 hsa-miR-574-5p 0 0 1
chrX:53215907|53216182 hsa-miR-423-5p 0 0 1
chrX:53215907|53216182 hsa-miR-525-5p 0 0 1
chrX:53215907|53216182 hsa-miR-199b-3p 0 0 1
chrX:53215907|53216182 hsa-miR-199a-3p 0 0 1
chrX:53215907|53216182 hsa-miR-342-5p 0 0 1
chrX:53215907|53216182 hsa-miR-520a-5p 0 0 1
chrX:53215907|53216182 hsa-miR-1300 0 0 1
chrX:53215907|53216182 hsa-miR-658 1 0 0
chrX:53215907|53216182 hsa-miR-762 1 0 0
chrX:53215907|53216182 hsa-miR-4488 1 0 0
chrX:53215907|53216182 hsa-miR-4516 1 0 0
chrX:53215907|53216182 hsa-miR-4651 1 0 0
chrX:53215907|53216182 hsa-miR-4656 1 0 0
chrX:53215907|53216182 hsa-miR-4689 1 0 0
chrX:53215907|53216182 hsa-miR-4710 1 0 0
chrX:53215907|53216182 hsa-miR-4739 1 0 0
chrX:53215907|53216182 hsa-miR-5194 1 0 0
chrX:53215907|53216182 hsa-miR-5698 1 0 0
chrX:53215907|53216182 hsa-miR-6127 1 0 0
chrX:53215907|53216182 hsa-miR-6133 1 0 0
chrX:53215907|53216182 hsa-miR-12118 1 0 0
chrX:53215907|53216182 hsa-miR-187-3p 1 0 0
chrX:53215907|53216182 hsa-miR-4433b-3p 1 0 0
chrX:53215907|53216182 hsa-miR-6765-5p 1 0 0
chrX:53215907|53216182 hsa-miR-7106-5p 1 0 0
chrX:53215907|53216182 hsa-miR-7847-3p 1 0 0
chrX:53215907|53216182 hsa-miR-3180-3p 1 0 0
chrX:53215907|53216182 hsa-miR-6748-5p 1 0 0
chrX:53215907|53216182 hsa-miR-185-3p 1 0 0
chrX:53215907|53216182 hsa-miR-6735-3p 1 0 0
chrX:53215907|53216182 hsa-miR-1229-5p 1 0 0
chrX:53215907|53216182 hsa-miR-1228-5p 1 0 0
chrX:53215907|53216182 hsa-miR-877-5p 1 0 0
chrX:53215907|53216182 hsa-miR-6749-5p 1 0 0
chrX:53215907|53216182 hsa-miR-6802-5p 1 0 0
chrX:53215907|53216182 hsa-miR-6877-5p 1 0 0
chrX:53215907|53216182 hsa-miR-6769b-5p 1 0 0
chrX:53215907|53216182 hsa-miR-6812-5p 1 0 0
chrX:53215907|53216182 hsa-miR-6870-5p 1 0 0
chrX:53215907|53216182 hsa-miR-1343-5p 1 0 0
chrX:53215907|53216182 hsa-miR-6737-5p 1 0 0
chrX:53215907|53216182 hsa-miR-6743-5p 1 0 0
chrX:53215907|53216182 hsa-miR-7107-5p 1 0 0
chrX:53215907|53216182 hsa-miR-11181-3p 1 0 0
chrX:53215907|53216182 hsa-miR-1249-5p 1 0 0
chrX:53215907|53216182 hsa-miR-6722-3p 1 0 0
chrX:53215907|53216182 hsa-miR-6763-5p 1 0 0
chrX:53215907|53216182 hsa-miR-328-5p 1 0 0
chrX:53215907|53216182 hsa-miR-4685-5p 1 0 0
chrX:53215907|53216182 hsa-miR-6777-5p 1 0 0
chrX:53215907|53216182 hsa-miR-6794-5p 1 0 0
chrX:53215907|53216182 hsa-miR-6858-5p 1 0 0
chrX:53215907|53216182 hsa-miR-6856-5p 1 0 0
chrX:53215907|53216182 hsa-miR-4646-5p 1 0 0
chrX:53215907|53216182 hsa-miR-6891-5p 1 0 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chrX:53215907|53216182
ORF Type ORF1
Protein Length 29
Nucleotide Length 90
Protein Sequence MLGLTFLPQSLVFGHEAQAHHLGACPIDL
Nucleotide Sequence CTGTTAGGCCTTACCTTTCTTCCGCAGAGTCTTGTCTTTGGCCATGAGGCCCAGGCCCATCATCTTGGGGCCTGCCCCATAGATCTGTAG
CircID chrX:53215907|53216182
ORF Type ORF2
Protein Length 27
Nucleotide Length 84
Protein Sequence MWGDTQAPPYLGERKMAVNTGLGHLGP
Nucleotide Sequence CTGTGGGGGGACACTCAGGCCCCTCCTTATCTGGGAGAGAGAAAAATGGCTGTAAACACAGGTCTAGGACACTTAGGGCCCTGA
CircID chrX:53215907|53216182
ORF Type ORF3
Protein Length 31
Nucleotide Length 96
Protein Sequence MKKLQIYGAGPKMMGLGLMAKDKTLRKKGKA
Nucleotide Sequence CTGAAAAAGCTACAGATCTATGGGGCAGGCCCCAAGATGATGGGCCTGGGCCTCATGGCCAAAGACAAGACTCTGCGGAAGAAAGGTAAGGCCTAA
CircID chrX:53215907|53216182
ORF Type ORF4
Protein Length 50
Nucleotide Length 150
Protein Sequence MGWPHLGRKVRALSVLDLCLQPFFSLPDKEGPECPPTVVVKEELGGDVKV
Nucleotide Sequence CTGGGGTGGCCTCACCTGGGGAGAAAAGTCAGGGCCCTAAGTGTCCTAGACCTGTGTTTACAGCCATTTTTCTCTCTCCCAGATAAGGAGGGGCCTGAGTGTCCCCCCACAGTAGTGGTGAAGGAGGAGTTAGGTGGGGATGTGAAGGTG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab