miRNA Card

miRNA General Information
miRNA ID hsa-miR-4272
Description Homo sapiens miR-4272 stem-loop
Comment None
Experiment SOLiD [1]
Sequence CAUUCAACUAGUGAUUGU
miRNA Expression in different cancers

    by mir_boxplot.py

circRNA-miRNA-gene regulatory network

Note about Netwrok:
This is a network diagram with miRNA (purple circle) as the center.
We used three tools(PITA, miRanda, targetScan) to predict the binding sites of circrna (green circle) and miRNA. Accordingly, for this miRNA that binds to circrna, we have three confidence levels, namely confident 1, confident 2 and confident 3. Confidence value indicates how many tools can deduce these results. For each confidence, we use different kinds of dashed lines.

Target circRNA with confidence

Confidence 3 (3 of 3 tools predicted)

CircID miRNA PITA miRanda targetScan

Confidence 2 (2 of 3 tools predicted)

CircID miRNA PITA miRanda targetScan
Target genes
miRNA Gene Gene Description HGNC ID details
hsa-miR-4272 CCNT2 cyclin T2 HGNC:1600 details
hsa-miR-4272 TMEM37 transmembrane protein 37 HGNC:18216 details
hsa-miR-4272 ZNF609 zinc finger protein 609 HGNC:29003 details
hsa-miR-4272 VMP1 vacuole membrane protein 1 HGNC:29559 details
hsa-miR-4272 TNRC6A trinucleotide repeat containing adaptor 6A HGNC:11969 details
hsa-miR-4272 PTEN phosphatase and tensin homolog HGNC:9588 details
hsa-miR-4272 PPP2R5E protein phosphatase 2 regulatory subunit B'epsilon HGNC:9313 details
hsa-miR-4272 PDIA6 protein disulfide isomerase family A member 6 HGNC:30168 details
hsa-miR-4272 OTUD4 OTU deubiquitinase 4 HGNC:24949 details
hsa-miR-4272 DAB2 DAB adaptor protein 2 HGNC:2662 details
hsa-miR-4272 IL6ST interleukin 6 cytokine family signal transducer HGNC:6021 details
hsa-miR-4272 MDM2 MDM2 proto-oncogene HGNC:6973 details
hsa-miR-4272 TET3 tet methylcytosine dioxygenase 3 HGNC:28313 details
hsa-miR-4272 INTU inturned planar cell polarity protein HGNC:29239 details
hsa-miR-4272 MFSD8 major facilitator superfamily domain containing 8 HGNC:28486 details
hsa-miR-4272 SFT2D2 SFT2 domain containing 2 HGNC:25140 details
hsa-miR-4272 PLEKHA1 pleckstrin homology domain containing A1 HGNC:14335 details
hsa-miR-4272 details
hsa-miR-4272 CBWD1 COBW domain containing 1 HGNC:17134 details
hsa-miR-4272 CBWD5 COBW domain containing 5 HGNC:24584 details
hsa-miR-4272 YAF2 YY1 associated factor 2 HGNC:17363 details
hsa-miR-4272 HSP90B1 heat shock protein 90 beta family member 1 HGNC:12028 details
hsa-miR-4272 FSIP2 fibrous sheath interacting protein 2 HGNC:21675 details
hsa-miR-4272 GJB7 gap junction protein beta 7 HGNC:16690 details
hsa-miR-4272 ALAD aminolevulinate dehydratase HGNC:395 details
hsa-miR-4272 SYT4 synaptotagmin 4 HGNC:11512 details
hsa-miR-4272 XIAP X-linked inhibitor of apoptosis HGNC:592 details
hsa-miR-4272 SOWAHC sosondowah ankyrin repeat domain family member C HGNC:26149 details
hsa-miR-4272 RBFOX2 RNA binding fox-1 homolog 2 HGNC:9906 details
hsa-miR-4272 PHOX2B paired like homeobox 2B HGNC:9143 details
hsa-miR-4272 LRIG3 leucine rich repeats and immunoglobulin like domains 3 HGNC:30991 details
hsa-miR-4272 FKBP5 FKBP prolyl isomerase 5 HGNC:3721 details
hsa-miR-4272 DDX6 DEAD-box helicase 6 HGNC:2747 details
hsa-miR-4272 AGPAT5 1-acylglycerol-3-phosphate O-acyltransferase 5 HGNC:20886 details
hsa-miR-4272 DDX3X DEAD-box helicase 3 X-linked HGNC:2745 details
hsa-miR-4272 NR6A1 nuclear receptor subfamily 6 group A member 1 HGNC:7985 details
hsa-miR-4272 ZNF608 zinc finger protein 608 HGNC:29238 details
hsa-miR-4272 TPRG1L tumor protein p63 regulated 1 like HGNC:27007 details
hsa-miR-4272 NDUFB5 NADH:ubiquinone oxidoreductase subunit B5 HGNC:7700 details
hsa-miR-4272 PVR PVR cell adhesion molecule HGNC:9705 details
hsa-miR-4272 ATG2B autophagy related 2B HGNC:20187 details
hsa-miR-4272 YTHDC1 YTH domain containing 1 HGNC:30626 details
hsa-miR-4272 UBR3 ubiquitin protein ligase E3 component n-recognin 3 HGNC:30467 details
hsa-miR-4272 RRS1 ribosome biogenesis regulator 1 homolog HGNC:17083 details
hsa-miR-4272 PRICKLE2 prickle planar cell polarity protein 2 HGNC:20340 details
hsa-miR-4272 PDZD8 PDZ domain containing 8 HGNC:26974 details
hsa-miR-4272 EPC2 enhancer of polycomb homolog 2 HGNC:24543 details
hsa-miR-4272 ELAVL2 ELAV like RNA binding protein 2 HGNC:3313 details
hsa-miR-4272 CSNK1A1 casein kinase 1 alpha 1 HGNC:2451 details
hsa-miR-4272 TMEM254 transmembrane protein 254 HGNC:25804 details
hsa-miR-4272 RAB32 RAB32, member RAS oncogene family HGNC:9772 details
hsa-miR-4272 FAM241A family with sequence similarity 241 member A HGNC:26813 details
hsa-miR-4272 ZNF28 zinc finger protein 28 HGNC:13073 details
hsa-miR-4272 details
hsa-miR-4272 ZCCHC14 zinc finger CCHC-type containing 14 HGNC:24134 details
hsa-miR-4272 YTHDF1 YTH N6-methyladenosine RNA binding protein 1 HGNC:15867 details
hsa-miR-4272 WNK1 WNK lysine deficient protein kinase 1 HGNC:14540 details
hsa-miR-4272 VIM vimentin HGNC:12692 details
hsa-miR-4272 TXNRD1 thioredoxin reductase 1 HGNC:12437 details
hsa-miR-4272 QSER1 glutamine and serine rich 1 HGNC:26154 details
hsa-miR-4272 FCHSD2 FCH and double SH3 domains 2 HGNC:29114 details
hsa-miR-4272 E2F3 E2F transcription factor 3 HGNC:3115 details
hsa-miR-4272 AAK1 AP2 associated kinase 1 HGNC:19679 details
hsa-miR-4272 FAM89A family with sequence similarity 89 member A HGNC:25057 details
hsa-miR-4272 BRI3BP BRI3 binding protein HGNC:14251 details
hsa-miR-4272 HOMER1 homer scaffold protein 1 HGNC:17512 details
hsa-miR-4272 FCF1 FCF1 rRNA-processing protein HGNC:20220 details
hsa-miR-4272 SRSF7 serine and arginine rich splicing factor 7 HGNC:10789 details
hsa-miR-4272 ZNF652 zinc finger protein 652 HGNC:29147 details
hsa-miR-4272 TNFRSF13C TNF receptor superfamily member 13C HGNC:17755 details
hsa-miR-4272 PLCL1 phospholipase C like 1 (inactive) HGNC:9063 details
hsa-miR-4272 GINS4 GINS complex subunit 4 HGNC:28226 details
hsa-miR-4272 FBXL16 F-box and leucine rich repeat protein 16 HGNC:14150 details
hsa-miR-4272 UGT3A1 UDP glycosyltransferase family 3 member A1 HGNC:26625 details
hsa-miR-4272 FOLR1 folate receptor alpha HGNC:3791 details
hsa-miR-4272 SOD2 superoxide dismutase 2 HGNC:11180 details
hsa-miR-4272 YAP1 Yes1 associated transcriptional regulator HGNC:16262 details
hsa-miR-4272 NEGR1 neuronal growth regulator 1 HGNC:17302 details
hsa-miR-4272 COL4A1 collagen type IV alpha 1 chain HGNC:2202 details
hsa-miR-4272 BECN1 beclin 1 HGNC:1034 details
hsa-miR-4272 ACBD5 acyl-CoA binding domain containing 5 HGNC:23338 details
hsa-miR-4272 RPL37 ribosomal protein L37 HGNC:10347 details
hsa-miR-4272 MYO10 myosin X HGNC:7593 details
hsa-miR-4272 CREBRF CREB3 regulatory factor HGNC:24050 details
hsa-miR-4272 HSPA8 heat shock protein family A (Hsp70) member 8 HGNC:5241 details
hsa-miR-4272 RSPO1 R-spondin 1 HGNC:21679 details
hsa-miR-4272 ADAR adenosine deaminase RNA specific HGNC:225 details
hsa-miR-4272 SPINT2 serine peptidase inhibitor, Kunitz type 2 HGNC:11247 details
hsa-miR-4272 ZNF669 zinc finger protein 669 HGNC:25736 details
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab