miRNA Card

miRNA General Information
miRNA ID hsa-miR-3171
Description Homo sapiens miR-3171 stem-loop
Comment None
Experiment Illumina [1-2], Northern [3]
Sequence AGAUGUAUGGAAUCUGUAUAUAUC
miRNA Expression in different cancers

    by mir_boxplot.py

circRNA-miRNA-gene regulatory network

Note about Netwrok:
This is a network diagram with miRNA (purple circle) as the center.
We used three tools(PITA, miRanda, targetScan) to predict the binding sites of circrna (green circle) and miRNA. Accordingly, for this miRNA that binds to circrna, we have three confidence levels, namely confident 1, confident 2 and confident 3. Confidence value indicates how many tools can deduce these results. For each confidence, we use different kinds of dashed lines.

Target circRNA with confidence

Confidence 3 (3 of 3 tools predicted)

CircID miRNA PITA miRanda targetScan
chr9:97170607|97194840 hsa-miR-3171 1 1 1
chr17:59655854|59664909 hsa-miR-3171 1 1 1

Confidence 1 (1 of 3 tools predicted)

CircID miRNA PITA miRanda targetScan
chr12:113390830|113391000 hsa-miR-3171 1 0 0
chr17:44206428|44206545 hsa-miR-3171 1 0 0
chr17:39715290|39715504 hsa-miR-3171 0 1 0
chr6:39902507|39902859 hsa-miR-3171 0 1 0
chr5:177467789|177468217 hsa-miR-3171 0 1 0
chr5:151662084|151662171 hsa-miR-3171 0 1 0
chr12:113390830|113391068 hsa-miR-3171 1 0 0
chr6:30328482|30328613 hsa-miR-3171 1 0 0
chr2:241990467|241990657 hsa-miR-3171 1 0 0
chr9:134159561|134159704 hsa-miR-3171 0 1 0
chr8:42417739|42417967 hsa-miR-3171 0 1 0
chr9:134159561|134159678 hsa-miR-3171 0 1 0
chr13:48980783|48980919 hsa-miR-3171 0 1 0
chr17:39715290|39715486 hsa-miR-3171 0 1 0
chr1:53050707|53050836 hsa-miR-3171 0 1 0
chr1:227679344|227679517 hsa-miR-3171 0 1 0
chr9:19360263|19360429 hsa-miR-3171 0 1 0
chr5:151661939|151662177 hsa-miR-3171 0 1 0
chr4:5168299|5168450 hsa-miR-3171 0 1 0
chr4:82636610|82636752 hsa-miR-3171 0 1 0
chr20:62878647~62878745 hsa-miR-3171 0 1 0
chr7:158945880|158946020 hsa-miR-3171 0 1 0
chr1:43363942~43364064 hsa-miR-3171 0 1 0
chrX:81294466~81294570 hsa-miR-3171 0 1 0
chr11:27366694~27366839 hsa-miR-3171 0 1 0
chr16:2830634~2830777 hsa-miR-3171 0 1 0
chr5:151662084~151662171 hsa-miR-3171 0 1 0
chr1:43363931~43364084 hsa-miR-3171 0 1 0
chr2:216205203~216205320 hsa-miR-3171 0 1 0
chr5:173316713|173316954 hsa-miR-3171 0 1 0
chr8:22102201~22102299 hsa-miR-3171 0 1 0
chr19:13153101~13153419 hsa-miR-3171 0 1 0
chr1:246758285~246759065 hsa-miR-3171 0 1 0
chr2:216204362~216205320 hsa-miR-3171 0 1 0
chr1:23359614~23359737 hsa-miR-3171 0 1 0
chr6:121444160~121444347 hsa-miR-3171 0 1 0
chr9:134159561~134159678 hsa-miR-3171 0 1 0
chr5:64721401|64721610 hsa-miR-3171 1 0 0
chr13:45390798|45391072 hsa-miR-3171 0 1 0
chr3:186786274|186786465 hsa-miR-3171 0 1 0
chr11:64114577|64114746 hsa-miR-3171 0 1 0
chr7:139840578|139840691 hsa-miR-3171 0 1 0
chr11:65584047|65584252 hsa-miR-3171 0 1 0
chr9:134159536|134159682 hsa-miR-3171 0 1 0
chr6:106567322|106567472 hsa-miR-3171 0 1 0
chrX:1403789|1403946 hsa-miR-3171 0 1 0
chr19:53559926|53560057 hsa-miR-3171 0 1 0
chr17:68528872|68528991 hsa-miR-3171 0 1 0
chr6:130371198|130371304 hsa-miR-3171 0 1 0
chr14:92678178|92678293 hsa-miR-3171 1 0 0
chrX:1405388|1405470 hsa-miR-3171 1 0 0
chr5:56891167|56891302 hsa-miR-3171 0 1 0
chr17:45245974|45246158 hsa-miR-3171 0 1 0
chrX:77633207|77633296 hsa-miR-3171 0 1 0
chr11:67441438|67441833 hsa-miR-3171 0 1 0
chr7:130133259|130133428 hsa-miR-3171 0 1 0
chr20:63492426|63492773 hsa-miR-3171 1 0 0
chr15:64650536|64650649 hsa-miR-3171 1 0 0
chr12:113390830|113391112 hsa-miR-3171 1 0 0
chr9:135395231|135395322 hsa-miR-3171 1 0 0
chrX:53536398|53536579 hsa-miR-3171 1 0 0
chr17:28905700|28905860 hsa-miR-3171 0 1 0
chr1:180976141|180976278 hsa-miR-3171 0 1 0
chr17:46035639|46035870 hsa-miR-3171 0 1 0
chr2:669024|669147 hsa-miR-3171 0 1 0
chr22:29057180|29057300 hsa-miR-3171 0 1 0
chrX:54465696|54465818 hsa-miR-3171 0 1 0
chr15:78500399|78500497 hsa-miR-3171 0 1 0
chr7:37951111|37951251 hsa-miR-3171 0 1 0
chr3:11750769|11751020 hsa-miR-3171 0 1 0
chr2:201380802|201380992 hsa-miR-3171 0 1 0
chr5:134285260|134285470 hsa-miR-3171 0 1 0
chr1:53050688|53050836 hsa-miR-3171 0 1 0
chr12:68765279|68765522 hsa-miR-3171 0 1 0
chr8:38262093|38262251 hsa-miR-3171 0 1 0
chr12:14500491|14500642 hsa-miR-3171 0 1 0
chr8:142772540|142772743 hsa-miR-3171 0 1 0
chr1:37560473|37560688 hsa-miR-3171 0 1 0
chr11:119100676|119100827 hsa-miR-3171 0 1 0
chr11:111296887|111297023 hsa-miR-3171 0 1 0
chr7:37951000|37951251 hsa-miR-3171 0 1 0
chr1:197583152|197617759 hsa-miR-3171 0 1 0
chr11:47415447|47415535 hsa-miR-3171 0 1 0
chr13:95489535|95489686 hsa-miR-3171 0 1 0
chr9:35698077|35698358 hsa-miR-3171 0 1 0
chr1:205610773|205610990 hsa-miR-3171 0 1 0
chr6:137881269|137881480 hsa-miR-3171 0 1 0
chr2:188996125|188996461 hsa-miR-3171 0 1 0
chr5:34657718|34658030 hsa-miR-3171 0 1 0
chr8:94705880|94706069 hsa-miR-3171 0 1 0
chr14:74901130|74901233 hsa-miR-3171 0 1 0
chr1:209616145|209616317 hsa-miR-3171 0 1 0
chr7:37951044|37951251 hsa-miR-3171 0 1 0
chr1:23359639|23359737 hsa-miR-3171 0 1 0
chr7:21902027|21902151 hsa-miR-3171 0 1 0
chr7:95374857|95375013 hsa-miR-3171 0 1 0
chr11:68613458|68613602 hsa-miR-3171 0 1 0
chr5:38823320|38823414 hsa-miR-3171 0 1 0
chr17:44206430|44206545 hsa-miR-3171 1 0 0
chr17:44206456|44206624 hsa-miR-3171 1 0 0
chr8:11837812|11837910 hsa-miR-3171 1 0 0
chr12:113390913|113391112 hsa-miR-3171 1 0 0
chr9:130702010|130702230 hsa-miR-3171 0 1 0
chr1:115691329|115691484 hsa-miR-3171 0 1 0
chr2:188996125|188996463 hsa-miR-3171 0 1 0
chr6:31781561|31781895 hsa-miR-3171 0 1 0
chrX:120626170|120626397 hsa-miR-3171 0 1 0
chr9:127088515|127088636 hsa-miR-3171 0 1 0
chr8:124543097|124543236 hsa-miR-3171 0 1 0
chr2:66435849|66437816 hsa-miR-3171 0 1 0
chr9:134159561|134159849 hsa-miR-3171 0 1 0
chr10:87727150|87727323 hsa-miR-3171 0 1 0
chr19:4047575|4047688 hsa-miR-3171 0 1 0
chr2:216204362|216205320 hsa-miR-3171 0 1 0
chr18:54155050|54155194 hsa-miR-3171 0 1 0
chr6:142189436|142189510 hsa-miR-3171 0 1 0
chr3:136152158|136152457 hsa-miR-3171 0 1 0
chr11:27366694|27366839 hsa-miR-3171 0 1 0
chr2:65088561|65088958 hsa-miR-3171 0 1 0
chr8:74236550|74236755 hsa-miR-3171 0 1 0
chr16:28834076|28834364 hsa-miR-3171 0 1 0
chr3:122535560|122535684 hsa-miR-3171 0 1 0
chr2:3472206|3472435 hsa-miR-3171 0 1 0
chr5:173137429|173137541 hsa-miR-3171 0 1 0
chr9:35698080|35698364 hsa-miR-3171 0 1 0
chr2:240614773|240615027 hsa-miR-3171 0 1 0
chr2:127764633|127764834 hsa-miR-3171 0 1 0
chr1:53050609|53050836 hsa-miR-3171 0 1 0
chr1:155134598|155134775 hsa-miR-3171 0 1 0
chr7:158945829|158946013 hsa-miR-3171 0 1 0
chrX:53536413|53536579 hsa-miR-3171 1 0 0
chr13:100673271|100673393 hsa-miR-3171 1 0 0
chr12:53064613|53064769 hsa-miR-3171 1 0 0
chr19:53131515|53131610 hsa-miR-3171 1 0 0
chr2:237517435|237517550 hsa-miR-3171 1 0 0
chr12:113390901|113391068 hsa-miR-3171 1 0 0
Target genes
miRNA Gene Gene Description HGNC ID details
hsa-miR-3171 TFDP2 transcription factor Dp-2 HGNC:11751 details
hsa-miR-3171 RSF1 remodeling and spacing factor 1 HGNC:18118 details
hsa-miR-3171 ZHX3 zinc fingers and homeoboxes 3 HGNC:15935 details
hsa-miR-3171 COL4A5 collagen type IV alpha 5 chain HGNC:2207 details
hsa-miR-3171 ZNF641 zinc finger protein 641 HGNC:31834 details
hsa-miR-3171 SRI sorcin HGNC:11292 details
hsa-miR-3171 SFXN1 sideroflexin 1 HGNC:16085 details
hsa-miR-3171 WDR82P1 WD repeat domain 82 pseudogene 1 HGNC:32447 details
hsa-miR-3171 ARID3A AT-rich interaction domain 3A HGNC:3031 details
hsa-miR-3171 details
hsa-miR-3171 RTL8A retrotransposon Gag like 8A HGNC:24514 details
hsa-miR-3171 CMPK1 cytidine/uridine monophosphate kinase 1 HGNC:18170 details
hsa-miR-3171 JARID2 jumonji and AT-rich interaction domain containing 2 HGNC:6196 details
hsa-miR-3171 PIAS1 protein inhibitor of activated STAT 1 HGNC:2752 details
hsa-miR-3171 SPA17 sperm autoantigenic protein 17 HGNC:11210 details
hsa-miR-3171 RORA RAR related orphan receptor A HGNC:10258 details
hsa-miR-3171 ESYT2 extended synaptotagmin 2 HGNC:22211 details
hsa-miR-3171 ANKRD44 ankyrin repeat domain 44 HGNC:25259 details
hsa-miR-3171 SRSF11 serine and arginine rich splicing factor 11 HGNC:10782 details
hsa-miR-3171 PVR PVR cell adhesion molecule HGNC:9705 details
hsa-miR-3171 SUPT7L SPT7 like, STAGA complex subunit gamma HGNC:30632 details
hsa-miR-3171 MAPRE2 microtubule associated protein RP/EB family member 2 HGNC:6891 details
hsa-miR-3171 CCDC80 coiled-coil domain containing 80 HGNC:30649 details
hsa-miR-3171 SET SET nuclear proto-oncogene HGNC:10760 details
hsa-miR-3171 SYT9 synaptotagmin 9 HGNC:19265 details
hsa-miR-3171 details
hsa-miR-3171 EIF4EBP2 eukaryotic translation initiation factor 4E binding protein 2 HGNC:3289 details
hsa-miR-3171 MMP16 matrix metallopeptidase 16 HGNC:7162 details
hsa-miR-3171 CD59 CD59 molecule (CD59 blood group) HGNC:1689 details
hsa-miR-3171 POLA2 DNA polymerase alpha 2, accessory subunit HGNC:30073 details
hsa-miR-3171 ZNF431 zinc finger protein 431 HGNC:20809 details
hsa-miR-3171 ZNF544 zinc finger protein 544 HGNC:16759 details
hsa-miR-3171 PDE3A phosphodiesterase 3A HGNC:8778 details
hsa-miR-3171 CHD9 chromodomain helicase DNA binding protein 9 HGNC:25701 details
hsa-miR-3171 ATP2A2 ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 2 HGNC:812 details
hsa-miR-3171 ATP1B3 ATPase Na+/K+ transporting subunit beta 3 HGNC:806 details
hsa-miR-3171 NUDT7 nudix hydrolase 7 HGNC:8054 details
hsa-miR-3171 FRYL FRY like transcription coactivator HGNC:29127 details
hsa-miR-3171 PHF12 PHD finger protein 12 HGNC:20816 details
hsa-miR-3171 TSR1 TSR1 ribosome maturation factor HGNC:25542 details
hsa-miR-3171 CHRFAM7A CHRNA7 (exons 5-10) and FAM7A (exons A-E) fusion HGNC:15781 details
hsa-miR-3171 GLP1R glucagon like peptide 1 receptor HGNC:4324 details
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab