miRNA Card

miRNA General Information
miRNA ID hsa-miR-3942-5p
Description Homo sapiens miR-3942 stem-loop
Comment None
Experiment Illumina [1-3]
Sequence AAGCAAUACUGUUACCUGAAAU
miRNA Expression in different cancers

    by mir_boxplot.py

circRNA-miRNA-gene regulatory network

Note about Netwrok:
This is a network diagram with miRNA (purple circle) as the center.
We used three tools(PITA, miRanda, targetScan) to predict the binding sites of circrna (green circle) and miRNA. Accordingly, for this miRNA that binds to circrna, we have three confidence levels, namely confident 1, confident 2 and confident 3. Confidence value indicates how many tools can deduce these results. For each confidence, we use different kinds of dashed lines.

Target circRNA with confidence

Confidence 3 (3 of 3 tools predicted)

CircID miRNA PITA miRanda targetScan

Confidence 2 (2 of 3 tools predicted)

CircID miRNA PITA miRanda targetScan
chr12:6553076|6553229 hsa-miR-3942-5p 1 1 0
chr1:205142974|205143134 hsa-miR-3942-5p 1 1 0

Confidence 1 (1 of 3 tools predicted)

CircID miRNA PITA miRanda targetScan
chr9:120601430|120601617 hsa-miR-3942-5p 0 1 0
chr16:66943888|66944048 hsa-miR-3942-5p 0 1 0
chr17:42316839|42317224 hsa-miR-3942-5p 0 1 0
chr2:69324036|69324202 hsa-miR-3942-5p 0 1 0
chr7:92454548|92454671 hsa-miR-3942-5p 0 1 0
chr3:42667009|42667126 hsa-miR-3942-5p 0 1 0
chr3:42647549|42647687 hsa-miR-3942-5p 0 1 0
chr7:92454548|92454674 hsa-miR-3942-5p 0 1 0
chr2:152117257|152117351 hsa-miR-3942-5p 0 1 0
chr11:86807884|86807999 hsa-miR-3942-5p 0 1 0
chr12:123298138|123302962 hsa-miR-3942-5p 0 1 0
chr6:127970122|127973042 hsa-miR-3942-5p 0 1 0
chr11:19934011|19934257 hsa-miR-3942-5p 0 1 0
chr19:38283627|38283797 hsa-miR-3942-5p 0 1 0
chr16:71849695|71849920 hsa-miR-3942-5p 0 1 0
chr3:185633326|185633466 hsa-miR-3942-5p 0 1 0
chr8:41934413|41934541 hsa-miR-3942-5p 0 1 0
chr8:41934413|41934499 hsa-miR-3942-5p 0 1 0
chr18:36126445|36126502 hsa-miR-3942-5p 0 1 0
chr12:22201140|22201223 hsa-miR-3942-5p 0 1 0
chr20:44753755|44753899 hsa-miR-3942-5p 0 1 0
chr8:22082356|22082522 hsa-miR-3942-5p 0 1 0
chr10:74105119|74105350 hsa-miR-3942-5p 0 1 0
chr18:9400329|9400469 hsa-miR-3942-5p 0 1 0
chr8:22082334~22082475 hsa-miR-3942-5p 0 1 0
chr11:62671971~62672121 hsa-miR-3942-5p 0 1 0
chr10:106574150~106574293 hsa-miR-3942-5p 0 1 0
chr11:86807807~86807968 hsa-miR-3942-5p 0 1 0
chr17:18277981~18278144 hsa-miR-3942-5p 0 1 0
chr14:81178139~81178261 hsa-miR-3942-5p 0 1 0
chr16:2096123~2096274 hsa-miR-3942-5p 0 1 0
chr2:112339594~112339679 hsa-miR-3942-5p 0 1 0
chr6:2854558~2854758 hsa-miR-3942-5p 0 1 0
chr9:14082191~14082407 hsa-miR-3942-5p 0 1 0
chr12:51354151~51354375 hsa-miR-3942-5p 0 1 0
chr14:24574488|24575334 hsa-miR-3942-5p 0 1 0
chr7:100353861|100354012 hsa-miR-3942-5p 0 1 0
chr16:10930157|10930450 hsa-miR-3942-5p 0 1 0
chr9:34651630|34651750 hsa-miR-3942-5p 0 1 0
chr2:112339594|112339679 hsa-miR-3942-5p 0 1 0
chr10:79615115|79615356 hsa-miR-3942-5p 0 1 0
chr10:79615205|79615352 hsa-miR-3942-5p 0 1 0
chr10:79615146|79615362 hsa-miR-3942-5p 0 1 0
chr10:79615091|79615284 hsa-miR-3942-5p 0 1 0
chr10:79615184|79615362 hsa-miR-3942-5p 0 1 0
chr10:79615100|79615278 hsa-miR-3942-5p 0 1 0
chr10:79615190|79615362 hsa-miR-3942-5p 0 1 0
chr2:69324036|69324206 hsa-miR-3942-5p 0 1 0
chr7:92454514|92454671 hsa-miR-3942-5p 0 1 0
chr12:110722224|110722558 hsa-miR-3942-5p 0 1 0
chr10:79615146|79615278 hsa-miR-3942-5p 0 1 0
chr8:41934413|41934523 hsa-miR-3942-5p 0 1 0
chr10:79615139|79615284 hsa-miR-3942-5p 0 1 0
chr10:79556029|79556181 hsa-miR-3942-5p 0 1 0
chr10:79615235|79615362 hsa-miR-3942-5p 0 1 0
chr10:79555955|79556181 hsa-miR-3942-5p 0 1 0
chr12:46184319|46184501 hsa-miR-3942-5p 0 1 0
chr10:79615100|79615362 hsa-miR-3942-5p 0 1 0
chr11:86807857|86807965 hsa-miR-3942-5p 0 1 0
chr17:42316819|42317204 hsa-miR-3942-5p 0 1 0
chr10:79615144|79615352 hsa-miR-3942-5p 0 1 0
chr3:42647546|42647687 hsa-miR-3942-5p 0 1 0
chr10:79615127|79615278 hsa-miR-3942-5p 0 1 0
chr1:9266399|9266552 hsa-miR-3942-5p 0 1 0
chr10:79615205|79615362 hsa-miR-3942-5p 0 1 0
chr7:12224226|12229819 hsa-miR-3942-5p 0 1 0
chr10:79615146|79615284 hsa-miR-3942-5p 0 1 0
chr10:73733815|73733928 hsa-miR-3942-5p 0 1 0
chr10:79615166|79615362 hsa-miR-3942-5p 0 1 0
chr11:86807794|86807965 hsa-miR-3942-5p 0 1 0
chr4:86990464|86990613 hsa-miR-3942-5p 0 1 0
chr10:79556029|79556149 hsa-miR-3942-5p 0 1 0
chr11:18346989|18347112 hsa-miR-3942-5p 0 1 0
chr1:111187384|111187581 hsa-miR-3942-5p 0 1 0
chr10:79615233|79615362 hsa-miR-3942-5p 0 1 0
chr12:55914421|55914580 hsa-miR-3942-5p 0 1 0
chr10:79556029|79556184 hsa-miR-3942-5p 0 1 0
chr10:79615235|79615352 hsa-miR-3942-5p 0 1 0
chr10:79615146|79615352 hsa-miR-3942-5p 0 1 0
chr10:79615144|79615278 hsa-miR-3942-5p 0 1 0
chr10:79556023|79556164 hsa-miR-3942-5p 0 1 0
chr11:62671971|62672121 hsa-miR-3942-5p 0 1 0
chr3:42647624|42647772 hsa-miR-3942-5p 0 1 0
chr2:190252284|190261234 hsa-miR-3942-5p 0 1 0
chr2:241495231|241495527 hsa-miR-3942-5p -10 1 0
chr11:95169058|95169250 hsa-miR-3942-5p -8 1 0
chr10:100363828|100363940 hsa-miR-3942-5p 1 0 0
chr16:66943855|66944048 hsa-miR-3942-5p 0 1 0
chr2:152117205|152117326 hsa-miR-3942-5p 0 1 0
chr1:9266375|9266552 hsa-miR-3942-5p 0 1 0
chr3:14945461|14945601 hsa-miR-3942-5p 0 1 0
chr6:127970098|127970280 hsa-miR-3942-5p 0 1 0
chr8:41934388|41934499 hsa-miR-3942-5p 0 1 0
chr7:100353734|100353984 hsa-miR-3942-5p 0 1 0
chr16:66943888|66944052 hsa-miR-3942-5p 0 1 0
chr19:41674093|41674209 hsa-miR-3942-5p 0 1 0
chr19:41674093|41674352 hsa-miR-3942-5p 0 1 0
chr16:66943885|66944048 hsa-miR-3942-5p 0 1 0
chr16:66943855|66944070 hsa-miR-3942-5p 0 1 0
chr2:8730094|8730336 hsa-miR-3942-5p 0 1 0
chr5:138187147|138187287 hsa-miR-3942-5p 0 1 0
chr12:64633687|64633797 hsa-miR-3942-5p 0 1 0
Target genes
miRNA Gene Gene Description HGNC ID details
hsa-miR-3942-5p ITM2A integral membrane protein 2A HGNC:6173 details
hsa-miR-3942-5p ATP6V0B ATPase H+ transporting V0 subunit b HGNC:861 details
hsa-miR-3942-5p RBM12 RNA binding motif protein 12 HGNC:9898 details
hsa-miR-3942-5p TRIP4 thyroid hormone receptor interactor 4 HGNC:12310 details
hsa-miR-3942-5p SHOC2 SHOC2 leucine rich repeat scaffold protein HGNC:15454 details
hsa-miR-3942-5p RGMB repulsive guidance molecule BMP co-receptor b HGNC:26896 details
hsa-miR-3942-5p RAB14 RAB14, member RAS oncogene family HGNC:16524 details
hsa-miR-3942-5p FIGN fidgetin, microtubule severing factor HGNC:13285 details
hsa-miR-3942-5p EOGT EGF domain specific O-linked N-acetylglucosamine transferase HGNC:28526 details
hsa-miR-3942-5p C5orf24 chromosome 5 open reading frame 24 HGNC:26746 details
hsa-miR-3942-5p ARL6IP1 ADP ribosylation factor like GTPase 6 interacting protein 1 HGNC:697 details
hsa-miR-3942-5p CPEB2 cytoplasmic polyadenylation element binding protein 2 HGNC:21745 details
hsa-miR-3942-5p RBBP6 RB binding protein 6, ubiquitin ligase HGNC:9889 details
hsa-miR-3942-5p PRICKLE2 prickle planar cell polarity protein 2 HGNC:20340 details
hsa-miR-3942-5p PFN1 profilin 1 HGNC:8881 details
hsa-miR-3942-5p FAM98A family with sequence similarity 98 member A HGNC:24520 details
hsa-miR-3942-5p E2F7 E2F transcription factor 7 HGNC:23820 details
hsa-miR-3942-5p CEP55 centrosomal protein 55 HGNC:1161 details
hsa-miR-3942-5p ATG12 autophagy related 12 HGNC:588 details
hsa-miR-3942-5p TMEM100 transmembrane protein 100 HGNC:25607 details
hsa-miR-3942-5p PRR14L proline rich 14 like HGNC:28738 details
hsa-miR-3942-5p EN2 engrailed homeobox 2 HGNC:3343 details
hsa-miR-3942-5p IER3 immediate early response 3 HGNC:5392 details
hsa-miR-3942-5p SETBP1 SET binding protein 1 HGNC:15573 details
hsa-miR-3942-5p GRPEL2 GrpE like 2, mitochondrial HGNC:21060 details
hsa-miR-3942-5p FLCN folliculin HGNC:27310 details
hsa-miR-3942-5p PER1 period circadian regulator 1 HGNC:8845 details
hsa-miR-3942-5p INTU inturned planar cell polarity protein HGNC:29239 details
hsa-miR-3942-5p IL6ST interleukin 6 cytokine family signal transducer HGNC:6021 details
hsa-miR-3942-5p TNRC6A trinucleotide repeat containing adaptor 6A HGNC:11969 details
hsa-miR-3942-5p TGIF1 TGFB induced factor homeobox 1 HGNC:11776 details
hsa-miR-3942-5p PTAR1 protein prenyltransferase alpha subunit repeat containing 1 HGNC:30449 details
hsa-miR-3942-5p AGO2 argonaute RISC catalytic component 2 HGNC:3263 details
hsa-miR-3942-5p HOXA10 homeobox A10 HGNC:5100 details
hsa-miR-3942-5p TBPL1 TATA-box binding protein like 1 HGNC:11589 details
hsa-miR-3942-5p SNX5 sorting nexin 5 HGNC:14969 details
hsa-miR-3942-5p SLC5A3 solute carrier family 5 member 3 HGNC:11038 details
hsa-miR-3942-5p NUMB NUMB endocytic adaptor protein HGNC:8060 details
hsa-miR-3942-5p MPRIP myosin phosphatase Rho interacting protein HGNC:30321 details
hsa-miR-3942-5p LCLAT1 lysocardiolipin acyltransferase 1 HGNC:26756 details
hsa-miR-3942-5p EPM2AIP1 EPM2A interacting protein 1 HGNC:19735 details
hsa-miR-3942-5p YAF2 YY1 associated factor 2 HGNC:17363 details
hsa-miR-3942-5p VKORC1L1 vitamin K epoxide reductase complex subunit 1 like 1 HGNC:21492 details
hsa-miR-3942-5p UBE2B ubiquitin conjugating enzyme E2 B HGNC:12473 details
hsa-miR-3942-5p SLBP stem-loop binding protein HGNC:10904 details
hsa-miR-3942-5p SETD5 SET domain containing 5 HGNC:25566 details
hsa-miR-3942-5p SCD stearoyl-CoA desaturase HGNC:10571 details
hsa-miR-3942-5p PDZD8 PDZ domain containing 8 HGNC:26974 details
hsa-miR-3942-5p CYP26B1 cytochrome P450 family 26 subfamily B member 1 HGNC:20581 details
hsa-miR-3942-5p CNKSR3 CNKSR family member 3 HGNC:23034 details
hsa-miR-3942-5p COMMD3-BMI1 COMMD3-BMI1 readthrough HGNC:48326 details
hsa-miR-3942-5p BMI1 BMI1 proto-oncogene, polycomb ring finger HGNC:1066 details
hsa-miR-3942-5p DEPDC1B DEP domain containing 1B HGNC:24902 details
hsa-miR-3942-5p SNX18 sorting nexin 18 HGNC:19245 details
hsa-miR-3942-5p SNTB2 syntrophin beta 2 HGNC:11169 details
hsa-miR-3942-5p SDCBP syndecan binding protein HGNC:10662 details
hsa-miR-3942-5p FOXJ3 forkhead box J3 HGNC:29178 details
hsa-miR-3942-5p RPL7L1 ribosomal protein L7 like 1 HGNC:21370 details
hsa-miR-3942-5p SERBP1 SERPINE1 mRNA binding protein 1 HGNC:17860 details
hsa-miR-3942-5p BAG4 BAG cochaperone 4 HGNC:940 details
hsa-miR-3942-5p VSNL1 visinin like 1 HGNC:12722 details
hsa-miR-3942-5p KCNIP3 potassium voltage-gated channel interacting protein 3 HGNC:15523 details
hsa-miR-3942-5p details
hsa-miR-3942-5p ACSBG1 acyl-CoA synthetase bubblegum family member 1 HGNC:29567 details
hsa-miR-3942-5p GAN gigaxonin HGNC:4137 details
hsa-miR-3942-5p ABLIM1 actin binding LIM protein 1 HGNC:78 details
hsa-miR-3942-5p ESD esterase D HGNC:3465 details
hsa-miR-3942-5p RBBP4 RB binding protein 4, chromatin remodeling factor HGNC:9887 details
hsa-miR-3942-5p NRIP1 nuclear receptor interacting protein 1 HGNC:8001 details
hsa-miR-3942-5p MGLL monoglyceride lipase HGNC:17038 details
hsa-miR-3942-5p BAHD1 bromo adjacent homology domain containing 1 HGNC:29153 details
hsa-miR-3942-5p ACBD5 acyl-CoA binding domain containing 5 HGNC:23338 details
hsa-miR-3942-5p C22orf39 chromosome 22 open reading frame 39 HGNC:27012 details
hsa-miR-3942-5p SBNO1 strawberry notch homolog 1 HGNC:22973 details
hsa-miR-3942-5p SESN1 sestrin 1 HGNC:21595 details
hsa-miR-3942-5p ATP6V1E1 ATPase H+ transporting V1 subunit E1 HGNC:857 details
hsa-miR-3942-5p FDX1 ferredoxin 1 HGNC:3638 details
hsa-miR-3942-5p RHNO1 RAD9-HUS1-RAD1 interacting nuclear orphan 1 HGNC:28206 details
hsa-miR-3942-5p ACTC1 actin alpha cardiac muscle 1 HGNC:143 details
hsa-miR-3942-5p ETV3 ETS variant transcription factor 3 HGNC:3492 details
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab