miRNA Card

miRNA General Information
miRNA ID hsa-miR-4790-3p
Description Homo sapiens miR-4790 stem-loop
Comment None
Experiment Illumina [1]
Sequence UGAAUGGUAAAGCGAUGUCACA
miRNA Expression in different cancers

    by mir_boxplot.py

circRNA-miRNA-gene regulatory network

Note about Netwrok:
This is a network diagram with miRNA (purple circle) as the center.
We used three tools(PITA, miRanda, targetScan) to predict the binding sites of circrna (green circle) and miRNA. Accordingly, for this miRNA that binds to circrna, we have three confidence levels, namely confident 1, confident 2 and confident 3. Confidence value indicates how many tools can deduce these results. For each confidence, we use different kinds of dashed lines.

Target circRNA with confidence

Confidence 3 (3 of 3 tools predicted)

CircID miRNA PITA miRanda targetScan
chr17:48162469|48189500 hsa-miR-4790-3p 1 1 1
chr4:3029201|3038513 hsa-miR-4790-3p 1 1 1

Confidence 2 (2 of 3 tools predicted)

Confidence 1 (1 of 3 tools predicted)

CircID miRNA PITA miRanda targetScan
chr17:78853743|78853854 hsa-miR-4790-3p 0 1 0
chr8:56978050|56978145 hsa-miR-4790-3p 0 1 0
chr12:54856839|54858260 hsa-miR-4790-3p 0 1 0
chr22:41256030|41256260 hsa-miR-4790-3p 0 1 0
chr9:37857886|37858118 hsa-miR-4790-3p 0 1 0
chr5:98779719|98779862 hsa-miR-4790-3p 0 1 0
chr14:102000061|102000309 hsa-miR-4790-3p 0 1 0
chr1:202891195|202891335 hsa-miR-4790-3p 0 1 0
chr11:34659498|34659728 hsa-miR-4790-3p 0 1 0
chr10:49515823|49515925 hsa-miR-4790-3p 0 1 0
chr12:91146030|91146194 hsa-miR-4790-3p 0 1 0
chr11:65320996|65321115 hsa-miR-4790-3p 0 1 0
chr20:2660719|2660940 hsa-miR-4790-3p 0 1 0
chr19:35654571|35654671 hsa-miR-4790-3p 0 1 0
chr6:43620926|43621089 hsa-miR-4790-3p 0 1 0
chr2:232681927|232682109 hsa-miR-4790-3p 1 0 0
chr1:28538592|28538723 hsa-miR-4790-3p 1 0 0
chr2:232681927|232682121 hsa-miR-4790-3p 1 0 0
chr3:195274979|195275135 hsa-miR-4790-3p 0 1 0
chr19:48639036|48639347 hsa-miR-4790-3p 0 1 0
chr17:78853748|78853879 hsa-miR-4790-3p 0 1 0
chr1:46576617|46580592 hsa-miR-4790-3p 0 1 0
chr5:35063149|35063291 hsa-miR-4790-3p 0 1 0
chrX:2904680|2904830 hsa-miR-4790-3p 0 1 0
chr9:33030446|33030601 hsa-miR-4790-3p 0 1 0
chr9:33030440|33030601 hsa-miR-4790-3p 0 1 0
chr17:75506305|75506665 hsa-miR-4790-3p 0 1 0
chr19:35654610|35658628 hsa-miR-4790-3p 0 1 0
chr2:20202424|20202538 hsa-miR-4790-3p 0 1 0
chr19:35654607|35658628 hsa-miR-4790-3p 0 1 0
chr14:70671695|70671863 hsa-miR-4790-3p 0 1 0
chr2:20202472|20202664 hsa-miR-4790-3p 0 1 0
chr6:151412911|151412997 hsa-miR-4790-3p 0 1 0
chr1:2363897|2364050 hsa-miR-4790-3p 0 1 0
chr6:33291743~33292130 hsa-miR-4790-3p 0 1 0
chr7:64685265~64685512 hsa-miR-4790-3p 0 1 0
chr10:73765834~73766107 hsa-miR-4790-3p 0 1 0
chr8:56978050~56978145 hsa-miR-4790-3p 0 1 0
chr9:33029885~33030667 hsa-miR-4790-3p 0 1 0
chr13:31150947~31151178 hsa-miR-4790-3p 0 1 0
chr7:158629095~158629351 hsa-miR-4790-3p 0 1 0
chr7:47276268~47276378 hsa-miR-4790-3p 0 1 0
chr16:50779759~50779870 hsa-miR-4790-3p 0 1 0
chr21:16907838~16907963 hsa-miR-4790-3p 0 1 0
chr4:2924619~2924744 hsa-miR-4790-3p 0 1 0
chr19:51823941~51824108 hsa-miR-4790-3p 0 1 0
chr2:20202368~20202596 hsa-miR-4790-3p 0 1 0
chr10:88935311~88935418 hsa-miR-4790-3p 0 1 0
chr19:3547315|3547481 hsa-miR-4790-3p 0 1 0
chr4:86928585|86928811 hsa-miR-4790-3p 0 1 0
chr1:44510917|44511050 hsa-miR-4790-3p 0 1 0
chr1:28149858|28150059 hsa-miR-4790-3p 0 1 0
chr14:103342266|103342523 hsa-miR-4790-3p 0 1 0
chr4:105219621|105219768 hsa-miR-4790-3p 0 1 0
chr13:71778889|71779013 hsa-miR-4790-3p 0 1 0
chr14:55316350|55316489 hsa-miR-4790-3p 0 1 0
chr10:73160434|73160548 hsa-miR-4790-3p 1 0 0
chr22:46918603|46918770 hsa-miR-4790-3p 1 0 0
chr10:125112660|125112801 hsa-miR-4790-3p 0 1 0
chr11:309069|309293 hsa-miR-4790-3p 0 1 0
chr8:140096572|140096675 hsa-miR-4790-3p 0 1 0
chr1:197539088|197539252 hsa-miR-4790-3p 0 1 0
chrX:68293991|68294043 hsa-miR-4790-3p 0 1 0
chr2:33134793|33134960 hsa-miR-4790-3p 0 1 0
chr6:90573860|90574075 hsa-miR-4790-3p 1 0 0
chr2:69247612|69247748 hsa-miR-4790-3p 1 0 0
chr6:32848731|32849062 hsa-miR-4790-3p 1 0 0
chr2:96250227|96250437 hsa-miR-4790-3p 0 1 0
chr1:161118065|161118239 hsa-miR-4790-3p 0 1 0
chr7:104854977|104855256 hsa-miR-4790-3p 0 1 0
chr2:74891891|74892014 hsa-miR-4790-3p 0 1 0
chr3:122636267|122636378 hsa-miR-4790-3p 0 1 0
chr17:78853644|78853861 hsa-miR-4790-3p 0 1 0
chr22:41527741|41528014 hsa-miR-4790-3p 0 1 0
chr17:39995616|39995726 hsa-miR-4790-3p 0 1 0
chr22:41527938|41528014 hsa-miR-4790-3p 0 1 0
chr4:87982513|87982633 hsa-miR-4790-3p 0 1 0
chr13:72778187|72778380 hsa-miR-4790-3p 0 1 0
chr3:50363356|50363479 hsa-miR-4790-3p 0 1 0
chr19:38870670|38870849 hsa-miR-4790-3p 0 1 0
chr22:41256038|41256260 hsa-miR-4790-3p 0 1 0
chr9:33030446|33030586 hsa-miR-4790-3p 0 1 0
chr2:20202384|20202559 hsa-miR-4790-3p 0 1 0
chr13:49451553|49451909 hsa-miR-4790-3p 0 1 0
chr4:87981762|87982633 hsa-miR-4790-3p 0 1 0
chr2:20202298|20202538 hsa-miR-4790-3p 0 1 0
chr5:37695189|37695271 hsa-miR-4790-3p 0 1 0
chr11:12720676|12720821 hsa-miR-4790-3p 0 1 0
chr2:20202213|20202538 hsa-miR-4790-3p 0 1 0
chr1:28149902|28150112 hsa-miR-4790-3p 0 1 0
chr1:32330627|32330886 hsa-miR-4790-3p 0 1 0
chr19:35654588|35658628 hsa-miR-4790-3p 0 1 0
chr12:118145161|118145387 hsa-miR-4790-3p 0 1 0
chr6:47286325|47286502 hsa-miR-4790-3p 0 1 0
chr22:41256030|41256223 hsa-miR-4790-3p 0 1 0
chr19:47403649|47403756 hsa-miR-4790-3p 0 1 0
chr4:76234367|76234516 hsa-miR-4790-3p 0 1 0
chr4:87982540|87982633 hsa-miR-4790-3p 0 1 0
chr9:123257313|123257530 hsa-miR-4790-3p 0 1 0
chr7:91871257|91871366 hsa-miR-4790-3p 0 1 0
chr2:222558394|222558551 hsa-miR-4790-3p 0 1 0
chr22:41256038|41256290 hsa-miR-4790-3p 0 1 0
chr21:15030598|15030751 hsa-miR-4790-3p 0 1 0
chr3:128069900|128069995 hsa-miR-4790-3p 0 1 0
chr1:27970878|27971219 hsa-miR-4790-3p 0 1 0
chr2:20202368|20202518 hsa-miR-4790-3p 0 1 0
chr1:53038921|53039030 hsa-miR-4790-3p 0 1 0
chr16:50779769|50779902 hsa-miR-4790-3p 0 1 0
chr2:20202384|20202518 hsa-miR-4790-3p 0 1 0
chr2:20202396|20202518 hsa-miR-4790-3p 0 1 0
chr18:63214386|63214673 hsa-miR-4790-3p -12 1 0
chr19:13144416|13144507 hsa-miR-4790-3p 1 0 0
chr19:49988581|49988721 hsa-miR-4790-3p 1 0 0
chrX:104119795|104119951 hsa-miR-4790-3p 1 0 0
chr21:41465871|41466024 hsa-miR-4790-3p 0 1 0
chr19:38870670|38870846 hsa-miR-4790-3p 0 1 0
chr2:20202360|20202568 hsa-miR-4790-3p 0 1 0
chr5:147393694|147393983 hsa-miR-4790-3p 0 1 0
chr2:96250220|96250347 hsa-miR-4790-3p 0 1 0
chr9:120866936|120869326 hsa-miR-4790-3p 0 1 0
chr8:97725657|97726030 hsa-miR-4790-3p 0 1 0
chr13:27954332|27954425 hsa-miR-4790-3p 0 1 0
chr19:12679881|12680274 hsa-miR-4790-3p 0 1 0
chr5:176339816|176339955 hsa-miR-4790-3p 0 1 0
chr11:62574736|62574845 hsa-miR-4790-3p 0 1 0
chr2:20202415|20202801 hsa-miR-4790-3p 0 1 0
chr1:168253816|168254098 hsa-miR-4790-3p 0 1 0
chr17:38726488|38726624 hsa-miR-4790-3p 0 1 0
chr9:112872326|112872483 hsa-miR-4790-3p 0 1 0
chr11:47690736|47690834 hsa-miR-4790-3p 0 1 0
chr6:130869842|130870078 hsa-miR-4790-3p 1 0 0
chr4:172985612|172985772 hsa-miR-4790-3p 1 0 0
chr19:18991396|18991638 hsa-miR-4790-3p 1 0 0
chr1:161163044|161163948 hsa-miR-4790-3p 1 0 0
chr20:34988969|34989103 hsa-miR-4790-3p 1 0 0
Target genes
miRNA Gene Gene Description HGNC ID details
hsa-miR-4790-3p TMC7 transmembrane channel like 7 HGNC:23000 details
hsa-miR-4790-3p CD274 CD274 molecule HGNC:17635 details
hsa-miR-4790-3p details
hsa-miR-4790-3p RYBP RING1 and YY1 binding protein HGNC:10480 details
hsa-miR-4790-3p GABRB1 gamma-aminobutyric acid type A receptor subunit beta1 HGNC:4081 details
hsa-miR-4790-3p STAMBP STAM binding protein HGNC:16950 details
hsa-miR-4790-3p ZNF451 zinc finger protein 451 HGNC:21091 details
hsa-miR-4790-3p DRAXIN dorsal inhibitory axon guidance protein HGNC:25054 details
hsa-miR-4790-3p PCCB propionyl-CoA carboxylase subunit beta HGNC:8654 details
hsa-miR-4790-3p DTHD1 death domain containing 1 HGNC:37261 details
hsa-miR-4790-3p AGAP9 ArfGAP with GTPase domain, ankyrin repeat and PH domain 9 HGNC:23463 details
hsa-miR-4790-3p ATP13A4 ATPase 13A4 HGNC:25422 details
hsa-miR-4790-3p PIGS phosphatidylinositol glycan anchor biosynthesis class S HGNC:14937 details
hsa-miR-4790-3p AKAP5 A-kinase anchoring protein 5 HGNC:375 details
hsa-miR-4790-3p LIX1L limb and CNS expressed 1 like HGNC:28715 details
hsa-miR-4790-3p HASPIN histone H3 associated protein kinase HGNC:19682 details
hsa-miR-4790-3p MRPS21 mitochondrial ribosomal protein S21 HGNC:14046 details
hsa-miR-4790-3p ZNF8 zinc finger protein 8 HGNC:13154 details
hsa-miR-4790-3p SPART spartin HGNC:18514 details
hsa-miR-4790-3p SMIM13 small integral membrane protein 13 HGNC:27356 details
hsa-miR-4790-3p SLC35F1 solute carrier family 35 member F1 HGNC:21483 details
hsa-miR-4790-3p POU2F1 POU class 2 homeobox 1 HGNC:9212 details
hsa-miR-4790-3p details
hsa-miR-4790-3p EFNA1 ephrin A1 HGNC:3221 details
hsa-miR-4790-3p CRTC2 CREB regulated transcription coactivator 2 HGNC:27301 details
hsa-miR-4790-3p AMER1 APC membrane recruitment protein 1 HGNC:26837 details
hsa-miR-4790-3p details
hsa-miR-4790-3p details
hsa-miR-4790-3p BAK1 BCL2 antagonist/killer 1 HGNC:949 details
hsa-miR-4790-3p GGACT gamma-glutamylamine cyclotransferase HGNC:25100 details
hsa-miR-4790-3p C12orf4 chromosome 12 open reading frame 4 HGNC:1184 details
hsa-miR-4790-3p SERBP1 SERPINE1 mRNA binding protein 1 HGNC:17860 details
hsa-miR-4790-3p KLHL36 kelch like family member 36 HGNC:17844 details
hsa-miR-4790-3p DCTN5 dynactin subunit 5 HGNC:24594 details
hsa-miR-4790-3p FTH1 ferritin heavy chain 1 HGNC:3976 details
hsa-miR-4790-3p ZFP62 ZFP62 zinc finger protein HGNC:23241 details
hsa-miR-4790-3p PSAT1 phosphoserine aminotransferase 1 HGNC:19129 details
hsa-miR-4790-3p ERCC8 ERCC excision repair 8, CSA ubiquitin ligase complex subunit HGNC:3439 details
hsa-miR-4790-3p ANKRD42 ankyrin repeat domain 42 HGNC:26752 details
hsa-miR-4790-3p EMP2 epithelial membrane protein 2 HGNC:3334 details
hsa-miR-4790-3p SLC28A1 solute carrier family 28 member 1 HGNC:11001 details
hsa-miR-4790-3p ALG10B ALG10 alpha-1,2-glucosyltransferase B HGNC:31088 details
hsa-miR-4790-3p ZNF333 zinc finger protein 333 HGNC:15624 details
hsa-miR-4790-3p ZNF585B zinc finger protein 585B HGNC:30948 details
hsa-miR-4790-3p PRR3 proline rich 3 HGNC:21149 details
hsa-miR-4790-3p IPMK inositol polyphosphate multikinase HGNC:20739 details
hsa-miR-4790-3p EGLN1 egl-9 family hypoxia inducible factor 1 HGNC:1232 details
hsa-miR-4790-3p WDR26 WD repeat domain 26 HGNC:21208 details
hsa-miR-4790-3p CCNT2 cyclin T2 HGNC:1600 details
hsa-miR-4790-3p CCDC6 coiled-coil domain containing 6 HGNC:18782 details
hsa-miR-4790-3p SLC2A5 solute carrier family 2 member 5 HGNC:11010 details
hsa-miR-4790-3p SESN2 sestrin 2 HGNC:20746 details
hsa-miR-4790-3p SERP1 stress associated endoplasmic reticulum protein 1 HGNC:10759 details
hsa-miR-4790-3p PPM1L protein phosphatase, Mg2+/Mn2+ dependent 1L HGNC:16381 details
hsa-miR-4790-3p MCC MCC regulator of WNT signaling pathway HGNC:6935 details
hsa-miR-4790-3p FAM217B family with sequence similarity 217 member B HGNC:16170 details
hsa-miR-4790-3p ZNF749 zinc finger protein 749 HGNC:32783 details
hsa-miR-4790-3p NDUFA12 NADH:ubiquinone oxidoreductase subunit A12 HGNC:23987 details
hsa-miR-4790-3p BUB1 BUB1 mitotic checkpoint serine/threonine kinase HGNC:1148 details
hsa-miR-4790-3p NCAM2 neural cell adhesion molecule 2 HGNC:7657 details
hsa-miR-4790-3p FOXC1 forkhead box C1 HGNC:3800 details
hsa-miR-4790-3p PIGP phosphatidylinositol glycan anchor biosynthesis class P HGNC:3046 details
hsa-miR-4790-3p CRK CRK proto-oncogene, adaptor protein HGNC:2362 details
hsa-miR-4790-3p ERBB2 erb-b2 receptor tyrosine kinase 2 HGNC:3430 details
hsa-miR-4790-3p POU3F3 POU class 3 homeobox 3 HGNC:9216 details
hsa-miR-4790-3p XKR4 XK related 4 HGNC:29394 details
hsa-miR-4790-3p SMIM7 small integral membrane protein 7 HGNC:28419 details
hsa-miR-4790-3p FOXK2 forkhead box K2 HGNC:6036 details
hsa-miR-4790-3p FRRS1 ferric chelate reductase 1 HGNC:27622 details
hsa-miR-4790-3p FOXE1 forkhead box E1 HGNC:3806 details
hsa-miR-4790-3p APOA5 apolipoprotein A5 HGNC:17288 details
hsa-miR-4790-3p SV2B synaptic vesicle glycoprotein 2B HGNC:16874 details
hsa-miR-4790-3p GLUD1 glutamate dehydrogenase 1 HGNC:4335 details
hsa-miR-4790-3p GLUD2 glutamate dehydrogenase 2 HGNC:4336 details
hsa-miR-4790-3p ATXN1L ataxin 1 like HGNC:33279 details
hsa-miR-4790-3p CDC37 cell division cycle 37, HSP90 cochaperone HGNC:1735 details
hsa-miR-4790-3p NXPH2 neurexophilin 2 HGNC:8076 details
hsa-miR-4790-3p RBM14-RBM4 RBM14-RBM4 readthrough HGNC:38840 details
hsa-miR-4790-3p details
hsa-miR-4790-3p UBE2D3 ubiquitin conjugating enzyme E2 D3 HGNC:12476 details
hsa-miR-4790-3p DSN1 DSN1 component of MIS12 kinetochore complex HGNC:16165 details
hsa-miR-4790-3p MBD5 methyl-CpG binding domain protein 5 HGNC:20444 details
hsa-miR-4790-3p RIF1 replication timing regulatory factor 1 HGNC:23207 details
hsa-miR-4790-3p VSNL1 visinin like 1 HGNC:12722 details
hsa-miR-4790-3p ZNF584 zinc finger protein 584 HGNC:27318 details
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab