Search by: -- GeneType -- gene miRNA
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laml : Acute Myeloid Leukemia acc: Adrenocortical Carcinoma blca: Bladder Urothelial Carcinoma lgg: Brain Lower Grade Glioma brca: Breast Invasive Carcinoma cesc: Cervical Squamous Cell Carcinoma and Endocervical Adenocarcinoma chol: Cholangiocarcinoma coad: Colon Adenocarcinoma esca: Esophageal Carcinoma gbm: Glioblastoma Multiforme hnsc: Head and Neck Squamous Cell Carcinoma kich: Kidney Chromophobe kirc: Kidney Renal Clear Cell Carcinoma kirp: Kidney Renal Papillary Cell Carcinoma lihc: Liver Hepatocellular Carcinoma luad: Lung Adenocarcinoma lusc: Lung Squamous Cell Carcinoma dlbc: Lymphoid Neoplasm Diffuse Large B-cell Lymphoma meso: Mesothelioma ov: Ovarian Serous Cystadenocarcinoma paad: Pancreatic Adenocarcinoma pcpg: Pheochromocytoma and Paraganglioma prad: Prostate Adenocarcinoma read: Rectum Adenocarcinoma sarc: Sarcoma skcm: Skin Cutaneous Melanoma stad: Stomach Adenocarcinoma tgct: Testicular Germ Cell Tumors thym: Thymoma thca: Thyroid Carcinoma ucs: Uterine Carcinosarcoma ucec: Uterine Corpus Endometrial Carcinoma uvm: Uveal Melanoma "BRCA, CHOL, LAML":GSE124617_Functional and Topographic Effects on DNA Methylation Across IDH1/2 Mutant Cancers "CHOL, LIHC":GSE60446_DNA Methyltransferase Inhibitor Zebularine Induces Human Cholangiocarcinoma Cell Death through Alteration of DNA Methylation Status "KIRP, ACC":GSE137544_An Organoid Biobank for Childhood Kidney Cancers that Captures Disease and Tissue Heterogeneity "LUAD, LUSC":GSE56044_Genome-wide DNA methylation analysis of lung carcinoma "OV, BRCA":GSE65820_Whole genome characterisation of chemoresistant ovarian cancer [Illumina_450K_Methylation] "OV, BRCA":GSE65821_Whole genome characterisation of chemoresistant ovarian cancer "OV, BRCA":GSE66872_Epigenetic Inactivation of the Putative DNA/RNA Helicase SLFN11 in Human Cancer Confers Resistance to Platinum-derived Drugs "OV, BRCA":GSE79185_The NCI-60 Methylome and Its Integration into CellMiner "OV, BRCA":GSE85293_Intra-individual tumoral heterogeneity of ovarian serous adenocarcinomas [Illumina] ACC:GSE77871_Pathway implications of aberrant global methylation in adrenocortical cancer BLCA:GSE52955_DNA Methylation Dynamics in Urological Tumors BRCA:GSE29290_Evaluation of the Infinium Methylation 450K technology BRCA:GSE39451_"Genomic, transcriptomic and epigenomic characterization of multifocal breast cancer" BRCA:GSE44837_Gene methylation profile of breast cancer cells. BRCA:GSE45958_Radiation-induced epigenetic DNA methylation modification of radiation-response pathways BRCA:GSE49794_DNA methylation analysis of breast cancer cell-lines BRCA:GSE52635_A Composite Framework for the Statistical Analysis of Epidemiological DNA Methylation Data with the Infinium Human Methylation 450K BeadChip BRCA:GSE59901_DNA methylation study in breast cancer [methylation] BRCA:GSE60185_Genome-wide DNA methylation profiles in progression to in situ and invasive carcinoma of the breast with impact on gene transcription and prognosis BRCA:GSE65085_Genome-wide analysis of gene methylation by effect of cold plasma on breast cell line MDA-MB-231. BRCA:GSE65086_Genome-wide analysis of gene methylation by effect of cold plasma on breast cell line MCF-7. BRCA:GSE66695_Genome-wide Scan for Methylation Profiles in Breast Cancer BRCA:GSE67619_Somatic cell fusions reveal extensive heterogeneity in basal-like breast cancer [methylation450] BRCA:GSE70024_Genome-wide analysis of gene methylation by effect of proton beam on breast cell line MCF-7 BRCA:GSE71626_"A common promoter hypomethylation signature in invasive breast, liver and prostate cancer cell lines reveals novel targets involved in cancer invasiveness (methylation)" BRCA:GSE72245_DNA methylation-based immune response signature improves patient diagnosis in multiple cancers (Cohort 1) BRCA:GSE72251_DNA methylation-based immune response signature improves patient diagnosis in multiple cancers (Cohort 2) BRCA:GSE72254_DNA methylation-based immune response signature improves patient diagnosis in multiple cancers (TOP Cohort) BRCA:GSE72277_DNA methylation profiling to assess pathogenicity of BRCA1 unclassified variants in breast cancer BRCA:GSE75067_Genome-wide DNA methylation analysis of breast cancer BRCA:GSE78875_Breast cancer subtype dictates DNA methylation and ALDH1A3-mediated expression of tumor suppressor RARRES1 BRCA:GSE80794_Stilbenoids remodel the DNA methylation patterns in breast cancer cells and inhibit oncogenic NOTCH signaling through epigenetic regulation of MAML2 transcriptional activity BRCA:GSE84207_DNA methylation at enhancers identifies distinct breast cancer lineages BRCA:GSE86402_DNA methylation in human DIP2C knockout cancer cells BRCA:GSE87154_Enhancer Remodeling During Adaptive Bypass to MEK Inhibition Is Attenuated by Pharmacological Targeting of the P-TEFb Complex (DNA methylation) BRCA:GSE92909_Genome-wide DNA methylation maps of histone deacetylase inhibition in triple-negative breast cancer BRCA:GSE97483_"DNA Methylation profiling in luminal breast cancer cells treated with a novel KDM5 inhibitor, 5-aza-2' Deoxycytidine, or both." BRCA:GSE110184_Epigenetic profiling of docetaxel resistance in Breast Cancer BRCA:GSE117439_DNA Methylation in Breast Cancers: Differences based on Estrogen Receptor Status and Recurrence BRCA:GSE123754_Epigenetic Silencing of TGFBI Confers Resistance to Trastuzumab in Human Breast Cancer BRCA:GSE141338_Epigenome analysis of normal ductal breast samples and infiltrating ductal breast cancer (BC) classified by tumour subtype BRCA:GSE141441_DNA Methylation Markers Predict Recurrence-free Interval in Triple-Negative Breast Cancer. CESC:GSE78277_Aberrant methylation-mediated silencing of microRNAs contributes to HPV-induced anchorage independence [methylation-Illumina] CHOL:GSE32079_Mutations in IDH1 and IDH2 are associated with DNA hypermethylation in intrahepatic cholangiocarcinomas COAD:GSE42752_Epigenetic analysis of normal colon epithelium and colon adenocarcinoma COAD:GSE61467_DNA methylation screening of small bowel adenocarcinoma COAD:GSE68060_Methyome profiling in serrated carcinoma ESCA:GSE74693_Genome-wide methylation analysis of esophageal squamous cell carcinoma using Infinium HumanMethylation 450 BeadChip ESCA:GSE79366_Spatial intratumor heterogeneity of epigenetic alterations in esophageal squamous cell carcinoma GBM:GSE32283_Mutations in IDH1 are associated with DNA hypermethylation in glioblastomas GBM:GSE36278_Methylation data from glioblastoma tumor samples GBM:GSE58218_Integrated epigenetic and copy-number profiling identifies three clinically and biologically relevant groups of anaplastic glioma GBM:GSE60274_"Genome-wide DNA methylation profiling of 68 GBM (primary & recurrent), 4 glioma spheres and 5 non-tumor brain samples" GBM:GSE63267_MLL5 orchestrates a cancer self-renewal state by repressing the histone variant H3.3 and globally reorganizing chromatin [methylation] GBM:GSE128654_"Comprehensive genomic profiling of matched glioblastoma tumors, cell-lines and xenografts reveals genomic stability and adaptation to disparate growth environments" HNSC:GSE38266_450k Analysis of 42 FFPE HPV+ and HPV- HNSCC samples HNSC:GSE38268_450k Analysis of 3 FF HPV+ and 3 FF HPV- HNSCC samples HNSC:GSE40005_Genome-wide methylation profile of head and neck squamous cell carcioma (HNSCC) HNSC:GSE79556_Genome-scale methylation assessment did not identify prognostic biomarkers in oral tongue carcinomas HNSC:GSE98807_DNA methylation analysis in head and neck cancer cells LAML:GSE62298_Genome-scale profiling of the DNA methylation landscape in human AML patients LAML:GSE89776_Pluripotent Reprogramming of Human AML Resets Leukemic Behavior and Models Therapeutic Targeting of Subclones [methylation] LAML:GSE89778_Pluripotent Reprogramming of Human AML Resets Leukemic Behavior and Models Therapeutic Targeting of Subclones LGG:GSE129477_Methylation data from cerebral tumors of WHO grade II and III LIHC:GSE42490_DNA methyltransferase inhibitor zebularine inhibits human hepatic carcinoma cells proliferation and induces apoptosis. LIHC:GSE52401_Epigenome analysis of normal lung tissue samples LIHC:GSE75041_Methylation profiling in predict recurrence hepatocellular carcinoma LIHC:GSE83691_Genomic and epigenomic architecture of hepatocellular carcinoma LIHC:GSE89852_Genome-wide DNA methylation analysis of liver tissue samples obtained from patients with hepatitis virus-related hepatocellular carcinomas LIHC:GSE99036_"Dynamics of genomic, epigenomic, and transcriptomic aberrations during stepwise hepatocarcinogenesis" LIHC:GSE113017_Comprehensive molecular characterization of liver cancer and inheritance of the phenotypic traits during tumor recurrence [methylation - classification] LIHC:GSE127828_Dynamic imbalance between cancer cell subpopulations induced by Transforming Growth Factor Beta (TGF-β) is associated with a DNA methylome switch [methylation] LUAD:GSE66836_Genome-wide DNA methylation signature in lung adenocarcinomas has prognostic impact LUAD:GSE83842_lung adenocarcinoma DNA methylation LUAD:GSE85845_DNA methylation analysis of lung adenocarcinoma and adjacent non-tumor tissues LUSC:GSE68825_caArray_EXP-598: TCGA (LUSC): Analysis of DNA Methylation for LUSC using Illumina Infinium HumanMethylation450 platform (jhu-usc) LUSC:GSE108123_"Deciphering the genomic, epigenomic and transcriptomic landscapes of pre-invasive lung cancer lesions to determine prognosis III" LUSC:GSE121849_A low DNA methylation epigenotype in squamous cell lung cancer and its association with idiopathic pulmonary fibrosis and poorer prognosis others:GSE20945_Effects of DAC treatment others:GSE38235_Integration of high-resolution methylome and transcriptome analyses to dissect epigenomic changes in childhood acute lymphoblastic leukemia others:GSE39141_Genome-wide DNA methylation profiling predicts relapse in childhood B-cell acute lymphoblastic leukemia others:GSE39279_The CURELUNG Project from the Epigenetics Side (Patients dataset) others:GSE41114_Integrative genomic characterization of oral squamous cell carcinoma identifies frequent somatic drivers (methylation) others:GSE44661_DNA methylation analysis of melanoma progression to brain metastasis others:GSE49143_The NCI60 DNA methylome others:GSE51077_The tissue is the issue: Improved methylome analysis from paraffin-embedded tissues by application of the HOPE-technique others:GSE52068_Genome-wide analysis of DNA methylation between nasopharyngeal carcinoma tissues and normal nasopharyngeal epithelial tissues others:GSE52826_the whole-genome methylation profile of esophageal squamous cell carcinoma others:GSE54719_DNA methylation changes at CpG and non-CpG sites are associated with development and clinical behavior in neuroblastoma [methylation] others:GSE54840_Acute depletion redefines the division of labor among DNA methyltransferases in methylating the human genome [methylation] others:GSE56382_Seminoma and embryonal carcinoma footprints identified by analysis of integrated genome-wide epigenetic and expression profiles of germ cell cancer cell lines (methylation data). others:GSE60787_Genome-wide DNA methylation analysis of seminoma-like TCam-2 cells during transition into an embryonal carcinoma-like state others:GSE61441_Epigenome analysis of clear cell renal cell carcinoma (ccRCC) tissue versus matched normal kidney tissue others:GSE62086_Low dose of DNA-demethylating agents target colorectal cancer-initiating cells by activation of RIG1/MAVS signaling pathway others:GSE65027_Genome-wide methylation analysis and gene expression profiling identifies genes silenced in non-seminoma cell lines [methylation] others:GSE66295_A DNA Hypomethylation Signature Predicts Novel Anti-Tumor Activity of LSD1 Inhibitors in SCLC (BeadChip) others:GSE66881_Insights into molecular characteristics of anaplastic large cell lymphoma by genome-wide DNA methylation profiling others:GSE67097_Epigenome analysis of squamous cell carcinoma samples others:GSE67283_Establishment of tractable human iPSC-based models for the study and targeting of glioma initiation (Methlyation) others:GSE68339_Interplay between promoter methylation and chromosomal loss in gene silencing at 3p11-p14 in cervical cancer others:GSE68851_Aberrant DNA methylation in Non Small Cell Lung Cancer associated fibroblasts others:GSE73549_Determining Prostate Cancer Aggressiveness Utilizing a Novel DNA Methylation Approach others:GSE75008_Down-regulation of the TGF-b pseudoreceptor BAMBI enhances TGF-b signaling and promotes invasion of Non-Small Lung Cancer: DNA methylation analysis others:GSE75073_"Validation of a DNA methylation microarray for 850,000 CpG sites of the human genome enriched in enhancer sequences" others:GSE75546_Integrated analysis of genome-wide DNA methylation and gene expression profiles identifies potential novel biomarkers of rectal cancer [methylation] others:GSE76263_Oncometabolic nuclear reprogramming of cancer stemness others:GSE76709_Genome-wide DNA methylation analysis of Romidpesin treated GCC cell lines others:GSE76938_Illumina M450 profiling of human prostate cancer tissue and benign prostate tissue others:GSE77247_DNA methylation profiling of cancer cells with genetic disruption of DNA methyltransferases others:GSE77954_Global methylation analysis of development and progression of colorectal carcinoma others:GSE80241_Epigenome analysis of PDAC cancer stem cells and non-cancer stem cells others:GSE81211_Genome-wide methylation approach identifies a novel hypermethylated gene panel in ulcerative colitis others:GSE83917_"Genomic hallmarks of localized, non-indolent prostate cancer" others:GSE84397_Analysis of DNA methylation in TET1 depleted colorectal cancer Colo320DM cells others:GSE84399_Analysis of DNA methylation in TET1 depleted colorectal cancer HCT116 cells others:GSE85529_DNA methylation profiling of four DLD1 colorectal cancer cell derivatives that recapitulate EMT/MET transitions during metastasis. others:GSE86258_Cancer Associated Fibroblasts are defined by a core set of epigenome changes that contribute to the tumor phenotype [Illumina HM450] others:GSE86355_Comprehensive Analysis of the DNA Methylome of Human Cutaneous Melanoma others:GSE88821_Methylation dataset of multi regional colorectal carcinoma. others:GSE89093_DNA methylome analysis of human peripheral blood samples in cancer discordant monozygotic twin-pairs others:GSE91370_DNA methylation of human cancer cell lines and normal cells. others:GSE92462_Characterizing the epigenome of glioma stem cells (Methylation BeadChip) others:GSE92577_Validation of the MethylationEPIC BeadChip for fresh-frozen and formalin-fixed paraffin-embedded tumours (450K) others:GSE92843_Genome-wide DNA-methylation profiles of human lung cancer cell lines and normal lung cells others:GSE93589_Identification of endometrial cancer methylation features using combined methylation analysis methods others:GSE94326_Comprehensive evaluation of genome-wide 5-hydroxymethylcytosine profiling approaches in human DNA [HumanMethylation450] others:GSE94785_Asbestos-associated genome-wide DNA methylation changes in lung cancer others:GSE97784_Identification and development of DNA methylation biomarkers for oral/oropharyngeal cancers prevalent in the North-Eastern states of India others:GSE98532_DNA methylation instability by BRAF-mediated TET silencing and lifestyle-exposure divides colon cancer pathways [3 cell lines] others:GSE98533_DNA methylation instability by BRAF-mediated TET silencing and lifestyle-exposure divides colon cancer pathways [Caco2 cell line] others:GSE99511_Identification and validation of a novel 3-gene methylation classifier for HPV-based cervical screening on self-samples others:GSE101764_ColoCare Project: Epigenome-wide analysis of DNA methylation in colorectal cancer and adjacent mucosa tissues others:GSE105288_Integrative Epigenetic and Gene Expression Analysis of Renal Tumor Progression to Metastasis others:GSE117087_Genome-wide methylation analysis of cancer-associated fibroblasts using Infinium HumanMethylation 450 BeadChip others:GSE117448_Low cytosolic folate cycling is a hallmark of U251 glioblastoma cells reprogramming towards pluripotency [methylation] others:GSE124464_DNA methylation analysis in oropharyngeal cancer [450K array] others:GSE129364_Genome-wide DNA methylation analysis of colorectal adenomas with and without recurrence reveals an association between CpG methylation and histological subtypes. others:GSE133444_DNA methylation data from renal cancer patient-derived xenograft tumor treated with temsirolimus or vehicle others:GSE140204_Development and Validation of a DNA Methylation Panel for the Prediction of Outcome in Node-Positive Penile Squamous Cell Carcinoma after Lymphadenectomy OV:GSE51820_DNA methylation profiles of primary ovarian cancers OV:GSE55613_Effects of SGI-110 on A2780 ovarian cancer xenografts OV:GSE56621_TGF-beta stimulation in ovarian cancer cells OV:GSE79312_Platinum-based chemotherapy induces methylation changes in blood and tumour DNA at time of relapse that are associated with patient survival OV:GSE81224_DNA methylome analyses implicate fallopian tube as the tissue of origin for high grade serous ovarian cancer [array] OV:GSE81438_Genome-wide methylation profiling of ovarian cancer patient-derived xenograft (PDXs) treated with the demethylating agent decitabine identifies novel epigenetically regulated genes and pathways OV:GSE103211_Comparison of DNA methylomes of human monocyte-derived dendritic cells (DCs) and myeloid-derived suppressor cells (MDSCs) generated in co-culture with ovarian carcinoma cell line (OVCAR8) during 6 days OV:GSE118405_Grainyhead-like 2 (GRHL2) and epigenetic remodeling in the intermediate states of epithelial-mesenchymal transition [MethylArray] PRAD:GSE38240_DNA methylation profiling of normal prostates and prostate cancer metastases [Illumina] PRAD:GSE47915_Human Prostate Cancer Illumina Infinium Human Methylation450 (HM450K bead array) BeadChip samples (benign vs tumor) PRAD:GSE62053_S-adenosylmethionine (SAM) changes DNA methylation patterns in prostate cancer cells PRAD:GSE74013_Epigenetic analysis of normal prostate tissue and prostate adenocarcinoma READ:GSE39958_Promoter methylation data from genomic DNA in patient with rectal cancer SARC:GSE59134_Assessment of patient-derived tumour xenografts (PDXs) as a discovery tool for cancer epigenomics [methylation profiling by array] SARC:GSE89041_DNA methylation profiling identifies PTRF/Cavin-1 as a novel tumor suppressor in Ewing sarcoma when co-expressed with Caveolin-1 SARC:GSE109904_450K analysis of pediatric histiocytic sarcomas and anteceding hematologic malignancies SARC:GSE111200_Integrated genetic and epigenetic analysis of myxofibrosarcoma SARC:GSE125645_Genome-wide methylation analysis of osteosarcoma and Ewing sarcoma using Infinium HumanMethylation 450 BeadChip STAD:GSE74233_DNA methylation profiling for BGC823 cells stably transfected with an artificial P16 DNA methyltransferase (P16-Dnmt) STAD:GSE85464_Epigenomic Profiling of Primary Gastric Adenocarcinoma Reveals Super-enhancer Heterogeneity [methylation] STAD:GSE89269_Post-infectious time-series DNA methylation analysis in gastric epithelial cells TGCT:GSE74104_Imprints and DPPA3 are bypassed during pluripotency- and differentiation-coupled methylation reprogramming in testicular germ cell tumors THCA:GSE86961_Integrated data analysis reveals distinct drivers and pathways disrupted by DNA methylation in papillary thyroid carcinomas THCA:GSE97466_Prognostic classifier based on genome-wide DNA methylation profiling in well differentiated thyroid tumors THYM:GSE94769_DNA methylation in thymic epithelial tumors. UVM:GSE130354_BAP1 loss triggers DNA methylomic repatterning in highly aggressive Class 2 uveal melanomas [BeadChip 450K]
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