CircRNA Information

General Information
circRNA Basic Information
CircID chrX:73846096|73846386
Strand +
CircType exon
Host Gene ENSG00000229807.8;
Algorism CIRI2;
Sequence CTTTCCCTTCCAGCAGGGAGTGCCCACTCCATAAGACTCTCACATTTGGACAGTCAAGGTGCGTAATTGTTAAGTGAACACAACCATGCACCTTAGACATGGATTTGCATAACTACACACAGCTCAACCTATCTGAATAAAATCCTACTCTCAGACCCCTTTTGCAGTACAGCAGGGGTGCTGATCACCAAGGCCCTTTTTCCTGGCCTGGTATGCGTGTGATTATGTTTGTCCCGGTTCCTGTGTATTAGACATGGAAGCCTCCCCTGCCACACTCCACCCCCAATCTTC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chrX:73846096|73846386 hsa-miR-18a-5p 0 0 1
chrX:73846096|73846386 hsa-miR-18a-3p 0 0 1
chrX:73846096|73846386 hsa-miR-217-5p 0 0 1
chrX:73846096|73846386 hsa-miR-217-3p 0 0 1
chrX:73846096|73846386 hsa-miR-122-5p 0 0 1
chrX:73846096|73846386 hsa-miR-122-3p 0 0 1
chrX:73846096|73846386 hsa-miR-34b-5p 0 0 1
chrX:73846096|73846386 hsa-miR-34b-3p 0 0 1
chrX:73846096|73846386 hsa-miR-370-5p 0 0 1
chrX:73846096|73846386 hsa-miR-370-3p 0 0 1
chrX:73846096|73846386 hsa-miR-383-5p 0 0 1
chrX:73846096|73846386 hsa-miR-383-3p 0 0 1
chrX:73846096|73846386 hsa-miR-18b-5p 0 0 1
chrX:73846096|73846386 hsa-miR-18b-3p 0 0 1
chrX:73846096|73846386 hsa-miR-558 0 0 1
chrX:73846096|73846386 hsa-miR-608 1 1 1
chrX:73846096|73846386 hsa-miR-655-5p 0 0 1
chrX:73846096|73846386 hsa-miR-655-3p 0 0 1
chrX:73846096|73846386 hsa-miR-873-5p 0 0 1
chrX:73846096|73846386 hsa-miR-873-3p 0 0 1
chrX:73846096|73846386 hsa-miR-924 0 1 1
chrX:73846096|73846386 hsa-miR-943 0 0 1
chrX:73846096|73846386 hsa-miR-1287-5p 0 0 1
chrX:73846096|73846386 hsa-miR-1287-3p 0 0 1
chrX:73846096|73846386 hsa-miR-1290 0 0 1
chrX:73846096|73846386 hsa-miR-1275 0 0 1
chrX:73846096|73846386 hsa-miR-574-5p 0 1 1
chrX:73846096|73846386 hsa-miR-1207-5p 1 1 1
chrX:73846096|73846386 hsa-miR-509-3-5p 0 0 1
chrX:73846096|73846386 hsa-miR-509-5p 0 0 1
chrX:73846096|73846386 hsa-miR-491-3p 0 0 1
chrX:73846096|73846386 hsa-miR-521 0 0 1
chrX:73846096|73846386 hsa-miR-644 0 0 1
chrX:73846096|73846386 hsa-miR-453 0 0 1
chrX:73846096|73846386 hsa-miR-663a 1 0 0
chrX:73846096|73846386 hsa-miR-1182 0 1 0
chrX:73846096|73846386 hsa-miR-1268a 1 0 0
chrX:73846096|73846386 hsa-miR-3147 1 0 0
chrX:73846096|73846386 hsa-miR-3188 0 1 0
chrX:73846096|73846386 hsa-miR-4298 1 0 0
chrX:73846096|73846386 hsa-miR-3911 1 0 0
chrX:73846096|73846386 hsa-miR-1268b 1 0 0
chrX:73846096|73846386 hsa-miR-4463 1 0 0
chrX:73846096|73846386 hsa-miR-4497 1 0 0
chrX:73846096|73846386 hsa-miR-2392 1 0 0
chrX:73846096|73846386 hsa-miR-4507 1 0 0
chrX:73846096|73846386 hsa-miR-4512 0 1 0
chrX:73846096|73846386 hsa-miR-4651 1 1 0
chrX:73846096|73846386 hsa-miR-4672 0 1 0
chrX:73846096|73846386 hsa-miR-4741 1 0 0
chrX:73846096|73846386 hsa-miR-4767 1 0 0
chrX:73846096|73846386 hsa-miR-5090 1 0 0
chrX:73846096|73846386 hsa-miR-5194 1 1 0
chrX:73846096|73846386 hsa-miR-5572 1 0 0
chrX:73846096|73846386 hsa-miR-5787 1 0 0
chrX:73846096|73846386 hsa-miR-7150 0 1 0
chrX:73846096|73846386 hsa-miR-4433b-3p 1 0 0
chrX:73846096|73846386 hsa-miR-4731-5p 1 0 0
chrX:73846096|73846386 hsa-miR-504-3p 1 0 0
chrX:73846096|73846386 hsa-miR-6747-5p 1 0 0
chrX:73846096|73846386 hsa-miR-1972 0 1 0
chrX:73846096|73846386 hsa-miR-6799-5p 1 0 0
chrX:73846096|73846386 hsa-miR-6089 1 0 0
chrX:73846096|73846386 hsa-miR-6880-5p 0 1 0
chrX:73846096|73846386 hsa-miR-7847-3p 1 0 0
chrX:73846096|73846386 hsa-miR-6746-5p 1 0 0
chrX:73846096|73846386 hsa-miR-4655-5p 1 0 0
chrX:73846096|73846386 hsa-miR-197-5p 1 0 0
chrX:73846096|73846386 hsa-miR-6768-5p 1 1 0
chrX:73846096|73846386 hsa-miR-3180-3p 1 0 0
chrX:73846096|73846386 hsa-miR-6732-5p 1 0 0
chrX:73846096|73846386 hsa-miR-6782-5p 1 0 0
chrX:73846096|73846386 hsa-miR-6514-5p 1 1 0
chrX:73846096|73846386 hsa-miR-5006-5p 1 1 0
chrX:73846096|73846386 hsa-miR-6786-5p 1 0 0
chrX:73846096|73846386 hsa-miR-6835-5p 1 0 0
chrX:73846096|73846386 hsa-miR-1229-5p 1 0 0
chrX:73846096|73846386 hsa-miR-6784-5p 1 0 0
chrX:73846096|73846386 hsa-miR-4717-3p 1 0 0
chrX:73846096|73846386 hsa-miR-3202 0 1 0
chrX:73846096|73846386 hsa-miR-4787-5p 1 0 0
chrX:73846096|73846386 hsa-miR-6824-5p 1 0 0
chrX:73846096|73846386 hsa-miR-1225-5p 1 0 0
chrX:73846096|73846386 hsa-miR-2115-5p 0 1 0
chrX:73846096|73846386 hsa-miR-19b-3p 0 1 0
chrX:73846096|73846386 hsa-miR-3617-3p 0 1 0
chrX:73846096|73846386 hsa-miR-5011-3p 0 1 0
chrX:73846096|73846386 hsa-miR-4763-3p 1 1 0
chrX:73846096|73846386 hsa-miR-6812-5p 1 1 0
chrX:73846096|73846386 hsa-miR-6816-5p 1 0 0
chrX:73846096|73846386 hsa-miR-6775-5p 1 0 0
chrX:73846096|73846386 hsa-miR-5001-5p 1 0 0
chrX:73846096|73846386 hsa-miR-6737-5p 1 0 0
chrX:73846096|73846386 hsa-miR-6752-5p 1 1 0
chrX:73846096|73846386 hsa-miR-6756-5p 1 1 0
chrX:73846096|73846386 hsa-miR-6803-5p 1 1 0
chrX:73846096|73846386 hsa-miR-6819-5p 1 0 0
chrX:73846096|73846386 hsa-miR-6842-5p 1 1 0
chrX:73846096|73846386 hsa-miR-6851-5p 1 0 0
chrX:73846096|73846386 hsa-miR-7110-5p 1 1 0
chrX:73846096|73846386 hsa-miR-6751-5p 1 1 0
chrX:73846096|73846386 hsa-miR-6763-5p 1 0 0
chrX:73846096|73846386 hsa-miR-6808-5p 1 0 0
chrX:73846096|73846386 hsa-miR-7111-5p 1 0 0
chrX:73846096|73846386 hsa-miR-10396b-5p 1 0 0
chrX:73846096|73846386 hsa-miR-10526-3p 1 1 0
chrX:73846096|73846386 hsa-miR-4745-5p 1 1 0
chrX:73846096|73846386 hsa-miR-4749-5p 1 0 0
chrX:73846096|73846386 hsa-miR-4758-5p 1 0 0
chrX:73846096|73846386 hsa-miR-4769-5p 1 0 0
chrX:73846096|73846386 hsa-miR-10394-3p 1 0 0
chrX:73846096|73846386 hsa-miR-892c-5p 1 1 0
chrX:73846096|73846386 hsa-miR-19a-3p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chrX:73846096|73846386
ORF Type ORF1
Protein Length 29
Nucleotide Length 90
Protein Sequence MNKILLSDPFCSTAGVLITKALFPGLVCV
Nucleotide Sequence CTGAATAAAATCCTACTCTCAGACCCCTTTTGCAGTACAGCAGGGGTGCTGATCACCAAGGCCCTTTTTCCTGGCCTGGTATGCGTGTGA
CircID chrX:73846096|73846386
ORF Type ORF2
Protein Length 29
Nucleotide Length 87
Protein Sequence MAWYACDYVCPGSCVLDMEASPATLHPQS
Nucleotide Sequence CTGGCCTGGTATGCGTGTGATTATGTTTGTCCCGGTTCCTGTGTATTAGACATGGAAGCCTCCCCTGCCACACTCCACCCCCAATCT
CircID chrX:73846096|73846386
ORF Type ORF3
Protein Length 29
Nucleotide Length 90
Protein Sequence MQYSRGADHQGPFSWPGMRVIMFVPVPVY
Nucleotide Sequence TTGCAGTACAGCAGGGGTGCTGATCACCAAGGCCCTTTTTCCTGGCCTGGTATGCGTGTGATTATGTTTGTCCCGGTTCCTGTGTATTAG
CircID chrX:73846096|73846386
ORF Type ORF4
Protein Length 33
Nucleotide Length 99
Protein Sequence MSKVHGCVHLTITHLDCPNVRVLWSGHSLLEGK
Nucleotide Sequence ATGTCTAAGGTGCATGGTTGTGTTCACTTAACAATTACGCACCTTGACTGTCCAAATGTGAGAGTCTTATGGAGTGGGCACTCCCTGCTGGAAGGGAAA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab