CircRNA Information

General Information
circRNA Basic Information
CircID chrX:54815257|54815491
Strand +
CircType exon
Host Gene ENSG00000102316.15;
Algorism CIRI2;
Sequence TCTCTTGGGCTTTGGCTTTAGCTTCTGCTCCCGCCTGGATCCGGGCTTTGGCCCAGGGTCCGATATCAGCTTCGTCCCAGTTGCAGGGCCCGGCAGCATTCTCCGAGCCGAGCCCAATGCCCATTCGAGCTCTAATCTCGGCCCTAGCCTTGGCTTCAGCTGCAGCCTCAGCTGCAGCCTTCAAATCCGCTTCCATCGCCTCTCGGTACTGAGCTGCCCATTCCTTGGGATCCTT
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chrX:54815257|54815491 hsa-miR-504-5p 0 0 1
chrX:54815257|54815491 hsa-miR-504-3p 0 0 1
chrX:54815257|54815491 hsa-miR-1296-5p 0 0 1
chrX:54815257|54815491 hsa-miR-1296-3p 0 0 1
chrX:54815257|54815491 hsa-miR-1301-5p 0 0 1
chrX:54815257|54815491 hsa-miR-1301-3p 0 0 1
chrX:54815257|54815491 hsa-miR-298 0 0 1
chrX:54815257|54815491 hsa-miR-891b 0 0 1
chrX:54815257|54815491 hsa-miR-1291 0 0 1
chrX:54815257|54815491 hsa-miR-1256 0 0 1
chrX:54815257|54815491 hsa-miR-671-5p 0 0 1
chrX:54815257|54815491 hsa-miR-127-3p 0 0 1
chrX:54815257|54815491 hsa-miR-485-5p 0 0 1
chrX:54815257|54815491 hsa-miR-1184 0 0 1
chrX:54815257|54815491 hsa-miR-638 1 0 0
chrX:54815257|54815491 hsa-miR-663a 1 0 0
chrX:54815257|54815491 hsa-miR-762 1 0 0
chrX:54815257|54815491 hsa-miR-765 1 0 0
chrX:54815257|54815491 hsa-miR-665 1 0 0
chrX:54815257|54815491 hsa-miR-2861 1 0 0
chrX:54815257|54815491 hsa-miR-3132 1 0 0
chrX:54815257|54815491 hsa-miR-3147 1 0 0
chrX:54815257|54815491 hsa-miR-3197 1 0 0
chrX:54815257|54815491 hsa-miR-4292 0 1 0
chrX:54815257|54815491 hsa-miR-3937 0 1 0
chrX:54815257|54815491 hsa-miR-4449 1 0 0
chrX:54815257|54815491 hsa-miR-4468 0 1 0
chrX:54815257|54815491 hsa-miR-4507 1 0 0
chrX:54815257|54815491 hsa-miR-4523 1 0 0
chrX:54815257|54815491 hsa-miR-1587 1 0 0
chrX:54815257|54815491 hsa-miR-3960 1 0 0
chrX:54815257|54815491 hsa-miR-4656 1 0 0
chrX:54815257|54815491 hsa-miR-4673 1 0 0
chrX:54815257|54815491 hsa-miR-4674 0 1 0
chrX:54815257|54815491 hsa-miR-4721 0 1 0
chrX:54815257|54815491 hsa-miR-4784 1 0 0
chrX:54815257|54815491 hsa-miR-5047 0 1 0
chrX:54815257|54815491 hsa-miR-5188 0 1 0
chrX:54815257|54815491 hsa-miR-5787 1 0 0
chrX:54815257|54815491 hsa-miR-6069 0 1 0
chrX:54815257|54815491 hsa-miR-6081 1 0 0
chrX:54815257|54815491 hsa-miR-6125 1 0 0
chrX:54815257|54815491 hsa-miR-6126 0 1 0
chrX:54815257|54815491 hsa-miR-8075 0 1 0
chrX:54815257|54815491 hsa-miR-8089 1 0 0
chrX:54815257|54815491 hsa-miR-12115 1 0 0
chrX:54815257|54815491 hsa-miR-127-5p 0 1 0
chrX:54815257|54815491 hsa-miR-6765-5p 1 0 0
chrX:54815257|54815491 hsa-miR-6894-5p 1 0 0
chrX:54815257|54815491 hsa-miR-6854-5p 0 1 0
chrX:54815257|54815491 hsa-miR-6728-5p 1 0 0
chrX:54815257|54815491 hsa-miR-6089 1 0 0
chrX:54815257|54815491 hsa-miR-6757-5p 1 0 0
chrX:54815257|54815491 hsa-miR-6730-5p 1 0 0
chrX:54815257|54815491 hsa-miR-4753-5p 0 1 0
chrX:54815257|54815491 hsa-miR-7160-5p 0 1 0
chrX:54815257|54815491 hsa-miR-197-5p 1 0 0
chrX:54815257|54815491 hsa-miR-6772-5p 1 0 0
chrX:54815257|54815491 hsa-miR-486-3p 1 0 0
chrX:54815257|54815491 hsa-miR-2467-3p 1 0 0
chrX:54815257|54815491 hsa-miR-5006-5p 1 0 0
chrX:54815257|54815491 hsa-miR-3934-3p 1 0 0
chrX:54815257|54815491 hsa-miR-939-3p 0 1 0
chrX:54815257|54815491 hsa-miR-5088-5p 1 0 0
chrX:54815257|54815491 hsa-miR-1226-5p 1 0 0
chrX:54815257|54815491 hsa-miR-4786-3p 1 0 0
chrX:54815257|54815491 hsa-miR-4640-5p 1 0 0
chrX:54815257|54815491 hsa-miR-6753-5p 1 0 0
chrX:54815257|54815491 hsa-miR-885-3p 1 0 0
chrX:54815257|54815491 hsa-miR-4713-3p 0 1 0
chrX:54815257|54815491 hsa-miR-6749-5p 1 0 0
chrX:54815257|54815491 hsa-miR-7854-3p 1 0 0
chrX:54815257|54815491 hsa-miR-6717-5p 1 0 0
chrX:54815257|54815491 hsa-miR-6830-5p 0 1 0
chrX:54815257|54815491 hsa-miR-6789-5p 1 0 0
chrX:54815257|54815491 hsa-miR-6781-5p 1 0 0
chrX:54815257|54815491 hsa-miR-6877-5p 1 0 0
chrX:54815257|54815491 hsa-miR-664b-5p 1 0 0
chrX:54815257|54815491 hsa-miR-423-5p 1 0 0
chrX:54815257|54815491 hsa-miR-4638-5p 0 1 0
chrX:54815257|54815491 hsa-miR-4772-3p 0 1 0
chrX:54815257|54815491 hsa-miR-6814-5p 0 1 0
chrX:54815257|54815491 hsa-miR-3940-3p 0 1 0
chrX:54815257|54815491 hsa-miR-4649-3p 0 1 0
chrX:54815257|54815491 hsa-miR-6761-5p 1 0 0
chrX:54815257|54815491 hsa-miR-10400-5p 1 0 0
chrX:54815257|54815491 hsa-miR-1233-5p 1 0 0
chrX:54815257|54815491 hsa-miR-4763-3p 1 0 0
chrX:54815257|54815491 hsa-miR-6769b-5p 1 0 0
chrX:54815257|54815491 hsa-miR-6787-5p 1 0 0
chrX:54815257|54815491 hsa-miR-6754-5p 1 0 0
chrX:54815257|54815491 hsa-miR-6756-5p 1 0 0
chrX:54815257|54815491 hsa-miR-1249-5p 1 0 0
chrX:54815257|54815491 hsa-miR-3620-5p 1 0 0
chrX:54815257|54815491 hsa-miR-4728-5p 1 0 0
chrX:54815257|54815491 hsa-miR-6836-5p 1 0 0
chrX:54815257|54815491 hsa-miR-10396b-5p 1 0 0
chrX:54815257|54815491 hsa-miR-1909-3p 1 0 0
chrX:54815257|54815491 hsa-miR-328-5p 1 0 0
chrX:54815257|54815491 hsa-miR-4632-5p 1 0 0
chrX:54815257|54815491 hsa-miR-4649-5p 1 0 0
chrX:54815257|54815491 hsa-miR-4685-5p 1 0 0
chrX:54815257|54815491 hsa-miR-4745-5p 1 0 0
chrX:54815257|54815491 hsa-miR-4749-5p 1 0 0
chrX:54815257|54815491 hsa-miR-6729-5p 1 0 0
chrX:54815257|54815491 hsa-miR-6885-5p 1 0 0
chrX:54815257|54815491 hsa-miR-939-5p 1 0 0
chrX:54815257|54815491 hsa-miR-4758-5p 1 0 0
chrX:54815257|54815491 hsa-miR-6724-5p 1 0 0
chrX:54815257|54815491 hsa-miR-6791-5p 0 1 0
chrX:54815257|54815491 hsa-miR-6762-5p 1 0 0
chrX:54815257|54815491 hsa-miR-10400-3p 0 1 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chrX:54815257|54815491
ORF Type ORF1
Protein Length 36
Nucleotide Length 111
Protein Sequence MLPPGSGLWPRVRYQLRPSCRARQHSPSRAQCPFEL
Nucleotide Sequence CTGCTCCCGCCTGGATCCGGGCTTTGGCCCAGGGTCCGATATCAGCTTCGTCCCAGTTGCAGGGCCCGGCAGCATTCTCCGAGCCGAGCCCAATGCCCATTCGAGCTCTAA
CircID chrX:54815257|54815491
ORF Type ORF2
Protein Length 25
Nucleotide Length 75
Protein Sequence MQPQLQPSNPLPSPLGTELPIPWDP
Nucleotide Sequence CTGCAGCCTCAGCTGCAGCCTTCAAATCCGCTTCCATCGCCTCTCGGTACTGAGCTGCCCATTCCTTGGGATCCT
CircID chrX:54815257|54815491
ORF Type ORF3
Protein Length 77
Nucleotide Length 231
Protein Sequence MGFGFSFCSRLDPGFGPGSDISFVPVAGPGSILRAEPNAHSSSNLGPSLGFSCSLSCSLQIRFHRLSVLSCPFLGIL
Nucleotide Sequence TTGGGCTTTGGCTTTAGCTTCTGCTCCCGCCTGGATCCGGGCTTTGGCCCAGGGTCCGATATCAGCTTCGTCCCAGTTGCAGGGCCCGGCAGCATTCTCCGAGCCGAGCCCAATGCCCATTCGAGCTCTAATCTCGGCCCTAGCCTTGGCTTCAGCTGCAGCCTCAGCTGCAGCCTTCAAATCCGCTTCCATCGCCTCTCGGTACTGAGCTGCCCATTCCTTGGGATCCTT
CircID chrX:54815257|54815491
ORF Type ORF4
Protein Length 66
Nucleotide Length 201
Protein Sequence MALASAPAWIRALAQGPISASSQLQGPAAFSEPSPMPIRALISALALASAAASAAAFKSASIASRY
Nucleotide Sequence TTGGCTTTAGCTTCTGCTCCCGCCTGGATCCGGGCTTTGGCCCAGGGTCCGATATCAGCTTCGTCCCAGTTGCAGGGCCCGGCAGCATTCTCCGAGCCGAGCCCAATGCCCATTCGAGCTCTAATCTCGGCCCTAGCCTTGGCTTCAGCTGCAGCCTCAGCTGCAGCCTTCAAATCCGCTTCCATCGCCTCTCGGTACTGA
CircID chrX:54815257|54815491
ORF Type ORF5
Protein Length 65
Nucleotide Length 195
Protein Sequence MEADLKAAAEAAAEAKARAEIRARMGIGLGSENAAGPCNWDEADIGPWAKARIQAGAEAKAKAQE
Nucleotide Sequence ATGGAAGCGGATTTGAAGGCTGCAGCTGAGGCTGCAGCTGAAGCCAAGGCTAGGGCCGAGATTAGAGCTCGAATGGGCATTGGGCTCGGCTCGGAGAATGCTGCCGGGCCCTGCAACTGGGACGAAGCTGATATCGGACCCTGGGCCAAAGCCCGGATCCAGGCGGGAGCAGAAGCTAAAGCCAAAGCCCAAGAG
CircID chrX:54815257|54815491
ORF Type ORF6
Protein Length 59
Nucleotide Length 177
Protein Sequence MQLRLQLKPRLGPRLELEWALGSARRMLPGPATGTKLISDPGPKPGSRREQKLKPKPKR
Nucleotide Sequence CTGCAGCTGAGGCTGCAGCTGAAGCCAAGGCTAGGGCCGAGATTAGAGCTCGAATGGGCATTGGGCTCGGCTCGGAGAATGCTGCCGGGCCCTGCAACTGGGACGAAGCTGATATCGGACCCTGGGCCAAAGCCCGGATCCAGGCGGGAGCAGAAGCTAAAGCCAAAGCCCAAGAGA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab