CircRNA Information

General Information
circRNA Basic Information
CircID chrX:71463863|71464166
Strand -
CircType exon
Host Gene ENSG00000147133.14;
Algorism CIRI2;
Sequence CCAAGACACAAGCTTCAGCAGCATCGGTGGGTATGAGGTATCAGAGGAGGAAGAAGATGAGGAGGAGGAAGAGCAGCGCTCTGGGCCGAGCGTACTAAGCCAGGTCCACCTGTCAGAGGACGAGGAGGACAGTGAGGATTTCCACTCCATTGCTGGGGACAGTGACTTGGACTCTGATGAATGAGGCTTCCTTTGGGCCTCCTTGGTCAGCCTTCCCTGTTCTCCAGCCTAGGTGGTTCACCTTTCCCCAATTTGTTCATATTTGTACAGTATCTGATCCTGAAATCATGAAATTAACTAACAC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chrX:71463863|71464166 hsa-miR-224-5p 0 0 1
chrX:71463863|71464166 hsa-miR-224-3p 0 0 1
chrX:71463863|71464166 hsa-miR-122-5p 0 0 1
chrX:71463863|71464166 hsa-miR-122-3p 0 0 1
chrX:71463863|71464166 hsa-miR-383-5p 0 0 1
chrX:71463863|71464166 hsa-miR-383-3p 0 0 1
chrX:71463863|71464166 hsa-miR-431-5p 0 0 1
chrX:71463863|71464166 hsa-miR-431-3p 0 0 1
chrX:71463863|71464166 hsa-miR-433-5p 0 0 1
chrX:71463863|71464166 hsa-miR-433-3p 0 0 1
chrX:71463863|71464166 hsa-miR-492 0 0 1
chrX:71463863|71464166 hsa-miR-552-5p 0 0 1
chrX:71463863|71464166 hsa-miR-552-3p 0 0 1
chrX:71463863|71464166 hsa-miR-581 0 0 1
chrX:71463863|71464166 hsa-miR-592 0 0 1
chrX:71463863|71464166 hsa-miR-599 0 0 1
chrX:71463863|71464166 hsa-miR-631 0 0 1
chrX:71463863|71464166 hsa-miR-645 0 0 1
chrX:71463863|71464166 hsa-miR-1183 1 0 1
chrX:71463863|71464166 hsa-miR-1236-5p 0 0 1
chrX:71463863|71464166 hsa-miR-1236-3p 0 0 1
chrX:71463863|71464166 hsa-miR-1208 0 0 1
chrX:71463863|71464166 hsa-miR-127-5p 0 0 1
chrX:71463863|71464166 hsa-miR-671-5p 0 0 1
chrX:71463863|71464166 hsa-miR-875-5p 0 0 1
chrX:71463863|71464166 hsa-miR-574-3p 0 0 1
chrX:71463863|71464166 hsa-miR-1280 0 0 1
chrX:71463863|71464166 hsa-miR-762 1 0 0
chrX:71463863|71464166 hsa-miR-1281 1 0 0
chrX:71463863|71464166 hsa-miR-1322 1 0 0
chrX:71463863|71464166 hsa-miR-1538 1 0 0
chrX:71463863|71464166 hsa-miR-2110 1 0 0
chrX:71463863|71464166 hsa-miR-4268 1 0 0
chrX:71463863|71464166 hsa-miR-4279 1 0 0
chrX:71463863|71464166 hsa-miR-3921 1 0 0
chrX:71463863|71464166 hsa-miR-4498 1 0 0
chrX:71463863|71464166 hsa-miR-5193 1 0 0
chrX:71463863|71464166 hsa-miR-5572 1 0 0
chrX:71463863|71464166 hsa-miR-5787 1 0 0
chrX:71463863|71464166 hsa-miR-6749-3p 1 0 0
chrX:71463863|71464166 hsa-miR-4747-3p 1 0 0
chrX:71463863|71464166 hsa-miR-4665-3p 1 0 0
chrX:71463863|71464166 hsa-miR-3150a-3p 1 0 0
chrX:71463863|71464166 hsa-miR-6857-5p 1 0 0
chrX:71463863|71464166 hsa-miR-6881-3p 1 0 0
chrX:71463863|71464166 hsa-miR-6875-3p 1 0 0
chrX:71463863|71464166 hsa-miR-197-5p 1 0 0
chrX:71463863|71464166 hsa-miR-6845-3p 1 0 0
chrX:71463863|71464166 hsa-miR-877-3p 1 0 0
chrX:71463863|71464166 hsa-miR-4655-3p 1 0 0
chrX:71463863|71464166 hsa-miR-6514-5p 1 0 0
chrX:71463863|71464166 hsa-miR-6810-5p 1 0 0
chrX:71463863|71464166 hsa-miR-6740-3p 1 0 0
chrX:71463863|71464166 hsa-miR-4436b-5p 1 0 0
chrX:71463863|71464166 hsa-miR-5001-3p 1 0 0
chrX:71463863|71464166 hsa-miR-3667-3p 1 0 0
chrX:71463863|71464166 hsa-miR-6809-3p 1 0 0
chrX:71463863|71464166 hsa-miR-7111-3p 1 0 0
chrX:71463863|71464166 hsa-miR-6830-3p 1 0 0
chrX:71463863|71464166 hsa-miR-1237-3p 1 0 0
chrX:71463863|71464166 hsa-miR-6743-3p 1 0 0
chrX:71463863|71464166 hsa-miR-6828-3p 1 0 0
chrX:71463863|71464166 hsa-miR-4778-3p 1 0 0
chrX:71463863|71464166 hsa-miR-1238-3p 1 0 0
chrX:71463863|71464166 hsa-miR-6867-3p 1 0 0
chrX:71463863|71464166 hsa-miR-6837-3p 1 0 0
chrX:71463863|71464166 hsa-miR-6758-3p 1 0 0
chrX:71463863|71464166 hsa-miR-5088-3p 1 0 0
chrX:71463863|71464166 hsa-miR-6795-3p 1 0 0
chrX:71463863|71464166 hsa-miR-3151-3p 1 0 0
chrX:71463863|71464166 hsa-miR-6880-3p 1 0 0
chrX:71463863|71464166 hsa-miR-3124-3p 1 0 0
chrX:71463863|71464166 hsa-miR-6883-3p 1 0 0
chrX:71463863|71464166 hsa-miR-5584-3p 1 0 0
chrX:71463863|71464166 hsa-miR-6515-3p 1 0 0
chrX:71463863|71464166 hsa-miR-6812-3p 1 0 0
chrX:71463863|71464166 hsa-miR-4777-3p 1 0 0
chrX:71463863|71464166 hsa-miR-6812-5p 1 0 0
chrX:71463863|71464166 hsa-miR-1343-5p 1 0 0
chrX:71463863|71464166 hsa-miR-6763-5p 1 0 0
chrX:71463863|71464166 hsa-miR-3127-3p 1 0 0
chrX:71463863|71464166 hsa-miR-320a-5p 1 0 0
chrX:71463863|71464166 hsa-miR-6754-3p 1 0 0
chrX:71463863|71464166 hsa-miR-6852-3p 1 0 0
chrX:71463863|71464166 hsa-miR-5196-5p 1 0 0
chrX:71463863|71464166 hsa-miR-6780b-5p 1 0 0
chrX:71463863|71464166 hsa-miR-4685-5p 1 0 0
chrX:71463863|71464166 hsa-miR-4665-5p 1 0 0
chrX:71463863|71464166 hsa-miR-4716-3p 1 0 0
chrX:71463863|71464166 hsa-miR-2682-3p 1 0 0
chrX:71463863|71464166 hsa-miR-6756-3p 1 0 0
chrX:71463863|71464166 hsa-miR-6792-3p 1 0 0
chrX:71463863|71464166 hsa-miR-6805-3p 1 0 0
chrX:71463863|71464166 hsa-miR-6829-3p 1 0 0
chrX:71463863|71464166 hsa-miR-3059-5p 1 0 0
chrX:71463863|71464166 hsa-miR-4723-3p 1 0 0
chrX:71463863|71464166 hsa-miR-6891-3p 1 0 0
chrX:71463863|71464166 hsa-miR-4691-5p 1 0 0
chrX:71463863|71464166 hsa-miR-6737-3p 1 0 0
chrX:71463863|71464166 hsa-miR-6843-3p 1 0 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chrX:71463863|71464166
ORF Type ORF1
Protein Length 36
Nucleotide Length 111
Protein Sequence MRLPLGLLGQPSLFSSLGGSPFPNLFIFVQYLILKS
Nucleotide Sequence ATGAGGCTTCCTTTGGGCCTCCTTGGTCAGCCTTCCCTGTTCTCCAGCCTAGGTGGTTCACCTTTCCCCAATTTGTTCATATTTGTACAGTATCTGATCCTGAAATCATGA
CircID chrX:71463863|71464166
ORF Type ORF2
Protein Length 51
Nucleotide Length 153
Protein Sequence MLGTVTWTLMNEASFGPPWSAFPVLQPRWFTFPQFVHICTVSDPEIMKLTN
Nucleotide Sequence TTGCTGGGGACAGTGACTTGGACTCTGATGAATGAGGCTTCCTTTGGGCCTCCTTGGTCAGCCTTCCCTGTTCTCCAGCCTAGGTGGTTCACCTTTCCCCAATTTGTTCATATTTGTACAGTATCTGATCCTGAAATCATGAAATTAACTAAC
CircID chrX:71463863|71464166
ORF Type ORF3
Protein Length 70
Nucleotide Length 210
Protein Sequence MTKEAQRKPHSSESKSLSPAMEWKSSLSSSSSDRWTWLSTLGPERCSSSSSSSSSSDTSYPPMLLKLVSW
Nucleotide Sequence CTGACCAAGGAGGCCCAAAGGAAGCCTCATTCATCAGAGTCCAAGTCACTGTCCCCAGCAATGGAGTGGAAATCCTCACTGTCCTCCTCGTCCTCTGACAGGTGGACCTGGCTTAGTACGCTCGGCCCAGAGCGCTGCTCTTCCTCCTCCTCATCTTCTTCCTCCTCTGATACCTCATACCCACCGATGCTGCTGAAGCTTGTGTCTTGG
CircID chrX:71463863|71464166
ORF Type ORF4
Protein Length 33
Nucleotide Length 102
Protein Sequence MTGGPGLVRSAQSAALPPPHLLPPLIPHTHRCC
Nucleotide Sequence CTGACAGGTGGACCTGGCTTAGTACGCTCGGCCCAGAGCGCTGCTCTTCCTCCTCCTCATCTTCTTCCTCCTCTGATACCTCATACCCACCGATGCTGCTGA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab