CircRNA Information

General Information
circRNA Basic Information
CircID chrX:54071007|54071255
Strand -
CircType exon
Host Gene ENSG00000184083.10;
Algorism CIRI2;
Sequence CTGCTGTGGGTTAAGGTGCATGGGGTTTTTCAAAAAGAACCCTGCTAGAAGATTAGTCAGTTGTATTTCTGTAGAAATGGTACTTCTTGGGCAAGAATATCACAAAGCCCAAAAGGAGGTATATGAGGCTGGAAGCCTCAATTCCTGAATGAAGACACAATGCTAATTTATTGCAAGCCATGTTTCCCTCCCTCATAGTTAGGCTGCCCAAGGAGGGAAACTGGAAATGCAAGGTTGTCTCAAGATTAT
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chrX:54071007|54071255 hsa-miR-33a-5p 0 0 1
chrX:54071007|54071255 hsa-miR-33a-3p 0 0 1
chrX:54071007|54071255 hsa-miR-135b-5p 0 0 1
chrX:54071007|54071255 hsa-miR-135b-3p 0 0 1
chrX:54071007|54071255 hsa-miR-494-5p 0 0 1
chrX:54071007|54071255 hsa-miR-494-3p 0 0 1
chrX:54071007|54071255 hsa-miR-526b-5p 0 0 1
chrX:54071007|54071255 hsa-miR-526b-3p 0 0 1
chrX:54071007|54071255 hsa-miR-592 0 0 1
chrX:54071007|54071255 hsa-miR-599 0 0 1
chrX:54071007|54071255 hsa-miR-33b-5p 0 0 1
chrX:54071007|54071255 hsa-miR-33b-3p 0 0 1
chrX:54071007|54071255 hsa-miR-635 0 1 1
chrX:54071007|54071255 hsa-miR-758-5p 0 0 1
chrX:54071007|54071255 hsa-miR-758-3p 0 0 1
chrX:54071007|54071255 hsa-miR-1298-5p 0 0 1
chrX:54071007|54071255 hsa-miR-1298-3p 0 0 1
chrX:54071007|54071255 hsa-miR-873-5p 0 0 1
chrX:54071007|54071255 hsa-miR-873-3p 0 0 1
chrX:54071007|54071255 hsa-miR-1179 0 0 1
chrX:54071007|54071255 hsa-miR-1304-5p 0 0 1
chrX:54071007|54071255 hsa-miR-1304-3p 0 0 1
chrX:54071007|54071255 hsa-miR-1321 0 1 1
chrX:54071007|54071255 hsa-miR-139-5p 0 0 1
chrX:54071007|54071255 hsa-miR-145-5p 0 1 1
chrX:54071007|54071255 hsa-miR-485-5p 0 0 1
chrX:54071007|54071255 hsa-miR-875-5p 0 0 1
chrX:54071007|54071255 hsa-miR-502-3p 0 0 1
chrX:54071007|54071255 hsa-miR-501-3p 0 0 1
chrX:54071007|54071255 hsa-miR-548d-3p 0 0 1
chrX:54071007|54071255 hsa-miR-642 0 0 1
chrX:54071007|54071255 hsa-miR-135a 0 0 1
chrX:54071007|54071255 hsa-miR-3147 1 0 0
chrX:54071007|54071255 hsa-miR-3689f 0 1 0
chrX:54071007|54071255 hsa-miR-4510 0 1 0
chrX:54071007|54071255 hsa-miR-5680 0 1 0
chrX:54071007|54071255 hsa-miR-6130 0 1 0
chrX:54071007|54071255 hsa-miR-6133 0 1 0
chrX:54071007|54071255 hsa-miR-6849-3p 0 1 0
chrX:54071007|54071255 hsa-miR-6841-3p 0 1 0
chrX:54071007|54071255 hsa-miR-6834-5p 0 1 0
chrX:54071007|54071255 hsa-miR-149-3p 0 1 0
chrX:54071007|54071255 hsa-miR-605-5p 0 1 0
chrX:54071007|54071255 hsa-miR-506-5p 0 1 0
chrX:54071007|54071255 hsa-miR-5585-5p 0 1 0
chrX:54071007|54071255 hsa-miR-1249-5p 0 1 0
chrX:54071007|54071255 hsa-miR-6774-5p 1 1 0
chrX:54071007|54071255 hsa-miR-6797-5p 0 1 0
chrX:54071007|54071255 hsa-miR-4728-5p 0 1 0
chrX:54071007|54071255 hsa-miR-6883-5p 0 1 0
chrX:54071007|54071255 hsa-miR-4716-3p 0 1 0
chrX:54071007|54071255 hsa-miR-362-5p 0 1 0
chrX:54071007|54071255 hsa-miR-5195-3p 0 1 0
chrX:54071007|54071255 hsa-miR-6771-3p 0 1 0
chrX:54071007|54071255 hsa-miR-4774-3p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chrX:54071007|54071255
ORF Type ORF1
Protein Length 42
Nucleotide Length 129
Protein Sequence MGFFKKNPARRLVSCISVEMVLLGQEYHKAQKEVYEAGSLNS
Nucleotide Sequence ATGGGGTTTTTCAAAAAGAACCCTGCTAGAAGATTAGTCAGTTGTATTTCTGTAGAAATGGTACTTCTTGGGCAAGAATATCACAAAGCCCAAAAGGAGGTATATGAGGCTGGAAGCCTCAATTCCTGA
CircID chrX:54071007|54071255
ORF Type ORF2
Protein Length 26
Nucleotide Length 78
Protein Sequence MQAMFPSLIVRLPKEGNWKCKVVSRL
Nucleotide Sequence TTGCAAGCCATGTTTCCCTCCCTCATAGTTAGGCTGCCCAAGGAGGGAAACTGGAAATGCAAGGTTGTCTCAAGATTA
CircID chrX:54071007|54071255
ORF Type ORF3
Protein Length 59
Nucleotide Length 180
Protein Sequence MHFQFPSLGSLTMREGNMACNKLALCLHSGIEASSLIYLLLGFVIFLPKKYHFYRNTTD
Nucleotide Sequence TTGCATTTCCAGTTTCCCTCCTTGGGCAGCCTAACTATGAGGGAGGGAAACATGGCTTGCAATAAATTAGCATTGTGTCTTCATTCAGGAATTGAGGCTTCCAGCCTCATATACCTCCTTTTGGGCTTTGTGATATTCTTGCCCAAGAAGTACCATTTCTACAGAAATACAACTGACTAA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab