CircRNA Information

General Information
circRNA Basic Information
CircID chrY:12853010|12853179
Strand +
CircType exon
Host Gene
Algorism CIRI2;
Sequence CGCAGCTCAGCAAGGTCTGCTGCCTCTAGACTCCACCTCTGCGGGCAGGGCTTAGCTGAACACAAGGCAGCAGATAACTTCTGCAGACTTAAACATCCCTGTCTGACAGCTCTGAAGAGAGCTGTGGTTCTACCAACACAGTGTTTGAGCTCTGAGAATGGACAGTTTGC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chrY:12853010|12853179 hsa-miR-141-5p 0 0 1
chrY:12853010|12853179 hsa-miR-141-3p 0 0 1
chrY:12853010|12853179 hsa-miR-200a-5p 0 0 1
chrY:12853010|12853179 hsa-miR-200a-3p 0 0 1
chrY:12853010|12853179 hsa-miR-379-5p 0 0 1
chrY:12853010|12853179 hsa-miR-379-3p 0 0 1
chrY:12853010|12853179 hsa-miR-558 0 0 1
chrY:12853010|12853179 hsa-miR-581 0 1 1
chrY:12853010|12853179 hsa-miR-1264 0 0 1
chrY:12853010|12853179 hsa-miR-298 1 0 1
chrY:12853010|12853179 hsa-miR-892a 0 0 1
chrY:12853010|12853179 hsa-miR-922 0 0 1
chrY:12853010|12853179 hsa-miR-1236-5p 0 0 1
chrY:12853010|12853179 hsa-miR-1236-3p 0 0 1
chrY:12853010|12853179 hsa-miR-1205 0 0 1
chrY:12853010|12853179 hsa-miR-548g-5p 0 0 1
chrY:12853010|12853179 hsa-miR-548g-3p 0 0 1
chrY:12853010|12853179 hsa-miR-1324 0 0 1
chrY:12853010|12853179 hsa-miR-1827 0 1 1
chrY:12853010|12853179 hsa-miR-1184 0 0 1
chrY:12853010|12853179 hsa-miR-1289 0 0 1
chrY:12853010|12853179 hsa-miR-140-3p 0 0 1
chrY:12853010|12853179 hsa-miR-628-5p 0 0 1
chrY:12853010|12853179 hsa-miR-518d-5p 0 1 1
chrY:12853010|12853179 hsa-miR-519b-5p 0 1 1
chrY:12853010|12853179 hsa-miR-519c-5p 0 1 1
chrY:12853010|12853179 hsa-miR-520c-5p 0 1 1
chrY:12853010|12853179 hsa-miR-371-5p 0 0 1
chrY:12853010|12853179 hsa-miR-526a 0 0 1
chrY:12853010|12853179 hsa-miR-429 0 1 0
chrY:12853010|12853179 hsa-miR-608 1 0 0
chrY:12853010|12853179 hsa-miR-1976 1 0 0
chrY:12853010|12853179 hsa-miR-4294 0 1 0
chrY:12853010|12853179 hsa-miR-4309 0 1 0
chrY:12853010|12853179 hsa-miR-4257 0 1 0
chrY:12853010|12853179 hsa-miR-4518 0 1 0
chrY:12853010|12853179 hsa-miR-4540 1 0 0
chrY:12853010|12853179 hsa-miR-4654 1 0 0
chrY:12853010|12853179 hsa-miR-4686 0 1 0
chrY:12853010|12853179 hsa-miR-6071 0 1 0
chrY:12853010|12853179 hsa-miR-12114 0 1 0
chrY:12853010|12853179 hsa-miR-12115 0 1 0
chrY:12853010|12853179 hsa-miR-154-5p 0 1 0
chrY:12853010|12853179 hsa-miR-124-5p 0 1 0
chrY:12853010|12853179 hsa-miR-1233-3p 1 0 0
chrY:12853010|12853179 hsa-miR-6880-5p 1 1 0
chrY:12853010|12853179 hsa-miR-6882-3p 1 0 0
chrY:12853010|12853179 hsa-miR-6786-5p 1 0 0
chrY:12853010|12853179 hsa-miR-5088-5p 0 1 0
chrY:12853010|12853179 hsa-miR-4690-5p 0 1 0
chrY:12853010|12853179 hsa-let-7i-5p 0 1 0
chrY:12853010|12853179 hsa-miR-6752-3p 0 1 0
chrY:12853010|12853179 hsa-miR-3670 0 1 0
chrY:12853010|12853179 hsa-miR-520g-5p 0 1 0
chrY:12853010|12853179 hsa-miR-3173-5p 0 1 0
chrY:12853010|12853179 hsa-miR-4763-3p 1 0 0
chrY:12853010|12853179 hsa-miR-6851-5p 1 1 0
chrY:12853010|12853179 hsa-miR-449c-5p 0 1 0
chrY:12853010|12853179 hsa-miR-1266-5p 1 1 0
chrY:12853010|12853179 hsa-miR-3198 0 1 0
chrY:12853010|12853179 hsa-miR-1199-5p 1 0 0
chrY:12853010|12853179 hsa-miR-518e-5p 0 1 0
chrY:12853010|12853179 hsa-miR-518f-5p 0 1 0
chrY:12853010|12853179 hsa-miR-519a-5p 0 1 0
chrY:12853010|12853179 hsa-miR-522-5p 0 1 0
chrY:12853010|12853179 hsa-miR-523-5p 0 1 0
chrY:12853010|12853179 hsa-miR-526a-5p 0 1 0
chrY:12853010|12853179 hsa-miR-371a-5p 0 1 0
chrY:12853010|12853179 hsa-miR-655-5p 0 1 0
chrY:12853010|12853179 hsa-miR-548b-3p 0 1 0
Target Genes
       

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Target miRNA Expression in different cancers

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circRNA Open Reading Frame (ORF)
CircID chrY:12853010|12853179
ORF Type ORF1
Protein Length 28
Nucleotide Length 84
Protein Sequence MQKLSAALCSAKPCPQRWSLEAADLAEL
Nucleotide Sequence CTGCAGAAGTTATCTGCTGCCTTGTGTTCAGCTAAGCCCTGCCCGCAGAGGTGGAGTCTAGAGGCAGCAGACCTTGCTGAGCTG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab