CircRNA Information

General Information
circRNA Basic Information
CircID chrX:57072519|57072666
Strand -
CircType exon
Host Gene
Algorism CIRI2;
Sequence TCCAGTCTGATTTCCCTGCCTGCTCCCCCCAAACTCCATGAAAATTGCTACTGTTCAGGTTATCAGTGATCTCCAATGATCATTCAATAAGATCATCAGTGATCTTCAGTGATCATTTATTAATCTCCATCTTTATATATCATCAGTC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chrX:57072519|57072666 hsa-miR-340-5p 0 0 1
chrX:57072519|57072666 hsa-miR-340-3p 0 0 1
chrX:57072519|57072666 hsa-miR-410-5p 0 0 1
chrX:57072519|57072666 hsa-miR-410-3p 0 0 1
chrX:57072519|57072666 hsa-miR-620 0 0 1
chrX:57072519|57072666 hsa-miR-649 0 0 1
chrX:57072519|57072666 hsa-miR-939-5p 0 0 1
chrX:57072519|57072666 hsa-miR-939-3p 0 0 1
chrX:57072519|57072666 hsa-miR-940 0 0 1
chrX:57072519|57072666 hsa-miR-1270 0 0 1
chrX:57072519|57072666 hsa-miR-1275 1 0 1
chrX:57072519|57072666 hsa-miR-142-5p 0 0 1
chrX:57072519|57072666 hsa-miR-490-3p 0 0 1
chrX:57072519|57072666 hsa-miR-490-5p 1 0 1
chrX:57072519|57072666 hsa-miR-1207-5p 0 0 1
chrX:57072519|57072666 hsa-miR-936 1 0 0
chrX:57072519|57072666 hsa-miR-1246 1 0 0
chrX:57072519|57072666 hsa-miR-3175 1 0 0
chrX:57072519|57072666 hsa-miR-3196 1 0 0
chrX:57072519|57072666 hsa-miR-4270 1 0 0
chrX:57072519|57072666 hsa-miR-4498 1 0 0
chrX:57072519|57072666 hsa-miR-4502 1 0 0
chrX:57072519|57072666 hsa-miR-4651 1 0 0
chrX:57072519|57072666 hsa-miR-4673 1 0 0
chrX:57072519|57072666 hsa-miR-4688 1 0 0
chrX:57072519|57072666 hsa-miR-4692 1 0 0
chrX:57072519|57072666 hsa-miR-4706 1 0 0
chrX:57072519|57072666 hsa-miR-4748 1 0 0
chrX:57072519|57072666 hsa-miR-5698 1 0 0
chrX:57072519|57072666 hsa-miR-6081 1 0 0
chrX:57072519|57072666 hsa-miR-6086 1 0 0
chrX:57072519|57072666 hsa-miR-6090 1 0 0
chrX:57072519|57072666 hsa-miR-6734-5p 1 0 0
chrX:57072519|57072666 hsa-miR-6747-5p 1 0 0
chrX:57072519|57072666 hsa-miR-7106-5p 1 0 0
chrX:57072519|57072666 hsa-miR-6825-5p 1 0 0
chrX:57072519|57072666 hsa-miR-6857-5p 1 0 0
chrX:57072519|57072666 hsa-miR-4653-3p 1 0 0
chrX:57072519|57072666 hsa-miR-6890-5p 1 0 0
chrX:57072519|57072666 hsa-miR-3682-3p 1 0 0
chrX:57072519|57072666 hsa-miR-1292-5p 1 0 0
chrX:57072519|57072666 hsa-miR-6772-5p 1 0 0
chrX:57072519|57072666 hsa-miR-6514-5p 1 0 0
chrX:57072519|57072666 hsa-miR-7109-5p 1 0 0
chrX:57072519|57072666 hsa-miR-6740-5p 1 0 0
chrX:57072519|57072666 hsa-miR-193b-5p 1 0 0
chrX:57072519|57072666 hsa-miR-4690-5p 1 0 0
chrX:57072519|57072666 hsa-miR-2681-3p 1 0 0
chrX:57072519|57072666 hsa-miR-3162-5p 1 0 0
chrX:57072519|57072666 hsa-miR-5010-5p 1 0 0
chrX:57072519|57072666 hsa-miR-7112-5p 1 0 0
chrX:57072519|57072666 hsa-miR-214-3p 1 0 0
chrX:57072519|57072666 hsa-miR-3680-3p 1 0 0
chrX:57072519|57072666 hsa-miR-6787-5p 1 0 0
chrX:57072519|57072666 hsa-miR-6812-5p 1 0 0
chrX:57072519|57072666 hsa-miR-6816-5p 1 0 0
chrX:57072519|57072666 hsa-miR-6870-5p 1 0 0
chrX:57072519|57072666 hsa-miR-1343-5p 1 0 0
chrX:57072519|57072666 hsa-miR-6726-5p 1 0 0
chrX:57072519|57072666 hsa-miR-6743-5p 1 0 0
chrX:57072519|57072666 hsa-miR-6756-5p 1 0 0
chrX:57072519|57072666 hsa-miR-6803-5p 1 0 0
chrX:57072519|57072666 hsa-miR-11181-3p 1 0 0
chrX:57072519|57072666 hsa-miR-1249-5p 1 0 0
chrX:57072519|57072666 hsa-miR-6751-5p 1 0 0
chrX:57072519|57072666 hsa-miR-6879-5p 1 0 0
chrX:57072519|57072666 hsa-miR-7111-5p 1 0 0
chrX:57072519|57072666 hsa-miR-4728-5p 1 0 0
chrX:57072519|57072666 hsa-miR-6862-5p 1 0 0
chrX:57072519|57072666 hsa-miR-328-5p 1 0 0
chrX:57072519|57072666 hsa-miR-6777-5p 1 0 0
chrX:57072519|57072666 hsa-miR-6795-5p 1 0 0
chrX:57072519|57072666 hsa-miR-6846-5p 1 0 0
chrX:57072519|57072666 hsa-miR-6887-5p 1 0 0
chrX:57072519|57072666 hsa-miR-6889-5p 1 0 0
chrX:57072519|57072666 hsa-miR-4436b-3p 1 0 0
chrX:57072519|57072666 hsa-miR-4697-5p 1 0 0
chrX:57072519|57072666 hsa-miR-4723-5p 1 0 0
chrX:57072519|57072666 hsa-miR-6885-5p 1 0 0
chrX:57072519|57072666 hsa-miR-6511b-5p 1 0 0
chrX:57072519|57072666 hsa-miR-3198 1 0 0
chrX:57072519|57072666 hsa-miR-6731-5p 1 0 0
chrX:57072519|57072666 hsa-miR-6855-5p 1 0 0
chrX:57072519|57072666 hsa-miR-3679-5p 1 0 0
chrX:57072519|57072666 hsa-miR-3619-5p 1 0 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chrX:57072519|57072666
ORF Type ORF1
Protein Length 34
Nucleotide Length 102
Protein Sequence MLLFRLSVISNDHSIRSSVIFSDHLLISIFIYHQ
Nucleotide Sequence TTGCTACTGTTCAGGTTATCAGTGATCTCCAATGATCATTCAATAAGATCATCAGTGATCTTCAGTGATCATTTATTAATCTCCATCTTTATATATCATCAG
CircID chrX:57072519|57072666
ORF Type ORF2
Protein Length 25
Nucleotide Length 75
Protein Sequence MEITDNLNSSNFHGVWGEQAGKSDW
Nucleotide Sequence TTGGAGATCACTGATAACCTGAACAGTAGCAATTTTCATGGAGTTTGGGGGGAGCAGGCAGGGAAATCAGACTGG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab