miRTarBase - #MIRT314051 -
pre-miRNA Information
pre-miRNA hsa-mir-15a   
Genomic Coordinates chr13: 50049119 - 50049201
Synonyms MIRN15A, hsa-mir-15a, miRNA15A, MIR15A
Description Homo sapiens miR-15a stem-loop
Comment Reference .
RNA Secondary Structure
Associated Diseases

Mature miRNA Information
Mature miRNA hsa-miR-15a-5p
Sequence 14| UAGCAGCACAUAAUGGUUUGUG |35
Evidence Experimental
Experiments Cloned
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs1355089203 8 dbSNP
rs753467375 11 dbSNP
rs923737993 12 dbSNP
rs766120172 20 dbSNP
rs1359939022 21 dbSNP
Putative Targets

miRNA Expression profile
Human miRNA Tissue Atlas
miRNAs in Extracellular Vesicles

Circulating MicroRNA Expression Profiling
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol PIK3R1   
Synonyms AGM7, GRB1, IMD36, p85, p85-ALPHA
Description phosphoinositide-3-kinase regulatory subunit 1
Transcript NM_181504   
Other Transcripts NM_181523 , NM_181524   
Expression
Putative miRNA Targets on PIK3R1
3'UTR of PIK3R1
(miRNA target sites are highlighted)
>PIK3R1|NM_181504|3'UTR
   1 AGCGCTTACTCTTTGATCCTTCTCCTGAAGTTCAGCCACCCTGAGGCCTCTGGAAAGCAAAGGGCTCCTCTCCAGTCTGA
  81 TCTGTGAATTGAGCTGCAGAAACGAAGCCATCTTTCTTTGGATGGGACTAGAGCTTTCTTTCACAAAAAAGAAGTAGGGG
 161 AAGACATGCAGCCTAAGGCTGTATGATGACCACACGTTCCTAAGCTGGAGTGCTTATCCCTTCTTTTTCTTTTTTTCTTT
 241 GGTTTAATTTAAAGCCACAACCACATACAACACAAAGAGAAAAAGAAATGCAAAAATCTCTGCGTGCAGGGACAAAGAGG
 321 CCTTTAACCATGGTGCTTGTTAATGCTTTCTGAAGCTTTACCAGCTGAAAGTTGGGACTCTGGAGAGCGGAGGAGAGAGA
 401 GGCAGAAGAACCCTGGCCTGAGAAGGTTTGGTCCAGCCTGGTTTAGCCTGGATGTTGCTGTGCACGGTGGACCCAGACAC
 481 ATCGCACTGTGGATTATTTCATTTTGTAACAAATGAACGATATGTAGCAGAAAGGCACGTCCACTCACAAGGGACGCTTT
 561 GGGAGAATGTCAGTTCATGTATGTTCAGAAGAAATTCTGTCATAGAAAGTGCCAGAAAGTGTTTAACTTGTCAAAAAACA
 641 AAAACCCAGCAACAGAAAAATGGAGTTTGGAAAACAGGACTTAAAATGACATTCAGTATATAAAATATGTACATAATATT
 721 GGATGACTAACTATCAAATAGATGGATTTGTATCAATACCAAATAGCTTCTGTTTTGTTTTGCTGAAGGCTAAATTCACA
 801 GCGCTATGCAATTCTTAATTTTCATTAAGTTGTTATTTCAGTTTTAAATGTACCTTCAGAATAAGCTTCCCCACCCCAGT
 881 TTTTGTTGCTTGAAAATATTGTTGTCCCGGATTTTTGTTAATATTCATTTTTGTTATCCTTTTTTAAAAGTAAATGTACA
 961 GGATGCCAGTAAAAAAAAAAAATGGCTTCAGAATTAAAACTATGAAATATTTTACAGTTTTTCTTGTACAGAGTACTTGG
1041 CTGTTAGCCCAAGGTTAAAAAGTTCATAACAGATTTTTTTTGGACTGTTTTGTTGGGCAGTGCCTGATAAGCTTCAAAGC
1121 TGCTTTATTCAATAAAAAAAAGAAATGAAAAAGATATATGAATATGACAAAGTATTGCTGAGTCCAACAATGTTGTTTTA
1201 AGACTCTTAAAATACGGTACCTGGCAATGTTTATTTCATAAAGAATTGTGAACTTCTTGAATCTAGGGAGGGGGAATGTA
1281 GTGAAGGGATGTATCAAGTGGGGTGGTGGGAGGGGGAGGCAAGGTTATATGCACTTTCTCATGATTTACAGAGAAGTGAA
1361 TAACTGCAAAGTGAAGTTGCTTCTTCTACTTCAGTCTTCTCTCACTTTGATTTGCTAGTTGTTATCAATTAATGACAATT
1441 ACAAACCTACTGTATCTCTAATACAGTGTGACTGGTCAGGTATTTCAGTTCTTAGGAAGGAAGTGCCAAGTTTGTTTTTG
1521 GGTTCCTGGAACAGCGCTCACCTTTGTTTAGAACACTGGTTTAAAGGGATAATCATCTCTGTCACATTAGACTATCCATC
1601 ATGACCAGCAAATACTCATTTTAGGAAAAAAAAAAGCATGATCTGAAAAATACTTTTGGTGGTATGTTGGTTACCCTCCT
1681 AGCTTTCCATTTGGTTTAGAACATAAAGCAAATAGACACAGTCATACTGTCACTGCTCTGGACTGTGTGGAGCTCGCTAA
1761 AGTCATGGTCATTGCAGGAATCCAAGTGGCAGTCCTTCTCATTCATTCTAATCATTGTATGTGCTTCACTACGGGGGGGA
1841 GAAGGAAACGTTAGCATCATGTTTCCCATTTAGGGCAGGAGTGAGAGGTCTCTCTTCCTGATTTAGATATGCAAAAGCTG
1921 GTATGTTCAGTAGGAACTGTACATGTGTTGGGAGGCATAAAGACTAATTAGCAACCATAATATGGTCACTACCCTAATAG
2001 ACTAAATGAAATCTTGCAATTTCAAATTACTCTTTCTCCATATTAGATTTACCCACAGCTATATTTCTGTTTAAGTACTA
2081 GGGTGAGGGTTTTCTGTTACTTTGTTTTTTAATGTTGTTCCTTTTGAAAGAATCAGTCTTGCAGCTGAGTGAAAAATCTG
2161 TGGAATGTATTATTTGTCCTCTTTACATGAAACTACTCATACTTAAGCAAAAGTCAGTCTTATAGCAAGACTGTTAGCCC
2241 TCAAACTTGACTCTACTGATCTGACCATTTCCCTCTCATCGCCAGACAACTGACGATTTCCCTGGTTTTAGTCTGCGTCT
2321 CTGCTTTAAAGTTATTGTGATATCCTTCTAGATCATACACAAGTCTAACAGTTAATTAGTTAACAGTTTTTAAACTAGGT
2401 TTGTGGGTATTTTTTTGGTAGCACATGTATGCTATTACATACAAATTTTTATTTCTAAAATATAAGATCTGAGATTGAAT
2481 ATTTTCATTAAAAGCTACAGTTTTGTGAATCTTTGTGCTTCAACATTCTTTGCAAGATGATACGGTATTTAGGCATTTGC
2561 CTTATTTTTGCATCTCACAAACATAAGTGCAATAGATCTTTTCATTGAACAGCAAAGTAGGATTCATCATTCCATATGAC
2641 TTGAGTTACACCAGACCTGTTCTGCCCAATGCCTTTTTGATTACAGTGTAGCTTGCCCACCGCATTTGTCGTTTTAGATA
2721 CTTTGCTAGCCGGCCACTTTGGATTTCATCAGACAGTCCTAACAATATTGTCTGAACGGCTGAATATGAATAGATACAGC
2801 AGAGGCACTCCTGATATATGATTTTTATCCATGCGTCAGTTTTTCCCACCCAGTGTAGCATCCTAAAGATAAAGCCAGAA
2881 GCTAAGCTGCAGTGAGGCTGTGATTGGGCGTAGAAGTGGGAGCATTGGGACCTCACATTACACACACGAGAGATCATAAC
2961 CATGTGAAAAGGCAAAAAGCATGTGTTTGCAACATCTGATAACTTCATGGCCTTTGATAAATGTATATATGTATATGTGC
3041 ATGGACTGTGTTTCCAGTACACCTTTCAGCCAAAACAGATCCACAGTAGTTGTTGAGTTCAAGTACATAAAGTACATAAC
3121 AAGCGAACGTCTAGTACAATTCTTACTTATGTGTATGGGATTTTTCCCTTTGAGGTTGCTTTGTTTTGTCTTACAAAGGT
3201 GAAAATTGTTTGTAAGTGAAGTGAGAAGTTCATATTTCTTTGGCTTTTTTGTGTTTTTAAAAGTTACTCCTTTTAGGGAG
3281 CTGGTCTGATGACTTGCTTAGCTTGGAAATCCTTGTTTTCAGTGTGTCGAGTCAAAATGTGTTTATGTGAGCTGTCACTG
3361 TGGGGAACCAATTGCTTTGTCATATAGCTGGTTATGAACTAGTAACATGTTTGGGAAGTCCTACTGATGTTCCTTTGGAA
3441 GAAAAAATCTGCTGGTTTTAACAACTGTGCTTTTGCTATGTATGGTATCCAAGTTAGTTGAAACGCAGACACTGAGATCT
3521 GTTTGAGTTTAGGGTCATTTTTAGAAAGGGGCAGTTTAAAGCACAATGTCTCACATGGGACAAAGTTCCAAAATGCCAAA
3601 TTCTTATTTTTTAAAAAGCTAGTTCTATAAAATACTGGTATTATGGGTGGGGAGGAAATAGAATTGAGTCAATTGGAAAG
3681 ACTATCCAACTTAACATGAAACTTGTCACCATGAGATAGCATTAGCTGCCCAGGATGCTGCTATATATATATATATATAT
3761 ATATATGTGTGTGTGTGTGTGTGTGTGTGTGTATATATATATATATATATATATATATATATATATATATATGTGTGTGT
3841 ATATATATATATATGTGTATATATATATGTATATACATATATGTATATATATGCACATATATATATGTATTTAAAAAAAT
3921 CAAAACAAAAAAAAACTCATTTATACCTGTGTATTTTTTAAAGCTACAATCTGTTCAATGTTTTTAAAAATCTGTTTATA
4001 TGACATTGTTAAAATAAAGTTGGTCTTTTGACGAGAGGGAGGATGTCACGGTCAGTTGTAACTTTGCCTTCACAAGGCAA
4081 CTGGGGTGGGGGGTGGGGGTAGTGTGCCTCCTTGACATTTCGTTCAAGTTATAGATTCAATGGAGCTATGTCTTGTTTTA
4161 AGTTGCTTTAATGCATTGTATTAGATCTTCAAACAGAATAAAGGTTGTTTTGAAACTGAAAAAAAAAAAAAAAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions (Predicted by miRanda)
IDDuplex structurePositionScoreMFE
1
miRNA  3' gugUUUGGUAAU--AC-------ACGACGAu 5'
             | | |||||  ||       ||||||| 
Target 5' gagATAGCATTAGCTGCCCAGGATGCTGCTa 3'
3713 - 3743 149.00 -14.60
2
miRNA  3' guGUUUGGUAAUACACGACGAu 5'
            ||  ||| | | ||:|||| 
Target 5' ccCACCCCAGTTTTTGTTGCTt 3'
870 - 891 144.00 -11.70
3
miRNA  3' guGUUUGGU--AAU---AC--ACGACGAu 5'
            ||: |::  |||   ||  ||:|||| 
Target 5' tcCAGCCTGGTTTAGCCTGGATGTTGCTg 3'
432 - 460 132.00 -15.20
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
211905 4 ClinVar
COSN26989068 5 COSMIC
COSN30109014 9 COSMIC
COSN31500706 16 COSMIC
COSN30462106 24 COSMIC
COSN31527701 69 COSMIC
COSN30511082 71 COSMIC
COSN30116778 80 COSMIC
COSN31500752 83 COSMIC
COSN31576677 83 COSMIC
COSN31598279 109 COSMIC
COSN30512260 191 COSMIC
COSN6925744 196 COSMIC
COSN9455544 299 COSMIC
COSN8492991 322 COSMIC
COSN30540615 346 COSMIC
COSN1318460 392 COSMIC
COSN14754828 482 COSMIC
COSN31590389 519 COSMIC
COSN17037391 592 COSMIC
COSN5162081 616 COSMIC
COSN31526923 679 COSMIC
COSN31588618 803 COSMIC
COSN31770992 824 COSMIC
COSN17183309 864 COSMIC
COSN31549918 865 COSMIC
COSN15650337 983 COSMIC
COSN15651849 983 COSMIC
COSN17075906 1216 COSMIC
COSN26671550 1312 COSMIC
COSN2115645 1315 COSMIC
COSN27762839 1386 COSMIC
COSN19166985 1430 COSMIC
COSN6586825 1609 COSMIC
COSN23751128 1636 COSMIC
COSN2115646 1659 COSMIC
COSN20101344 1749 COSMIC
COSN15660051 1880 COSMIC
COSN31770995 2060 COSMIC
COSN9455546 2163 COSMIC
COSN22853376 2464 COSMIC
COSN9955978 2473 COSMIC
COSN22905887 3137 COSMIC
COSN5078528 3172 COSMIC
COSN22818627 3211 COSMIC
COSN31543653 3340 COSMIC
COSN31770996 3393 COSMIC
COSN31770998 3463 COSMIC
COSN31770999 3500 COSMIC
COSN26639971 3596 COSMIC
COSN26205774 3607 COSMIC
COSN15660243 3766 COSMIC
COSN29002533 3767 COSMIC
COSN14731049 3768 COSMIC
COSN28680404 3770 COSMIC
COSN27621565 3786 COSMIC
COSN27905459 3802 COSMIC
COSN17437524 3834 COSMIC
COSN16896002 3840 COSMIC
COSN8228585 3842 COSMIC
COSN24301139 3854 COSMIC
COSN18804948 3856 COSMIC
COSN7951492 3860 COSMIC
COSN23035429 3864 COSMIC
COSN31587946 3936 COSMIC
COSN28777656 4096 COSMIC
COSN31545676 4123 COSMIC
COSN29939052 4152 COSMIC
rs3756668 2660 GWAS
rs9623 3893 GWAS
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs1306107123 2 dbSNP
rs41268435 4 dbSNP
rs201345202 5 dbSNP
rs749882781 12 dbSNP
rs914938762 15 dbSNP
rs946942974 16 dbSNP
rs762308734 17 dbSNP
rs755649316 18 dbSNP
rs1488616073 19 dbSNP
rs779745840 21 dbSNP
rs1245967768 22 dbSNP
rs748945635 25 dbSNP
rs1282414252 26 dbSNP
rs1189204026 31 dbSNP
rs755307827 33 dbSNP
rs557330835 34 dbSNP
rs569155590 37 dbSNP
rs748521959 40 dbSNP
rs1467735159 41 dbSNP
rs772496877 42 dbSNP
rs896671080 44 dbSNP
rs939479609 62 dbSNP
rs1232034024 80 dbSNP
rs767441889 84 dbSNP
rs1300777719 87 dbSNP
rs1012436205 98 dbSNP
rs1056645451 99 dbSNP
rs1044510462 103 dbSNP
rs895196565 104 dbSNP
rs536280427 105 dbSNP
rs905612726 106 dbSNP
rs1005220007 107 dbSNP
rs1043425 112 dbSNP
rs1453129269 113 dbSNP
rs1043426 117 dbSNP
rs1027600799 118 dbSNP
rs1016643906 121 dbSNP
rs887814722 122 dbSNP
rs1005425464 134 dbSNP
rs1338276690 138 dbSNP
rs1213252300 140 dbSNP
rs1216291186 143 dbSNP
rs1295987410 145 dbSNP
rs1311436378 146 dbSNP
rs1209659494 148 dbSNP
rs1208747846 153 dbSNP
rs961269822 155 dbSNP
rs1015428064 167 dbSNP
rs961285330 168 dbSNP
rs1296203522 182 dbSNP
rs1213835571 184 dbSNP
rs994512962 196 dbSNP
rs1294857239 197 dbSNP
rs1415040963 198 dbSNP
rs1029597660 206 dbSNP
rs148128862 211 dbSNP
rs1463063899 213 dbSNP
rs750709187 214 dbSNP
rs1171703324 215 dbSNP
rs1409796639 220 dbSNP
rs1485162295 221 dbSNP
rs1421976044 226 dbSNP
rs985320427 236 dbSNP
rs1475667961 237 dbSNP
rs1256997923 248 dbSNP
rs953915516 249 dbSNP
rs1185985710 258 dbSNP
rs1481651509 261 dbSNP
rs1251868011 263 dbSNP
rs1203768793 264 dbSNP
rs911268424 266 dbSNP
rs968144937 269 dbSNP
rs1188852224 270 dbSNP
rs979396256 272 dbSNP
rs763133673 288 dbSNP
rs1291039930 290 dbSNP
rs1433037535 297 dbSNP
rs1392671758 298 dbSNP
rs56392116 305 dbSNP
rs1442152316 307 dbSNP
rs3729982 312 dbSNP
rs946325471 314 dbSNP
rs977759000 315 dbSNP
rs1417483622 316 dbSNP
rs1296999890 326 dbSNP
rs924158490 333 dbSNP
rs939636859 347 dbSNP
rs1421064025 348 dbSNP
rs3729983 354 dbSNP
rs1251363488 367 dbSNP
rs1057014318 373 dbSNP
rs895346631 389 dbSNP
rs948129333 390 dbSNP
rs577064455 393 dbSNP
rs1333847897 395 dbSNP
rs1045274576 396 dbSNP
rs905603044 397 dbSNP
rs781253751 400 dbSNP
rs1289429916 403 dbSNP
rs1366632643 404 dbSNP
rs1375418353 404 dbSNP
rs1328504400 409 dbSNP
rs1038021330 413 dbSNP
rs887867144 432 dbSNP
rs993860503 437 dbSNP
rs1305374179 441 dbSNP
rs544385608 444 dbSNP
rs1014891481 446 dbSNP
rs1350261777 457 dbSNP
rs1235336929 458 dbSNP
rs1364532984 461 dbSNP
rs752560994 463 dbSNP
rs1029958401 464 dbSNP
rs955322887 466 dbSNP
rs1007135409 467 dbSNP
rs1396862348 468 dbSNP
rs1445410665 473 dbSNP
rs1467943545 474 dbSNP
rs1265034653 476 dbSNP
rs1018100743 477 dbSNP
rs1218554979 481 dbSNP
rs116483958 482 dbSNP
rs753924505 484 dbSNP
rs777115457 485 dbSNP
rs1306322693 489 dbSNP
rs998137660 491 dbSNP
rs1299647300 497 dbSNP
rs764804986 497 dbSNP
rs1031064318 498 dbSNP
rs1386018896 511 dbSNP
rs1417977654 511 dbSNP
rs1192092910 512 dbSNP
rs956893569 521 dbSNP
rs1255324079 524 dbSNP
rs1454425212 533 dbSNP
rs1453742858 536 dbSNP
rs1029901085 539 dbSNP
rs748978875 540 dbSNP
rs763007192 546 dbSNP
rs1405142337 548 dbSNP
rs1260668323 553 dbSNP
rs953941477 556 dbSNP
rs530303802 557 dbSNP
rs3729984 566 dbSNP
rs1438651216 577 dbSNP
rs1327621158 578 dbSNP
rs1371524173 580 dbSNP
rs967800971 584 dbSNP
rs1209445403 586 dbSNP
rs977727850 592 dbSNP
rs1441900790 601 dbSNP
rs778901961 603 dbSNP
rs1254753734 604 dbSNP
rs909401106 616 dbSNP
rs923623577 619 dbSNP
rs942191668 620 dbSNP
rs1357550071 635 dbSNP
rs1313566551 653 dbSNP
rs1434182216 655 dbSNP
rs780579580 663 dbSNP
rs1169558204 666 dbSNP
rs1462342712 675 dbSNP
rs896913070 680 dbSNP
rs992458703 681 dbSNP
rs1475985168 683 dbSNP
rs1333125602 687 dbSNP
rs1050823026 692 dbSNP
rs1186674120 699 dbSNP
rs916734598 701 dbSNP
rs1321603294 706 dbSNP
rs1340612611 709 dbSNP
rs1217116623 712 dbSNP
rs1337315180 726 dbSNP
rs1006840521 736 dbSNP
rs1414297941 736 dbSNP
rs1212414138 740 dbSNP
rs1275410549 746 dbSNP
rs948209686 753 dbSNP
rs1018045194 769 dbSNP
rs553613120 772 dbSNP
rs1391918822 775 dbSNP
rs188971814 803 dbSNP
rs374741535 804 dbSNP
rs1230748333 807 dbSNP
rs1163717090 810 dbSNP
rs1471580368 817 dbSNP
rs956850478 818 dbSNP
rs527788338 829 dbSNP
rs552437087 832 dbSNP
rs747311095 833 dbSNP
rs531173239 834 dbSNP
rs1025002879 836 dbSNP
rs1470092365 840 dbSNP
rs1274085376 845 dbSNP
rs940797456 852 dbSNP
rs1036304018 854 dbSNP
rs1354452205 861 dbSNP
rs980994295 868 dbSNP
rs1239852854 874 dbSNP
rs56235611 875 dbSNP
rs1329198180 877 dbSNP
rs1442879318 879 dbSNP
rs1394979098 892 dbSNP
rs1043526 896 dbSNP
rs1403254528 903 dbSNP
rs1409624336 907 dbSNP
rs373103355 909 dbSNP
rs1158713948 910 dbSNP
rs1469173663 911 dbSNP
rs1464849898 913 dbSNP
rs1326622732 914 dbSNP
rs1050986669 916 dbSNP
rs1177281170 918 dbSNP
rs879041438 934 dbSNP
rs1334160571 939 dbSNP
rs1444680486 951 dbSNP
rs889709597 953 dbSNP
rs1450154859 955 dbSNP
rs1286591927 957 dbSNP
rs918330287 958 dbSNP
rs1307121426 961 dbSNP
rs1231982495 967 dbSNP
rs1275670230 968 dbSNP
rs1336109275 970 dbSNP
rs1371564314 971 dbSNP
rs36055833 971 dbSNP
rs372829542 971 dbSNP
rs386404033 971 dbSNP
rs386404034 971 dbSNP
rs540447315 971 dbSNP
rs878995919 971 dbSNP
rs1198344167 981 dbSNP
rs1399659739 983 dbSNP
rs1271350683 984 dbSNP
rs869086686 984 dbSNP
rs1174920629 986 dbSNP
rs529021966 1001 dbSNP
rs762206333 1003 dbSNP
rs890823156 1004 dbSNP
rs1473978716 1008 dbSNP
rs1477231381 1014 dbSNP
rs1022153685 1016 dbSNP
rs138547786 1019 dbSNP
rs903789270 1028 dbSNP
rs1000616165 1044 dbSNP
rs1213028265 1047 dbSNP
rs55922411 1048 dbSNP
rs73771048 1049 dbSNP
rs960444936 1051 dbSNP
rs1025496712 1054 dbSNP
rs1270513365 1057 dbSNP
rs530462337 1067 dbSNP
rs969385622 1069 dbSNP
rs1411846737 1071 dbSNP
rs1002211273 1074 dbSNP
rs1374918213 1075 dbSNP
rs1412936238 1086 dbSNP
rs1175935903 1093 dbSNP
rs992238703 1108 dbSNP
rs1413224876 1130 dbSNP
rs1295211858 1133 dbSNP
rs1016483827 1134 dbSNP
rs200582275 1134 dbSNP
rs566394784 1135 dbSNP
rs1190227460 1140 dbSNP
rs1491228227 1141 dbSNP
rs916807458 1141 dbSNP
rs1491172619 1142 dbSNP
rs1268755386 1148 dbSNP
rs1207979742 1150 dbSNP
rs778032037 1151 dbSNP
rs1341968587 1152 dbSNP
rs1309133591 1154 dbSNP
rs1214794855 1156 dbSNP
rs1217720285 1158 dbSNP
rs1315752532 1159 dbSNP
rs1294718990 1163 dbSNP
rs1414910427 1166 dbSNP
rs1377849988 1169 dbSNP
rs1300513113 1170 dbSNP
rs1446475087 1170 dbSNP
rs1356716735 1173 dbSNP
rs1276906396 1177 dbSNP
rs533775451 1188 dbSNP
rs1421824835 1191 dbSNP
rs1484493677 1191 dbSNP
rs919463734 1191 dbSNP
rs1212344652 1204 dbSNP
rs909409880 1206 dbSNP
rs1180133220 1207 dbSNP
rs1481579202 1208 dbSNP
rs1233383635 1209 dbSNP
rs951189313 1213 dbSNP
rs940767752 1216 dbSNP
rs141513458 1217 dbSNP
rs1190997429 1223 dbSNP
rs923352520 1229 dbSNP
rs1320675977 1231 dbSNP
rs1309956489 1238 dbSNP
rs756251450 1238 dbSNP
rs148102971 1240 dbSNP
rs763188829 1242 dbSNP
rs1332608685 1243 dbSNP
rs1446566531 1251 dbSNP
rs1328291506 1253 dbSNP
rs1398601659 1253 dbSNP
rs1458616532 1260 dbSNP
rs1171784153 1266 dbSNP
rs1349450529 1270 dbSNP
rs1394639227 1271 dbSNP
rs1162852115 1275 dbSNP
rs1433113561 1276 dbSNP
rs1314784440 1278 dbSNP
rs1050869978 1279 dbSNP
rs1177969356 1281 dbSNP
rs1376183298 1287 dbSNP
rs889684330 1288 dbSNP
rs1006833303 1289 dbSNP
rs1214012827 1300 dbSNP
rs2544847 1303 dbSNP
rs942337017 1307 dbSNP
rs1039349078 1308 dbSNP
rs1487990680 1308 dbSNP
rs1043564675 1310 dbSNP
rs925193004 1311 dbSNP
rs1316957092 1312 dbSNP
rs903721119 1313 dbSNP
rs1328715053 1314 dbSNP
rs1228539225 1316 dbSNP
rs1052680050 1328 dbSNP
rs999274335 1329 dbSNP
rs1387705897 1332 dbSNP
rs1303159320 1334 dbSNP
rs576508749 1336 dbSNP
rs896234424 1338 dbSNP
rs1013224899 1341 dbSNP
rs1361272413 1342 dbSNP
rs1158062880 1343 dbSNP
rs1023740807 1348 dbSNP
rs766517372 1349 dbSNP
rs905275531 1351 dbSNP
rs1432361203 1356 dbSNP
rs1264880593 1363 dbSNP
rs1187935119 1372 dbSNP
rs1203306359 1380 dbSNP
rs985037473 1380 dbSNP
rs1284707728 1382 dbSNP
rs1213740204 1383 dbSNP
rs1002201232 1389 dbSNP
rs1283074609 1403 dbSNP
rs1234485624 1407 dbSNP
rs538072200 1410 dbSNP
rs1447523349 1416 dbSNP
rs1197836408 1418 dbSNP
rs1384147532 1420 dbSNP
rs963611461 1426 dbSNP
rs1398211543 1427 dbSNP
rs1377250192 1432 dbSNP
rs1250941917 1435 dbSNP
rs1173061119 1442 dbSNP
rs1465451571 1447 dbSNP
rs1016379514 1448 dbSNP
rs1175812107 1451 dbSNP
rs1172197887 1452 dbSNP
rs962145402 1465 dbSNP
rs1477945910 1466 dbSNP
rs1262018997 1467 dbSNP
rs1190952251 1469 dbSNP
rs972649767 1480 dbSNP
rs1395750837 1490 dbSNP
rs1027003879 1494 dbSNP
rs1201550337 1496 dbSNP
rs954871946 1500 dbSNP
rs1254629199 1507 dbSNP
rs923352984 1519 dbSNP
rs988053327 1532 dbSNP
rs1216916435 1534 dbSNP
rs912275337 1536 dbSNP
rs556305771 1537 dbSNP
rs1395398000 1546 dbSNP
rs868636444 1552 dbSNP
rs574799532 1556 dbSNP
rs933416649 1560 dbSNP
rs79515688 1568 dbSNP
rs1437828843 1569 dbSNP
rs1465937762 1570 dbSNP
rs924972738 1571 dbSNP
rs1168060112 1575 dbSNP
rs1475954634 1576 dbSNP
rs1368551399 1577 dbSNP
rs1186139873 1584 dbSNP
rs759380517 1587 dbSNP
rs1254668229 1590 dbSNP
rs1200970173 1594 dbSNP
rs1383300211 1596 dbSNP
rs1458469193 1597 dbSNP
rs1325616690 1599 dbSNP
rs1257782663 1603 dbSNP
rs527912530 1604 dbSNP
rs1358667281 1617 dbSNP
rs755521787 1619 dbSNP
rs913813702 1625 dbSNP
rs1328971146 1626 dbSNP
rs1338694109 1626 dbSNP
rs373752070 1626 dbSNP
rs949206071 1626 dbSNP
rs938107826 1636 dbSNP
rs1390991848 1648 dbSNP
rs942585339 1651 dbSNP
rs1471510108 1654 dbSNP
rs1367275876 1656 dbSNP
rs1334805035 1663 dbSNP
rs1237970832 1664 dbSNP
rs899143586 1670 dbSNP
rs1453609005 1672 dbSNP
rs1290848791 1673 dbSNP
rs1209372110 1679 dbSNP
rs1261993764 1684 dbSNP
rs1288208851 1692 dbSNP
rs1240802215 1702 dbSNP
rs1375969541 1706 dbSNP
rs1306888140 1709 dbSNP
rs1351256877 1710 dbSNP
rs1331377238 1711 dbSNP
rs1322432995 1713 dbSNP
rs1403201568 1717 dbSNP
rs1386526391 1719 dbSNP
rs752783857 1726 dbSNP
rs993509496 1740 dbSNP
rs70937069 1742 dbSNP
rs58984754 1744 dbSNP
rs796628175 1744 dbSNP
rs1177227508 1748 dbSNP
rs890706668 1753 dbSNP
rs1009065948 1754 dbSNP
rs1043704607 1756 dbSNP
rs903776769 1757 dbSNP
rs1194034574 1759 dbSNP
rs772496364 1762 dbSNP
rs1352965012 1763 dbSNP
rs560836558 1766 dbSNP
rs1052714757 1769 dbSNP
rs375121129 1771 dbSNP
rs1220777953 1776 dbSNP
rs1345489695 1779 dbSNP
rs1253801819 1791 dbSNP
rs1273976418 1792 dbSNP
rs1433869264 1794 dbSNP
rs896214194 1797 dbSNP
rs1341918605 1801 dbSNP
rs1418745434 1808 dbSNP
rs146378195 1811 dbSNP
rs963744915 1814 dbSNP
rs570960711 1820 dbSNP
rs1426343992 1832 dbSNP
rs111804580 1833 dbSNP
rs1172288138 1833 dbSNP
rs544233113 1833 dbSNP
rs752718808 1833 dbSNP
rs202050841 1834 dbSNP
rs577560753 1835 dbSNP
rs904903444 1835 dbSNP
rs755964553 1836 dbSNP
rs1016435148 1838 dbSNP
rs929284235 1838 dbSNP
rs1304032623 1840 dbSNP
rs778016994 1841 dbSNP
rs962283263 1850 dbSNP
rs369524767 1851 dbSNP
rs560308197 1860 dbSNP
rs972234726 1860 dbSNP
rs1009585578 1861 dbSNP
rs1395254213 1868 dbSNP
rs777363637 1874 dbSNP
rs1017829996 1879 dbSNP
rs1171693283 1880 dbSNP
rs900649607 1883 dbSNP
rs749479368 1887 dbSNP
rs1000327442 1889 dbSNP
rs1183607931 1892 dbSNP
rs572388641 1893 dbSNP
rs1335884149 1896 dbSNP
rs1473124830 1901 dbSNP
rs1236819160 1904 dbSNP
rs1032010196 1906 dbSNP
rs1232588362 1907 dbSNP
rs1030937090 1910 dbSNP
rs1458905628 1914 dbSNP
rs747898185 1918 dbSNP
rs954802402 1930 dbSNP
rs986652179 1931 dbSNP
rs1258428339 1938 dbSNP
rs957820802 1940 dbSNP
rs987815542 1949 dbSNP
rs546159566 1952 dbSNP
rs1314332675 1956 dbSNP
rs146222065 1974 dbSNP
rs1380585562 1977 dbSNP
rs1336878530 1978 dbSNP
rs184402750 1980 dbSNP
rs947332473 1985 dbSNP
rs1402934276 1986 dbSNP
rs1332393016 1991 dbSNP
rs34570857 1992 dbSNP
rs1465304943 1995 dbSNP
rs1352977466 2001 dbSNP
rs1167076906 2003 dbSNP
rs79397497 2003 dbSNP
rs1413036765 2009 dbSNP
rs1180080765 2029 dbSNP
rs556568437 2031 dbSNP
rs925163955 2041 dbSNP
rs1238579610 2044 dbSNP
rs1177768106 2045 dbSNP
rs1456212392 2046 dbSNP
rs935256395 2047 dbSNP
rs779190783 2053 dbSNP
rs926540181 2062 dbSNP
rs1221707185 2064 dbSNP
rs1320626849 2068 dbSNP
rs562628200 2071 dbSNP
rs1052257555 2073 dbSNP
rs578137604 2079 dbSNP
rs973238401 2080 dbSNP
rs17253369 2081 dbSNP
rs566743944 2082 dbSNP
rs1295475194 2096 dbSNP
rs1047704208 2097 dbSNP
rs1416251807 2099 dbSNP
rs1349398029 2100 dbSNP
rs1476484811 2101 dbSNP
rs397832739 2105 dbSNP
rs1161692381 2106 dbSNP
rs59812921 2111 dbSNP
rs1421451159 2112 dbSNP
rs772523534 2113 dbSNP
rs1354356144 2120 dbSNP
rs1417046942 2140 dbSNP
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rs1005813247 2155 dbSNP
rs1191433418 2161 dbSNP
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rs374269928 2173 dbSNP
rs960818940 2181 dbSNP
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rs200255602 3927 dbSNP
rs1323354637 3928 dbSNP
rs1318953746 3933 dbSNP
rs995162535 3936 dbSNP
rs1047603284 3937 dbSNP
rs758070181 3938 dbSNP
rs1003286891 3939 dbSNP
rs564067836 3939 dbSNP
rs1285150097 3940 dbSNP
rs1387208280 3947 dbSNP
rs1339008396 3948 dbSNP
rs1203063504 3951 dbSNP
rs779104278 3952 dbSNP
rs1483657668 3972 dbSNP
rs750813629 3974 dbSNP
rs1432541417 3975 dbSNP
rs1388893113 3998 dbSNP
rs1319417479 4001 dbSNP
rs1455220176 4003 dbSNP
rs1187948672 4005 dbSNP
rs1430713722 4005 dbSNP
rs958975344 4008 dbSNP
rs991642639 4010 dbSNP
rs1425852880 4012 dbSNP
rs1165942941 4017 dbSNP
rs1372091768 4019 dbSNP
rs541063778 4021 dbSNP
rs1018812714 4033 dbSNP
rs1169902844 4033 dbSNP
rs191301115 4036 dbSNP
rs145705543 4037 dbSNP
rs1414079634 4043 dbSNP
rs964442490 4046 dbSNP
rs1233949475 4050 dbSNP
rs531471181 4051 dbSNP
rs1298972674 4054 dbSNP
rs1216135498 4055 dbSNP
rs920115339 4058 dbSNP
rs953009462 4063 dbSNP
rs984528343 4063 dbSNP
rs1032673585 4070 dbSNP
rs1294625276 4076 dbSNP
rs1302915609 4083 dbSNP
rs1326046613 4083 dbSNP
rs1359076169 4088 dbSNP
rs370076927 4089 dbSNP
rs1188175703 4096 dbSNP
rs1391099129 4096 dbSNP
rs940330472 4099 dbSNP
rs1258431412 4100 dbSNP
rs766577341 4104 dbSNP
rs1482940624 4105 dbSNP
rs561683350 4123 dbSNP
rs75047256 4131 dbSNP
rs1296586019 4132 dbSNP
rs1342625933 4132 dbSNP
rs1050201672 4133 dbSNP
rs1254716007 4139 dbSNP
rs547511877 4141 dbSNP
rs1312875370 4146 dbSNP
rs1182766119 4153 dbSNP
rs1394967089 4153 dbSNP
rs1261523923 4165 dbSNP
rs1376290672 4167 dbSNP
rs927495921 4169 dbSNP
rs1301608463 4175 dbSNP
rs1447261778 4177 dbSNP
rs1190175620 4179 dbSNP
rs1432101213 4187 dbSNP
rs1390408151 4204 dbSNP
rs866762225 4214 dbSNP
rs1173370596 4218 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
     
Conditions HEK293
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... PAR-CLIP data was present in GSM714645. RNA binding protein: AGO2. Condition:completeT1, repB PAR-CLIP data was present in GSM714644. RNA binding protein: AGO2. Condition:completeT1, repA HITS-CLIP data was present in GSM714643. RNA binding protein: AGO2. Condition:completeT1, repB HITS-CLIP data was present in GSM714642. RNA binding protein: AGO2. Condition:completeT1, repA ...

- Kishore S; Jaskiewicz L; Burger L; Hausser et al., 2011, Nature methods.

Article - Kishore S; Jaskiewicz L; Burger L; Hausser et al.
- Nature methods, 2011
Cross-linking and immunoprecipitation (CLIP) is increasingly used to map transcriptome-wide binding sites of RNA-binding proteins. We developed a method for CLIP data analysis, and applied it to compare CLIP with photoactivatable ribonucleoside-enhanced CLIP (PAR-CLIP) and to uncover how differences in cross-linking and ribonuclease digestion affect the identified sites. We found only small differences in accuracies of these methods in identifying binding sites of HuR, which binds low-complexity sequences, and Argonaute 2, which has a complex binding specificity. We found that cross-link-induced mutations led to single-nucleotide resolution for both PAR-CLIP and CLIP. Our results confirm the expectation from original CLIP publications that RNA-binding proteins do not protect their binding sites sufficiently under the denaturing conditions used during the CLIP procedure, and we show that extensive digestion with sequence-specific RNases strongly biases the recovered binding sites. This bias can be substantially reduced by milder nuclease digestion conditions.
LinkOut: [PMID: 21572407]
Experimental Support 2 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
     
Conditions Hela
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... HITS-CLIP data was present in GSM1048188. RNA binding protein: AGO2. Condition:Hela_AGO2_CLIP_ptb_knockdown ...

- Xue Y; Ouyang K; Huang J; Zhou Y; Ouyang H; et al., 2013, Cell.

Article - Xue Y; Ouyang K; Huang J; Zhou Y; Ouyang H; et al.
- Cell, 2013
The induction of pluripotency or trans-differentiation of one cell type to another can be accomplished with cell-lineage-specific transcription factors. Here, we report that repression of a single RNA binding polypyrimidine-tract-binding (PTB) protein, which occurs during normal brain development via the action of miR-124, is sufficient to induce trans-differentiation of fibroblasts into functional neurons. Besides its traditional role in regulated splicing, we show that PTB has a previously undocumented function in the regulation of microRNA functions, suppressing or enhancing microRNA targeting by competitive binding on target mRNA or altering local RNA secondary structure. A key event during neuronal induction is the relief of PTB-mediated blockage of microRNA action on multiple components of the REST complex, thereby derepressing a large array of neuronal genes, including miR-124 and multiple neuronal-specific transcription factors, in nonneuronal cells. This converts a negative feedback loop to a positive one to elicit cellular reprogramming to the neuronal lineage.
LinkOut: [PMID: 23313552]
Experimental Support 3 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions HEK293
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... PAR-CLIP data was present in GSM1065670. RNA binding protein: AGO2. Condition:4-thiouridine, 3_ML_LG PAR-CLIP data was present in GSM1065669. RNA binding protein: AGO1. Condition:4-thiouridine, ML_MM_8 PAR-CLIP data was present in GSM1065667. RNA binding protein: AGO1. Condition:4-thiouridine, ML_MM_6 ...

- Memczak S; Jens M; Elefsinioti A; Torti F; et al., 2013, Nature.

Article - Memczak S; Jens M; Elefsinioti A; Torti F; et al.
- Nature, 2013
Circular RNAs (circRNAs) in animals are an enigmatic class of RNA with unknown function. To explore circRNAs systematically, we sequenced and computationally analysed human, mouse and nematode RNA. We detected thousands of well-expressed, stable circRNAs, often showing tissue/developmental-stage-specific expression. Sequence analysis indicated important regulatory functions for circRNAs. We found that a human circRNA, antisense to the cerebellar degeneration-related protein 1 transcript (CDR1as), is densely bound by microRNA (miRNA) effector complexes and harbours 63 conserved binding sites for the ancient miRNA miR-7. Further analyses indicated that CDR1as functions to bind miR-7 in neuronal tissues. Human CDR1as expression in zebrafish impaired midbrain development, similar to knocking down miR-7, suggesting that CDR1as is a miRNA antagonist with a miRNA-binding capacity ten times higher than any other known transcript. Together, our data provide evidence that circRNAs form a large class of post-transcriptional regulators. Numerous circRNAs form by head-to-tail splicing of exons, suggesting previously unrecognized regulatory potential of coding sequences.
LinkOut: [PMID: 23446348]
Experimental Support 4 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
     
Conditions HEK293S
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... HITS-CLIP data was present in GSM1084078. RNA binding protein: AGO2. Condition:CLIP_nohippuristanol_rep2_AbnovaAb HITS-CLIP data was present in GSM1084067. RNA binding protein: AGO2. Condition:CLIP_emetine_SantaCruzAb ...

- Karginov FV; Hannon GJ, 2013, Genes & development.

Article - Karginov FV; Hannon GJ
- Genes & development, 2013
When adapting to environmental stress, cells attenuate and reprogram their translational output. In part, these altered translation profiles are established through changes in the interactions between RNA-binding proteins and mRNAs. The Argonaute 2 (Ago2)/microRNA (miRNA) machinery has been shown to participate in stress-induced translational up-regulation of a particular mRNA, CAT-1; however, a detailed, transcriptome-wide understanding of the involvement of Ago2 in the process has been lacking. Here, we profiled the overall changes in Ago2-mRNA interactions upon arsenite stress by cross-linking immunoprecipitation (CLIP) followed by high-throughput sequencing (CLIP-seq). Ago2 displayed a significant remodeling of its transcript occupancy, with the majority of 3' untranslated region (UTR) and coding sequence (CDS) sites exhibiting stronger interaction. Interestingly, target sites that were destined for release from Ago2 upon stress were depleted in miRNA complementarity signatures, suggesting an alternative mode of interaction. To compare the changes in Ago2-binding patterns across transcripts with changes in their translational states, we measured mRNA profiles on ribosome/polysome gradients by RNA sequencing (RNA-seq). Increased Ago2 occupancy correlated with stronger repression of translation for those mRNAs, as evidenced by a shift toward lighter gradient fractions upon stress, while release of Ago2 was associated with the limited number of transcripts that remained translated. Taken together, these data point to a role for Ago2 and the mammalian miRNAs in mediating the translational component of the stress response.
LinkOut: [PMID: 23824327]
CLIP-seq Support 1 for dataset GSM714642
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293 / completeT1, repA
Location of target site ENST00000521381.1 | 3UTR | GCUAUAUAUAUAUAUAUAUA
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 21572407 / GSE28865
CLIP-seq Viewer Link
CLIP-seq Support 2 for dataset GSM714643
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293 / completeT1, repB
Location of target site ENST00000521381.1 | 3UTR | AUGCUGCUAUAUAUAUAUAUAUAUAUAUAUAUGU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 21572407 / GSE28865
CLIP-seq Viewer Link
CLIP-seq Support 3 for dataset GSM1048188
Method / RBP HITS-CLIP / AGO2
Cell line / Condition Hela / Hela_AGO2_CLIP_ptb_knockdown
Location of target site ENST00000521381.1 | 3UTR | UGCUAUAUAUAUAUAUAUAUAUAUAUAUGUGUGUGUGUGUGUGUGUGUGUG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23313552 / GSE42701
CLIP-seq Viewer Link
CLIP-seq Support 4 for dataset GSM1084067
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293S / CLIP_emetine_SantaCruzAb
Location of target site ENST00000521381.1 | 3UTR | AUAUAUAUAUAUAUAUAUAUAUAUGUGUGUGUGUGUGUGUGUGUGUGU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23824327 / GSE44404
CLIP-seq Viewer Link
CLIP-seq Support 5 for dataset GSM1084078
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293S / CLIP_nohippuristanol_rep2_AbnovaAb
Location of target site ENST00000521381.1 | 3UTR | GCUAUAUAUAUAUAUAUAUAUAUAUAU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23824327 / GSE44404
CLIP-seq Viewer Link
CLIP-seq Support 6 for dataset GSM714644
Method / RBP PAR-CLIP / AGO2
Cell line / Condition HEK293 / completeT1, repA
Location of target site ENST00000521381.1 | 3UTR | CUGCCCAGGAUGCUGCUAUAUAUAUAUAUAUAUAUAUAUAUGUGUG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 21572407 / GSE28865
CLIP-seq Viewer Link
CLIP-seq Support 7 for dataset GSM714645
Method / RBP PAR-CLIP / AGO2
Cell line / Condition HEK293 / completeT1, repB
Location of target site ENST00000521381.1 | 3UTR | AUGCUGCUAUAUAUAUAUAUAUAUAUAUAUAUG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 21572407 / GSE28865
CLIP-seq Viewer Link
CLIP-seq Support 8 for dataset GSM1065667
Method / RBP PAR-CLIP / AGO1
Cell line / Condition HEK293 / 4-thiouridine, ML_MM_6
Location of target site ENST00000521381.1 | 3UTR | AUGCUGCUAUAUAUAUAUAUAUAUAUAUAUAU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23446348 / GSE43573
CLIP-seq Viewer Link
CLIP-seq Support 9 for dataset GSM1065669
Method / RBP PAR-CLIP / AGO1
Cell line / Condition HEK293 / 4-thiouridine, ML_MM_8
Location of target site ENST00000521381.1 | 3UTR | AUGCUGCUAUAUAUAUAUAUAUAUAUAU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23446348 / GSE43573
CLIP-seq Viewer Link
CLIP-seq Support 10 for dataset GSM1065670
Method / RBP PAR-CLIP / AGO2
Cell line / Condition HEK293 / 4-thiouridine, 3_ML_LG
Location of target site ENST00000521381.1 | 3UTR | AUGCUGCUAUAUAUAUAUAUAU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23446348 / GSE43573
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
GSE34608 Pulmonary tuberculosis and sarcoidosis 0.714 2.0e-4 0.741 9.3e-5 20 Click to see details
GSE21032 Prostate cancer 0.205 3.2e-2 0.141 1.0e-1 83 Click to see details
GSE42095 Differentiated embryonic stem cells -0.371 4.1e-2 -0.412 2.5e-2 23 Click to see details
GSE14794 Lymphoblastoid cells -0.134 1.0e-1 -0.078 2.3e-1 90 Click to see details
GSE38974 Chronic obstructive pulmonary disease 0.216 1.5e-1 0.062 3.8e-1 25 Click to see details
GSE28544 Breast cancer -0.192 1.8e-1 -0.490 7.5e-3 24 Click to see details
GSE32688 Pancreatic cancer 0.137 2.3e-1 0.134 2.3e-1 32 Click to see details
GSE38226 Liver fibrosis -0.124 3.0e-1 -0.151 2.6e-1 21 Click to see details
GSE21687 Ependynoma primary tumors 0.066 3.0e-1 0.140 1.3e-1 64 Click to see details
GSE19536 Breast cancer 0.051 3.1e-1 0.036 3.6e-1 100 Click to see details
GSE26953 Aortic valvular endothelial cells -0.093 3.3e-1 -0.098 3.2e-1 24 Click to see details
GSE27834 Pluripotent stem cells -0.111 3.4e-1 -0.068 4.0e-1 16 Click to see details
GSE17498 Multiple myeloma -0.055 3.7e-1 -0.045 3.9e-1 40 Click to see details
GSE21849 B cell lymphoma 0.051 4.0e-1 0.038 4.2e-1 29 Click to see details
GSE19783 ER- ER- breast cancer 0.024 4.2e-1 -0.001 5.0e-1 79 Click to see details
GSE19783 ER+ ER+ breast cancer 0.048 4.2e-1 0.072 3.8e-1 20 Click to see details
GSE19350 CNS germ cell tumors 0.063 4.2e-1 0.217 2.5e-1 12 Click to see details
GSE17306 Multiple myeloma 0.022 4.4e-1 -0.032 4.1e-1 49 Click to see details
GSE28260 Renal cortex and medulla 0.019 4.8e-1 -0.154 3.1e-1 13 Click to see details
GSE35602 Colorectal cancer stromal tissue -0.001 5.0e-1 -0.056 4.0e-1 25 Click to see details
GSE35602 Colorectal cancer stromal tissue -0.001 5.0e-1 -0.056 4.0e-1 25 Click to see details
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
STAD -0.665 0 -0.713 0 32 Click to see details
THCA -0.431 0 -0.418 0 59 Click to see details
BLCA -0.46 0.03 -0.391 0.05 18 Click to see details
BRCA -0.188 0.04 -0.186 0.05 84 Click to see details
ESCA 0.498 0.06 0.709 0.01 11 Click to see details
KIRC -0.189 0.06 -0.164 0.09 68 Click to see details
HNSC -0.234 0.07 -0.280 0.04 42 Click to see details
CHOL -0.341 0.18 -0.367 0.17 9 Click to see details
UCEC 0.199 0.21 0.214 0.19 19 Click to see details
LIHC -0.116 0.21 -0.136 0.18 49 Click to see details
PAAD 0.408 0.3 0.200 0.4 4 Click to see details
PRAD -0.07 0.31 -0.110 0.22 50 Click to see details
CESC 0.447 0.35 0.500 0.33 3 Click to see details
PCPG -0.418 0.36 -0.500 0.33 3 Click to see details
KICH 0.067 0.38 0.083 0.35 25 Click to see details
COAD -0.13 0.38 -0.381 0.18 8 Click to see details
LUSC 0.034 0.42 0.069 0.34 38 Click to see details
KIRP 0.028 0.44 0.110 0.27 32 Click to see details
LUAD 0.029 0.46 0.028 0.47 12 Click to see details
LUAD 0.029 0.46 0.028 0.47 12 Click to see details
LUAD 0.029 0.46 0.028 0.47 12 Click to see details
MiRNA Regulatory Network:
Functional analysis:
Strong evidence (reporter assay, western blot, qRT-PCR or qPCR) Other evidence
Transcription factor regulation Circular RNA sponge
691 hsa-miR-15a-5p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT000280 BMI1 BMI1 proto-oncogene, polycomb ring finger 5 3
MIRT000282 WNT3A Wnt family member 3A 3 2
MIRT000283 MYB MYB proto-oncogene, transcription factor 5 3
MIRT000284 CDC25A cell division cycle 25A 3 3
MIRT000285 CCND2 cyclin D2 3 5
MIRT000804 RAB9B RAB9B, member RAS oncogene family 1 1
MIRT000806 ACTR1A ARP1 actin related protein 1 homolog A 1 1
MIRT000808 TPI1 triosephosphate isomerase 1 1 1
MIRT000810 PDCD4 programmed cell death 4 3 2
MIRT000812 RAB21 RAB21, member RAS oncogene family 2 1
MIRT000815 BCL2 BCL2, apoptosis regulator 6 13
MIRT000817 WT1 Wilms tumor 1 2 1
MIRT000819 ASXL2 additional sex combs like 2, transcriptional regulator 2 1
MIRT000823 TMEM251 transmembrane protein 251 2 1
MIRT000825 CARD8 caspase recruitment domain family member 8 2 1
MIRT000827 CDC14B cell division cycle 14B 2 1
MIRT000829 CENPJ centromere protein J 2 1
MIRT000831 CEP63 centrosomal protein 63 2 1
MIRT000833 CREBL2 cAMP responsive element binding protein like 2 3 3
MIRT000835 ECHDC1 ethylmalonyl-CoA decarboxylase 1 2 1
MIRT000847 GOLGA5 golgin A5 2 1
MIRT000849 GOLPH3L golgi phosphoprotein 3 like 2 1
MIRT000851 GTF2H1 general transcription factor IIH subunit 1 2 1
MIRT000853 H3F3B H3 histone family member 3B 2 1
MIRT000855 HACE1 HECT domain and ankyrin repeat containing E3 ubiquitin protein ligase 1 2 1
MIRT000857 HDHD2 haloacid dehalogenase like hydrolase domain containing 2 2 1
MIRT000859 HERC6 HECT and RLD domain containing E3 ubiquitin protein ligase family member 6 2 1
MIRT000863 HRSP12 reactive intermediate imine deaminase A homolog 2 1
MIRT000865 HSDL2 hydroxysteroid dehydrogenase like 2 2 1
MIRT000866 HSPA1A heat shock protein family A (Hsp70) member 1A 2 1
MIRT000868 JUN Jun proto-oncogene, AP-1 transcription factor subunit 2 1
MIRT000878 MCL1 MCL1, BCL2 family apoptosis regulator 2 1
MIRT000880 MSH2 mutS homolog 2 2 1
MIRT000884 OMA1 OMA1 zinc metallopeptidase 2 1
MIRT000886 OSGEPL1 O-sialoglycoprotein endopeptidase like 1 2 1
MIRT000888 PDCD6IP programmed cell death 6 interacting protein 2 1
MIRT000890 PHKB phosphorylase kinase regulatory subunit beta 2 1
MIRT000892 PMS1 PMS1 homolog 1, mismatch repair system component 2 1
MIRT000894 PNN pinin, desmosome associated protein 2 1
MIRT000896 PRIM1 DNA primase subunit 1 2 1
MIRT000898 RAD51C RAD51 paralog C 2 1
MIRT000900 RHOT1 ras homolog family member T1 2 1
MIRT000902 RNASEL ribonuclease L 2 1
MIRT000906 SLC35A1 solute carrier family 35 member A1 2 1
MIRT000908 SLC35B3 solute carrier family 35 member B3 2 1
MIRT000910 TIA1 TIA1 cytotoxic granule associated RNA binding protein 2 1
MIRT000914 UGDH UDP-glucose 6-dehydrogenase 2 1
MIRT000916 UGP2 UDP-glucose pyrophosphorylase 2 2 1
MIRT000922 ZNF559 zinc finger protein 559 2 1
MIRT001227 CCND1 cyclin D1 5 7
MIRT001228 CCNE1 cyclin E1 6 8
MIRT001802 BACE1 beta-secretase 1 2 1
MIRT002946 DMTF1 cyclin D binding myb like transcription factor 1 3 3
MIRT003333 BRCA1 BRCA1, DNA repair associated 2 2
MIRT003334 AKT3 AKT serine/threonine kinase 3 2 4
MIRT003872 WIPF1 WAS/WASL interacting protein family member 1 2 1
MIRT003873 VPS45 vacuolar protein sorting 45 homolog 2 1
MIRT003874 HSP90B1 heat shock protein 90 beta family member 1 2 1
MIRT003875 SKAP2 src kinase associated phosphoprotein 2 3 1
MIRT003876 NT5DC1 5'-nucleotidase domain containing 1 2 1
MIRT003877 FAM69A family with sequence similarity 69 member A 2 1
MIRT003878 C2orf74 chromosome 2 open reading frame 74 1 1
MIRT003879 FAM122C family with sequence similarity 122C 2 1
MIRT003880 PWWP2A PWWP domain containing 2A 2 1
MIRT003881 C17orf80 chromosome 17 open reading frame 80 2 1
MIRT003882 CCDC111 primase and DNA directed polymerase 2 1
MIRT003883 C2orf43 lipid droplet associated hydrolase 2 1
MIRT003884 C4orf27 histone PARylation factor 1 2 1
MIRT003885 NIPAL2 NIPA like domain containing 2 2 1
MIRT003886 TRMT13 tRNA methyltransferase 13 homolog 2 1
MIRT003887 ANAPC16 anaphase promoting complex subunit 16 2 1
MIRT003888 CADM1 cell adhesion molecule 1 3 1
MIRT003891 TMEM184B transmembrane protein 184B 2 1
MIRT003899 APP amyloid beta precursor protein 3 2
MIRT004046 UCP2 uncoupling protein 2 3 1
MIRT004275 VEGFA vascular endothelial growth factor A 6 11
MIRT004680 TSPYL2 TSPY like 2 2 1
MIRT004829 NFKB1 nuclear factor kappa B subunit 1 3 1
MIRT005552 CHUK conserved helix-loop-helix ubiquitous kinase 4 1
MIRT005763 TP53 tumor protein p53 1 1
MIRT006027 FGF7 fibroblast growth factor 7 2 1
MIRT006176 CLCN3 chloride voltage-gated channel 3 4 1
MIRT006177 CRKL CRK like proto-oncogene, adaptor protein 5 2
MIRT006181 MN1 MN1 proto-oncogene, transcriptional regulator 4 1
MIRT006658 Ccnd1 cyclin D1 1 1
MIRT006801 HMGA1 high mobility group AT-hook 1 4 2
MIRT006805 HMGA2 high mobility group AT-hook 2 3 1
MIRT006913 IFNG interferon gamma 2 1
MIRT006998 PURA purine rich element binding protein A 2 2
MIRT007090 RECK reversion inducing cysteine rich protein with kazal motifs 3 2
MIRT032077 DLK1 delta like non-canonical Notch ligand 1 2 1
MIRT051311 PLA2G2D phospholipase A2 group IID 1 1
MIRT051312 ACVR1B activin A receptor type 1B 1 1
MIRT051313 IKBKG inhibitor of nuclear factor kappa B kinase subunit gamma 1 1
MIRT051314 GCLM glutamate-cysteine ligase modifier subunit 1 1
MIRT051315 PCF11 PCF11 cleavage and polyadenylation factor subunit 1 1
MIRT051316 HIST1H2BK histone cluster 1 H2B family member k 1 1
MIRT051317 ODC1 ornithine decarboxylase 1 1 1
MIRT051318 CALD1 caldesmon 1 1 1
MIRT051319 RPP30 ribonuclease P/MRP subunit p30 1 1
MIRT051320 ASNSD1 asparagine synthetase domain containing 1 1 1
MIRT051321 CCNYL1 cyclin Y like 1 1 1
MIRT051322 RGPD5 RANBP2-like and GRIP domain containing 5 1 1
MIRT051323 PREB prolactin regulatory element binding 1 1
MIRT051324 PDHX pyruvate dehydrogenase complex component X 1 1
MIRT051325 SNX6 sorting nexin 6 1 1
MIRT051326 CNN3 calponin 3 1 1
MIRT051327 KIF1A kinesin family member 1A 1 1
MIRT051328 NAB1 NGFI-A binding protein 1 1 1
MIRT051329 CCT6B chaperonin containing TCP1 subunit 6B 1 1
MIRT051330 CHD4 chromodomain helicase DNA binding protein 4 1 1
MIRT051331 CLCC1 chloride channel CLIC like 1 1 1
MIRT051332 GDI2 GDP dissociation inhibitor 2 1 1
MIRT051333 BRWD1 bromodomain and WD repeat domain containing 1 1 1
MIRT051334 MAPK6 mitogen-activated protein kinase 6 1 1
MIRT051335 PSMC4 proteasome 26S subunit, ATPase 4 1 1
MIRT051336 ATF2 activating transcription factor 2 1 1
MIRT051337 ATP6AP1 ATPase H+ transporting accessory protein 1 1 1
MIRT051338 FBXO3 F-box protein 3 1 1
MIRT051339 PRDX3 peroxiredoxin 3 1 1
MIRT051340 CABIN1 calcineurin binding protein 1 1 1
MIRT051341 FASN fatty acid synthase 1 3
MIRT051342 SEC63 SEC63 homolog, protein translocation regulator