miRNA Card

miRNA General Information
miRNA ID hsa-miR-4680-3p
Description Homo sapiens miR-4680 stem-loop
Comment None
Experiment Illumina [1]
Sequence UCUGAAUUGUAAGAGUUGUUA
miRNA Expression in different cancers

    by mir_boxplot.py

circRNA-miRNA-gene regulatory network

Note about Netwrok:
This is a network diagram with miRNA (purple circle) as the center.
We used three tools(PITA, miRanda, targetScan) to predict the binding sites of circrna (green circle) and miRNA. Accordingly, for this miRNA that binds to circrna, we have three confidence levels, namely confident 1, confident 2 and confident 3. Confidence value indicates how many tools can deduce these results. For each confidence, we use different kinds of dashed lines.

Target circRNA with confidence

Confidence 3 (3 of 3 tools predicted)

CircID miRNA PITA miRanda targetScan

Confidence 2 (2 of 3 tools predicted)

CircID miRNA PITA miRanda targetScan

Confidence 1 (1 of 3 tools predicted)

CircID miRNA PITA miRanda targetScan
chr10:5457917|5458098 hsa-miR-4680-3p 1 0 0
chr1:52417439|52417562 hsa-miR-4680-3p 0 1 0
chr19:19202791|19203154 hsa-miR-4680-3p 0 1 0
chr6:31659740|31659856 hsa-miR-4680-3p 0 1 0
chr3:149027236|149027396 hsa-miR-4680-3p 0 1 0
chr12:13215225|13215366 hsa-miR-4680-3p 0 1 0
chr1:52417390|52417565 hsa-miR-4680-3p 0 1 0
chr12:896380|896553 hsa-miR-4680-3p 0 1 0
chr22:38483753|38483906 hsa-miR-4680-3p 0 1 0
chr17:40406584|40406689 hsa-miR-4680-3p 0 1 0
chr12:115991334|115991632 hsa-miR-4680-3p 0 1 0
chr3:37323940|37324118 hsa-miR-4680-3p 0 1 0
chr4:57008791|57008905 hsa-miR-4680-3p 0 1 0
chr9:124879999|124880160 hsa-miR-4680-3p 0 1 0
chr1:215621406|215621612 hsa-miR-4680-3p 0 1 0
chr14:20456708|20457042 hsa-miR-4680-3p 0 1 0
chr17:40406584|40406917 hsa-miR-4680-3p 0 1 0
chr10:110898054|110898193 hsa-miR-4680-3p 1 0 0
chr12:112972809|112972907 hsa-miR-4680-3p 0 1 0
chr15:39596231|39596464 hsa-miR-4680-3p 0 1 0
chr2:210021069|210021263 hsa-miR-4680-3p 0 1 0
chr20:42096050|42096189 hsa-miR-4680-3p 0 1 0
chrX:136874432|136874562 hsa-miR-4680-3p 0 1 0
chr14:20456708|20457019 hsa-miR-4680-3p 0 1 0
chr9:32543127|32543257 hsa-miR-4680-3p 0 1 0
chr2:20033130|20033265 hsa-miR-4680-3p 0 1 0
chr14:24418520|24418725 hsa-miR-4680-3p 0 1 0
chr2:20033130|20033216 hsa-miR-4680-3p 0 1 0
chr12:112972768|112972909 hsa-miR-4680-3p 0 1 0
chr10:6115270|6115531 hsa-miR-4680-3p 0 1 0
chr9:69254421|69254552 hsa-miR-4680-3p 0 1 0
chr16:30443800|30444052 hsa-miR-4680-3p 0 1 0
chr21:34517234|34517370 hsa-miR-4680-3p 0 1 0
chr11:68756157|68756325 hsa-miR-4680-3p 0 1 0
chr3:113719521|113719629 hsa-miR-4680-3p 0 1 0
chr22:49903672|49903809 hsa-miR-4680-3p 0 1 0
chr12:116230533|116237705 hsa-miR-4680-3p 0 1 0
chr7:66377877|66377971 hsa-miR-4680-3p 0 1 0
chr12:29501172|29501331 hsa-miR-4680-3p 0 1 0
chr2:20033039|20033212 hsa-miR-4680-3p 0 1 0
chr10:110898054~110898193 hsa-miR-4680-3p 0 1 0
chr7:131501718~131501849 hsa-miR-4680-3p 0 1 0
chr14:20456710~20457019 hsa-miR-4680-3p 0 1 0
chr6:30655238~30655461 hsa-miR-4680-3p 0 1 0
chrX:23730527~23730859 hsa-miR-4680-3p 0 1 0
chr12:112972768~112972909 hsa-miR-4680-3p 0 1 0
chr14:20456668~20457019 hsa-miR-4680-3p 0 1 0
chr17:43768453~43768737 hsa-miR-4680-3p 0 1 0
chr12:13215163~13215319 hsa-miR-4680-3p 0 1 0
chr5:151681296~151681413 hsa-miR-4680-3p 0 1 0
chr15:38454205~38464169 hsa-miR-4680-3p 0 1 0
chr11:118414562|118414726 hsa-miR-4680-3p 0 1 0
chr17:58272815|58273669 hsa-miR-4680-3p 0 1 0
chr5:83474299|83474472 hsa-miR-4680-3p 0 1 0
chr8:144464508|144464906 hsa-miR-4680-3p 0 1 0
chr16:75663033|75663162 hsa-miR-4680-3p 0 1 0
chr19:8528782|8528901 hsa-miR-4680-3p 0 1 0
chr6:33456938|33457092 hsa-miR-4680-3p 0 1 0
chr5:68237795|68237946 hsa-miR-4680-3p 0 1 0
chr8:116847142|116847280 hsa-miR-4680-3p 0 1 0
chr17:58272815|58272918 hsa-miR-4680-3p 0 1 0
chr17:58272815|58273483 hsa-miR-4680-3p 0 1 0
chr13:50375175|50375377 hsa-miR-4680-3p 0 1 0
chr2:205994585|205994687 hsa-miR-4680-3p 0 1 0
chr9:33625117|33625268 hsa-miR-4680-3p 0 1 0
chr7:131501718|131501841 hsa-miR-4680-3p 0 1 0
chr9:69254421|69254554 hsa-miR-4680-3p 0 1 0
chr8:120396000|120396123 hsa-miR-4680-3p 0 1 0
chr5:55024363|55024755 hsa-miR-4680-3p 0 1 0
chr17:18325234|18325410 hsa-miR-4680-3p 0 1 0
chr2:85659133|85659300 hsa-miR-4680-3p 0 1 0
chr1:27371190|27371304 hsa-miR-4680-3p 0 1 0
chr8:89924790|89924936 hsa-miR-4680-3p 0 1 0
chr12:132510589|132510970 hsa-miR-4680-3p 0 1 0
chr22:38733318|38733436 hsa-miR-4680-3p 0 1 0
chr2:70296147|70296422 hsa-miR-4680-3p 0 1 0
chr3:113719521|113719625 hsa-miR-4680-3p 0 1 0
chr17:47310770|47310909 hsa-miR-4680-3p 0 1 0
chr10:50343509|50343633 hsa-miR-4680-3p 0 1 0
chr2:75694241|75696315 hsa-miR-4680-3p 0 1 0
chr11:72984088|72989097 hsa-miR-4680-3p 0 1 0
chr2:85659069|85659304 hsa-miR-4680-3p 0 1 0
chr7:92093164|92093316 hsa-miR-4680-3p 0 1 0
chr20:25301328|25301506 hsa-miR-4680-3p 0 1 0
chr1:145993860|145994118 hsa-miR-4680-3p 0 1 0
chr13:28388970|28389117 hsa-miR-4680-3p 0 1 0
chr17:43768696|43768835 hsa-miR-4680-3p 0 1 0
chr11:68756157|68756287 hsa-miR-4680-3p 0 1 0
chr14:20456710|20457019 hsa-miR-4680-3p 0 1 0
chr1:231334491|231334614 hsa-miR-4680-3p 0 1 0
chr5:132861827|132862071 hsa-miR-4680-3p 0 1 0
chr1:226141079|226141245 hsa-miR-4680-3p 0 1 0
chr11:65352525|65352686 hsa-miR-4680-3p 0 1 0
chr14:20456723|20457019 hsa-miR-4680-3p 0 1 0
chr11:61867016|61867186 hsa-miR-4680-3p 0 1 0
chr6:33456928|33457092 hsa-miR-4680-3p 0 1 0
chr10:63623003|63623335 hsa-miR-4680-3p 0 1 0
chr20:25301332|25301506 hsa-miR-4680-3p 0 1 0
chr12:64714575|64714728 hsa-miR-4680-3p -1 1 0
chr21:36753677|36753849 hsa-miR-4680-3p -10 1 0
chr14:20456710|20457042 hsa-miR-4680-3p -4 1 0
chr1:207794928|207795090 hsa-miR-4680-3p 0 1 0
chr8:37516484|37516683 hsa-miR-4680-3p 0 1 0
chr6:32979748|32979874 hsa-miR-4680-3p 0 1 0
chr2:112331402|112331580 hsa-miR-4680-3p 0 1 0
chr12:2888003|2888187 hsa-miR-4680-3p 0 1 0
chr7:151377237|151377374 hsa-miR-4680-3p 0 1 0
chr14:20456710|20456811 hsa-miR-4680-3p 0 1 0
chr14:96852837|96853166 hsa-miR-4680-3p 0 1 0
chr11:62596010|62596107 hsa-miR-4680-3p 0 1 0
chr12:112972816|112972899 hsa-miR-4680-3p 0 1 0
chr2:219499452|219499619 hsa-miR-4680-3p 0 1 0
chr4:120059869|120060047 hsa-miR-4680-3p 0 1 0
chr10:42830938|42831098 hsa-miR-4680-3p 0 1 0
chr5:150556956|150557039 hsa-miR-4680-3p 0 1 0
chr2:95148477|95148643 hsa-miR-4680-3p 0 1 0
chr20:57170861|57171021 hsa-miR-4680-3p 0 1 0
chr20:57170861|57171093 hsa-miR-4680-3p 0 1 0
chr6:1314448|1314610 hsa-miR-4680-3p 0 1 0
chr20:25007072|25007205 hsa-miR-4680-3p 0 1 0
chr21:41203536|41203708 hsa-miR-4680-3p 0 1 0
chr7:129834048|129834208 hsa-miR-4680-3p 0 1 0
chr9:69254365|69254552 hsa-miR-4680-3p 0 1 0
chr20:31665111|31665275 hsa-miR-4680-3p 0 1 0
chr1:145993855|145994077 hsa-miR-4680-3p 0 1 0
Target genes
miRNA Gene Gene Description HGNC ID details
hsa-miR-4680-3p FAM9C family with sequence similarity 9 member C HGNC:18405 details
hsa-miR-4680-3p TSC22D2 TSC22 domain family member 2 HGNC:29095 details
hsa-miR-4680-3p PEX2 peroxisomal biogenesis factor 2 HGNC:9717 details
hsa-miR-4680-3p DTWD2 DTW domain containing 2 HGNC:19334 details
hsa-miR-4680-3p WNT5A Wnt family member 5A HGNC:12784 details
hsa-miR-4680-3p LAPTM5 lysosomal protein transmembrane 5 HGNC:29612 details
hsa-miR-4680-3p SMC3 structural maintenance of chromosomes 3 HGNC:2468 details
hsa-miR-4680-3p RNF13 ring finger protein 13 HGNC:10057 details
hsa-miR-4680-3p SMYD2 SET and MYND domain containing 2 HGNC:20982 details
hsa-miR-4680-3p SETD9 SET domain containing 9 HGNC:28508 details
hsa-miR-4680-3p PRICKLE4 prickle planar cell polarity protein 4 HGNC:16805 details
hsa-miR-4680-3p KLHDC3 kelch domain containing 3 HGNC:20704 details
hsa-miR-4680-3p PLAGL2 PLAG1 like zinc finger 2 HGNC:9047 details
hsa-miR-4680-3p LPP LIM domain containing preferred translocation partner in lipoma HGNC:6679 details
hsa-miR-4680-3p N6AMT1 N-6 adenine-specific DNA methyltransferase 1 HGNC:16021 details
hsa-miR-4680-3p TBK1 TANK binding kinase 1 HGNC:11584 details
hsa-miR-4680-3p PRICKLE2 prickle planar cell polarity protein 2 HGNC:20340 details
hsa-miR-4680-3p BRD3 bromodomain containing 3 HGNC:1104 details
hsa-miR-4680-3p CYSTM1 cysteine rich transmembrane module containing 1 HGNC:30239 details
hsa-miR-4680-3p YOD1 YOD1 deubiquitinase HGNC:25035 details
hsa-miR-4680-3p TMEM100 transmembrane protein 100 HGNC:25607 details
hsa-miR-4680-3p SHOC2 SHOC2 leucine rich repeat scaffold protein HGNC:15454 details
hsa-miR-4680-3p details
hsa-miR-4680-3p PEX13 peroxisomal biogenesis factor 13 HGNC:8855 details
hsa-miR-4680-3p PDPK1 3-phosphoinositide dependent protein kinase 1 HGNC:8816 details
hsa-miR-4680-3p FOXN2 forkhead box N2 HGNC:5281 details
hsa-miR-4680-3p ATAD5 ATPase family AAA domain containing 5 HGNC:25752 details
hsa-miR-4680-3p PSD3 pleckstrin and Sec7 domain containing 3 HGNC:19093 details
hsa-miR-4680-3p DDX3X DEAD-box helicase 3 X-linked HGNC:2745 details
hsa-miR-4680-3p LSAMP limbic system associated membrane protein HGNC:6705 details
hsa-miR-4680-3p FNBP1 formin binding protein 1 HGNC:17069 details
hsa-miR-4680-3p JADE1 jade family PHD finger 1 HGNC:30027 details
hsa-miR-4680-3p FEM1C fem-1 homolog C HGNC:16933 details
hsa-miR-4680-3p CDK6 cyclin dependent kinase 6 HGNC:1777 details
hsa-miR-4680-3p SPRYD4 SPRY domain containing 4 HGNC:27468 details
hsa-miR-4680-3p GEMIN2 gem nuclear organelle associated protein 2 HGNC:10884 details
hsa-miR-4680-3p NUCKS1 nuclear casein kinase and cyclin dependent kinase substrate 1 HGNC:29923 details
hsa-miR-4680-3p HSPA13 heat shock protein family A (Hsp70) member 13 HGNC:11375 details
hsa-miR-4680-3p DYNC1LI2 dynein cytoplasmic 1 light intermediate chain 2 HGNC:2966 details
hsa-miR-4680-3p ZNF267 zinc finger protein 267 HGNC:13060 details
hsa-miR-4680-3p SMU1 SMU1 DNA replication regulator and spliceosomal factor HGNC:18247 details
hsa-miR-4680-3p E2F3 E2F transcription factor 3 HGNC:3115 details
hsa-miR-4680-3p CDCA4 cell division cycle associated 4 HGNC:14625 details
hsa-miR-4680-3p DCAF17 DDB1 and CUL4 associated factor 17 HGNC:25784 details
hsa-miR-4680-3p PAGR1 PAXIP1 associated glutamate rich protein 1 HGNC:28707 details
hsa-miR-4680-3p details
hsa-miR-4680-3p MSH6 mutS homolog 6 HGNC:7329 details
hsa-miR-4680-3p CLDN12 claudin 12 HGNC:2034 details
hsa-miR-4680-3p ERBB2 erb-b2 receptor tyrosine kinase 2 HGNC:3430 details
hsa-miR-4680-3p ZNF440 zinc finger protein 440 HGNC:20874 details
hsa-miR-4680-3p CACNG8 calcium voltage-gated channel auxiliary subunit gamma 8 HGNC:13628 details
hsa-miR-4680-3p SPATS2 spermatogenesis associated serine rich 2 HGNC:18650 details
hsa-miR-4680-3p SAMD4A sterile alpha motif domain containing 4A HGNC:23023 details
hsa-miR-4680-3p GJD3 gap junction protein delta 3 HGNC:19147 details
hsa-miR-4680-3p HID1 HID1 domain containing HGNC:15736 details
hsa-miR-4680-3p PDE4C phosphodiesterase 4C HGNC:8782 details
hsa-miR-4680-3p ENTHD1 ENTH domain containing 1 HGNC:26352 details
hsa-miR-4680-3p NEGR1 neuronal growth regulator 1 HGNC:17302 details
hsa-miR-4680-3p PLCG2 phospholipase C gamma 2 HGNC:9066 details
hsa-miR-4680-3p PHF3 PHD finger protein 3 HGNC:8921 details
hsa-miR-4680-3p FNBP1L formin binding protein 1 like HGNC:20851 details
hsa-miR-4680-3p RAB8A RAB8A, member RAS oncogene family HGNC:7007 details
hsa-miR-4680-3p TLX1 T cell leukemia homeobox 1 HGNC:5056 details
hsa-miR-4680-3p OTOG otogelin HGNC:8516 details
hsa-miR-4680-3p DHODH dihydroorotate dehydrogenase (quinone) HGNC:2867 details
hsa-miR-4680-3p UGT3A1 UDP glycosyltransferase family 3 member A1 HGNC:26625 details
hsa-miR-4680-3p ATOX1 antioxidant 1 copper chaperone HGNC:798 details
hsa-miR-4680-3p MTHFD1 methylenetetrahydrofolate dehydrogenase, cyclohydrolase and formyltetrahydrofolate synthetase 1 HGNC:7432 details
hsa-miR-4680-3p PRELID2 PRELI domain containing 2 HGNC:28306 details
hsa-miR-4680-3p RAI1 retinoic acid induced 1 HGNC:9834 details
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab