CircRNA Information

General Information
circRNA Basic Information
CircID chrX:65740805|65741051
Strand +
CircType exon
Host Gene ENSG00000147065.15;
Algorism CIRI2;
Sequence CTGAGAGGGTTGAGTAAACTTGGATCAGGGCACAGGCTTCTCTCACCATACTCAGCTTTTTGCACTCACTCCCTAGTTGAGCCTACTGGCATCAAGCTCTAGATGCCAAGGCTGGGATGGCTGTGGAGCAGGAGCTATGGCCCAAGTAGCTCTGAGAGGGGAAGAGACCTAAAACCCCTAGCAGGGAAAATACTGACGCTAGGTGTGAACATATCCTCTCTTTTCACAAGAGTCCTGATGGGGCTGG
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chrX:65740805|65741051 hsa-miR-19a-5p 0 0 1
chrX:65740805|65741051 hsa-miR-19a-3p 0 0 1
chrX:65740805|65741051 hsa-miR-130a-5p 0 0 1
chrX:65740805|65741051 hsa-miR-130a-3p 0 0 1
chrX:65740805|65741051 hsa-miR-320a-5p 0 0 1
chrX:65740805|65741051 hsa-miR-320a-3p 0 0 1
chrX:65740805|65741051 hsa-miR-301a-5p 0 0 1
chrX:65740805|65741051 hsa-miR-301a-3p 0 0 1
chrX:65740805|65741051 hsa-miR-130b-5p 0 0 1
chrX:65740805|65741051 hsa-miR-130b-3p 0 0 1
chrX:65740805|65741051 hsa-miR-370-5p 0 0 1
chrX:65740805|65741051 hsa-miR-370-3p 0 0 1
chrX:65740805|65741051 hsa-miR-377-5p 0 0 1
chrX:65740805|65741051 hsa-miR-377-3p 0 0 1
chrX:65740805|65741051 hsa-miR-496 0 0 1
chrX:65740805|65741051 hsa-miR-581 0 0 1
chrX:65740805|65741051 hsa-miR-635 0 0 1
chrX:65740805|65741051 hsa-miR-640 0 0 1
chrX:65740805|65741051 hsa-miR-454-5p 0 0 1
chrX:65740805|65741051 hsa-miR-454-3p 0 0 1
chrX:65740805|65741051 hsa-miR-874-5p 0 0 1
chrX:65740805|65741051 hsa-miR-874-3p 0 0 1
chrX:65740805|65741051 hsa-miR-890 0 0 1
chrX:65740805|65741051 hsa-miR-888-5p 0 0 1
chrX:65740805|65741051 hsa-miR-888-3p 0 0 1
chrX:65740805|65741051 hsa-miR-190b-5p 0 0 1
chrX:65740805|65741051 hsa-miR-190b-3p 0 0 1
chrX:65740805|65741051 hsa-miR-301b-5p 0 0 1
chrX:65740805|65741051 hsa-miR-301b-3p 0 0 1
chrX:65740805|65741051 hsa-miR-1228-5p 0 0 1
chrX:65740805|65741051 hsa-miR-1228-3p 0 0 1
chrX:65740805|65741051 hsa-miR-1236-5p 0 0 1
chrX:65740805|65741051 hsa-miR-1236-3p 0 0 1
chrX:65740805|65741051 hsa-miR-1321 0 0 1
chrX:65740805|65741051 hsa-miR-146b-3p 0 0 1
chrX:65740805|65741051 hsa-miR-518d-5p 0 0 1
chrX:65740805|65741051 hsa-miR-519b-5p 0 0 1
chrX:65740805|65741051 hsa-miR-519c-5p 0 0 1
chrX:65740805|65741051 hsa-miR-520c-5p 0 0 1
chrX:65740805|65741051 hsa-miR-320b 0 1 1
chrX:65740805|65741051 hsa-miR-320c 0 1 1
chrX:65740805|65741051 hsa-miR-320d 0 1 1
chrX:65740805|65741051 hsa-miR-1274a 0 0 1
chrX:65740805|65741051 hsa-miR-19b 0 0 1
chrX:65740805|65741051 hsa-miR-526a 0 0 1
chrX:65740805|65741051 hsa-miR-220a 0 0 1
chrX:65740805|65741051 hsa-miR-1185 0 0 1
chrX:65740805|65741051 hsa-miR-190 0 0 1
chrX:65740805|65741051 hsa-miR-637 0 1 0
chrX:65740805|65741051 hsa-miR-3174 0 1 0
chrX:65740805|65741051 hsa-miR-3183 0 1 0
chrX:65740805|65741051 hsa-miR-4429 0 1 0
chrX:65740805|65741051 hsa-miR-7977 0 1 0
chrX:65740805|65741051 hsa-miR-8077 0 1 0
chrX:65740805|65741051 hsa-miR-12126 0 1 0
chrX:65740805|65741051 hsa-miR-212-5p 0 1 0
chrX:65740805|65741051 hsa-miR-6720-5p 0 1 0
chrX:65740805|65741051 hsa-miR-3189-5p 0 1 0
chrX:65740805|65741051 hsa-miR-30c-2-3p 0 1 0
chrX:65740805|65741051 hsa-miR-3127-5p 0 1 0
chrX:65740805|65741051 hsa-miR-3162-5p 0 1 0
chrX:65740805|65741051 hsa-miR-6811-3p 0 1 0
chrX:65740805|65741051 hsa-miR-6826-3p 0 1 0
chrX:65740805|65741051 hsa-miR-1914-5p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chrX:65740805|65741051
ORF Type ORF1
Protein Length 33
Nucleotide Length 102
Protein Sequence LRGLSKLGSGHRLLSPYSAFCTHSLVEPTGIKL
Nucleotide Sequence CTGAGAGGGTTGAGTAAACTTGGATCAGGGCACAGGCTTCTCTCACCATACTCAGCTTTTTGCACTCACTCCCTAGTTGAGCCTACTGGCATCAAGCTCTAG
CircID chrX:65740805|65741051
ORF Type ORF2
Protein Length 48
Nucleotide Length 144
Protein Sequence MPRLGWLWSRSYGPSSSERGRDLKPLAGKILTLGVNISSLFTRVLMGL
Nucleotide Sequence ATGCCAAGGCTGGGATGGCTGTGGAGCAGGAGCTATGGCCCAAGTAGCTCTGAGAGGGGAAGAGACCTAAAACCCCTAGCAGGGAAAATACTGACGCTAGGTGTGAACATATCCTCTCTTTTCACAAGAGTCCTGATGGGGCTG
CircID chrX:65740805|65741051
ORF Type ORF3
Protein Length 31
Nucleotide Length 96
Protein Sequence MSLLASSSRCQGWDGCGAGAMAQVALRGEET
Nucleotide Sequence TTGAGCCTACTGGCATCAAGCTCTAGATGCCAAGGCTGGGATGGCTGTGGAGCAGGAGCTATGGCCCAAGTAGCTCTGAGAGGGGAAGAGACCTAA
CircID chrX:65740805|65741051
ORF Type ORF4
Protein Length 30
Nucleotide Length 93
Protein Sequence MLGVLGLFPSQSYLGHSSCSTAIPALASRA
Nucleotide Sequence CTGCTAGGGGTTTTAGGTCTCTTCCCCTCTCAGAGCTACTTGGGCCATAGCTCCTGCTCCACAGCCATCCCAGCCTTGGCATCTAGAGCTTGA
CircID chrX:65740805|65741051
ORF Type ORF5
Protein Length 25
Nucleotide Length 78
Protein Sequence MFTPSVSIFPARGFRSLPLSELLGP
Nucleotide Sequence ATGTTCACACCTAGCGTCAGTATTTTCCCTGCTAGGGGTTTTAGGTCTCTTCCCCTCTCAGAGCTACTTGGGCCATAG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab