miRTarBase - #MIRT471956 -
pre-miRNA Information
pre-miRNA hsa-mir-15a   
Genomic Coordinates chr13: 50049119 - 50049201
Synonyms MIRN15A, hsa-mir-15a, miRNA15A, MIR15A
Description Homo sapiens miR-15a stem-loop
Comment Reference .
RNA Secondary Structure
Associated Diseases

Mature miRNA Information
Mature miRNA hsa-miR-15a-5p
Sequence 14| UAGCAGCACAUAAUGGUUUGUG |35
Evidence Experimental
Experiments Cloned
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs1355089203 8 dbSNP
rs753467375 11 dbSNP
rs923737993 12 dbSNP
rs766120172 20 dbSNP
rs1359939022 21 dbSNP
Putative Targets

miRNA Expression profile
Human miRNA Tissue Atlas
miRNAs in Extracellular Vesicles

Circulating MicroRNA Expression Profiling
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol NR6A1   
Synonyms CT150, GCNF, GCNF1, NR61, RTR, hGCNF, hRTR
Description nuclear receptor subfamily 6 group A member 1
Transcript NM_001489   
Other Transcripts NM_033334   
Expression
Putative miRNA Targets on NR6A1
3'UTR of NR6A1
(miRNA target sites are highlighted)
>NR6A1|NM_001489|3'UTR
   1 CCTGTTCCAGGCGCCCTCCTCAGGCCAACCACAGCGTCTTGGGTGGGCAGGACAGGCTCTGGAGGGAAAAGCCAGAGAGA
  81 CCAAGATGGAGGCTGTGGAGCAGCATTTCCCGTTGCCTCCATAGCAAGAAGAGTTTTTGTTTGTTTGTCTGTTTTTTTAA
 161 CCTCATTTTTCTATATATTTATTTCACGACAGAGTTGAATGTATGGCCTTCAACATGATGCACATGCTTTTGTGTGAATG
 241 CAGCCAATGCATTTTCTTACAGTTTACAGAATGTGAAGATGTTTAATGTTACAGTGTTGTCATTGTTTAGAAATAGTTCT
 321 TTTGTATTTTGAGGGAGAGGGTGGGATGGGGCTAAGATGACTATTTCCATAATGTTGACAAAGATGACTACCTCAATGGA
 401 AATGGGGGGTGTGGCCATCCCTACTTTTTCCACATTTTCTCAGCAGACTCATACATTTGTCTGTCAGAGAGCAAATTGCC
 481 TTTTTTAGCCACAGAATTGCCAGATAAAACGGCACACTGTAAGGGGGCAAAGTGTTGTTAGGAGATTCACTAAGCAAGGT
 561 TGGTGAGACGGCAACAGGGTAGGAGGTGAGGATTGAGCCACGTCCTTTCCTTGGAAAGCGTGAAAATTAAGAGAGTAGGG
 641 CACAGTGACCATATTTAAGGCAGGTGTCCTTCCACCCAACAAGTCCTAAGGGCAGAAGAATTTCTGTTCTCACACCTTGC
 721 TGCCCCCCTTACCCCTGCACCACCATCATTGTCTACCACTGCGAACTTTCCATCTAGGCAAAGTCCTGGCAATCACTTGA
 801 TCCACAGGACTCGCCTCCCAGCTCCCTCGGGGCCCCCAGCTACCTAGTTTCCTTACCTGGATCTCCTGAGGCCCACCTTC
 881 CTCCTTCCCACTCCCTTACACATTTGACTTCCTATTGGCCCTTTGAAAAACCAGCTGAGCAGAATGCCATGTTCTGAAGC
 961 CTGGTGCCCACTACTGATTTATTCTCCTTTCACCTTGTTTTCTTCAAAGGGTAGTAGGGCAAGGCCAGACTGCAAAAAGA
1041 ATAGACACTCCCCTTTTGAAATCTGTTCCTCTCCCCTCCCCTTCCTACCGCACCCTCAGGTCTAAATCCGAAAACTTCAG
1121 GCTTTTTTAAACAATGAGAAGGACCATTCACCTGTCTGCTGACCAGAAATGTTGCCCCTAAGTTCTTCTCCAAGTTCTCC
1201 TTTTCTCTCCAGAGTGAGACCAGTTTTCCTCAGGGACCCAGGACACAAAGCCCAAGGCCCAGAGTGGCTCAGCTGCCCCT
1281 TACTTCAGCAGTGGACTGGCCAGCCAAGGCCTGGAGGGCTGGAGCCAGAAGCACCTGGAAGGGAAGGGGGGCTTTAAACT
1361 ACCTCAGGTTCCTAATGGCCCGGCTGCTACCTCTGCAGACATGGCCTGGACTCCTTGACCTCTCACTACCTGCCCCACCT
1441 TATCCCAGGACGTGTTCCTTACCCTCTTGACTTTGGCCAGCGCTACACCAGGTCTGTCTTTGAACTCTTTCAGGTGCTTG
1521 TCCTGCCTACACCCAGGTATCTTTCACAGCCAGTGTGGCAAGCAGACCACTTAGTTGGCTGCATGCCTGGGTAGGTTGGA
1601 AGGGCCCACGGCACCTTCTTCTGCCTATTTAGTCAAAGGCTGTTTGCTGTCTCCTCAACTCAACCTAGTAAAGCTACCCA
1681 GGAGGGCACCACGTCGTGTGCATACTGGGTAGTCCATGTCTGATTGTAATTGTTTCTTTCTGGTGAAATGTTACGGGTAC
1761 CAGCAGAGTGATGATTTTGGCCCTTGATGGATCTAAAACTCGGAACATTACTCCTCAATGCCGTTTCCCCAGTTGCTCTG
1841 AGAAGGAAGAGACATGTTCCTCAGGAAAAGCTCCAGCTAGCATGTTTTTCACGTCAGTGGGAAGATTCTTGTGTGTTCGT
1921 GTGTATCTGTTTATTTCTAAGTTCACGATACTTGTTCCCCTGAATTTTATTTAACCAACTAGATCACATTCTTTGGCCAC
2001 AGGTCAGACTCTGAGCTGCTTTCCTCCAGATCGGGAAGGAGACACATATCACAGATGCCTTCTCTAAGACAGCTCCTGTG
2081 TACAGCATCGTTCTTTGCTGAGGCCTCTATCTGTCCAATTATTATTTTTGAAATTGCTTTTCAAATTAAACATTTTACCC
2161 GTTGTGTTGGGTGTCAAAAGAAATTGCTCTCTGATGAGGCAAGAACATGTCTCTCCAACAACGTAGTATTGAACAGAGCA
2241 AGTTGTTAATTTGTGGAGTAGGGGAAAGGTTCTGCAAGTTGCCATTGTACAAATCCAGTTTTACAAATGTTTGCAGCAGA
2321 TTCCACAGAACAAAGAGCCCATTCATTGCCGAGAGCCCTGCAGAATCTCAGAGCAAAGTGGCTGTGTGTTCCGAGCCGGA
2401 GCCTGACCTGTGGACCGTCTTTAATGTCTTCTGCACCAGTCCTTTTATGACGTGGGCTTTTTTTAAACAGGGTAAAGTGA
2481 ATGTGTTGCATTGCAAACTCAGGTATTATGAGGAGAAGGTAGGAGTGTAGCTAGCAGCGTGGAGACATTAGGTCAGCCAC
2561 TAGATGTATTTGTGAATTTGGTTTGAAGGACACGGAGAAAGGTTGGAGGGGAGGTTTGGTGTGTTTGTTTTTTGCTTTCT
2641 TCCCCATAATGTTTGGTTAACAGGTAGCCTTTTTGCGAGTGGAAGGAGAGAAAAGTTGTGCATGTTTTCTCTAATTTCTC
2721 TTTCTGCCCTCTCTCTGATCCCCAACCACCAAAAGCACTCACTTTGAGTGAGGATTTTTTTTTTTTTTTTTTTTTTTTTT
2801 TTTGAGGCGGAGTCTCGCTCTGTCGCTCAGGCTGGAGTGCAGTGGTGCGATCTTGGCTCACTGCAAGCTCCGCCTCCCGG
2881 GTTCATGCCATTCTCCTGCCTCAGCCTCCTGAGTAGCTGGGACTACAGGCGCCCGCCACCACACCCGGCTAACTTTTTTT
2961 GTATTTTTAGTAGAAACATTGTTTCACCACGTTAGCCAGGATGGTCTCCATCTCCTGACCTCGTGATCCGCCTGCCTCGG
3041 CCTCCCAAAGTGCTGGGATTACAGGCGTGAGCCACTGCACCCAGCCGAGTGAGAATTTTTATGCCATAAAAATACGACTC
3121 TGAAAGCTACATGGAAAAGGAGAATCCCACCTCCTTGCACTACATTGAAACATGCAAGCCTTTCCCTCCCTCTCCTTTTT
3201 GATGTTTTCTTGTCCCAAGACAAAAGTTTGGCATCTTGGAACTTATTCATGCTCTCTGGCTGCCTTTGTAGACTTTTGGA
3281 GTCCTTTGCAAGGTTTGGTGGTCTCGTCGTTAATCTGGAGAAATTCCCCAGAATCTGTCTCAAAGCGCTCAACCTGGCTC
3361 AGAGGACACCCAGCCCCTATGCCCCACTCACAAGAGAGGTGGGCAAGCCCCCAGGGATAGGAGGAAGTAAGCAGGATCCT
3441 CCCTGTCCTGTTTCCCAGAACCAGAGCAAGGAATGGGGAATCCTAAGGGTTTCTGTGGCATCACTGAATGTCACCCACTC
3521 CACATCAACCTGCCTCTCACCTGCCACCCTTTTTCAGGGAGGTGAGTACCTGCCATGGTCACTGTTACCAGATCCTTAAA
3601 ATCCTGGGCTCTGAGCTAGGTGCATTGCTCTGTTACCCATTTCCTACATTTGTTTGTTTGTTCTTGATTTCCTGGGGGAA
3681 TGGGACTGATGGAGACAGACAAACCCACTGTGGGCAGCATCTAAGCCATGTCCAAGGTTGGTCGAATTAAGGGAACCCTG
3761 GCCTCTCAGCAGGACAGAAAGCTGAGCTGTGGTTCCAGGCCCTCCTCTCTGGGCCCCTGGTGTGTATCTTTTTTCCTTGT
3841 TGCTTTTGAAATTTTTGCAATTATTTTAAGAATCCAGTCTTTCAGACCAGCCCTTTTATTAAGCTTTGAATTTTTAATTG
3921 ATTTTTTTAAAGTAAAAAAAAAAAAAACCCAAAAAACAAACAAAATTTAACAAAAAAATCCGCTACTCTTACTCCCCTGC
4001 CTCCCCCTACCCCAGCCCATGAGAGTTCCCTTGCACTCCCCTCTGCCTTTGCAACTGATCATCCTCCCTTTCTCCTTGGC
4081 TTGAAGCATCTATGTCCAGTATCTGTGAAATGATGTTTTATCTGTGTGTCAGGATGAGAAACGGCAGTCATTCCACCAAG
4161 TGTTGGAAACTGGTTAGCCTGGAGACAAGGGTTTCTGGGGCCACAGCTCAGGGATGTGTATTTAATTACAGGATCCCCAG
4241 AAACTCCTCTCTAGGCTGCCACAGCAACATTTTTTCTGGGCTTGGGAGCCATACCTGAACTGTTTCCTCCAAGGCGGGAA
4321 CTCCAGAGAGCCTGCCAAGTCTGGAGCAAGCTGGGGCTTCTGCTTTGGCCAGACCTGGGCCACCATGAGACTTGAAGGCT
4401 TCTAGCTGTCCTACGACACGAGCCACGGTGGCCCTGCCTCTCCCCGCTCATAGAAGCCTGGTCCCTCTGTCTAGCCCAGT
4481 TCCCATCTAGCATCCGTCTTCTGGGCCTGAAGCCCTAAATGGACCACAGCCTGCACAGGAATCAACTGTAGGCTCAAAGG
4561 GAGGCGGTGAGTAAGGTCAGAGCCTGCTCCAAGCCCAAGAACAAAAGTTGTGTTATGGGTGGAGGCTAGTCCCCCAGATC
4641 TAGCCCTGCCGTCTTTGCCCTTTAATGACCATTGTTTTCTTTCTCTAAAATGTCTTGTAATAGGTGATAATGTTGTTGAT
4721 TCAAATTTCCATGAAAAAGAAAAAAAAAACTACCTCTTAAGCGACATCCTGGTCGATTCCTCTCTGAGGAATCCTGTGGG
4801 AAAAGAATACTGTAGCTCCTGCTCTGTTTACATGTTTCTGTCGGGAAAGAAGCCCCGCCTGCCCTGGGGTGTTGGTGTTT
4881 TTGTCTGTGTTGCCATCCCAGGTCTGCCATAGGGGCTGGTGGCTGCATTGTGATGTCTGGGCTGTGTCTGGGGATTCCTT
4961 CCCACCTACCCAGCCAGGGACTAGTCACCCCCCTGAAGAGGCCTCCATTTCCTTCCTGTGCTCCAGGGCATAGGGAGCAC
5041 CACTCCCACAGACACCACCTTTAAGGGCTCTAGTGGCACACACATCCACGAGCCTACCCCCAGGTTACCTGCCCTAGGTC
5121 CACCTCCACCCACAGTCCTGTGTGTAGGAATCGAGGAAACGGGATGTCCCTGAGCCCTTGTCTCCAAAGGGCCGGCCAAG
5201 GGCTGCCCGCCAGCCTGACTCCATCAACCCTCCATGACCAAATGATAGCTGGCGGGCTCTGCAGGCTACCCAGGCCCTCT
5281 GCTACCTCCCACCCTGCCAGCTGGCAAGGGATGGGCCCTGTTCTGTGAATTGACTACCTGTGGAAATGTGACCAATTAGT
5361 GTGAAATGCATGTTTAGCAAGTGTTAGGTACTGTATTTGAACCAATAAATGTGAATCCTTCTGCACATGG
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions (Predicted by miRanda)
IDDuplex structurePositionScoreMFE
1
miRNA  3' gugUUUGGUAA-UACAC-GACGAu 5'
             ::|||||| |  || ||||| 
Target 5' gaaGGACCATTCACCTGTCTGCTg 3'
1138 - 1161 131.00 -14.50
2
miRNA  3' guGUUUGG--UAAUACACGACGAu 5'
            ||:::|  | | || |||||| 
Target 5' caCAGGTCAGACTCTGAGCTGCTt 3'
1998 - 2021 130.00 -18.20
3
miRNA  3' guguuUGGUAAUA---CACGACGAu 5'
               |:| || |    ||:|||| 
Target 5' tgtgtATCTTTTTTCCTTGTTGCTt 3'
3821 - 3845 129.00 -7.40
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN30115829 19 COSMIC
COSN26575177 120 COSMIC
COSN26637515 162 COSMIC
COSN31522382 199 COSMIC
COSN24303066 277 COSMIC
COSN2310360 343 COSMIC
COSN26390535 1118 COSMIC
COSN15034542 1273 COSMIC
COSN22452532 2086 COSMIC
COSN24881273 2593 COSMIC
COSN2310359 2594 COSMIC
COSN18821443 2658 COSMIC
COSN22546737 2835 COSMIC
COSN6379794 2931 COSMIC
COSN32214817 3591 COSMIC
COSN15942134 3635 COSMIC
COSN9699855 3961 COSMIC
COSN22191127 4402 COSMIC
COSN29643521 4606 COSMIC
COSN9699854 4634 COSMIC
COSN28489003 4739 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs1295272465 2 dbSNP
rs1227523445 4 dbSNP
rs1367716090 6 dbSNP
rs1288747346 9 dbSNP
rs761705437 12 dbSNP
rs922065328 12 dbSNP
rs763732031 13 dbSNP
rs1433855462 15 dbSNP
rs1348929670 16 dbSNP
rs376592254 18 dbSNP
rs1431982676 20 dbSNP
rs759173687 24 dbSNP
rs1168540115 31 dbSNP
rs1455044904 34 dbSNP
rs942425197 35 dbSNP
rs77655514 36 dbSNP
rs1488310537 38 dbSNP
rs766166250 39 dbSNP
rs988615040 41 dbSNP
rs1483929344 43 dbSNP
rs762704478 47 dbSNP
rs1166410001 49 dbSNP
rs956791576 52 dbSNP
rs1485744639 53 dbSNP
rs1435167418 57 dbSNP
rs758088952 58 dbSNP
rs986521988 59 dbSNP
rs548774751 64 dbSNP
rs1404679093 71 dbSNP
rs998145079 90 dbSNP
rs1213479272 92 dbSNP
rs1318675195 94 dbSNP
rs535628589 102 dbSNP
rs1327462889 111 dbSNP
rs1018529805 112 dbSNP
rs1232488677 113 dbSNP
rs1005745508 116 dbSNP
rs1341888745 118 dbSNP
rs1212092388 128 dbSNP
rs888592494 129 dbSNP
rs76928679 138 dbSNP
rs1047203572 141 dbSNP
rs1482085911 145 dbSNP
rs1295402567 147 dbSNP
rs758035267 149 dbSNP
rs1186581208 151 dbSNP
rs1430174788 151 dbSNP
rs1389553673 153 dbSNP
rs1454528982 159 dbSNP
rs1175305390 165 dbSNP
rs923887117 175 dbSNP
rs1361277971 184 dbSNP
rs566490839 187 dbSNP
rs1056062392 189 dbSNP
rs1385739491 194 dbSNP
rs1437449950 195 dbSNP
rs1319090587 203 dbSNP
rs939020949 220 dbSNP
rs546651352 221 dbSNP
rs766854151 225 dbSNP
rs1064785 229 dbSNP
rs926578452 232 dbSNP
rs1110026 233 dbSNP
rs41274378 236 dbSNP
rs562476240 237 dbSNP
rs915078866 242 dbSNP
rs376911753 247 dbSNP
rs1247285443 269 dbSNP
rs1468882342 276 dbSNP
rs1195189624 286 dbSNP
rs550570046 291 dbSNP
rs1422811002 297 dbSNP
rs1432441452 308 dbSNP
rs532048748 310 dbSNP
rs773490752 315 dbSNP
rs764833557 319 dbSNP
rs563138309 321 dbSNP
rs960807642 323 dbSNP
rs187766139 324 dbSNP
rs1442292403 331 dbSNP
rs1004921862 335 dbSNP
rs1260367661 340 dbSNP
rs1386633476 343 dbSNP
rs886405786 345 dbSNP
rs1307228571 359 dbSNP
rs574175709 369 dbSNP
rs765618772 396 dbSNP
rs543876790 405 dbSNP
rs1335326575 407 dbSNP
rs1223650711 409 dbSNP
rs1244978194 410 dbSNP
rs1248614472 410 dbSNP
rs964024204 416 dbSNP
rs1212817483 421 dbSNP
rs1018559396 425 dbSNP
rs1473713971 430 dbSNP
rs900693599 441 dbSNP
rs1411345990 442 dbSNP
rs375312834 445 dbSNP
rs182776978 451 dbSNP
rs116719805 454 dbSNP
rs1457702777 457 dbSNP
rs1234065429 466 dbSNP
rs1299127570 466 dbSNP
rs78876029 474 dbSNP
rs1293469149 482 dbSNP
rs1287390039 484 dbSNP
rs1051251296 485 dbSNP
rs1229575709 487 dbSNP
rs1363243638 497 dbSNP
rs1287613597 505 dbSNP
rs537806702 510 dbSNP
rs1204909947 514 dbSNP
rs71495523 519 dbSNP
rs1397058015 521 dbSNP
rs1484126529 524 dbSNP
rs1180271330 527 dbSNP
rs1251454523 530 dbSNP
rs979383960 535 dbSNP
rs1166121442 548 dbSNP
rs10986357 550 dbSNP
rs1003191843 569 dbSNP
rs141340739 570 dbSNP
rs1167669912 575 dbSNP
rs1429830400 579 dbSNP
rs1044688472 593 dbSNP
rs1372781238 598 dbSNP
rs1428290907 601 dbSNP
rs916484480 602 dbSNP
rs990693402 606 dbSNP
rs535315891 619 dbSNP
rs566641649 620 dbSNP
rs1378267710 621 dbSNP
rs1215101418 623 dbSNP
rs1254591751 626 dbSNP
rs1339805326 631 dbSNP
rs1104924 635 dbSNP
rs879876536 636 dbSNP
rs558129771 641 dbSNP
rs550087801 646 dbSNP
rs539543733 650 dbSNP
rs942736054 661 dbSNP
rs1302770839 668 dbSNP
rs144286846 679 dbSNP
rs950767942 680 dbSNP
rs148544173 682 dbSNP
rs994784667 685 dbSNP
rs1326950850 691 dbSNP
rs1415826672 700 dbSNP
rs750861996 706 dbSNP
rs953081164 714 dbSNP
rs1358059385 723 dbSNP
rs1025894004 724 dbSNP
rs544944970 729 dbSNP
rs973347375 729 dbSNP
rs1227336930 732 dbSNP
rs1303922156 734 dbSNP
rs1296156316 739 dbSNP
rs900801788 740 dbSNP
rs1345905620 741 dbSNP
rs1221139449 743 dbSNP
rs1276850607 747 dbSNP
rs374278237 748 dbSNP
rs1370570504 758 dbSNP
rs1209494959 762 dbSNP
rs1003265964 763 dbSNP
rs1172498451 766 dbSNP
rs904923211 769 dbSNP
rs773895770 780 dbSNP
rs1017803967 784 dbSNP
rs1010568566 785 dbSNP
rs530513308 787 dbSNP
rs770820126 796 dbSNP
rs893748743 812 dbSNP
rs1009027500 813 dbSNP
rs563221826 818 dbSNP
rs1386316411 822 dbSNP
rs1434296473 826 dbSNP
rs1050882050 828 dbSNP
rs935174622 829 dbSNP
rs901022610 831 dbSNP
rs935043960 833 dbSNP
rs1229038886 854 dbSNP
rs1197704685 868 dbSNP
rs1270095359 871 dbSNP
rs1040869777 872 dbSNP
rs1208638463 880 dbSNP
rs902245100 894 dbSNP
rs942768685 896 dbSNP
rs1350641413 899 dbSNP
rs192762848 900 dbSNP
rs1472733523 902 dbSNP
rs946364806 908 dbSNP
rs145682890 911 dbSNP
rs1409107688 919 dbSNP
rs1334430228 926 dbSNP
rs990703131 932 dbSNP
rs187253703 934 dbSNP
rs931325189 935 dbSNP
rs866165658 949 dbSNP
rs1403340254 950 dbSNP
rs747889023 951 dbSNP
rs1392720758 952 dbSNP
rs1330673600 964 dbSNP
rs1370816206 966 dbSNP
rs1284437392 987 dbSNP
rs1410682759 998 dbSNP
rs983568236 1001 dbSNP
rs1311707131 1005 dbSNP
rs950893544 1013 dbSNP
rs972991399 1024 dbSNP
rs960257934 1031 dbSNP
rs1432378304 1032 dbSNP
rs111644528 1034 dbSNP
rs1208394766 1036 dbSNP
rs755215158 1037 dbSNP
rs577723500 1038 dbSNP
rs964647635 1041 dbSNP
rs564230059 1042 dbSNP
rs1187664496 1045 dbSNP
rs1361787639 1047 dbSNP
rs1009078316 1048 dbSNP
rs544245712 1050 dbSNP
rs1162370435 1051 dbSNP
rs562468235 1052 dbSNP
rs1031058737 1053 dbSNP
rs575209371 1061 dbSNP
rs182552429 1067 dbSNP
rs999454180 1068 dbSNP
rs901055064 1069 dbSNP
rs1040900646 1071 dbSNP
rs1185872074 1073 dbSNP
rs1006727052 1075 dbSNP
rs889904680 1077 dbSNP
rs1343277368 1080 dbSNP
rs1048463701 1086 dbSNP
rs1032283732 1089 dbSNP
rs931332273 1094 dbSNP
rs1200461646 1109 dbSNP
rs999012523 1110 dbSNP
rs1349188531 1118 dbSNP
rs902302702 1121 dbSNP
rs918614048 1123 dbSNP
rs1043490069 1138 dbSNP
rs542121358 1143 dbSNP
rs1229436614 1145 dbSNP
rs1388512548 1151 dbSNP
rs190685598 1158 dbSNP
rs1036965767 1168 dbSNP
rs74364836 1177 dbSNP
rs1336618312 1185 dbSNP
rs894775903 1190 dbSNP
rs766453089 1193 dbSNP
rs1437674370 1197 dbSNP
rs1055066369 1198 dbSNP
rs1295864495 1203 dbSNP
rs939237610 1204 dbSNP
rs927890786 1205 dbSNP
rs1048045869 1207 dbSNP
rs1199437642 1212 dbSNP
rs139609342 1214 dbSNP
rs980271728 1215 dbSNP
rs970187126 1216 dbSNP
rs1247200784 1218 dbSNP
rs1433619816 1234 dbSNP
rs1177015610 1240 dbSNP
rs916338908 1244 dbSNP
rs1381530793 1249 dbSNP
rs1374008841 1266 dbSNP
rs920687006 1268 dbSNP
rs973418601 1273 dbSNP
rs1160055367 1276 dbSNP
rs957996542 1278 dbSNP
rs1389932548 1283 dbSNP
rs1437916320 1292 dbSNP
rs570603758 1297 dbSNP
rs1361692017 1299 dbSNP
rs1030672271 1300 dbSNP
rs1302929154 1327 dbSNP
rs1329020321 1329 dbSNP
rs964699682 1335 dbSNP
rs1163137971 1337 dbSNP
rs910522105 1338 dbSNP
rs1268217610 1339 dbSNP
rs1331066049 1341 dbSNP
rs987417916 1347 dbSNP
rs557089703 1350 dbSNP
rs955151893 1351 dbSNP
rs765879851 1352 dbSNP
rs1031921892 1368 dbSNP
rs1192726719 1381 dbSNP
rs758367907 1382 dbSNP
rs999464883 1393 dbSNP
rs1198710522 1395 dbSNP
rs1006759541 1401 dbSNP
rs889612073 1411 dbSNP
rs1157551078 1413 dbSNP
rs1048681183 1416 dbSNP
rs537071922 1418 dbSNP
rs1264536958 1420 dbSNP
rs1022058686 1421 dbSNP
rs1010637707 1424 dbSNP
rs1388049419 1428 dbSNP
rs894826595 1436 dbSNP
rs1054825901 1438 dbSNP
rs1003192857 1443 dbSNP
rs906476794 1447 dbSNP
rs1047605047 1451 dbSNP
rs147223811 1452 dbSNP
rs547843189 1457 dbSNP
rs1284234951 1459 dbSNP
rs1223408691 1471 dbSNP
rs529592727 1473 dbSNP
rs1252861443 1475 dbSNP
rs1490141083 1475 dbSNP
rs185918047 1480 dbSNP
rs910617132 1481 dbSNP
rs12686375 1482 dbSNP
rs1435542600 1485 dbSNP
rs1348490109 1491 dbSNP
rs533345631 1505 dbSNP
rs990687232 1510 dbSNP
rs762170625 1516 dbSNP
rs1414847594 1517 dbSNP
rs143769255 1519 dbSNP
rs1340685082 1520 dbSNP
rs977788527 1534 dbSNP
rs965031724 1537 dbSNP
rs544281100 1545 dbSNP
rs1375281516 1549 dbSNP
rs1310569032 1550 dbSNP
rs1358421906 1554 dbSNP
rs968895604 1557 dbSNP
rs1321259698 1558 dbSNP
rs1406907337 1569 dbSNP
rs1228933969 1575 dbSNP
rs1275561066 1580 dbSNP
rs1484178198 1583 dbSNP
rs1202447275 1593 dbSNP
rs1232390189 1600 dbSNP
rs1483654924 1605 dbSNP
rs1184110277 1609 dbSNP
rs139643795 1610 dbSNP
rs991642789 1612 dbSNP
rs1019567733 1615 dbSNP
rs959134849 1616 dbSNP
rs1033427939 1617 dbSNP
rs1169377517 1625 dbSNP
rs1359229860 1627 dbSNP
rs1003628194 1634 dbSNP
rs1251470576 1637 dbSNP
rs7852183 1649 dbSNP
rs541813721 1651 dbSNP
rs1452946426 1654 dbSNP
rs184093006 1665 dbSNP
rs1213464702 1669 dbSNP
rs1336963274 1670 dbSNP
rs1299187446 1675 dbSNP
rs1272654018 1678 dbSNP
rs1312817692 1680 dbSNP
rs1212360553 1683 dbSNP
rs1241789698 1686 dbSNP
rs993398990 1692 dbSNP
rs899072099 1693 dbSNP
rs1189544481 1694 dbSNP
rs1002850550 1695 dbSNP
rs1037517855 1696 dbSNP
rs1044343835 1702 dbSNP
rs943202190 1704 dbSNP
rs147417527 1709 dbSNP
rs546070239 1713 dbSNP
rs1051823905 1714 dbSNP
rs770499626 1718 dbSNP
rs1405181805 1724 dbSNP
rs577089873 1726 dbSNP
rs1322539695 1728 dbSNP
rs1408433002 1736 dbSNP
rs113714639 1737 dbSNP
rs924613395 1738 dbSNP
rs923715215 1742 dbSNP
rs540275064 1745 dbSNP
rs1220949101 1750 dbSNP
rs1261352414 1754 dbSNP
rs552593821 1754 dbSNP
rs1209899604 1768 dbSNP
rs1393849683 1789 dbSNP
rs1445614681 1793 dbSNP
rs943746550 1797 dbSNP
rs1246886900 1801 dbSNP
rs537160909 1802 dbSNP
rs991696641 1806 dbSNP
rs1196579086 1811 dbSNP
rs1427974822 1818 dbSNP
rs1472672925 1820 dbSNP
rs1161250022 1821 dbSNP
rs1478594701 1822 dbSNP
rs148222846 1823 dbSNP
rs958826063 1831 dbSNP
rs532888944 1833 dbSNP
rs981860926 1834 dbSNP
rs1435734704 1848 dbSNP
rs1350625341 1852 dbSNP
rs1438857219 1856 dbSNP
rs1276096065 1862 dbSNP
rs985498935 1875 dbSNP
rs1229141268 1876 dbSNP
rs970812619 1880 dbSNP
rs1349202555 1881 dbSNP
rs769925142 1885 dbSNP
rs1026006845 1891 dbSNP
rs993549543 1892 dbSNP
rs899126396 1893 dbSNP
rs111671611 1901 dbSNP
rs1301227354 1906 dbSNP
rs773291506 1911 dbSNP
rs1453748263 1914 dbSNP
rs554558443 1918 dbSNP
rs567145990 1919 dbSNP
rs1183749876 1921 dbSNP
rs1361921100 1922 dbSNP
rs143847286 1929 dbSNP
rs1163826256 1937 dbSNP
rs1440228107 1938 dbSNP
rs546897973 1944 dbSNP
rs1422557504 1946 dbSNP
rs192260288 1947 dbSNP
rs903254293 1949 dbSNP
rs533379872 1950 dbSNP
rs1410470847 1954 dbSNP
rs1002924051 1957 dbSNP
rs971421118 1958 dbSNP
rs1285374223 1964 dbSNP
rs1434239268 1976 dbSNP
rs1041744955 1979 dbSNP
rs1244304210 1981 dbSNP
rs1290527281 1983 dbSNP
rs947368139 1988 dbSNP
rs748014183 1997 dbSNP
rs1022923803 2021 dbSNP
rs1013329907 2028 dbSNP
rs1247785486 2029 dbSNP
rs149461637 2032 dbSNP
rs781113152 2033 dbSNP
rs999056753 2035 dbSNP
rs1442494701 2047 dbSNP
rs137901252 2051 dbSNP
rs1407648472 2057 dbSNP
rs1384767247 2058 dbSNP
rs1430661299 2063 dbSNP
rs768802562 2070 dbSNP
rs1394418543 2072 dbSNP
rs530276101 2073 dbSNP
rs560825580 2077 dbSNP
rs1335427435 2078 dbSNP
rs943779443 2082 dbSNP
rs937510521 2087 dbSNP
rs1314807905 2089 dbSNP
rs928791104 2090 dbSNP
rs186083932 2096 dbSNP
rs562001983 2099 dbSNP
rs75296944 2108 dbSNP
rs1277574374 2113 dbSNP
rs1338154058 2113 dbSNP
rs757819246 2116 dbSNP
rs1258131491 2122 dbSNP
rs918997127 2128 dbSNP
rs1312724608 2135 dbSNP
rs1314265583 2147 dbSNP
rs1393721844 2148 dbSNP
rs1195557928 2149 dbSNP
rs1331459586 2152 dbSNP
rs974413828 2157 dbSNP
rs528475731 2160 dbSNP
rs971737007 2161 dbSNP
rs908388394 2168 dbSNP
rs1414242833 2177 dbSNP
rs145150472 2180 dbSNP
rs981201749 2194 dbSNP
rs1382238617 2196 dbSNP
rs1292934402 2200 dbSNP
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rs962983818 2219 dbSNP
rs1233256210 2221 dbSNP
rs780088571 2223 dbSNP
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rs953349553 2281 dbSNP
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rs1034434738 2888 dbSNP
rs1386944063 2889 dbSNP
rs1372199978 2890 dbSNP
rs1195663337 2892 dbSNP
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rs1371078158 2900 dbSNP
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rs1304450587 2990 dbSNP
rs559187449 2991 dbSNP
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rs1362756319 4984 dbSNP
rs1397068983 4988 dbSNP
rs1302065894 4992 dbSNP
rs551135649 4993 dbSNP
rs980793519 4994 dbSNP
rs968739998 5001 dbSNP
rs1379153145 5033 dbSNP
rs986615165 5037 dbSNP
rs531311994 5045 dbSNP
rs567891523 5052 dbSNP
rs1009763697 5054 dbSNP
rs1267763981 5056 dbSNP
rs892657439 5058 dbSNP
rs562565818 5063 dbSNP
rs1000869343 5067 dbSNP
rs1213487548 5070 dbSNP
rs1409903039 5072 dbSNP
rs903826728 5077 dbSNP
rs1029809899 5083 dbSNP
rs1023900215 5089 dbSNP
rs1176468903 5090 dbSNP
rs997684950 5093 dbSNP
rs1166746370 5097 dbSNP
rs1012941015 5098 dbSNP
rs548745218 5102 dbSNP
rs771138504 5104 dbSNP
rs1402241377 5105 dbSNP
rs1449272723 5109 dbSNP
rs115417410 5116 dbSNP
rs886867571 5118 dbSNP
rs747950438 5120 dbSNP
rs887718094 5136 dbSNP
rs141696676 5150 dbSNP
rs1484480366 5151 dbSNP
rs1046761321 5152 dbSNP
rs541724621 5153 dbSNP
rs1259109026 5154 dbSNP
rs778622872 5160 dbSNP
rs572746107 5161 dbSNP
rs1483265887 5163 dbSNP
rs1253523134 5165 dbSNP
rs929195337 5175 dbSNP
rs1203956280 5178 dbSNP
rs919098270 5180 dbSNP
rs1463872457 5184 dbSNP
rs1285943370 5191 dbSNP
rs991966869 5193 dbSNP
rs939471241 5194 dbSNP
rs1240495825 5203 dbSNP
rs1373786180 5205 dbSNP
rs796225525 5208 dbSNP
rs942637607 5209 dbSNP
rs182699374 5215 dbSNP
rs1342692322 5219 dbSNP
rs1213210346 5221 dbSNP
rs1294343037 5222 dbSNP
rs926721450 5230 dbSNP
rs1211847882 5235 dbSNP
rs1277568247 5251 dbSNP
rs749428189 5253 dbSNP
rs1217164861 5254 dbSNP
rs1265286852 5256 dbSNP
rs1061136 5259 dbSNP
rs3832601 5273 dbSNP
rs1185695609 5285 dbSNP
rs759697433 5285 dbSNP
rs1425661040 5293 dbSNP
rs1433981419 5296 dbSNP
rs1178583252 5304 dbSNP
rs879759840 5328 dbSNP
rs968023366 5329 dbSNP
rs1434183622 5330 dbSNP
rs796496860 5333 dbSNP
rs545577000 5336 dbSNP
rs35564563 5344 dbSNP
rs1429300202 5348 dbSNP
rs986638407 5352 dbSNP
rs1022282803 5355 dbSNP
rs1368826700 5370 dbSNP
rs753362650 5376 dbSNP
rs779449544 5387 dbSNP
rs988406975 5388 dbSNP
rs1337113504 5405 dbSNP
rs1346467686 5423 dbSNP
rs576649687 5431 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions TZM-bl
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... PAR-CLIP data was present in GSM1462574. RNA binding protein: AGO2. Condition:TZM-bl ami BaL ...

- Whisnant AW; Bogerd HP; Flores O; Ho P; et al., 2013, mBio.

miRNA-target interactions (Provided by authors)
IDDuplex structurePosition
1
miRNA  3' guguuugguaauacaCGACGAu 5'
                         |||||| 
Target 5' -----------cccgGCUGCUa 3'
1 - 11
Article - Whisnant AW; Bogerd HP; Flores O; Ho P; et al.
- mBio, 2013
UNLABELLED: The question of how HIV-1 interfaces with cellular microRNA (miRNA) biogenesis and effector mechanisms has been highly controversial. Here, we first used deep sequencing of small RNAs present in two different infected cell lines (TZM-bl and C8166) and two types of primary human cells (CD4(+) peripheral blood mononuclear cells [PBMCs] and macrophages) to unequivocally demonstrate that HIV-1 does not encode any viral miRNAs. Perhaps surprisingly, we also observed that infection of T cells by HIV-1 has only a modest effect on the expression of cellular miRNAs at early times after infection. Comprehensive analysis of miRNA binding to the HIV-1 genome using the photoactivatable ribonucleoside-induced cross-linking and immunoprecipitation (PAR-CLIP) technique revealed several binding sites for cellular miRNAs, a subset of which were shown to be capable of mediating miRNA-mediated repression of gene expression. However, the main finding from this analysis is that HIV-1 transcripts are largely refractory to miRNA binding, most probably due to extensive viral RNA secondary structure. Together, these data demonstrate that HIV-1 neither encodes viral miRNAs nor strongly influences cellular miRNA expression, at least early after infection, and imply that HIV-1 transcripts have evolved to avoid inhibition by preexisting cellular miRNAs by adopting extensive RNA secondary structures that occlude most potential miRNA binding sites. IMPORTANCE: MicroRNAs (miRNAs) are a ubiquitous class of small regulatory RNAs that serve as posttranscriptional regulators of gene expression. Previous work has suggested that HIV-1 might subvert the function of the cellular miRNA machinery by expressing viral miRNAs or by dramatically altering the level of cellular miRNA expression. Using very sensitive approaches, we now demonstrate that neither of these ideas is in fact correct. Moreover, HIV-1 transcripts appear to largely avoid regulation by cellular miRNAs by adopting an extensive RNA secondary structure that occludes the ability of cellular miRNAs to interact with viral mRNAs. Together, these data suggest that HIV-1, rather than seeking to control miRNA function in infected cells, has instead evolved a mechanism to become largely invisible to cellular miRNA effector mechanisms.
LinkOut: [PMID: 23592263]
CLIP-seq Support 1 for dataset GSM1462574
Method / RBP PAR-CLIP / AGO2
Cell line / Condition TZM-bl / TZM-bl ami BaL
Location of target site ENST00000487099.2 | 3UTR | CCCGGCUGCUACCUCUG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23592263 / GSE59944
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
GSE42095 Differentiated embryonic stem cells -0.647 4.2e-4 -0.679 1.8e-4 23 Click to see details
GSE21032 Prostate cancer -0.26 8.8e-3 -0.209 2.9e-2 83 Click to see details
GSE32688 Pancreatic cancer -0.31 4.2e-2 -0.063 3.7e-1 32 Click to see details
GSE35602 Colorectal cancer stromal tissue 0.286 8.3e-2 0.388 2.8e-2 25 Click to see details
GSE19783 ER- ER- breast cancer 0.149 9.5e-2 0.141 1.1e-1 79 Click to see details
GSE17306 Multiple myeloma 0.182 1.1e-1 0.220 6.4e-2 49 Click to see details
GSE19536 Breast cancer 0.091 1.8e-1 0.064 2.6e-1 100 Click to see details
GSE38974 Chronic obstructive pulmonary disease -0.157 2.3e-1 -0.244 1.2e-1 25 Click to see details
GSE28260 Renal cortex and medulla -0.228 2.3e-1 -0.148 3.1e-1 13 Click to see details
GSE17498 Multiple myeloma 0.112 2.5e-1 0.137 2.0e-1 40 Click to see details
GSE21687 Ependynoma primary tumors -0.078 2.7e-1 0.047 3.6e-1 64 Click to see details
GSE26953 Aortic valvular endothelial cells 0.091 3.4e-1 0.142 2.5e-1 24 Click to see details
GSE38226 Liver fibrosis -0.095 3.4e-1 -0.087 3.5e-1 21 Click to see details
GSE19350 CNS germ cell tumors -0.106 3.7e-1 -0.322 1.5e-1 12 Click to see details
GSE14794 Lymphoblastoid cells -0.034 3.8e-1 -0.034 3.8e-1 90 Click to see details
GSE34608 Pulmonary tuberculosis and sarcoidosis 0.071 3.8e-1 -0.284 1.1e-1 20 Click to see details
GSE19783 ER+ ER+ breast cancer -0.059 4.0e-1 -0.125 3.0e-1 20 Click to see details
GSE28544 Breast cancer 0.026 4.5e-1 0.177 2.0e-1 24 Click to see details
GSE27834 Pluripotent stem cells -0.006 4.9e-1 -0.106 3.5e-1 16 Click to see details
GSE27834 Pluripotent stem cells -0.006 4.9e-1 -0.106 3.5e-1 16 Click to see details
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
STAD 0.497 0 0.455 0 32 Click to see details
PRAD 0.333 0.01 0.251 0.04 50 Click to see details
BLCA 0.537 0.01 0.517 0.01 18 Click to see details
BRCA -0.225 0.02 -0.209 0.03 84 Click to see details
KIRC -0.222 0.03 -0.149 0.11 68 Click to see details
PAAD -0.876 0.06 -0.200 0.4 4 Click to see details
HNSC 0.234 0.07 0.233 0.07 42 Click to see details
LUAD 0.38 0.11 0.245 0.22 12 Click to see details
LIHC 0.17 0.12 0.178 0.11 49 Click to see details
COAD 0.438 0.14 0.238 0.29 8 Click to see details
PCPG -0.897 0.15 -1.000 0.5 3 Click to see details
KIRP 0.143 0.22 0.163 0.19 32 Click to see details
UCEC 0.121 0.31 0.121 0.31 19 Click to see details
KICH -0.1 0.32 0.024 0.45 25 Click to see details
CESC 0.24 0.42 0.500 0.33 3 Click to see details
LUSC 0.029 0.43 0.002 0.5 38 Click to see details
CHOL -0.067 0.43 0.017 0.48 9 Click to see details
ESCA 0.049 0.44 -0.118 0.36 11 Click to see details
THCA -0.013 0.46 -0.060 0.33 59 Click to see details
THCA -0.013 0.46 -0.060 0.33 59 Click to see details
THCA -0.013 0.46 -0.060 0.33 59 Click to see details
MiRNA Regulatory Network:
Functional analysis:
Strong evidence (reporter assay, western blot, qRT-PCR or qPCR) Other evidence
Transcription factor regulation Circular RNA sponge
691 hsa-miR-15a-5p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT000280 BMI1 BMI1 proto-oncogene, polycomb ring finger 5 3
MIRT000282 WNT3A Wnt family member 3A 3 2
MIRT000283 MYB MYB proto-oncogene, transcription factor 5 3
MIRT000284 CDC25A cell division cycle 25A 3 3
MIRT000285 CCND2 cyclin D2 3 5
MIRT000804 RAB9B RAB9B, member RAS oncogene family 1 1
MIRT000806 ACTR1A ARP1 actin related protein 1 homolog A 1 1
MIRT000808 TPI1 triosephosphate isomerase 1 1 1
MIRT000810 PDCD4 programmed cell death 4 3 2
MIRT000812 RAB21 RAB21, member RAS oncogene family 2 1
MIRT000815 BCL2 BCL2, apoptosis regulator 6 13
MIRT000817 WT1 Wilms tumor 1 2 1
MIRT000819 ASXL2 additional sex combs like 2, transcriptional regulator 2 1
MIRT000823 TMEM251 transmembrane protein 251 2 1
MIRT000825 CARD8 caspase recruitment domain family member 8 2 1
MIRT000827 CDC14B cell division cycle 14B 2 1
MIRT000829 CENPJ centromere protein J 2 1
MIRT000831 CEP63 centrosomal protein 63 2 1
MIRT000833 CREBL2 cAMP responsive element binding protein like 2 3 3
MIRT000835 ECHDC1 ethylmalonyl-CoA decarboxylase 1 2 1
MIRT000847 GOLGA5 golgin A5 2 1
MIRT000849 GOLPH3L golgi phosphoprotein 3 like 2 1
MIRT000851 GTF2H1 general transcription factor IIH subunit 1 2 1
MIRT000853 H3F3B H3 histone family member 3B 2 1
MIRT000855 HACE1 HECT domain and ankyrin repeat containing E3 ubiquitin protein ligase 1 2 1
MIRT000857 HDHD2 haloacid dehalogenase like hydrolase domain containing 2 2 1
MIRT000859 HERC6 HECT and RLD domain containing E3 ubiquitin protein ligase family member 6 2 1
MIRT000863 HRSP12 reactive intermediate imine deaminase A homolog 2 1
MIRT000865 HSDL2 hydroxysteroid dehydrogenase like 2 2 1
MIRT000866 HSPA1A heat shock protein family A (Hsp70) member 1A 2 1
MIRT000868 JUN Jun proto-oncogene, AP-1 transcription factor subunit 2 1
MIRT000878 MCL1 MCL1, BCL2 family apoptosis regulator 2 1
MIRT000880 MSH2 mutS homolog 2 2 1
MIRT000884 OMA1 OMA1 zinc metallopeptidase 2 1
MIRT000886 OSGEPL1 O-sialoglycoprotein endopeptidase like 1 2 1
MIRT000888 PDCD6IP programmed cell death 6 interacting protein 2 1
MIRT000890 PHKB phosphorylase kinase regulatory subunit beta 2 1
MIRT000892 PMS1 PMS1 homolog 1, mismatch repair system component 2 1
MIRT000894 PNN pinin, desmosome associated protein 2 1
MIRT000896 PRIM1 DNA primase subunit 1 2 1
MIRT000898 RAD51C RAD51 paralog C 2 1
MIRT000900 RHOT1 ras homolog family member T1 2 1
MIRT000902 RNASEL ribonuclease L 2 1
MIRT000906 SLC35A1 solute carrier family 35 member A1 2 1
MIRT000908 SLC35B3 solute carrier family 35 member B3 2 1
MIRT000910 TIA1 TIA1 cytotoxic granule associated RNA binding protein 2 1
MIRT000914 UGDH UDP-glucose 6-dehydrogenase 2 1
MIRT000916 UGP2 UDP-glucose pyrophosphorylase 2 2 1
MIRT000922 ZNF559 zinc finger protein 559 2 1
MIRT001227 CCND1 cyclin D1 5 7
MIRT001228 CCNE1 cyclin E1 6 8
MIRT001802 BACE1 beta-secretase 1 2 1
MIRT002946 DMTF1 cyclin D binding myb like transcription factor 1 3 3
MIRT003333 BRCA1 BRCA1, DNA repair associated 2 2
MIRT003334 AKT3 AKT serine/threonine kinase 3 2 4
MIRT003872 WIPF1 WAS/WASL interacting protein family member 1 2 1
MIRT003873 VPS45 vacuolar protein sorting 45 homolog 2 1
MIRT003874 HSP90B1 heat shock protein 90 beta family member 1 2 1
MIRT003875 SKAP2 src kinase associated phosphoprotein 2 3 1
MIRT003876 NT5DC1 5'-nucleotidase domain containing 1 2 1
MIRT003877 FAM69A family with sequence similarity 69 member A 2 1
MIRT003878 C2orf74 chromosome 2 open reading frame 74 1 1
MIRT003879 FAM122C family with sequence similarity 122C 2 1
MIRT003880 PWWP2A PWWP domain containing 2A 2 1
MIRT003881 C17orf80 chromosome 17 open reading frame 80 2 1
MIRT003882 CCDC111 primase and DNA directed polymerase 2 1
MIRT003883 C2orf43 lipid droplet associated hydrolase 2 1
MIRT003884 C4orf27 histone PARylation factor 1 2 1
MIRT003885 NIPAL2 NIPA like domain containing 2 2 1
MIRT003886 TRMT13 tRNA methyltransferase 13 homolog 2 1
MIRT003887 ANAPC16 anaphase promoting complex subunit 16 2 1
MIRT003888 CADM1 cell adhesion molecule 1 3 1
MIRT003891 TMEM184B transmembrane protein 184B 2 1
MIRT003899 APP amyloid beta precursor protein 3 2
MIRT004046 UCP2 uncoupling protein 2 3 1
MIRT004275 VEGFA vascular endothelial growth factor A 6 11
MIRT004680 TSPYL2 TSPY like 2 2 1
MIRT004829 NFKB1 nuclear factor kappa B subunit 1 3 1
MIRT005552 CHUK conserved helix-loop-helix ubiquitous kinase 4 1
MIRT005763 TP53 tumor protein p53 1 1
MIRT006027 FGF7 fibroblast growth factor 7 2 1
MIRT006176 CLCN3 chloride voltage-gated channel 3 4 1
MIRT006177 CRKL CRK like proto-oncogene, adaptor protein 5 2
MIRT006181 MN1 MN1 proto-oncogene, transcriptional regulator 4 1
MIRT006658 Ccnd1 cyclin D1 1 1
MIRT006801 HMGA1 high mobility group AT-hook 1 4 2
MIRT006805 HMGA2 high mobility group AT-hook 2 3 1
MIRT006913 IFNG interferon gamma 2 1
MIRT006998 PURA purine rich element binding protein A 2 2
MIRT007090 RECK reversion inducing cysteine rich protein with kazal motifs 3 2
MIRT032077 DLK1 delta like non-canonical Notch ligand 1 2 1
MIRT051311 PLA2G2D phospholipase A2 group IID 1 1
MIRT051312 ACVR1B activin A receptor type 1B 1 1
MIRT051313 IKBKG inhibitor of nuclear factor kappa B kinase subunit gamma 1 1
MIRT051314 GCLM glutamate-cysteine ligase modifier subunit 1 1
MIRT051315 PCF11 PCF11 cleavage and polyadenylation factor subunit 1 1
MIRT051316 HIST1H2BK histone cluster 1 H2B family member k 1 1
MIRT051317 ODC1 ornithine decarboxylase 1 1 1
MIRT051318 CALD1 caldesmon 1 1 1
MIRT051319 RPP30 ribonuclease P/MRP subunit p30 1 1
MIRT051320 ASNSD1 asparagine synthetase domain containing 1 1 1
MIRT051321 CCNYL1 cyclin Y like 1 1 1
MIRT051322 RGPD5 RANBP2-like and GRIP domain containing 5 1 1
MIRT051323 PREB prolactin regulatory element binding 1 1
MIRT051324 PDHX pyruvate dehydrogenase complex component X 1 1
MIRT051325 SNX6 sorting nexin 6 1 1
MIRT051326 CNN3 calponin 3 1 1
MIRT051327 KIF1A kinesin family member 1A 1 1
MIRT051328 NAB1 NGFI-A binding protein 1 1 1
MIRT051329 CCT6B chaperonin containing TCP1 subunit 6B 1 1
MIRT051330 CHD4 chromodomain helicase DNA binding protein 4 1 1
MIRT051331 CLCC1 chloride channel CLIC like 1 1 1
MIRT051332 GDI2 GDP dissociation inhibitor 2 1 1
MIRT051333 BRWD1 bromodomain and WD repeat domain containing 1 1 1
MIRT051334 MAPK6 mitogen-activated protein kinase 6 1 1
MIRT051335 PSMC4 proteasome 26S subunit, ATPase 4 1 1
MIRT051336 ATF2 activating transcription factor 2 1 1
MIRT051337 ATP6AP1 ATPase H+ transporting accessory protein 1 1 1
MIRT051338 FBXO3 F-box protein 3 1 1
MIRT051339 PRDX3 peroxiredoxin 3 1 1
MIRT051340 CABIN1 calcineurin binding protein 1 1 1
MIRT051341 FASN fatty acid synthase 1 3
MIRT051342 SEC63 SEC63 homolog, protein translocation regulator 1 1
MIRT051343 PTAR1 protein prenyltransferase alpha subunit repeat containing 1 1 1
MIRT051344 DSTYK dual serine/threonine and tyrosine protein kinase 1 1
MIRT051345 FOXO1 forkhead box O1 4 2
MIRT051346 TMEM214 transmembrane protein 214 1 1
MIRT051347 TRIM28 tripartite motif containing 28 1 1
MIRT051348 NOP2 NOP2 nucleolar protein 1 1
MIRT051349 MYBL1 MYB proto-oncogene like 1 1 1
MIRT051350 TTC1 tetratricopeptide repeat domain 1 1 1
MIRT051351 BTRC beta-transducin repeat containing E3 ubiquitin protein ligase 1 2
MIRT052930 REPIN1 replication initiator 1 2 1
MIRT053079 KLF4 Kruppel like factor 4 1 1
MIRT054283 YAP1 Yes associated protein 1 3 1
MIRT054424 CARM1 coactivator associated arginine methyltransferase 1 3 1
MIRT054895 SOX5 SRY-box 5 2 1
MIRT055421 SHOC2 SHOC2, leucine rich repeat scaffold protein 1 6
MIRT055811 PLEKHA1 pleckstrin homology domain containing A1 1 1
MIRT057514 CEP55 centrosomal protein 55 1 4
MIRT057729 ZDHHC16 zinc finger DHHC-type containing 16 1 1
MIRT057906 STXBP3 syntaxin binding protein 3 1 1
MIRT061005 C1ORF21 chromosome 1 open reading frame 21 1 3
MIRT061244 AMOTL1 angiomotin like 1 1 6
MIRT061529 BTG2 BTG anti-proliferation factor 2 1 1
MIRT063394 ETNK1 ethanolamine kinase 1 1 1
MIRT065711 TARBP2 TARBP2, RISC loading complex RNA binding subunit 1 2
MIRT066291 MTFR1L mitochondrial fission regulator 1 like 1 1
MIRT066312 USP15 ubiquitin specific peptidase 15 1 1
MIRT068655 AKAP11 A-kinase anchoring protein 11 1 1
MIRT071206 FCF1 FCF1, rRNA-processing protein 1 1
MIRT072822 ARIH1 ariadne RBR E3 ubiquitin protein ligase 1 1 3
MIRT074530 PAGR1 PAXIP1 associated glutamate rich protein 1 1 2
MIRT075249 SNTB2 syntrophin beta 2 1 2
MIRT075273 VPS4A vacuolar protein sorting 4 homolog A 1 4
MIRT075891 C16ORF72 chromosome 16 open reading frame 72 1 4
MIRT076791 GOSR1 golgi SNAP receptor complex member 1 1 1
MIRT077781 MINK1 misshapen like kinase 1 1 1
MIRT078282 RPS6KB1 ribosomal protein S6 kinase B1 1 1
MIRT079655 NAPG NSF attachment protein gamma 1 6
MIRT080011 GALNT1 polypeptide N-acetylgalactosaminyltransferase 1 1 2
MIRT082985 PNPLA6 patatin like phospholipase domain containing 6 1 1
MIRT083265 ZCCHC3 zinc finger CCHC-type containing 3 1 3
MIRT084462 SOWAHC sosondowah ankyrin repeat domain family member C 1 2
MIRT085215 CCNT2 cyclin T2 1 1
MIRT086005 UBR3 ubiquitin protein ligase E3 component n-recognin 3 (putative) 1 1
MIRT087424 ZNRF3 zinc and ring finger 3 1 1
MIRT087554 YWHAH tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein eta 1 1
MIRT088102 SEPT2 septin 2 1 1
MIRT089105 B3GNT2 UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 2 1 2
MIRT089206 ACTR2 ARP2 actin related protein 2 homolog 1 2
MIRT090446 CDV3 CDV3 homolog 1 1
MIRT090688 U2SURP U2 snRNP associated SURP domain containing 1 1
MIRT091667 RARB retinoic acid receptor beta 1 3
MIRT092190 ITPR1 inositol 1,4,5-trisphosphate receptor type 1 1 1
MIRT092209 BHLHE40 basic helix-loop-helix family member e40 1 1
MIRT093682 PI4K2B phosphatidylinositol 4-kinase type 2 beta 1 3
MIRT096234 CANX calnexin 1 1
MIRT098827 PCMT1 protein-L-isoaspartate (D-aspartate) O-methyltransferase 1 1
MIRT099631 E2F3 E2F transcription factor 3 1 1
MIRT100207 PPP1R11 protein phosphatase 1 regulatory inhibitor subunit 11 1 1
MIRT100364 HSPA1B heat shock protein family A (Hsp70) member 1B 2 5
MIRT100566 PIM1 Pim-1 proto-oncogene, serine/threonine kinase 1 1
MIRT100896 CD2AP CD2 associated protein 1 1
MIRT102434 CALU calumenin 1 2
MIRT102632 UBN2 ubinuclein 2 1 6
MIRT102971 EN2 engrailed homeobox 2 1 3
MIRT103092 MAFK MAF bZIP transcription factor K 1 3
MIRT103856 FOXK1 forkhead box K1 1 2
MIRT104015 USP42 ubiquitin specific peptidase 42 1 3
MIRT106292 ZFHX4 zinc finger homeobox 4 1 3
MIRT106733 RAD23B RAD23 homolog B, nucleotide excision repair protein 1 2
MIRT107218 ZBTB34 zinc finger and BTB domain containing 34 1 1
MIRT108983 SLC9A6 solute carrier family 9 member A6 1 1
MIRT109240 ZNF275 zinc finger protein 275 1 1
MIRT110051 OGT O-linked N-acetylglucosamine (GlcNAc) transferase 1 4
MIRT112969 LUZP1 leucine zipper protein 1 1 3
MIRT114923 CHAC1 ChaC glutathione specific gamma-glutamylcyclotransferase 1 1 1
MIRT117655 SCAMP4 secretory carrier membrane protein 4 1 1
MIRT120680 PAK2 p21 (RAC1) activated kinase 2 1 1
MIRT127725 ENTPD1 ectonucleoside triphosphate diphosphohydrolase 1 1 2
MIRT128798 UBE4A ubiquitination factor E4A 1 1
MIRT129055 ARCN1 archain 1 1 1
MIRT130380 PTPRJ protein tyrosine phosphatase, receptor type J 1 1
MIRT131097 TMEM138 transmembrane protein 138 1 1
MIRT132734 RASSF5 Ras association domain family member 5 1 1
MIRT132831 MAPKAPK2 mitogen-activated protein kinase-activated protein kinase 2 1 1
MIRT133334 BCL7A BCL tumor suppressor 7A 1 1
MIRT133769 SKI SKI proto-oncogene 1 2
MIRT137517 RCOR1 REST corepressor 1 1 1
MIRT140146 SPRED1 sprouty related EVH1 domain containing 1 1 2
MIRT140820 SMAD3 SMAD family member 3 1 1
MIRT141243 SCAMP5 secretory carrier membrane protein 5 1 1
MIRT141279 UBE2Q2 ubiquitin conjugating enzyme E2 Q2 1 1
MIRT142237 DCTN5 dynactin subunit 5 1 5
MIRT144019 PSKH1 protein serine kinase H1 1 1
MIRT145377 ANKRD13B ankyrin repeat domain 13B 1 1
MIRT146014 EZH1 enhancer of zeste 1 polycomb repressive complex 2 subunit 1 1
MIRT146351 PNPO pyridoxamine 5'-phosphate oxidase 1 1
MIRT146496 SNX11 sorting nexin 11 1 1
MIRT148302 RNF138 ring finger protein 138 1 1
MIRT150354 IER2 immediate early response 2 1 1
MIRT152274 TNFSF9 TNF superfamily member 9 1 2
MIRT152503 ENTPD6 ectonucleoside triphosphate diphosphohydrolase 6 (putative) 1 1
MIRT152736 KIF3B kinesin family member 3B 1 1
MIRT152922 NOL4L nucleolar protein 4 like 1 1
MIRT154043 RASSF2 Ras association domain family member 2 1 1
MIRT154392 CDS2 CDP-diacylglycerol synthase 2 1 1
MIRT156452 ATP5G3 ATP synthase, H+ transporting, mitochondrial Fo complex subunit C3 (subunit 9) 1 1
MIRT158519 TNRC6B trinucleotide repeat containing 6B 1 3
MIRT158990 EPT1 selenoprotein I 1 1
MIRT159580 PEX13 peroxisomal biogenesis factor 13 1 1
MIRT160169 TET3 tet methylcytosine dioxygenase 3 1 1
MIRT163253 PRKCD protein kinase C delta 1 1
MIRT164260 CPEB2 cytoplasmic polyadenylation element binding protein 2 1 1
MIRT164952 TADA2B transcriptional adaptor 2B 1 1
MIRT165172 GRAMD3 GRAM domain containing 2B 1 2
MIRT165883 CREBRF CREB3 regulatory factor 1 2
MIRT168680 CDKN1A cyclin dependent kinase inhibitor 1A 1 1
MIRT169058 IRF4 interferon regulatory factor 4 1 1
MIRT170136 KLHDC10 kelch domain containing 10 1 1
MIRT170733 UBE3C ubiquitin protein ligase E3C 1 1
MIRT171597 SUN1 Sad1 and UNC84 domain containing 1 1 1
MIRT172813 HMBOX1 homeobox containing 1 1 1
MIRT174781 RNF38 ring finger protein 38 1 1
MIRT175232 PSAT1 phosphoserine aminotransferase 1 1 4
MIRT175524 ZBTB33 zinc finger and BTB domain containing 33 1 1
MIRT179008 PAFAH1B2 platelet activating factor acetylhydrolase 1b catalytic subunit 2 1 1
MIRT180909 RPRD2 regulation of nuclear pre-mRNA domain containing 2 1 4
MIRT186371 PNRC2 proline rich nuclear receptor coactivator 2 1 1
MIRT189760 CDADC1 cytidine and dCMP deaminase domain containing 1 1 1
MIRT189961 AGO4 argonaute 4, RISC catalytic component 1 1
MIRT190184 GPR180 G protein-coupled receptor 180 1 3
MIRT191454 PPM1A protein phosphatase, Mg2+/Mn2+ dependent 1A 1 1
MIRT191625 SLC39A9 solute carrier family 39 member 9 1 3
MIRT194237 FAM103A1 family with sequence similarity 103 member A1 1 3
MIRT194903 RBBP6 RB binding protein 6, ubiquitin ligase 1 4
MIRT196275 PAFAH1B1 platelet activating factor acetylhydrolase 1b regulatory subunit 1 1 1
MIRT196450 TAOK1 TAO kinase 1 1 1
MIRT201456 SNRPB2 small nuclear ribonucleoprotein polypeptide B2 1 4
MIRT204592 HSPE1-MOB4 HSPE1-MOB4 readthrough 1 4
MIRT204623 MOB4 MOB family member 4, phocein 1 4
MIRT204741 BZW1 basic leucine zipper and W2 domains 1 1 6
MIRT206020 NUP50 nucleoporin 50 1 4
MIRT211199 FGF2 fibroblast growth factor 2 1 2
MIRT211314 HSPA4L heat shock protein family A (Hsp70) member 4 like 1 2
MIRT212604 RBPJ recombination signal binding protein for immunoglobulin kappa J region 1 4
MIRT217743 TBPL1 TATA-box binding protein like 1 1 2
MIRT223681 FZD6 frizzled class receptor 6 1 3
MIRT224965 BAG4 BCL2 associated athanogene 4 1 1
MIRT229343 ZNF449 zinc finger protein 449 1 1
MIRT229860 YIPF6 Yip1 domain family member 6 1 1
MIRT230120 DDX3Y DEAD-box helicase 3, Y-linked 1 1
MIRT234342 MSL1 male specific lethal 1 homolog 1 4
MIRT245003 ENTPD7 ectonucleoside triphosphate diphosphohydrolase 7 1 1
MIRT246938 PRRC2C proline rich coiled-coil 2C 1 1
MIRT247095 WEE1 WEE1 G2 checkpoint kinase 1 2
MIRT247236 ELK4 ELK4, ETS transcription factor 1 2
MIRT247368 GABARAPL1 GABA type A receptor associated protein like 1 1 3
MIRT248550 PDIK1L PDLIM1 interacting kinase 1 like 1 1
MIRT248765 ATXN7L3B ataxin 7 like 3B 1 2
MIRT249449 ZNF691 zinc finger protein 691 1 2
MIRT251487 DYNLL2 dynein light chain LC8-type 2 1 2
MIRT255333 SRPRB SRP receptor beta subunit 1 3
MIRT256305 CDC42SE2 CDC42 small effector 2 1 1
MIRT258410 WIPI2 WD repeat domain, phosphoinositide interacting 2