miRNA Card

miRNA General Information
miRNA ID hsa-miR-3935
Description Homo sapiens miR-3935 stem-loop
Comment None
Experiment Illumina [1]
Sequence UGUAGAUACGAGCACCAGCCAC
miRNA Expression in different cancers

    by mir_boxplot.py

circRNA-miRNA-gene regulatory network

Note about Netwrok:
This is a network diagram with miRNA (purple circle) as the center.
We used three tools(PITA, miRanda, targetScan) to predict the binding sites of circrna (green circle) and miRNA. Accordingly, for this miRNA that binds to circrna, we have three confidence levels, namely confident 1, confident 2 and confident 3. Confidence value indicates how many tools can deduce these results. For each confidence, we use different kinds of dashed lines.

Target circRNA with confidence

Confidence 3 (3 of 3 tools predicted)

CircID miRNA PITA miRanda targetScan

Confidence 1 (1 of 3 tools predicted)

CircID miRNA PITA miRanda targetScan
chr6:36970051|36970449 hsa-miR-3935 1 0 0
chr20:35732032|35732135 hsa-miR-3935 1 0 0
chr1:23787462|23787638 hsa-miR-3935 1 0 0
chr1:23787466|23787638 hsa-miR-3935 1 0 0
chr11:62519662|62519862 hsa-miR-3935 1 0 0
chr9:35698808|35699049 hsa-miR-3935 1 0 0
chr6:36970064|36970453 hsa-miR-3935 1 0 0
chr9:137175038|137175122 hsa-miR-3935 0 1 0
chr19:48702972|48703201 hsa-miR-3935 0 1 0
chr15:34856830|34856941 hsa-miR-3935 0 1 0
chr2:189011648|189011759 hsa-miR-3935 0 1 0
chr5:7810526|7810697 hsa-miR-3935 0 1 0
chr8:33548366|33548511 hsa-miR-3935 0 1 0
chr2:182779155|182779320 hsa-miR-3935 1 0 0
chr1:151342151|151342290 hsa-miR-3935 1 0 0
chr22:20115672|20116057 hsa-miR-3935 1 0 0
chr9:35698808|35698933 hsa-miR-3935 1 0 0
chr11:62519662|62519851 hsa-miR-3935 1 0 0
chr9:35698808|35698930 hsa-miR-3935 1 0 0
chr22:50281380|50281628 hsa-miR-3935 1 0 0
chr15:77485158|77485241 hsa-miR-3935 1 0 0
chr1:151342177|151342286 hsa-miR-3935 1 0 0
chr4:139718842|139718980 hsa-miR-3935 1 0 0
chr2:189010847|189011759 hsa-miR-3935 0 1 0
chr8:41654465|41654702 hsa-miR-3935 0 1 0
chr21:34887030|34887148 hsa-miR-3935 0 1 0
chr8:37859105|37859290 hsa-miR-3935 0 1 0
chr5:35063149|35063291 hsa-miR-3935 0 1 0
chr20:41203198|41203305 hsa-miR-3935 0 1 0
chr16:30069616|30070010 hsa-miR-3935 0 1 0
chr20:41203198|41203307 hsa-miR-3935 0 1 0
chr11:62530934|62531095 hsa-miR-3935 0 1 0
chr13:84905745|84905899 hsa-miR-3935 0 1 0
chr19:53873556|53873741 hsa-miR-3935 0 1 0
chr16:11673099|11673252 hsa-miR-3935 0 1 0
chr14:44963889|44964051 hsa-miR-3935 0 1 0
chr2:182779155~182779320 hsa-miR-3935 0 1 0
chr13:19647121~19647264 hsa-miR-3935 0 1 0
chr14:44963868|44963996 hsa-miR-3935 0 1 0
chr1:183626272~183626389 hsa-miR-3935 0 1 0
chr1:3739991~3740111 hsa-miR-3935 0 1 0
chr9:137175038~137175122 hsa-miR-3935 0 1 0
chr21:34887030~34887151 hsa-miR-3935 0 1 0
chr16:30768879~30769222 hsa-miR-3935 0 1 0
chr19:53873553~53873741 hsa-miR-3935 0 1 0
chr6:33203588~33203792 hsa-miR-3935 0 1 0
chr4:2514508|2514745 hsa-miR-3935 0 1 0
chr6:144359300|144359437 hsa-miR-3935 1 0 0
chr16:2762187|2762276 hsa-miR-3935 1 0 0
chr5:149986601|149986770 hsa-miR-3935 1 0 0
chr10:26504064|26504277 hsa-miR-3935 1 0 0
chr8:58430566|58430714 hsa-miR-3935 1 0 0
chrX:1293736|1293951 hsa-miR-3935 0 1 0
chrX:53549424|53550705 hsa-miR-3935 0 1 0
chr16:88913831|88913939 hsa-miR-3935 0 1 0
chr5:64721401|64721610 hsa-miR-3935 0 1 0
chr11:117995013|117995105 hsa-miR-3935 0 1 0
chr19:19534478|19534647 hsa-miR-3935 1 0 0
chr10:73813418|73813576 hsa-miR-3935 1 0 0
chr16:2762073|2762276 hsa-miR-3935 1 0 0
chrX:16764481|16764597 hsa-miR-3935 1 0 0
chr17:42571619|42571789 hsa-miR-3935 1 0 0
chr22:50281360|50281709 hsa-miR-3935 1 0 0
chr11:62531137|62531269 hsa-miR-3935 0 1 0
chrX:118992783|118992937 hsa-miR-3935 0 1 0
chr7:44965765|44965846 hsa-miR-3935 0 1 0
chr19:48337899|48338152 hsa-miR-3935 0 1 0
chr17:7591690|7591819 hsa-miR-3935 0 1 0
chr11:5707999|5708140 hsa-miR-3935 0 1 0
chr4:139718842|139718963 hsa-miR-3935 1 0 0
chr9:35698808|35699060 hsa-miR-3935 1 0 0
chr1:151342151|151342286 hsa-miR-3935 1 0 0
chr1:151342181|151342290 hsa-miR-3935 1 0 0
chr15:23686771|23686914 hsa-miR-3935 1 0 0
chr11:47234784|47234934 hsa-miR-3935 1 0 0
chr7:99564185|99564395 hsa-miR-3935 1 0 0
chr7:134933221|134933390 hsa-miR-3935 1 0 0
chr1:23787448|23787618 hsa-miR-3935 1 0 0
chr16:25162892|25163087 hsa-miR-3935 1 0 0
chr11:62739059|62739162 hsa-miR-3935 1 0 0
chr14:102193463|102195120 hsa-miR-3935 1 0 0
chr20:35729312|35732135 hsa-miR-3935 1 0 0
chr14:103728908|103729148 hsa-miR-3935 1 0 0
chr12:56591502|56591675 hsa-miR-3935 1 0 0
chr2:37100912|37101065 hsa-miR-3935 1 0 0
chr6:44262359|44262490 hsa-miR-3935 1 0 0
chr5:1051075|1051346 hsa-miR-3935 1 0 0
chr22:50281446|50281628 hsa-miR-3935 1 0 0
chr15:89834668|89834835 hsa-miR-3935 1 0 0
chr15:90644958|90645098 hsa-miR-3935 1 0 0
chr16:4695222|4695366 hsa-miR-3935 1 0 0
chr16:30069551|30069869 hsa-miR-3935 0 1 0
chrX:150767507|150767836 hsa-miR-3935 0 1 0
chr10:122514590|122514736 hsa-miR-3935 0 1 0
chr10:20001816|20001986 hsa-miR-3935 0 1 0
chrX:123886098|123886266 hsa-miR-3935 0 1 0
chr6:33203588|33203804 hsa-miR-3935 0 1 0
chr13:19647106|19647264 hsa-miR-3935 0 1 0
chr1:22647376|22647695 hsa-miR-3935 0 1 0
chr2:9488253|9488418 hsa-miR-3935 0 1 0
chr7:30924894|30925037 hsa-miR-3935 0 1 0
chrX:153766734|153766889 hsa-miR-3935 0 1 0
chr2:189011648|189011724 hsa-miR-3935 0 1 0
chr20:17659605|17659784 hsa-miR-3935 0 1 0
chr6:147387102|147387238 hsa-miR-3935 0 1 0
chr16:30768892|30769222 hsa-miR-3935 0 1 0
chr6:138943513|138944622 hsa-miR-3935 0 1 0
chr6:160447249|160447359 hsa-miR-3935 0 1 0
chr11:613951|614213 hsa-miR-3935 0 1 0
chr3:62291408|62291550 hsa-miR-3935 0 1 0
chr15:34856830|34857001 hsa-miR-3935 0 1 0
chr16:30768874|30768987 hsa-miR-3935 0 1 0
chr1:22647271|22647560 hsa-miR-3935 0 1 0
chr17:39557639|39557769 hsa-miR-3935 0 1 0
chr9:38627018|38627165 hsa-miR-3935 0 1 0
chrX:120259431|120259544 hsa-miR-3935 0 1 0
chr1:156802737|156802890 hsa-miR-3935 0 1 0
chr4:40424620|40424809 hsa-miR-3935 -5 1 0
chr1:22647376|22647471 hsa-miR-3935 -14 1 0
chr1:3739788|3739979 hsa-miR-3935 0 1 0
chr17:75130305|75130453 hsa-miR-3935 1 0 0
chrX:71224086|71224222 hsa-miR-3935 1 0 0
chr1:23787378|23787606 hsa-miR-3935 1 0 0
chr17:79787377|79787458 hsa-miR-3935 1 0 0
chr22:50281446|50281724 hsa-miR-3935 1 0 0
chr9:35698808|35699055 hsa-miR-3935 1 0 0
chr2:61877028|61877476 hsa-miR-3935 1 0 0
chr3:18394737|18394834 hsa-miR-3935 1 0 0
chr19:23255554|23255709 hsa-miR-3935 1 0 0
chr3:112548533|112548640 hsa-miR-3935 0 1 0
chr1:34457534|34457667 hsa-miR-3935 0 1 0
chr13:48046945|48047094 hsa-miR-3935 0 1 0
chr7:150329277|150329469 hsa-miR-3935 0 1 0
chr13:19647106|19647266 hsa-miR-3935 0 1 0
chr15:97449571|97449736 hsa-miR-3935 0 1 0
chr1:22647376|22647560 hsa-miR-3935 0 1 0
chr2:60938731|60938834 hsa-miR-3935 0 1 0
chr8:143918696|143918828 hsa-miR-3935 0 1 0
chr10:122431049|122431247 hsa-miR-3935 0 1 0
chr1:45566608|45566904 hsa-miR-3935 0 1 0
chr1:228184048|228184205 hsa-miR-3935 0 1 0
chr21:44313642|44314012 hsa-miR-3935 0 1 0
chr14:20458331|20458479 hsa-miR-3935 0 1 0
chr12:49558310|49558438 hsa-miR-3935 0 1 0
chr4:2514633|2514748 hsa-miR-3935 0 1 0
chr19:53873547|53873669 hsa-miR-3935 0 1 0
chr1:45566614|45566946 hsa-miR-3935 0 1 0
chr16:89146109|89146257 hsa-miR-3935 1 0 0
chr2:169811183|169811314 hsa-miR-3935 1 0 0
chr1:23787448|23787606 hsa-miR-3935 1 0 0
chr4:6621017|6621123 hsa-miR-3935 1 0 0
chr1:3628829|3628979 hsa-miR-3935 1 0 0
chr1:22647379|22647693 hsa-miR-3935 1 0 0
chr1:225376199|225376362 hsa-miR-3935 1 0 0
chr2:241745876|241746037 hsa-miR-3935 1 0 0
chr7:99564218|99564381 hsa-miR-3935 1 0 0
chr11:60394392|60394594 hsa-miR-3935 1 0 0
chr8:144528035|144528137 hsa-miR-3935 1 0 0
chr22:24572564|24572659 hsa-miR-3935 1 0 0
chr2:159905644|159905919 hsa-miR-3935 1 0 0
chr1:22647271|22647405 hsa-miR-3935 1 0 0
chrX:107714552|107714692 hsa-miR-3935 1 0 0
chr7:99564201|99564395 hsa-miR-3935 1 0 0
chr6:43132485|43132628 hsa-miR-3935 1 0 0
chr2:42754707|42754878 hsa-miR-3935 1 0 0
chr2:7041522|7041625 hsa-miR-3935 1 0 0
chr20:34988969|34989103 hsa-miR-3935 1 0 0
chr2:37100912|37101067 hsa-miR-3935 1 0 0
Target genes
miRNA Gene Gene Description HGNC ID details
hsa-miR-3935 TBX18 T-box transcription factor 18 HGNC:11595 details
hsa-miR-3935 DGKH diacylglycerol kinase eta HGNC:2854 details
hsa-miR-3935 details
hsa-miR-3935 SEC62 SEC62 homolog, preprotein translocation factor HGNC:11846 details
hsa-miR-3935 LRRC20 leucine rich repeat containing 20 HGNC:23421 details
hsa-miR-3935 ARL5B ADP ribosylation factor like GTPase 5B HGNC:23052 details
hsa-miR-3935 IGF1R insulin like growth factor 1 receptor HGNC:5465 details
hsa-miR-3935 TMED7 transmembrane p24 trafficking protein 7 HGNC:24253 details
hsa-miR-3935 MDFIC MyoD family inhibitor domain containing HGNC:28870 details
hsa-miR-3935 STRN striatin HGNC:11424 details
hsa-miR-3935 SLC10A7 solute carrier family 10 member 7 HGNC:23088 details
hsa-miR-3935 C1orf147 chromosome 1 open reading frame 147 HGNC:32061 details
hsa-miR-3935 TNRC6A trinucleotide repeat containing adaptor 6A HGNC:11969 details
hsa-miR-3935 CREBRF CREB3 regulatory factor HGNC:24050 details
hsa-miR-3935 PAFAH1B2 platelet activating factor acetylhydrolase 1b catalytic subunit 2 HGNC:8575 details
hsa-miR-3935 AKAP12 A-kinase anchoring protein 12 HGNC:370 details
hsa-miR-3935 PHEX phosphate regulating endopeptidase homolog X-linked HGNC:8918 details
hsa-miR-3935 ZNF678 zinc finger protein 678 HGNC:28652 details
hsa-miR-3935 ZNF805 zinc finger protein 805 HGNC:23272 details
hsa-miR-3935 ZNF512B zinc finger protein 512B HGNC:29212 details
hsa-miR-3935 ARPP19 cAMP regulated phosphoprotein 19 HGNC:16967 details
hsa-miR-3935 RPRD2 regulation of nuclear pre-mRNA domain containing 2 HGNC:29039 details
hsa-miR-3935 SPA17 sperm autoantigenic protein 17 HGNC:11210 details
hsa-miR-3935 NUDT21 nudix hydrolase 21 HGNC:13870 details
hsa-miR-3935 KLHL15 kelch like family member 15 HGNC:29347 details
hsa-miR-3935 ERH ERH mRNA splicing and mitosis factor HGNC:3447 details
hsa-miR-3935 details
hsa-miR-3935 NXPE3 neurexophilin and PC-esterase domain family member 3 HGNC:28238 details
hsa-miR-3935 IGF2BP1 insulin like growth factor 2 mRNA binding protein 1 HGNC:28866 details
hsa-miR-3935 TVP23C trans-golgi network vesicle protein 23 homolog C HGNC:30453 details
hsa-miR-3935 PGRMC1 progesterone receptor membrane component 1 HGNC:16090 details
hsa-miR-3935 PCDH11Y protocadherin 11 Y-linked HGNC:15813 details
hsa-miR-3935 MAPK6 mitogen-activated protein kinase 6 HGNC:6879 details
hsa-miR-3935 FGF2 fibroblast growth factor 2 HGNC:3676 details
hsa-miR-3935 BLOC1S6 biogenesis of lysosomal organelles complex 1 subunit 6 HGNC:8549 details
hsa-miR-3935 BAG4 BAG cochaperone 4 HGNC:940 details
hsa-miR-3935 LLPH LLP homolog, long-term synaptic facilitation factor HGNC:28229 details
hsa-miR-3935 ZNF449 zinc finger protein 449 HGNC:21039 details
hsa-miR-3935 ZNF322P1 zinc finger protein 322 pseudogene 1 HGNC:14003 details
hsa-miR-3935 TRIM71 tripartite motif containing 71 HGNC:32669 details
hsa-miR-3935 SRSF11 serine and arginine rich splicing factor 11 HGNC:10782 details
hsa-miR-3935 RCC2 regulator of chromosome condensation 2 HGNC:30297 details
hsa-miR-3935 MAP3K21 mitogen-activated protein kinase kinase kinase 21 HGNC:29798 details
hsa-miR-3935 CAPZA1 capping actin protein of muscle Z-line subunit alpha 1 HGNC:1488 details
hsa-miR-3935 BACH1 BTB domain and CNC homolog 1 HGNC:935 details
hsa-miR-3935 PCDH11X protocadherin 11 X-linked HGNC:8656 details
hsa-miR-3935 MCTS1 MCTS1 re-initiation and release factor HGNC:23357 details
hsa-miR-3935 SRSF2 serine and arginine rich splicing factor 2 HGNC:10783 details
hsa-miR-3935 RNF115 ring finger protein 115 HGNC:18154 details
hsa-miR-3935 FAM102B family with sequence similarity 102 member B HGNC:27637 details
hsa-miR-3935 DNAJB9 DnaJ heat shock protein family (Hsp40) member B9 HGNC:6968 details
hsa-miR-3935 CHD9 chromodomain helicase DNA binding protein 9 HGNC:25701 details
hsa-miR-3935 STAM signal transducing adaptor molecule HGNC:11357 details
hsa-miR-3935 NUP50 nucleoporin 50 HGNC:8065 details
hsa-miR-3935 NDUFAF3 NADH:ubiquinone oxidoreductase complex assembly factor 3 HGNC:29918 details
hsa-miR-3935 LHFPL6 LHFPL tetraspan subfamily member 6 HGNC:6586 details
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab