miRNA Card

miRNA General Information
miRNA ID hsa-miR-5009-3p
Description Homo sapiens miR-5009 stem-loop
Comment None
Experiment
Sequence UCCUAAAUCUGAAAGUCCAAAA
miRNA Expression in different cancers

    by mir_boxplot.py

circRNA-miRNA-gene regulatory network

Note about Netwrok:
This is a network diagram with miRNA (purple circle) as the center.
We used three tools(PITA, miRanda, targetScan) to predict the binding sites of circrna (green circle) and miRNA. Accordingly, for this miRNA that binds to circrna, we have three confidence levels, namely confident 1, confident 2 and confident 3. Confidence value indicates how many tools can deduce these results. For each confidence, we use different kinds of dashed lines.

Target circRNA with confidence

Confidence 3 (3 of 3 tools predicted)

CircID miRNA PITA miRanda targetScan
chr17:39415026|39419918 hsa-miR-5009-3p 1 1 1

Confidence 2 (2 of 3 tools predicted)

CircID miRNA PITA miRanda targetScan

Confidence 1 (1 of 3 tools predicted)

CircID miRNA PITA miRanda targetScan
chr14:103558823|103558974 hsa-miR-5009-3p 0 1 0
chr11:130143428|130143566 hsa-miR-5009-3p 0 1 0
chr8:96230032|96230163 hsa-miR-5009-3p 0 1 0
chr11:62527007|62527207 hsa-miR-5009-3p 0 1 0
chr8:10724573|10724681 hsa-miR-5009-3p 0 1 0
chr12:121916485|121916587 hsa-miR-5009-3p 0 1 0
chr1:228494095|228494404 hsa-miR-5009-3p 0 1 0
chr3:9789549|9789870 hsa-miR-5009-3p 0 1 0
chr3:9789549|9789815 hsa-miR-5009-3p 0 1 0
chr3:9789549|9789935 hsa-miR-5009-3p 0 1 0
chr11:33077220|33077352 hsa-miR-5009-3p 0 1 0
chr2:177616954|177617116 hsa-miR-5009-3p 0 1 0
chr1:154206945|154207067 hsa-miR-5009-3p 0 1 0
chr2:230185994|230186079 hsa-miR-5009-3p 0 1 0
chr1:228494286|228494393 hsa-miR-5009-3p 0 1 0
chr3:120396566|120396746 hsa-miR-5009-3p 0 1 0
chr19:8465347|8465500 hsa-miR-5009-3p 0 1 0
chrX:154011759|154011895 hsa-miR-5009-3p 0 1 0
chr16:31190347|31190986 hsa-miR-5009-3p 0 1 0
chr16:47232|47555 hsa-miR-5009-3p 0 1 0
chr17:1345315|1345414 hsa-miR-5009-3p 0 1 0
chr11:62526986|62527126 hsa-miR-5009-3p 0 1 0
chr11:65424530|65424703 hsa-miR-5009-3p 0 1 0
chr1:156737413|156737708 hsa-miR-5009-3p 0 1 0
chr18:12987080|12987253 hsa-miR-5009-3p 0 1 0
chr20:36256535|36256664 hsa-miR-5009-3p 0 1 0
chr17:48060225|48060493 hsa-miR-5009-3p 0 1 0
chr17:50196637|50197217 hsa-miR-5009-3p 0 1 0
chr17:1345320|1345411 hsa-miR-5009-3p 0 1 0
chr19:4676794|4676993 hsa-miR-5009-3p 0 1 0
chr11:62526979|62527179 hsa-miR-5009-3p 0 1 0
chr1:228494286|228494474 hsa-miR-5009-3p 0 1 0
chr1:228494286~228494474 hsa-miR-5009-3p 0 1 0
chr11:65424567~65424703 hsa-miR-5009-3p 0 1 0
chr16:31190347~31190986 hsa-miR-5009-3p 0 1 0
chr1:154206945~154207067 hsa-miR-5009-3p 0 1 0
chr9:83956411~83956566 hsa-miR-5009-3p 0 1 0
chr19:30013252~30013401 hsa-miR-5009-3p 0 1 0
chr18:9945287~9945441 hsa-miR-5009-3p 0 1 0
chr14:103558823~103558974 hsa-miR-5009-3p 0 1 0
chr1:28147638~28147795 hsa-miR-5009-3p 0 1 0
chr1:228494286~228494393 hsa-miR-5009-3p 0 1 0
chr6:43132101~43132484 hsa-miR-5009-3p 0 1 0
chr16:47341~47557 hsa-miR-5009-3p 0 1 0
chr2:230185994~230186074 hsa-miR-5009-3p 0 1 0
chr2:241322007|241322175 hsa-miR-5009-3p 0 1 0
chr6:52468389|52468521 hsa-miR-5009-3p 0 1 0
chr11:2947097|2947265 hsa-miR-5009-3p 0 1 0
chr11:57551819|57551963 hsa-miR-5009-3p 0 1 0
chr16:88577310|88577522 hsa-miR-5009-3p 0 1 0
chr2:239057964|239058089 hsa-miR-5009-3p 0 1 0
chr1:39478548|39478645 hsa-miR-5009-3p 0 1 0
chr6:38094842|38095062 hsa-miR-5009-3p 0 1 0
chr1:228494241|228494393 hsa-miR-5009-3p 0 1 0
chr1:76233527|76233670 hsa-miR-5009-3p 0 1 0
chr10:112819719|112819854 hsa-miR-5009-3p 0 1 0
chr10:113904880|113905036 hsa-miR-5009-3p 0 1 0
chr11:33077215|33077428 hsa-miR-5009-3p 0 1 0
chr11:130143413|130143563 hsa-miR-5009-3p 0 1 0
chrX:154011726|154011891 hsa-miR-5009-3p 0 1 0
chr1:44803977|44804246 hsa-miR-5009-3p 0 1 0
chrX:154011765|154011891 hsa-miR-5009-3p 0 1 0
chr3:120396566|120396706 hsa-miR-5009-3p 0 1 0
chr16:67233950|67234101 hsa-miR-5009-3p 0 1 0
chr2:38297870|38298045 hsa-miR-5009-3p 0 1 0
chrX:149937688|149937849 hsa-miR-5009-3p 0 1 0
chr17:44076110|44076297 hsa-miR-5009-3p 0 1 0
chr17:4718270|4718662 hsa-miR-5009-3p 0 1 0
chr12:121916416|121916587 hsa-miR-5009-3p 0 1 0
chr11:3087849|3087941 hsa-miR-5009-3p 0 1 0
chr2:181922270|181922412 hsa-miR-5009-3p 0 1 0
chr12:101922123|101922509 hsa-miR-5009-3p 0 1 0
chr6:47000081|47000257 hsa-miR-5009-3p 0 1 0
chr3:188888165|188888358 hsa-miR-5009-3p 0 1 0
chr2:219248286|219248570 hsa-miR-5009-3p 0 1 0
chr20:36256551|36256673 hsa-miR-5009-3p 0 1 0
chr11:130143364|130143469 hsa-miR-5009-3p 0 1 0
chrX:101035613|101038051 hsa-miR-5009-3p 0 1 0
chr1:51333198|51333463 hsa-miR-5009-3p 0 1 0
chr1:56579194|56579326 hsa-miR-5009-3p 0 1 0
chr20:10420638|10420754 hsa-miR-5009-3p 0 1 0
chr12:121916400|121916587 hsa-miR-5009-3p 0 1 0
chr17:35264194|35264456 hsa-miR-5009-3p 0 1 0
chrX:154011726|154011900 hsa-miR-5009-3p 0 1 0
chr8:23018402|23018603 hsa-miR-5009-3p 0 1 0
chrX:154011726|154011864 hsa-miR-5009-3p 0 1 0
chr3:99849329|99849473 hsa-miR-5009-3p 0 1 0
chr8:11843271|11843430 hsa-miR-5009-3p 0 1 0
chr12:121916406|121916587 hsa-miR-5009-3p 0 1 0
chr18:12987050|12987253 hsa-miR-5009-3p 0 1 0
chr8:132622611|132661627 hsa-miR-5009-3p 0 1 0
chr5:177611173|177611261 hsa-miR-5009-3p -2 1 0
chr12:121916416|121916595 hsa-miR-5009-3p -1 1 0
chrX:154011726|154011881 hsa-miR-5009-3p -7 1 0
chr19:3976942|3977128 hsa-miR-5009-3p 0 1 0
chr11:62526986|62527104 hsa-miR-5009-3p 0 1 0
chr3:99849336|99849473 hsa-miR-5009-3p 0 1 0
chr2:105360922|105361037 hsa-miR-5009-3p 0 1 0
chr15:59116787|59116926 hsa-miR-5009-3p 0 1 0
chrX:154011726|154011895 hsa-miR-5009-3p 0 1 0
chr20:36256535|36256673 hsa-miR-5009-3p 0 1 0
chr2:120176670|120176837 hsa-miR-5009-3p 0 1 0
chr19:8465400|8466270 hsa-miR-5009-3p 0 1 0
chr1:228494197|228494393 hsa-miR-5009-3p 0 1 0
chrX:154011726|154011877 hsa-miR-5009-3p 0 1 0
chrX:154011726|154011917 hsa-miR-5009-3p 0 1 0
chrX:154011759|154011881 hsa-miR-5009-3p 0 1 0
chr1:154206818|154207067 hsa-miR-5009-3p 0 1 0
Target genes
miRNA Gene Gene Description HGNC ID details
hsa-miR-5009-3p CIT citron rho-interacting serine/threonine kinase HGNC:1985 details
hsa-miR-5009-3p TBC1D19 TBC1 domain family member 19 HGNC:25624 details
hsa-miR-5009-3p STOM stomatin HGNC:3383 details
hsa-miR-5009-3p details
hsa-miR-5009-3p ST6GAL1 ST6 beta-galactoside alpha-2,6-sialyltransferase 1 HGNC:10860 details
hsa-miR-5009-3p ZNF460 zinc finger protein 460 HGNC:21628 details
hsa-miR-5009-3p LYSMD3 LysM domain containing 3 HGNC:26969 details
hsa-miR-5009-3p CCND1 cyclin D1 HGNC:1582 details
hsa-miR-5009-3p HES7 hes family bHLH transcription factor 7 HGNC:15977 details
hsa-miR-5009-3p DTX3L deltex E3 ubiquitin ligase 3L HGNC:30323 details
hsa-miR-5009-3p ZMAT3 zinc finger matrin-type 3 HGNC:29983 details
hsa-miR-5009-3p details
hsa-miR-5009-3p ZNF121 zinc finger protein 121 HGNC:12904 details
hsa-miR-5009-3p RPL15 ribosomal protein L15 HGNC:10306 details
hsa-miR-5009-3p CSNK2A1 casein kinase 2 alpha 1 HGNC:2457 details
hsa-miR-5009-3p MFN1 mitofusin 1 HGNC:18262 details
hsa-miR-5009-3p GALNT11 polypeptide N-acetylgalactosaminyltransferase 11 HGNC:19875 details
hsa-miR-5009-3p KCNJ1 potassium inwardly rectifying channel subfamily J member 1 HGNC:6255 details
hsa-miR-5009-3p ICMT isoprenylcysteine carboxyl methyltransferase HGNC:5350 details
hsa-miR-5009-3p TNFRSF10D TNF receptor superfamily member 10d HGNC:11907 details
hsa-miR-5009-3p TMED7 transmembrane p24 trafficking protein 7 HGNC:24253 details
hsa-miR-5009-3p ST6GALNAC3 ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 3 HGNC:19343 details
hsa-miR-5009-3p SENP1 SUMO specific peptidase 1 HGNC:17927 details
hsa-miR-5009-3p PIGA phosphatidylinositol glycan anchor biosynthesis class A HGNC:8957 details
hsa-miR-5009-3p ADD2 adducin 2 HGNC:244 details
hsa-miR-5009-3p CCNG1 cyclin G1 HGNC:1592 details
hsa-miR-5009-3p VEZF1 vascular endothelial zinc finger 1 HGNC:12949 details
hsa-miR-5009-3p RBM7 RNA binding motif protein 7 HGNC:9904 details
hsa-miR-5009-3p DCUN1D3 defective in cullin neddylation 1 domain containing 3 HGNC:28734 details
hsa-miR-5009-3p ARIH1 ariadne RBR E3 ubiquitin protein ligase 1 HGNC:689 details
hsa-miR-5009-3p SAMD8 sterile alpha motif domain containing 8 HGNC:26320 details
hsa-miR-5009-3p ATP13A3 ATPase 13A3 HGNC:24113 details
hsa-miR-5009-3p ERGIC2 ERGIC and golgi 2 HGNC:30208 details
hsa-miR-5009-3p CDC5L cell division cycle 5 like HGNC:1743 details
hsa-miR-5009-3p SLC23A1 solute carrier family 23 member 1 HGNC:10974 details
hsa-miR-5009-3p TSC22D2 TSC22 domain family member 2 HGNC:29095 details
hsa-miR-5009-3p ANKRD52 ankyrin repeat domain 52 HGNC:26614 details
hsa-miR-5009-3p TMEM218 transmembrane protein 218 HGNC:27344 details
hsa-miR-5009-3p DIO2 iodothyronine deiodinase 2 HGNC:2884 details
hsa-miR-5009-3p C1orf21 chromosome 1 open reading frame 21 HGNC:15494 details
hsa-miR-5009-3p LYRM2 LYR motif containing 2 HGNC:25229 details
hsa-miR-5009-3p STAT1 signal transducer and activator of transcription 1 HGNC:11362 details
hsa-miR-5009-3p PTPRB protein tyrosine phosphatase receptor type B HGNC:9665 details
hsa-miR-5009-3p SND1 staphylococcal nuclease and tudor domain containing 1 HGNC:30646 details
hsa-miR-5009-3p COMMD2 COMM domain containing 2 HGNC:24993 details
hsa-miR-5009-3p MEIOC meiosis specific with coiled-coil domain HGNC:26670 details
hsa-miR-5009-3p RNF152 ring finger protein 152 HGNC:26811 details
hsa-miR-5009-3p TRIM44 tripartite motif containing 44 HGNC:19016 details
hsa-miR-5009-3p SCYL3 SCY1 like pseudokinase 3 HGNC:19285 details
hsa-miR-5009-3p LIAS lipoic acid synthetase HGNC:16429 details
hsa-miR-5009-3p ONECUT3 one cut homeobox 3 HGNC:13399 details
hsa-miR-5009-3p GJD3 gap junction protein delta 3 HGNC:19147 details
hsa-miR-5009-3p THEM4 thioesterase superfamily member 4 HGNC:17947 details
hsa-miR-5009-3p TRIM23 tripartite motif containing 23 HGNC:660 details
hsa-miR-5009-3p MYPN myopalladin HGNC:23246 details
hsa-miR-5009-3p details
hsa-miR-5009-3p POU2F1 POU class 2 homeobox 1 HGNC:9212 details
hsa-miR-5009-3p GRK1 G protein-coupled receptor kinase 1 HGNC:10013 details
hsa-miR-5009-3p CCBE1 collagen and calcium binding EGF domains 1 HGNC:29426 details
hsa-miR-5009-3p PDS5A PDS5 cohesin associated factor A HGNC:29088 details
hsa-miR-5009-3p CLPB caseinolytic mitochondrial matrix peptidase chaperone subunit B HGNC:30664 details
hsa-miR-5009-3p PEA15 proliferation and apoptosis adaptor protein 15 HGNC:8822 details
hsa-miR-5009-3p GPR107 G protein-coupled receptor 107 HGNC:17830 details
hsa-miR-5009-3p IER3 immediate early response 3 HGNC:5392 details
hsa-miR-5009-3p SALL4 spalt like transcription factor 4 HGNC:15924 details
hsa-miR-5009-3p SH3TC2 SH3 domain and tetratricopeptide repeats 2 HGNC:29427 details
hsa-miR-5009-3p RUNDC3B RUN domain containing 3B HGNC:30286 details
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab