CircRNA Information

General Information
circRNA Basic Information
CircID chrX:53614534|53615835
Strand -
CircType exon
Host Gene ENSG00000086758.15;
Algorism find_circ;CIRI2;DCC;
Sequence GGGATACTGCATCCAACCTGGGGAGTGCTGTCGATGAGCTCATGAGACATCAGCCCACCCTTAAAACAGATGCAACGACTGCCATCATCAAGCCTGGGTGCAGTGGCTCACGCCTGTAATCCTGGCACTTTGGGAGGCTGAGGCTGGTGGATCGCTTGAGGCCAGGAGTTTGAGACCAGCCTGGACAACATGTTACTTGAAGAAATCTGTAATCTTGGAAGGGACCCCAAATACATCTGTCAGAAGCCATCAATCCAGAAGGCAGATGGCACTGCCACTGCTCCTCCCCCAAGGTCTAATCATGCCGCAGAAGAAGCCTCTAGTGAGGATGAGGAGGAAGAGGAAGTACAGGCCATGCAGAGCTTTAATTCTACCCAGCAAAATGAAACTGAGCCTAATCAGCA
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chrX:53614534|53615835 hsa-miR-183-5p 0 0 1
chrX:53614534|53615835 hsa-miR-183-3p 0 0 1
chrX:53614534|53615835 hsa-miR-217-5p 0 1 1
chrX:53614534|53615835 hsa-miR-217-3p 0 1 1
chrX:53614534|53615835 hsa-miR-432-5p 0 0 1
chrX:53614534|53615835 hsa-miR-432-3p 0 0 1
chrX:53614534|53615835 hsa-miR-545-5p 0 0 1
chrX:53614534|53615835 hsa-miR-545-3p 0 0 1
chrX:53614534|53615835 hsa-miR-626 0 0 1
chrX:53614534|53615835 hsa-miR-298 1 0 1
chrX:53614534|53615835 hsa-miR-891a-5p 0 0 1
chrX:53614534|53615835 hsa-miR-891a-3p 0 0 1
chrX:53614534|53615835 hsa-miR-921 0 1 1
chrX:53614534|53615835 hsa-miR-939-5p 0 0 1
chrX:53614534|53615835 hsa-miR-939-3p 0 0 1
chrX:53614534|53615835 hsa-miR-1255a 0 1 1
chrX:53614534|53615835 hsa-miR-548p 0 0 1
chrX:53614534|53615835 hsa-miR-138-5p 0 1 1
chrX:53614534|53615835 hsa-miR-143-5p 0 1 1
chrX:53614534|53615835 hsa-miR-15a-3p 0 1 1
chrX:53614534|53615835 hsa-miR-512-3p 0 1 1
chrX:53614534|53615835 hsa-miR-324-5p 0 0 1
chrX:53614534|53615835 hsa-miR-490-3p 0 1 1
chrX:53614534|53615835 hsa-miR-361-3p 0 0 1
chrX:53614534|53615835 hsa-miR-556-5p 0 1 1
chrX:53614534|53615835 hsa-miR-509-3-5p 0 0 1
chrX:53614534|53615835 hsa-miR-509-5p 0 0 1
chrX:53614534|53615835 hsa-miR-1255b 0 0 1
chrX:53614534|53615835 hsa-miR-1185 0 0 1
chrX:53614534|53615835 hsa-miR-198 0 1 0
chrX:53614534|53615835 hsa-miR-601 1 0 0
chrX:53614534|53615835 hsa-miR-612 1 0 0
chrX:53614534|53615835 hsa-miR-638 1 0 0
chrX:53614534|53615835 hsa-miR-761 0 1 0
chrX:53614534|53615835 hsa-miR-765 0 1 0
chrX:53614534|53615835 hsa-miR-4268 0 1 0
chrX:53614534|53615835 hsa-miR-3646 0 1 0
chrX:53614534|53615835 hsa-miR-3659 0 1 0
chrX:53614534|53615835 hsa-miR-3714 0 1 0
chrX:53614534|53615835 hsa-miR-3916 0 1 0
chrX:53614534|53615835 hsa-miR-4475 0 1 0
chrX:53614534|53615835 hsa-miR-2392 0 1 0
chrX:53614534|53615835 hsa-miR-4510 0 1 0
chrX:53614534|53615835 hsa-miR-4739 1 0 0
chrX:53614534|53615835 hsa-miR-4751 1 0 0
chrX:53614534|53615835 hsa-miR-5683 0 1 0
chrX:53614534|53615835 hsa-miR-5685 0 1 0
chrX:53614534|53615835 hsa-miR-6077 0 1 0
chrX:53614534|53615835 hsa-miR-6860 1 0 0
chrX:53614534|53615835 hsa-miR-12122 1 0 0
chrX:53614534|53615835 hsa-miR-150-3p 1 0 0
chrX:53614534|53615835 hsa-miR-671-5p 1 1 0
chrX:53614534|53615835 hsa-miR-1972 1 1 0
chrX:53614534|53615835 hsa-miR-766-5p 0 1 0
chrX:53614534|53615835 hsa-miR-7851-3p 0 1 0
chrX:53614534|53615835 hsa-miR-7847-3p 1 0 0
chrX:53614534|53615835 hsa-miR-296-5p 1 0 0
chrX:53614534|53615835 hsa-miR-3605-5p 0 1 0
chrX:53614534|53615835 hsa-miR-3126-5p 1 0 0
chrX:53614534|53615835 hsa-miR-6760-5p 1 0 0
chrX:53614534|53615835 hsa-miR-615-5p 1 0 0
chrX:53614534|53615835 hsa-miR-3648 1 0 0
chrX:53614534|53615835 hsa-miR-149-3p 1 0 0
chrX:53614534|53615835 hsa-miR-7156-3p 1 0 0
chrX:53614534|53615835 hsa-miR-6886-5p 1 0 0
chrX:53614534|53615835 hsa-miR-6864-5p 1 0 0
chrX:53614534|53615835 hsa-miR-6814-5p 0 1 0
chrX:53614534|53615835 hsa-miR-6773-3p 0 1 0
chrX:53614534|53615835 hsa-miR-4649-3p 1 0 0
chrX:53614534|53615835 hsa-miR-6760-3p 0 1 0
chrX:53614534|53615835 hsa-miR-767-3p 0 1 0
chrX:53614534|53615835 hsa-miR-6847-3p 0 1 0
chrX:53614534|53615835 hsa-miR-181c-5p 1 0 0
chrX:53614534|53615835 hsa-miR-181a-5p 1 0 0
chrX:53614534|53615835 hsa-miR-6890-3p 0 1 0
chrX:53614534|53615835 hsa-miR-5585-5p 0 1 0
chrX:53614534|53615835 hsa-miR-5002-3p 0 1 0
chrX:53614534|53615835 hsa-let-7g-3p 1 0 0
chrX:53614534|53615835 hsa-miR-6819-5p 1 0 0
chrX:53614534|53615835 hsa-miR-11181-3p 1 1 0
chrX:53614534|53615835 hsa-miR-1249-5p 1 0 0
chrX:53614534|53615835 hsa-miR-6763-5p 0 1 0
chrX:53614534|53615835 hsa-miR-6875-5p 1 0 0
chrX:53614534|53615835 hsa-miR-7111-5p 1 1 0
chrX:53614534|53615835 hsa-miR-6735-5p 0 1 0
chrX:53614534|53615835 hsa-miR-6858-5p 1 1 0
chrX:53614534|53615835 hsa-miR-6511a-5p 0 1 0
chrX:53614534|53615835 hsa-miR-6511b-5p 1 0 0
chrX:53614534|53615835 hsa-miR-1914-3p 1 0 0
chrX:53614534|53615835 hsa-miR-7151-3p 0 1 0
chrX:53614534|53615835 hsa-miR-4700-5p 0 1 0
chrX:53614534|53615835 hsa-miR-3173-3p 1 0 0
chrX:53614534|53615835 hsa-miR-3679-5p 1 0 0
chrX:53614534|53615835 hsa-miR-6762-5p 1 0 0
chrX:53614534|53615835 hsa-miR-6859-5p 0 1 0
chrX:53614534|53615835 hsa-miR-6817-5p 0 1 0
chrX:53614534|53615835 hsa-miR-6764-5p 1 1 0
chrX:53614534|53615835 hsa-miR-4769-3p 0 1 0
chrX:53614534|53615835 hsa-miR-6811-5p 1 0 0
chrX:53614534|53615835 hsa-miR-6807-3p 0 1 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chrX:53614534|53615835
ORF Type ORF1
Protein Length 71
Nucleotide Length 213
Protein Sequence MLLEEICNLGRDPKYICQKPSIQKADGTATAPPPRSNHAAEEASSEDEEEEEVQAMQSFNSTQQNETEPNQ
Nucleotide Sequence ATGTTACTTGAAGAAATCTGTAATCTTGGAAGGGACCCCAAATACATCTGTCAGAAGCCATCAATCCAGAAGGCAGATGGCACTGCCACTGCTCCTCCCCCAAGGTCTAATCATGCCGCAGAAGAAGCCTCTAGTGAGGATGAGGAGGAAGAGGAAGTACAGGCCATGCAGAGCTTTAATTCTACCCAGCAAAATGAAACTGAGCCTAATCAG
CircID chrX:53614534|53615835
ORF Type ORF2
Protein Length 67
Nucleotide Length 201
Protein Sequence MASDRCIWGPFQDYRFLQVTCCPGWSQTPGLKRSTSLSLPKCQDYRREPLHPGLMMAVVASVLRVG*
Nucleotide Sequence ATGGCTTCTGACAGATGTATTTGGGGTCCCTTCCAAGATTACAGATTTCTTCAAGTAACATGTTGTCCAGGCTGGTCTCAAACTCCTGGCCTCAAGCGATCCACCAGCCTCAGCCTCCCAAAGTGCCAGGATTACAGGCGTGAGCCACTGCACCCAGGCTTGATGATGGCAGTCGTTGCATCTGTTTTAAGGGTGGGCTGA
CircID chrX:53614534|53615835
ORF Type ORF3
Protein Length 102
Nucleotide Length 306
Protein Sequence VQWLTPVILALWEAEAGGSLEARSLRPAWTTCYLKKSVILEGTPNTSVRSHQSRRQMALPLLLPQGLIMPQKKPLVRMRRKRKYRPCRALILPSKMKLSLIS
Nucleotide Sequence GTGCAGTGGCTCACGCCTGTAATCCTGGCACTTTGGGAGGCTGAGGCTGGTGGATCGCTTGAGGCCAGGAGTTTGAGACCAGCCTGGACAACATGTTACTTGAAGAAATCTGTAATCTTGGAAGGGACCCCAAATACATCTGTCAGAAGCCATCAATCCAGAAGGCAGATGGCACTGCCACTGCTCCTCCCCCAAGGTCTAATCATGCCGCAGAAGAAGCCTCTAGTGAGGATGAGGAGGAAGAGGAAGTACAGGCCATGCAGAGCTTTAATTCTACCCAGCAAAATGAAACTGAGCCTAATCAGC
CircID chrX:53614534|53615835
ORF Type ORF4
Protein Length 43
Nucleotide Length 129
Protein Sequence MYLGSLPRLQISSSNMLSRLVSNSWPQAIHQPQPPKVPGLQA*
Nucleotide Sequence ATGTATTTGGGGTCCCTTCCAAGATTACAGATTTCTTCAAGTAACATGTTGTCCAGGCTGGTCTCAAACTCCTGGCCTCAAGCGATCCACCAGCCTCAGCCTCCCAAAGTGCCAGGATTACAGGCGTGA
CircID chrX:53614534|53615835
ORF Type ORF1
Protein Length 28
Nucleotide Length 87
Protein Sequence MYLGSLPRLQISSSNLMMAVVASVLRVG
Nucleotide Sequence ATGTATTTGGGGTCCCTTCCAAGATTACAGATTTCTTCAAGTAACTTGATGATGGCAGTCGTTGCATCTGTTTTAAGGGTGGGCTGA
CircID chrX:53614534|53615835
ORF Type ORF2
Protein Length 34
Nucleotide Length 105
Protein Sequence MGEEQWQCHLPSGLMASDRCIWGPFQDYRFLQVT
Nucleotide Sequence TTGGGGGAGGAGCAGTGGCAGTGCCATCTGCCTTCTGGATTGATGGCTTCTGACAGATGTATTTGGGGTCCCTTCCAAGATTACAGATTTCTTCAAGTAACTTGA
CircID chrX:53614534|53615835
ORF Type ORF3
Protein Length 50
Nucleotide Length 153
Protein Sequence LIRLSFILLGRIKALHGLYFLFLLILTRGFFCGMIRPWGRSSGSAICLLD
Nucleotide Sequence CTGATTAGGCTCAGTTTCATTTTGCTGGGTAGAATTAAAGCTCTGCATGGCCTGTACTTCCTCTTCCTCCTCATCCTCACTAGAGGCTTCTTCTGCGGCATGATTAGACCTTGGGGGAGGAGCAGTGGCAGTGCCATCTGCCTTCTGGATTGA
CircID chrX:53614534|53615835
ORF Type ORF4
Protein Length 78
Nucleotide Length 234
Protein Sequence MQRLPSSSYLKKSVILEGTPNTSVRSHQSRRQMALPLLLPQGLIMPQKKPLVRMRRKRKYRPCRALILPSKMKLSLIS
Nucleotide Sequence ATGCAACGACTGCCATCATCAAGTTACTTGAAGAAATCTGTAATCTTGGAAGGGACCCCAAATACATCTGTCAGAAGCCATCAATCCAGAAGGCAGATGGCACTGCCACTGCTCCTCCCCCAAGGTCTAATCATGCCGCAGAAGAAGCCTCTAGTGAGGATGAGGAGGAAGAGGAAGTACAGGCCATGCAGAGCTTTAATTCTACCCAGCAAAATGAAACTGAGCCTAATCAGC
CircID chrX:53614534|53615835
ORF Type ORF5
Protein Length 95
Nucleotide Length 285
Protein Sequence MGSAVDELMRHQPTLKTDATTAIIKLLEEICNLGRDPKYICQKPSIQKADGTATAPPPRSNHAAEEASSEDEEEEEVQAMQSFNSTQQNETEPNQ
Nucleotide Sequence CTGGGGAGTGCTGTCGATGAGCTCATGAGACATCAGCCCACCCTTAAAACAGATGCAACGACTGCCATCATCAAGTTACTTGAAGAAATCTGTAATCTTGGAAGGGACCCCAAATACATCTGTCAGAAGCCATCAATCCAGAAGGCAGATGGCACTGCCACTGCTCCTCCCCCAAGGTCTAATCATGCCGCAGAAGAAGCCTCTAGTGAGGATGAGGAGGAAGAGGAAGTACAGGCCATGCAGAGCTTTAATTCTACCCAGCAAAATGAAACTGAGCCTAATCAG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
chrX:53614534|53615835 NOP56 2 3 2
chrX:53614534|53615835 ELAVL1 7 15 3
chrX:53614534|53615835 SF3B4 1 0 0
chrX:53614534|53615835 CNBP 0 0 1
chrX:53614534|53615835 PRPF8 0 1 0
chrX:53614534|53615835 TAF15 1 0 0
chrX:53614534|53615835 FMR1 0 0 4
chrX:53614534|53615835 NUDT21 1 1 0
chrX:53614534|53615835 CPSF2 1 0 0
chrX:53614534|53615835 AGO2 0 0 2
chrX:53614534|53615835 GNL3 0 1 1
chrX:53614534|53615835 DGCR8 0 0 2
chrX:53614534|53615835 QKI 0 1 1
chrX:53614534|53615835 SRSF1 6 11 3
chrX:53614534|53615835 NOP58 5 1 5
chrX:53614534|53615835 U2AF2 31 26 5
chrX:53614534|53615835 DDX54 1 0 9
chrX:53614534|53615835 SBDS 1 0 0
chrX:53614534|53615835 RBM10 10 4 0
chrX:53614534|53615835 HNRNPL 2 0 0
chrX:53614534|53615835 SF3A3 1 0 1
chrX:53614534|53615835 FIP1L1 1 1 0
chrX:53614534|53615835 PTBP1 3 3 0
chrX:53614534|53615835 HNRNPC 38 81 15
chrX:53614534|53615835 HNRNPD 1 0 0
chrX:53614534|53615835 TRA2A 0 0 3
chrX:53614534|53615835 ACIN1 0 0 3
chrX:53614534|53615835 ZC3H7B 0 1 0
chrX:53614534|53615835 SMNDC1 1 0 1
chrX:53614534|53615835 AUH 0 0 1
chrX:53614534|53615835 HNRNPA1 10 21 2
chrX:53614534|53615835 LIN28B 1 0 0
chrX:53614534|53615835 FXR1 0 0 1
chrX:53614534|53615835 IGF2BP1 1 2 5
chrX:53614534|53615835 IGF2BP3 1 0 7
chrX:53614534|53615835 IGF2BP2 2 2 8
chrX:53614534|53615835 TARDBP 1 3 0
chrX:53614534|53615835 YTHDC1 1 0 0
chrX:53614534|53615835 BUD13 0 1 2
chrX:53614534|53615835 RBFOX2 1 5 0
chrX:53614534|53615835 RBM47 0 0 2
chrX:53614534|53615835 DHX30 0 0 1
chrX:53614534|53615835 CSTF2T 0 2 5
chrX:53614534|53615835 CSTF2 6 8 0
chrX:53614534|53615835 FUS 2 5 0
chrX:53614534|53615835 TARBP2 0 0 1
chrX:53614534|53615835 CPSF7 4 4 0
chrX:53614534|53615835 HNRNPK 1 0 0
chrX:53614534|53615835 AIFM1 0 0 1
chrX:53614534|53615835 EWSR1 0 2 1
chrX:53614534|53615835 EIF4A3 5 3 4
chrX:53614534|53615835 FBL 1 0 2
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab