miRNA Card

miRNA General Information
miRNA ID hsa-miR-548al
Description Homo sapiens miR-548al stem-loop
Comment None
Experiment Illumina [1]
Sequence AACGGCAAUGACUUUUGUACCA
miRNA Expression in different cancers

    by mir_boxplot.py

circRNA-miRNA-gene regulatory network

Note about Netwrok:
This is a network diagram with miRNA (purple circle) as the center.
We used three tools(PITA, miRanda, targetScan) to predict the binding sites of circrna (green circle) and miRNA. Accordingly, for this miRNA that binds to circrna, we have three confidence levels, namely confident 1, confident 2 and confident 3. Confidence value indicates how many tools can deduce these results. For each confidence, we use different kinds of dashed lines.

Target circRNA with confidence

Confidence 3 (3 of 3 tools predicted)

CircID miRNA PITA miRanda targetScan

Confidence 1 (1 of 3 tools predicted)

CircID miRNA PITA miRanda targetScan
chr5:150403161|150403289 hsa-miR-548al 0 1 0
chr5:178210132|178210272 hsa-miR-548al 0 1 0
chr9:121059600|121059733 hsa-miR-548al 0 1 0
chr11:824885|824995 hsa-miR-548al 0 1 0
chr22:24712355|24712493 hsa-miR-548al 0 1 0
chr5:83542070|83542268 hsa-miR-548al 0 1 0
chr12:49758383|49758762 hsa-miR-548al 0 1 0
chr22:37677046|37678654 hsa-miR-548al 0 1 0
chr11:824885|824986 hsa-miR-548al 0 1 0
chr16:88808594|88808725 hsa-miR-548al 0 1 0
chr1:43704270|43704381 hsa-miR-548al 0 1 0
chr5:83542101|83545561 hsa-miR-548al 0 1 0
chr7:130120808|130120903 hsa-miR-548al 0 1 0
chr11:824897|824986 hsa-miR-548al 0 1 0
chr11:824866|824986 hsa-miR-548al 0 1 0
chr1:151248904|151249089 hsa-miR-548al 0 1 0
chr1:43704276|43704381 hsa-miR-548al 0 1 0
chr10:5525341|5525448 hsa-miR-548al 0 1 0
chr3:45085189|45085364 hsa-miR-548al 0 1 0
chr1:30965982|30966162 hsa-miR-548al 0 1 0
chr22:24712319|24712493 hsa-miR-548al 0 1 0
chr8:42180014|42180311 hsa-miR-548al 0 1 0
chr19:3630817|3630931 hsa-miR-548al 0 1 0
chr17:82648274|82648401 hsa-miR-548al 0 1 0
chr11:824932|825054 hsa-miR-548al 0 1 0
chr11:824866|825054 hsa-miR-548al 0 1 0
chr10:102111256|102111498 hsa-miR-548al 0 1 0
chr7:150373636|150373775 hsa-miR-548al 0 1 0
chr8:42179961|42180317 hsa-miR-548al 0 1 0
chr16:67436358~67436745 hsa-miR-548al 0 1 0
chr11:824866~825048 hsa-miR-548al 0 1 0
chr4:118279389~118279701 hsa-miR-548al 0 1 0
chr3:67844248~67844352 hsa-miR-548al 0 1 0
chr11:824872~825054 hsa-miR-548al 0 1 0
chr11:824932~825048 hsa-miR-548al 0 1 0
chr12:49758230~49758480 hsa-miR-548al 0 1 0
chr5:83542166|83542268 hsa-miR-548al 0 1 0
chr5:150403121~150403301 hsa-miR-548al 0 1 0
chr9:129810048~129810147 hsa-miR-548al 0 1 0
chr12:54517817~54517938 hsa-miR-548al 0 1 0
chr22:24712350~24712493 hsa-miR-548al 0 1 0
chr20:1165330|1165598 hsa-miR-548al 0 1 0
chr12:49758383~49758762 hsa-miR-548al 0 1 0
chr22:42209701~42209805 hsa-miR-548al 0 1 0
chr10:73824258|73824410 hsa-miR-548al 0 1 0
chr17:50397213|50397485 hsa-miR-548al 0 1 0
chr10:48453117|48453292 hsa-miR-548al 0 1 0
chr2:97760651|97760895 hsa-miR-548al 0 1 0
chr14:105926650|105926790 hsa-miR-548al 0 1 0
chr3:31593130|31593283 hsa-miR-548al 0 1 0
chr3:197884693|197884861 hsa-miR-548al 0 1 0
chr11:126265782|126265885 hsa-miR-548al 0 1 0
chr20:3036711|3036923 hsa-miR-548al 0 1 0
chr7:33035870|33035975 hsa-miR-548al 1 0 0
chr10:46005256|46005426 hsa-miR-548al 1 0 0
chr7:100210556|100210707 hsa-miR-548al 1 0 0
chr9:33625117|33625268 hsa-miR-548al 0 1 0
chr10:6062161|6062287 hsa-miR-548al 0 1 0
chr7:150742725|150742870 hsa-miR-548al 0 1 0
chr2:97760793|97760895 hsa-miR-548al 0 1 0
chr11:17089366|17089555 hsa-miR-548al 0 1 0
chr12:49758253|49758480 hsa-miR-548al 0 1 0
chr10:43556272|43556486 hsa-miR-548al 0 1 0
chr6:119348334|119348464 hsa-miR-548al 0 1 0
chr12:111362204|111362439 hsa-miR-548al 0 1 0
chr18:8200115|8200249 hsa-miR-548al 0 1 0
chr11:61636192|61636392 hsa-miR-548al 0 1 0
chr8:26370180|26370369 hsa-miR-548al 0 1 0
chrX:53085981|53086127 hsa-miR-548al 0 1 0
chr11:824872|825065 hsa-miR-548al 0 1 0
chr5:150403121|150403244 hsa-miR-548al 0 1 0
chr7:27458774|27458876 hsa-miR-548al 0 1 0
chr4:102605411|102605708 hsa-miR-548al 0 1 0
chr12:88493859|88494033 hsa-miR-548al 0 1 0
chr17:62033787|62035608 hsa-miR-548al 0 1 0
chr20:49849579|49855581 hsa-miR-548al 0 1 0
chr7:130120749|130122202 hsa-miR-548al 0 1 0
chr10:65675345|65675462 hsa-miR-548al 0 1 0
chr11:824872|825048 hsa-miR-548al 0 1 0
chr5:150403121|150404707 hsa-miR-548al 0 1 0
chr8:42179961|42180298 hsa-miR-548al 0 1 0
chr4:118279393|118279701 hsa-miR-548al 0 1 0
chr7:130120712|130120903 hsa-miR-548al 0 1 0
chr1:1050427|1050583 hsa-miR-548al 0 1 0
chr16:67436611|67436745 hsa-miR-548al 0 1 0
chr8:42180017|42180298 hsa-miR-548al 0 1 0
chr3:171859693|171859891 hsa-miR-548al 0 1 0
chr9:136995186|136995461 hsa-miR-548al 0 1 0
chr1:30965982|30966186 hsa-miR-548al -7 1 0
chr17:64214066|64214240 hsa-miR-548al -9 1 0
chr9:33445320|33445469 hsa-miR-548al 1 0 0
chr6:30649574|30649734 hsa-miR-548al 1 0 0
chr18:75195323|75195487 hsa-miR-548al 0 1 0
chr19:34400509|34400695 hsa-miR-548al 0 1 0
chr11:824866|825019 hsa-miR-548al 0 1 0
chr3:43060409|43060540 hsa-miR-548al 0 1 0
chr12:100157171|100157353 hsa-miR-548al 0 1 0
chr6:43006584|43006959 hsa-miR-548al 0 1 0
chr10:5525310|5525448 hsa-miR-548al 0 1 0
chr2:38302431|38302726 hsa-miR-548al 0 1 0
chr8:84555391|84555556 hsa-miR-548al 0 1 0
chrX:130129970|130130091 hsa-miR-548al 0 1 0
chr1:151287234|151287326 hsa-miR-548al 0 1 0
chr1:30965982|30966165 hsa-miR-548al 0 1 0
chr17:28858800|28859113 hsa-miR-548al 0 1 0
chr6:32127164|32127514 hsa-miR-548al 0 1 0
chr10:6234351|6234448 hsa-miR-548al 0 1 0
chr10:80157641|80157763 hsa-miR-548al 0 1 0
chr17:40482361|40484520 hsa-miR-548al 0 1 0
chr10:23440355|23440596 hsa-miR-548al 0 1 0
chr10:68969101|68970350 hsa-miR-548al 0 1 0
chr16:67436588|67436745 hsa-miR-548al 0 1 0
chr16:1999598|1999821 hsa-miR-548al 0 1 0
chr8:143538510|143538713 hsa-miR-548al 0 1 0
chr4:118279389|118279703 hsa-miR-548al 0 1 0
chr11:12527866|12528068 hsa-miR-548al 0 1 0
chr19:11541100|11546741 hsa-miR-548al 0 1 0
chr15:74844830|74844982 hsa-miR-548al 0 1 0
chr7:100210556|100210699 hsa-miR-548al 1 0 0
chr7:76330036|76330138 hsa-miR-548al 1 0 0
Target genes
miRNA Gene Gene Description HGNC ID details
hsa-miR-548al STX6 syntaxin 6 HGNC:11441 details
hsa-miR-548al MSANTD3 Myb/SANT DNA binding domain containing 3 HGNC:23370 details
hsa-miR-548al EIF4G2 eukaryotic translation initiation factor 4 gamma 2 HGNC:3297 details
hsa-miR-548al PIP4K2A phosphatidylinositol-5-phosphate 4-kinase type 2 alpha HGNC:8997 details
hsa-miR-548al NKD2 NKD inhibitor of WNT signaling pathway 2 HGNC:17046 details
hsa-miR-548al ZNRF2 zinc and ring finger 2 HGNC:22316 details
hsa-miR-548al TRIM4 tripartite motif containing 4 HGNC:16275 details
hsa-miR-548al THUMPD3 THUMP domain containing 3 HGNC:24493 details
hsa-miR-548al MRPS18B mitochondrial ribosomal protein S18B HGNC:14516 details
hsa-miR-548al RAPGEFL1 Rap guanine nucleotide exchange factor like 1 HGNC:17428 details
hsa-miR-548al FAM186A family with sequence similarity 186 member A HGNC:26980 details
hsa-miR-548al WT1 WT1 transcription factor HGNC:12796 details
hsa-miR-548al SLC29A4 solute carrier family 29 member 4 HGNC:23097 details
hsa-miR-548al C1GALT1 core 1 synthase, glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1 HGNC:24337 details
hsa-miR-548al CAPN1 calpain 1 HGNC:1476 details
hsa-miR-548al SBK1 SH3 domain binding kinase 1 HGNC:17699 details
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab