miRNA Card

miRNA General Information
miRNA ID hsa-miR-4536-3p
Description Homo sapiens miR-4536-1 stem-loop
Comment None
Experiment
Sequence UCGUGCAUAUAUCUACCACAU
miRNA Expression in different cancers

    by mir_boxplot.py

circRNA-miRNA-gene regulatory network

Note about Netwrok:
This is a network diagram with miRNA (purple circle) as the center.
We used three tools(PITA, miRanda, targetScan) to predict the binding sites of circrna (green circle) and miRNA. Accordingly, for this miRNA that binds to circrna, we have three confidence levels, namely confident 1, confident 2 and confident 3. Confidence value indicates how many tools can deduce these results. For each confidence, we use different kinds of dashed lines.

Target circRNA with confidence

Confidence 3 (3 of 3 tools predicted)

CircID miRNA PITA miRanda targetScan

Confidence 2 (2 of 3 tools predicted)

Confidence 1 (1 of 3 tools predicted)

CircID miRNA PITA miRanda targetScan
chr2:138571979|138572064 hsa-miR-4536-3p 0 1 0
chr4:82485272|82485508 hsa-miR-4536-3p 0 1 0
chr17:63488773|63489044 hsa-miR-4536-3p 0 1 0
chr3:183039048|183039135 hsa-miR-4536-3p 0 1 0
chr15:83094870|83095047 hsa-miR-4536-3p 0 1 0
chr15:68302277|68302387 hsa-miR-4536-3p 0 1 0
chr7:45109107|45109225 hsa-miR-4536-3p 0 1 0
chr19:40804784|40805022 hsa-miR-4536-3p 1 0 0
chr19:36149909|36150120 hsa-miR-4536-3p 1 0 0
chr11:62243352|62243458 hsa-miR-4536-3p 0 1 0
chr9:128107717|128107946 hsa-miR-4536-3p 0 1 0
chr11:64765561|64765752 hsa-miR-4536-3p 0 1 0
chr8:22689231|22689399 hsa-miR-4536-3p 0 1 0
chr6:5368596|5368691 hsa-miR-4536-3p 0 1 0
chr14:95089288|95089412 hsa-miR-4536-3p 0 1 0
chr2:97656231|97656403 hsa-miR-4536-3p 0 1 0
chr12:120446245|120446366 hsa-miR-4536-3p 0 1 0
chr6:32578819|32578997 hsa-miR-4536-3p 0 1 0
chr10:101039787~101040069 hsa-miR-4536-3p 0 1 0
chr7:6054556~6054678 hsa-miR-4536-3p 0 1 0
chr6:33697623~33700465 hsa-miR-4536-3p 0 1 0
chr15:51499325|51499512 hsa-miR-4536-3p 1 0 0
chr17:76011772|76012077 hsa-miR-4536-3p 1 0 0
chr2:207538276|207538376 hsa-miR-4536-3p 0 1 0
chr1:44412031|44412290 hsa-miR-4536-3p 0 1 0
chr1:52684516|52684710 hsa-miR-4536-3p 0 1 0
chr12:62422441|62422532 hsa-miR-4536-3p 0 1 0
chr17:63488689|63489002 hsa-miR-4536-3p 0 1 0
chr19:14441593|14441760 hsa-miR-4536-3p 0 1 0
chr19:29942304|29942447 hsa-miR-4536-3p 0 1 0
chrX:48689360|48691220 hsa-miR-4536-3p 0 1 0
chr21:44311308|44311489 hsa-miR-4536-3p 0 1 0
chr11:118898042|118898183 hsa-miR-4536-3p 0 1 0
chrX:111620121|111620224 hsa-miR-4536-3p 0 1 0
chr6:5368591|5368789 hsa-miR-4536-3p 0 1 0
chr1:87348695|87348820 hsa-miR-4536-3p 0 1 0
chr7:1549147|1549310 hsa-miR-4536-3p 0 1 0
chr16:4507933|4508015 hsa-miR-4536-3p 0 1 0
chr5:69509161|69509365 hsa-miR-4536-3p 0 1 0
chr16:4507842|4508015 hsa-miR-4536-3p 0 1 0
chr3:114085705|114085870 hsa-miR-4536-3p 0 1 0
chr12:10127564|10127729 hsa-miR-4536-3p 0 1 0
chr4:99865685|99865836 hsa-miR-4536-3p 0 1 0
chr6:33697598|33697736 hsa-miR-4536-3p 0 1 0
chr9:87965735|87965865 hsa-miR-4536-3p 0 1 0
chr7:6054556|6054678 hsa-miR-4536-3p 0 1 0
chr16:4507887|4508204 hsa-miR-4536-3p 0 1 0
chr6:32578819|32578986 hsa-miR-4536-3p 0 1 0
chr11:118898042|118898146 hsa-miR-4536-3p 0 1 0
chr13:112885383|112885570 hsa-miR-4536-3p -6 1 0
chr12:110344064|110344305 hsa-miR-4536-3p -11 1 0
chr22:40323858|40324106 hsa-miR-4536-3p -2 1 0
chr11:62887080|62887390 hsa-miR-4536-3p 1 0 0
chr3:47008161|47008364 hsa-miR-4536-3p 0 1 0
chr9:128721738|128722063 hsa-miR-4536-3p 0 1 0
chr9:128107762|128107946 hsa-miR-4536-3p 0 1 0
chr10:58397686|58397792 hsa-miR-4536-3p 0 1 0
chr2:97656253|97656418 hsa-miR-4536-3p 0 1 0
chrX:71134796|71135179 hsa-miR-4536-3p 0 1 0
chr11:8948324|8948448 hsa-miR-4536-3p 0 1 0
chr19:36149853|36150120 hsa-miR-4536-3p 1 0 0
chr5:179833783|179833913 hsa-miR-4536-3p 1 0 0
chr10:69194160|69194356 hsa-miR-4536-3p 1 0 0
Target genes
miRNA Gene Gene Description HGNC ID details
hsa-miR-4536-3p EFHD2 EF-hand domain family member D2 HGNC:28670 details
hsa-miR-4536-3p PFKP phosphofructokinase, platelet HGNC:8878 details
hsa-miR-4536-3p details
hsa-miR-4536-3p USP1 ubiquitin specific peptidase 1 HGNC:12607 details
hsa-miR-4536-3p DBN1 drebrin 1 HGNC:2695 details
hsa-miR-4536-3p NSUN3 NOP2/Sun RNA methyltransferase 3 HGNC:26208 details
hsa-miR-4536-3p STX1B syntaxin 1B HGNC:18539 details
hsa-miR-4536-3p NACC2 NACC family member 2 HGNC:23846 details
hsa-miR-4536-3p THAP2 THAP domain containing 2 HGNC:20854 details
hsa-miR-4536-3p ZNF431 zinc finger protein 431 HGNC:20809 details
hsa-miR-4536-3p HNRNPU heterogeneous nuclear ribonucleoprotein U HGNC:5048 details
hsa-miR-4536-3p details
hsa-miR-4536-3p ISY1 ISY1 splicing factor homolog HGNC:29201 details
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab