miRTarBase - #MIRT542982 -
pre-miRNA Information
pre-miRNA hsa-mir-122   
Genomic Coordinates chr18: 58451074 - 58451158
Synonyms MIR122A, MIRN122, MIRN122A, hsa-mir-122, miRNA122, miRNA122A, MIR122
Description Homo sapiens miR-122 stem-loop
Comment The mature sequence shown here represents the most commonly cloned form from large-scale cloning studies .
RNA Secondary Structure
Associated Diseases

Mature miRNA Information
Mature miRNA hsa-miR-122-5p
Sequence 15| UGGAGUGUGACAAUGGUGUUUG |36
Evidence Experimental
Experiments Cloned
Editing Events in miRNAs
Modification Type Position on miR Chromosome DNA Strand Genomic Position (hg38) List of PMIDs Variant details
A-to-I 4 18 + 58451091 29233923 link
C-to-U 11 18 + 58451098 28550310 link
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs1258166649 1 dbSNP
rs1426570658 6 dbSNP
Putative Targets

miRNA Expression profile
Human miRNA Tissue Atlas
miRNAs in Extracellular Vesicles

Circulating MicroRNA Expression Profiling
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol ERC1   
Synonyms Cast2, ELKS, ERC-1, RAB6IP2
Description ELKS/RAB6-interacting/CAST family member 1
Transcript NM_178039   
Other Transcripts NM_178040   
Expression
Putative miRNA Targets on ERC1
3'UTR of ERC1
(miRNA target sites are highlighted)
>ERC1|NM_178039|3'UTR
   1 CCCTGCTTTATGGGGAAGCCTGAGGTAGTCAACCCAGGAGCCAAGAAAAGAGAACTACGAGGAACAGGTGCCCGGAACCT
  81 TCTTGGCACCAAACACTACAAACTTCATCCCAACTTGCTCACTTGAAGAAGTGTGATTCCAGCACCGTTTCTACATCTGC
 161 CATCTTACTCTGCCTTTCTGCTTTGGATGTGGTCTCTACACTAACCTTCTTGATGTCCAGGGTAGATAAAGGGTCGAATC
 241 TCTCTGAAGAACTGCCACCTGGTCATCAGCAGTGGAGAACTGTGGGAGCTGGTGGCTCTGCCCTGACAGAGAGCCATGGA
 321 GCAGAGGAGCCTCTCACCTCCTGTCCTCTGACATGAGAATGAAACCAGGAATGGACTTGGAGTTCAACAGGCTGAGAGGA
 401 TGCCTCCAATGGACCAGAGAGCTGAGTGTTCTAATATCACAATAGGTGCTTTCTCCTAAAAGGGCAAAAAACAATCTCAA
 481 AAAGATTAGAAAAAGAGAAGGGGGGAAGGGAAGAGAAAATCGACTCTTCTTTTTACTGTCTCTTCTGCTTACTTTCCACA
 561 TGAGATGCTTTGTACCGGGGAGCTGTGAGCAGGCCTCACGATGGCTTGGGAGCACTCGTTCTCCCAAGGTCTGAGTCTTC
 641 ATCCAGCCCTGCCTGTCTGTCGCAGCCTTCCTCACTCTGTTCCTCGGCCAGTTAACAAGAAGATGGTGTGAGGTGTTCTC
 721 CACCAGTCTCTCCTGTTTGAGACTGTTGACGTTATCATACTGAGGTGTTAGATCAAATATCTCTAATTGAAGAACATGTG
 801 AGGTTGAAAGAGCACCAGCCAGGGCAACATAGCGTGACCCTGTCTCTACAAAAAATTAAAAAGAGAACATACAAAGTTGA
 881 CATATGAGACCCTGTTGTCCCCGCCTGCAGCTTTGCCCCAGTAACAGATGCCCGTTGCTCTTGGGCTGGTTTCCCCTGAA
 961 CACCTCCAAGAGGCTGCCTGCCTTGCCAGCACCCGTGTCCTGAGCTCCTGCAGCCCAGTGGCTGCTGAAGTTGTGATCCC
1041 TCACTCACCCTGCTAGCTTTGCCCTTGACTCGTCTTCTCTGAACCTCAGCCTCGTGCATTGCCTGGAACCTTCTTCTAGC
1121 ATAAATGAAGGTTTTTCCTCCTACACACATTCCTTCCTCGGTTATTTCATTCAGAGAATATTTATGAAATGCCTACTGTG
1201 TGCAAGTCATCCATCCTTGAAAAGGCCACTTCTCAGTGAGGGAGAGATGTAGTGGATTCTGTGAGACATACCTGCTGGAG
1281 TTGAAGCAGTAAATAGCATGTCCTTCCCCTCCCCGATCTTAAGGTGTGTTTTCTAGAAAAGTTCCCTAATGGAATTCATG
1361 AGTTTGGGGGTCTCAGTCACCCGCTTGCCTGTAGGATTCCATTTGATGATTCTGGATTTTTGCTGTTTGTTATTGCCCTT
1441 AGAGGGGCTCTGAGTATCTACTTGTGGGTGGCCATTTCCTGACATCTGCATGTACCTCGTGGAATTCAGCCAGCTTCATG
1521 TTGCAAATCAGAAAGCTGACCCCAAGACTGCAAATCAATGAAGGTATTGGCATTGTTAAGGACGTAGCGTAGACAACAGC
1601 AGTCATAAATAATTAGGCAGGAACTTAACCCAAATCTAGTTCTTTGACCACCTCTACCACCAGAACCCAGCAGACACTCA
1681 CATCTCCTGATAAGAGTTGCTGGACTCGATGTTTTTGTTTTGCATTTTCTCCTCTCCTTCCCCACTTACTCAGAGAATTT
1761 AAAGTCTGTAGAGTCAGCACAGCCCCATCAGTCCAGGAACTTCCCACCACCAGCCCTTGACTGTCCCATTAACTGACATG
1841 GTCAGATTTCCAGCTCCCCCTACTCCCTGCTGTGAAACAATCCCTCTCCCTGTGAGAGGAAACTGTGGAGCGTTTCTTAT
1921 CGAAGGTTAAATGGACTCTGCTCATAAACCTCTTACTGAGATGCTTCCTGATAGCCAGGCTGGCCAGAGAGGGGTGCAGG
2001 GGTTAGATAGTAAGTGGTGGTCGTTTGTGGTCAGTTACCTCAATTCTGTTCATTGCAGTGCCCGTAAACCATGTAGAAAG
2081 CTCCCAGCACTGAAAGGCAGGAGTGTTAGCATCTCGCTTTATCCACCATAACGTAAAGAACTGCGGTGTGATAACAGCCT
2161 TCACGGGGCCACGGTGGAACCAAGACAGCAGGCGAGGCCATGCCTAAACAAGTGGTCTGGCACGGGCACTGGCCAGCTGC
2241 TCTCTCCAAGCAGGTGGCCCAGATCCCACCCACGTGGACTTTCTCATCAGGTGCAGCGCCTGCCACTCTCAGCCACTGGG
2321 TGTGTCACTCTCCTCTTCATCTCAGCATTCTCCATCACTTCCCCTCCAGAAAAACGGATGGAAGGAAGCCCTCTGTGACA
2401 CTGCTTCTGAGAAGAAGCATTTCCGGGACCGATATCATCTGTCTGGTCTCTGTGAACAGCAAGGAATCTTCTTGACCGTT
2481 CTTGGGCACTGGAGGCTGGCTAGGAGTTCAGTAATAAACGTGGCCTTCGTGCTGTAGGGCAGAGTGGATGCAGTTTGTAG
2561 CTTTCAGAGTGTCTCATTGAGTCTAGATCATTGAACCAACACTTAACCAAATGTCCCACTCCCATCACACTAGGACTTGT
2641 CATTCCATGCCCCTCTCCTAGTGGTCATGGTTTCATATGGGCATACAACTGCTACTGAAGTTATATAGCCTTGAAAACTC
2721 AGTGCAGGTTGCCCTTAATTTTCCCCAAACCCCTCCATCGGCAAGTCTAGTTGCCCTTTAGCACCTAAAGATCTGCACCC
2801 CAAACCAATGTCACCATAAAGAGGGCACGAAGAAGAGTGGGTGTGATCCCAACGGGGTTTTGTAACTGAAGAAGCCCAGT
2881 GTGAGCTTCTCATCTTTTCATATACCTCTAACCCCCGGTACTCATTGAATCATTGATGAGGTATCTCAATTGAGATTTGC
2961 AAGGACTTTGATACCATTTGAAATGGAAAAATTTTGAACGGGCTTTAACATGTTTAAGAAATATGGATGGGGCCGGCCAC
3041 AGTGGCTCACGCCTGTAATCCCAGAACTCTGGAAGGCTGAGGCAGGCGGATCACCTGAGATCAGGAGTTCGAGGCCAGCC
3121 TGGCCAAGATGGCAAAAACCCCGACTCTACTAAAAATACAAAATTAGCCAGGCGTGGTGGCGTACGCCTGTAATCCCAGC
3201 TACTCAGGAGGCAGGAGAATCGCTTGAGCCTGGGAGGCAGAGGCTGCGGTGAGCCGAGATCGTGTCACTGCACTCCAGCC
3281 TGGGTGACAGAGACTCCATTTAAAAAAAAAAAAAAAAAATATATATATATATATATATATATATATATGGATGGGAATCA
3361 CCAAATTCATCTCAGCTCTAACCTTTTAACCTTTGTCCTTGCACTTTACAATCTAAAGATCTACCTGTGGCTCTCAGACT
3441 TCCTCACACTTGGGTTTTAGAAATAACTTGTAAAGCAGACTGGACCCAAGGCCGCCTTCAGTGTCAAGAAGGGCATTGTG
3521 ACTTGCCCCTCAATTTCTGTCCATTGAAGTCTGGTTTTCCATGAGGAACTTGCGGGCTCACCCACCCCCAGAGTGAGAGA
3601 AGAGGAAGGCGAAGTCATCACAGACACGGTCTTAGCCACCTGCTGAACTAATCCCTCCGCTATTGAGGGTCAGGGTTGTG
3681 AGGCAACCATCATGTGTCACCCCAAAATATAAATGTTTCTGAGCCGCCCATCCACTGGCATTTGGATTTGCTGCCAGAGT
3761 CCTGTTCCTCCCAGAACCATCCCGCCCTCCTGTTGACCATGTTACTTGAGTGTAGGCCCGGTGTCAAGACCCTCAGAGTC
3841 TTTGAGGAAAGAGCCAAGCAGAGAAGACCGCTGCGTGGAGTGTGACACCACATGGCATTTCTCAAGCCCAGCGGACCCTG
3921 TGTCAGCAAATACCAGTAATTTAACATCTGCTCCTGGCCTCCTCTTCACCTGCCTGGGTTCGGAACTGAGGAGGAAGGAT
4001 GAGAAGAGACTGCAATGCAGCAGGCACCCTCTGCAGAGTGAGGCCGCCCGTCCATCACTGCCAGCCCTGGGCTGCTCAGG
4081 AGGGGACGTGAACCACTCAAAGGAATGTCTTAAAGAGGATCTGGAGTTTCCCCCATGCAAATTAGGGAAGAATTAGGCAA
4161 GAAAAGACATACATTACAGGGAAATCCTTCTGAACAAAATGGCTGTCTTCACCTACTCTTCTTGCAAGAAAAGACATACA
4241 TTACAGGGAAATCCTTCTGAACAAAATGGCTATCTTCACCTACTCTTCAGCAAAAACCGTCTCCAGACTTTTTAGTGTCA
4321 AAAATGTAACCAACTGTCTCCTGATTTTTTCCAATGTGTTTGGCAAGTGCTGTGGCCCTGTTGTAGGTACTTCTCCTGAC
4401 TCTTGGGGGAGAAGTGGTTTTAGGGATTGATTTGGGGGAGCGGGTTTTTGTCCCATCCCACCTCCTCTCTTCTTTCTCTG
4481 CTTGTCGATATTGTCTGTGTGATTCAGAGAATTGGGGCAGTTACATTGTGTCTGTTGTTGAGATTATTAAAAGATTAAAA
4561 CGTAGTTGTAGAAATGAAAAATTAAACAGCTGTGTTTTAAAAATGCAAACCAATATCTTGTTAATAAAGGAATTCAAGCT
4641 ATGGGGCAGCCACACTCCCCTCCTCCCAGGCTGGCATAGGTGGCCCTGGGCTGGCGGCTTAGGAAGCATGGAGCACACTT
4721 AGGGTAGTGCCTGCCTGGGCAAGAGACACCTGCCGAGCAAAAGGAACGAGAATCTGGGGCTCAGAGCCTCGCAGTTGTGC
4801 CAGGATTTTCCTATACATGTTCAGGACCTCTGGGTAGAGGTTTCACAGTTTGTGACCCCATAACCACCCTCACCCGACGT
4881 GGGTTCTAGCTCAGTGTGCCTAATACTGCATGGTAACCTGGGCTTGACCCTGAAGCCCCTGCCTGGCAGGCCACAGGACC
4961 TCTCCTGCCCACTTGGTGCTATCTCTTCCAGTGACCACCCAGCACGGGTGAGCACTGGCCAGCCTGGAGCCTGCAATCCA
5041 GGTGGAACAGACTGTCCTCCATGTCAGTTCCTTCTGGCTTCAGGCCCTCAATTATTTCCCTTTGAGCTTTTTTAGACCCT
5121 AGATCTCCTAGGCCCAGGCTCTCTCTTGACCCCAGAGAAGCCACTGTCAGGAAAGGAAGTGAACCCTACTGAAGCCAGAG
5201 AATTCACCCCGGCCAAAGCAGGCCCTCTGGGTCCAGCCCCTCATTCCACACCACGCCAGTATTGCATCCATCTACTGCAG
5281 CTACACATCCTGAGGGCAGCACCACCCACTCTGGCCTGCTGGCCCATCGCAGGACTAGCCCAGGCACCTGCCGGGCATTG
5361 CAGGATATCCAGTGGGGCCTGTGACTGCTCCCTGATGCGTCAGAAGAGAAGTGTTGCACTTTAGTGGAGGAGCTGAGGAG
5441 CACCTGCCCCCTTGTAGCTTGAGTTCCTTTTGGTAACAGTAGCAGCCTCCATGGTGGTGTCTGGGATGCACGTGCACCCG
5521 CTGCCTTCAGCTGTATGTGTGTGTTCCTGCTGGAGTTGTGTTACTGACAGGATAATGACATTACAAAGAAATTGTGTTAT
5601 ATTCAACTTTGCCTTGATAATTATTGTAAACACTTTGTTCATTTTTTCTTTTTTATTCACAAACTAAATCCACCAGGAAA
5681 TTATAAAGTTATTTAAAAACCGTAAAAAAAAAAAAAAAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions (Predicted by miRanda)
IDDuplex structurePositionScoreMFE
1
miRNA  3' guuugugguaaCAGUGUGAGGu 5'
                     | |||||||| 
Target 5' gctatggggcaGCCACACTCCc 3'
4638 - 4659 147.00 -13.10
2
miRNA  3' guUUGUGGUAACAGUGUGAGGu 5'
            ||| | | |||| |||||| 
Target 5' ttAAC-CAAATGTCCCACTCCc 3'
2603 - 2623 139.00 -16.80
3
miRNA  3' guUUGUGGUAACAG---UGUGAGGu 5'
            :| |:|: ||||   :|||||| 
Target 5' ccGAGATCG-TGTCACTGCACTCCa 3'
3254 - 3277 139.00 -18.80
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN30109033 6 COSMIC
COSN30514761 14 COSMIC
COSN30137200 31 COSMIC
COSN30145715 51 COSMIC
COSN30150926 76 COSMIC
COSN31526994 131 COSMIC
COSN30103633 142 COSMIC
COSN30543405 148 COSMIC
COSN31586241 166 COSMIC
COSN22300407 310 COSMIC
COSN1564988 638 COSMIC
COSN31959580 686 COSMIC
COSN24769542 835 COSMIC
COSN28065189 1294 COSMIC
COSN20109051 1371 COSMIC
COSN17038035 1384 COSMIC
COSN22252936 1593 COSMIC
COSN8703124 2011 COSMIC
COSN5936831 2479 COSMIC
COSN7319595 2542 COSMIC
COSN23891701 3194 COSMIC
COSN20109055 3418 COSMIC
COSN25094794 3494 COSMIC
COSN1564995 3964 COSMIC
COSN10102188 4050 COSMIC
COSN7319599 4147 COSMIC
COSN16032760 4600 COSMIC
COSN8703134 5293 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs139259435 3 dbSNP
rs760419095 8 dbSNP
rs1467191819 11 dbSNP
rs1003651501 12 dbSNP
rs562582186 13 dbSNP
rs1403836551 14 dbSNP
rs761224968 20 dbSNP
rs1321576224 25 dbSNP
rs764662236 26 dbSNP
rs750374563 37 dbSNP
rs532918833 42 dbSNP
rs1173446165 43 dbSNP
rs754454663 44 dbSNP
rs1460476114 53 dbSNP
rs1285250748 57 dbSNP
rs1224095002 59 dbSNP
rs1339799574 60 dbSNP
rs932661629 63 dbSNP
rs892598764 69 dbSNP
rs866579163 73 dbSNP
rs1432649799 75 dbSNP
rs1050759026 80 dbSNP
rs1345493963 87 dbSNP
rs1333168580 91 dbSNP
rs890412024 95 dbSNP
rs544979308 96 dbSNP
rs1430852305 108 dbSNP
rs559937924 114 dbSNP
rs1477186012 119 dbSNP
rs1423570016 121 dbSNP
rs1036155864 132 dbSNP
rs1185221467 136 dbSNP
rs1487093673 144 dbSNP
rs138893117 147 dbSNP
rs537486726 148 dbSNP
rs1460127567 163 dbSNP
rs994515824 165 dbSNP
rs1265190852 179 dbSNP
rs975041590 198 dbSNP
rs1027386508 200 dbSNP
rs1029324438 201 dbSNP
rs894133818 223 dbSNP
rs547325168 232 dbSNP
rs955107912 236 dbSNP
rs1012572868 237 dbSNP
rs982968541 238 dbSNP
rs1283357137 241 dbSNP
rs1450060555 243 dbSNP
rs908301432 255 dbSNP
rs1337810734 257 dbSNP
rs1024977426 267 dbSNP
rs1352256626 277 dbSNP
rs1394847631 278 dbSNP
rs1430790849 283 dbSNP
rs941169501 284 dbSNP
rs971634303 287 dbSNP
rs1220566255 295 dbSNP
rs1443115527 301 dbSNP
rs11837825 303 dbSNP
rs1204470736 308 dbSNP
rs948654278 309 dbSNP
rs1045067338 312 dbSNP
rs1204053062 318 dbSNP
rs1206594835 323 dbSNP
rs1307971687 327 dbSNP
rs906560664 337 dbSNP
rs529531128 347 dbSNP
rs957545080 353 dbSNP
rs990213983 357 dbSNP
rs892553480 358 dbSNP
rs376803249 371 dbSNP
rs1482223425 372 dbSNP
rs369682789 376 dbSNP
rs7305100 378 dbSNP
rs1299356422 380 dbSNP
rs1262383512 387 dbSNP
rs986858584 388 dbSNP
rs900091756 393 dbSNP
rs1163447311 397 dbSNP
rs912554006 403 dbSNP
rs748087574 410 dbSNP
rs149392771 411 dbSNP
rs982488901 414 dbSNP
rs539590926 415 dbSNP
rs758478423 425 dbSNP
rs962501793 432 dbSNP
rs1048791004 440 dbSNP
rs558131089 443 dbSNP
rs1220152814 446 dbSNP
rs566531581 447 dbSNP
rs894271067 450 dbSNP
rs1464883354 456 dbSNP
rs1013085581 458 dbSNP
rs1292202997 464 dbSNP
rs1302725647 475 dbSNP
rs1045370154 481 dbSNP
rs906877764 486 dbSNP
rs999094260 490 dbSNP
rs1032362031 493 dbSNP
rs957512652 495 dbSNP
rs1391480738 500 dbSNP
rs981326709 500 dbSNP
rs928553727 501 dbSNP
rs1403619647 502 dbSNP
rs1367900396 503 dbSNP
rs144741184 504 dbSNP
rs1453445209 505 dbSNP
rs1028408112 506 dbSNP
rs954069382 508 dbSNP
rs1161481102 514 dbSNP
rs1268253310 521 dbSNP
rs549594505 522 dbSNP
rs912534539 523 dbSNP
rs1269465259 524 dbSNP
rs548787545 525 dbSNP
rs961692414 527 dbSNP
rs1484739418 536 dbSNP
rs971994321 539 dbSNP
rs138366367 543 dbSNP
rs11061780 545 dbSNP
rs1311160626 560 dbSNP
rs930477975 565 dbSNP
rs900040857 568 dbSNP
rs996984357 569 dbSNP
rs746850937 577 dbSNP
rs73601987 578 dbSNP
rs1490401596 580 dbSNP
rs1290914756 581 dbSNP
rs1454482366 584 dbSNP
rs948470124 585 dbSNP
rs1428730560 588 dbSNP
rs1004254511 593 dbSNP
rs116475124 594 dbSNP
rs577663884 601 dbSNP
rs1431743588 605 dbSNP
rs1192293281 614 dbSNP
rs1426583581 618 dbSNP
rs749323199 619 dbSNP
rs998955850 626 dbSNP
rs868847560 649 dbSNP
rs866044691 650 dbSNP
rs1460578613 652 dbSNP
rs1422125431 655 dbSNP
rs1053356494 660 dbSNP
rs117418530 662 dbSNP
rs78680208 663 dbSNP
rs1028458909 675 dbSNP
rs1227338152 676 dbSNP
rs1325098905 678 dbSNP
rs1295459178 682 dbSNP
rs1383086319 684 dbSNP
rs954365695 686 dbSNP
rs768567950 687 dbSNP
rs1307533120 690 dbSNP
rs1008287933 694 dbSNP
rs1470998244 705 dbSNP
rs73037322 706 dbSNP
rs956016005 709 dbSNP
rs961396096 716 dbSNP
rs1374627755 721 dbSNP
rs1193675746 722 dbSNP
rs1359470110 731 dbSNP
rs773538809 746 dbSNP
rs147240624 751 dbSNP
rs776768179 752 dbSNP
rs1487991526 755 dbSNP
rs79833769 765 dbSNP
rs1271654717 769 dbSNP
rs1195770842 773 dbSNP
rs921368230 779 dbSNP
rs1229615538 780 dbSNP
rs915722759 781 dbSNP
rs1382403743 783 dbSNP
rs753450219 788 dbSNP
rs1239222138 790 dbSNP
rs1313270409 798 dbSNP
rs1454766286 802 dbSNP
rs932784648 804 dbSNP
rs764845688 813 dbSNP
rs948584089 818 dbSNP
rs981201240 825 dbSNP
rs562343814 834 dbSNP
rs928406116 835 dbSNP
rs11610729 836 dbSNP
rs551146918 837 dbSNP
rs1167009144 841 dbSNP
rs1444832574 842 dbSNP
rs569399524 846 dbSNP
rs762466621 850 dbSNP
rs1037089565 852 dbSNP
rs1438983361 858 dbSNP
rs1457650136 862 dbSNP
rs947588291 864 dbSNP
rs1206489293 882 dbSNP
rs1359241792 886 dbSNP
rs1290010145 888 dbSNP
rs1248499662 889 dbSNP
rs533420866 898 dbSNP
rs1357365171 900 dbSNP
rs551595732 901 dbSNP
rs566495434 903 dbSNP
rs73601993 904 dbSNP
rs889940433 916 dbSNP
rs1444331690 917 dbSNP
rs559729414 918 dbSNP
rs1019695008 919 dbSNP
rs567213863 921 dbSNP
rs115867115 923 dbSNP
rs1026914697 934 dbSNP
rs952733316 935 dbSNP
rs1002698839 942 dbSNP
rs1156378823 946 dbSNP
rs1470914655 950 dbSNP
rs1363858104 951 dbSNP
rs1183593457 959 dbSNP
rs1035568313 964 dbSNP
rs1267337203 965 dbSNP
rs1225219971 969 dbSNP
rs1320719992 995 dbSNP
rs984655002 996 dbSNP
rs1259626467 1003 dbSNP
rs1459334087 1005 dbSNP
rs765952540 1008 dbSNP
rs1222939982 1009 dbSNP
rs1022866606 1012 dbSNP
rs969908048 1018 dbSNP
rs1304817423 1019 dbSNP
rs1436935180 1021 dbSNP
rs1197162141 1025 dbSNP
rs988777741 1040 dbSNP
rs1238035724 1041 dbSNP
rs1402059668 1042 dbSNP
rs1473452741 1049 dbSNP
rs1175131994 1056 dbSNP
rs1021968655 1062 dbSNP
rs981720562 1066 dbSNP
rs979419143 1070 dbSNP
rs1478600674 1072 dbSNP
rs1241879519 1073 dbSNP
rs1213979386 1083 dbSNP
rs111549453 1094 dbSNP
rs1268948953 1098 dbSNP
rs1203125918 1107 dbSNP
rs375796151 1110 dbSNP
rs1171586665 1123 dbSNP
rs1285184093 1123 dbSNP
rs1361068175 1132 dbSNP
rs934370911 1134 dbSNP
rs777876216 1141 dbSNP
rs986908975 1142 dbSNP
rs181324316 1143 dbSNP
rs940193617 1148 dbSNP
rs142217717 1152 dbSNP
rs1330502604 1153 dbSNP
rs1359657724 1154 dbSNP
rs553924013 1160 dbSNP
rs1049990531 1161 dbSNP
rs890074500 1165 dbSNP
rs1248884224 1169 dbSNP
rs1183218342 1170 dbSNP
rs1460080614 1173 dbSNP
rs944307595 1176 dbSNP
rs780264030 1177 dbSNP
rs185592647 1194 dbSNP
rs1218733605 1199 dbSNP
rs1216128466 1200 dbSNP
rs1279637428 1201 dbSNP
rs1002662915 1206 dbSNP
rs542632756 1213 dbSNP
rs1315689936 1222 dbSNP
rs1217181103 1236 dbSNP
rs1384423931 1240 dbSNP
rs1302886669 1241 dbSNP
rs1440768370 1245 dbSNP
rs560907975 1250 dbSNP
rs116289408 1252 dbSNP
rs1010486588 1253 dbSNP
rs1236250766 1272 dbSNP
rs1482932380 1273 dbSNP
rs1021518005 1282 dbSNP
rs888435323 1288 dbSNP
rs1012236130 1294 dbSNP
rs1194480582 1303 dbSNP
rs1245150576 1304 dbSNP
rs150787670 1307 dbSNP
rs1480319155 1308 dbSNP
rs979386525 1315 dbSNP
rs1476996826 1316 dbSNP
rs1028302033 1324 dbSNP
rs563059986 1329 dbSNP
rs1290734981 1330 dbSNP
rs533378262 1332 dbSNP
rs556742682 1335 dbSNP
rs551823956 1337 dbSNP
rs1425657007 1342 dbSNP
rs139156600 1347 dbSNP
rs1312914596 1349 dbSNP
rs1222710284 1359 dbSNP
rs1332057152 1360 dbSNP
rs113427953 1366 dbSNP
rs200780906 1366 dbSNP
rs398116015 1366 dbSNP
rs1412193749 1367 dbSNP
rs1371600232 1368 dbSNP
rs1400011291 1368 dbSNP
rs201455680 1371 dbSNP
rs398116016 1372 dbSNP
rs61912169 1372 dbSNP
rs1035900988 1377 dbSNP
rs866253359 1381 dbSNP
rs1370435632 1382 dbSNP
rs1165669633 1383 dbSNP
rs988539650 1384 dbSNP
rs973325953 1386 dbSNP
rs1184321317 1390 dbSNP
rs1399068019 1405 dbSNP
rs920177027 1416 dbSNP
rs1219991662 1436 dbSNP
rs1490760089 1442 dbSNP
rs768932218 1449 dbSNP
rs1237859389 1451 dbSNP
rs1269951442 1456 dbSNP
rs931576987 1463 dbSNP
rs149924325 1467 dbSNP
rs968372542 1469 dbSNP
rs1351665495 1471 dbSNP
rs1283143904 1472 dbSNP
rs1403500234 1474 dbSNP
rs905561891 1475 dbSNP
rs938334899 1484 dbSNP
rs1056843310 1487 dbSNP
rs1347868853 1489 dbSNP
rs1453297758 1491 dbSNP
rs1343554866 1492 dbSNP
rs1161504527 1495 dbSNP
rs1472931432 1496 dbSNP
rs377208190 1497 dbSNP
rs1217432398 1499 dbSNP
rs985086929 1500 dbSNP
rs910899751 1505 dbSNP
rs1197185128 1509 dbSNP
rs1434745479 1510 dbSNP
rs1267759228 1515 dbSNP
rs891555935 1521 dbSNP
rs1484705655 1532 dbSNP
rs1262068108 1535 dbSNP
rs944260942 1537 dbSNP
rs1265479323 1553 dbSNP
rs567324770 1554 dbSNP
rs754380164 1559 dbSNP
rs1322133899 1564 dbSNP
rs1193156705 1573 dbSNP
rs1263137801 1574 dbSNP
rs1010041119 1580 dbSNP
rs1064125 1583 dbSNP
rs144963601 1584 dbSNP
rs549819846 1585 dbSNP
rs888568962 1589 dbSNP
rs571390794 1590 dbSNP
rs996085774 1594 dbSNP
rs1028877817 1598 dbSNP
rs1467491146 1602 dbSNP
rs1378090025 1603 dbSNP
rs1045436832 1605 dbSNP
rs1426455299 1606 dbSNP
rs906546994 1612 dbSNP
rs1008664921 1614 dbSNP
rs1460537220 1616 dbSNP
rs1019668829 1621 dbSNP
rs4766374 1629 dbSNP
rs1035633491 1630 dbSNP
rs955842507 1632 dbSNP
rs1439038769 1639 dbSNP
rs761046706 1649 dbSNP
rs972907989 1659 dbSNP
rs1021471970 1661 dbSNP
rs1241568729 1663 dbSNP
rs1288811120 1685 dbSNP
rs920130399 1696 dbSNP
rs554040654 1701 dbSNP
rs952933062 1702 dbSNP
rs1334823414 1704 dbSNP
rs968424902 1705 dbSNP
rs985241980 1706 dbSNP
rs980315065 1708 dbSNP
rs139857384 1709 dbSNP
rs938303595 1710 dbSNP
rs1057212719 1719 dbSNP
rs188391240 1721 dbSNP
rs777122936 1722 dbSNP
rs1290786942 1726 dbSNP
rs554559341 1733 dbSNP
rs1240840381 1735 dbSNP
rs977395599 1740 dbSNP
rs1257565512 1747 dbSNP
rs1453597709 1748 dbSNP
rs918874322 1750 dbSNP
rs1229542139 1752 dbSNP
rs930141018 1752 dbSNP
rs1196473382 1753 dbSNP
rs1282582481 1762 dbSNP
rs1048504696 1765 dbSNP
rs1252185840 1768 dbSNP
rs1341141766 1769 dbSNP
rs1328169258 1770 dbSNP
rs575960127 1771 dbSNP
rs1389586067 1772 dbSNP
rs1372227084 1778 dbSNP
rs11829753 1784 dbSNP
rs1423709887 1793 dbSNP
rs1383020619 1794 dbSNP
rs1180374985 1815 dbSNP
rs948110613 1841 dbSNP
rs1362685559 1846 dbSNP
rs1045170279 1862 dbSNP
rs73601998 1864 dbSNP
rs1254529063 1865 dbSNP
rs1206326867 1870 dbSNP
rs1490268996 1879 dbSNP
rs1163396047 1881 dbSNP
rs1392429687 1884 dbSNP
rs995971018 1887 dbSNP
rs1003573529 1890 dbSNP
rs1279007340 1891 dbSNP
rs372970441 1899 dbSNP
rs1050283273 1904 dbSNP
rs1057417477 1910 dbSNP
rs1352281748 1912 dbSNP
rs891679145 1913 dbSNP
rs1321964841 1922 dbSNP
rs1363467843 1923 dbSNP
rs540538913 1933 dbSNP
rs1325170512 1935 dbSNP
rs1405560013 1938 dbSNP
rs1394144279 1939 dbSNP
rs578218270 1942 dbSNP
rs180796373 1943 dbSNP
rs1375343846 1945 dbSNP
rs968561354 1946 dbSNP
rs1183524102 1953 dbSNP
rs1020057464 1958 dbSNP
rs1238402975 1959 dbSNP
rs1245325145 1970 dbSNP
rs1201335442 1992 dbSNP
rs752206677 1993 dbSNP
rs961481923 1995 dbSNP
rs1283769511 1997 dbSNP
rs1206919162 2008 dbSNP
rs994694533 2012 dbSNP
rs952817081 2015 dbSNP
rs1208333262 2017 dbSNP
rs980284201 2019 dbSNP
rs1272806775 2023 dbSNP
rs372871613 2024 dbSNP
rs960596184 2025 dbSNP
rs560361526 2028 dbSNP
rs754759929 2035 dbSNP
rs1160619741 2039 dbSNP
rs114190350 2063 dbSNP
rs945806310 2064 dbSNP
rs1187603555 2065 dbSNP
rs1478527785 2072 dbSNP
rs1369747781 2073 dbSNP
rs1471537035 2081 dbSNP
rs1186907192 2085 dbSNP
rs1466357724 2088 dbSNP
rs1162238522 2090 dbSNP
rs1248688467 2092 dbSNP
rs1203070455 2098 dbSNP
rs976485767 2099 dbSNP
rs1310389960 2100 dbSNP
rs1280571755 2105 dbSNP
rs1025266751 2108 dbSNP
rs1338497748 2109 dbSNP
rs1295019362 2113 dbSNP
rs187374016 2117 dbSNP
rs764055928 2118 dbSNP
rs1333856502 2123 dbSNP
rs984350496 2129 dbSNP
rs931789217 2130 dbSNP
rs1050251614 2133 dbSNP
rs780208064 2134 dbSNP
rs1415470106 2136 dbSNP
rs11061781 2145 dbSNP
rs531628149 2146 dbSNP
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rs1183077905 2157 dbSNP
rs1482277346 2160 dbSNP
rs897113358 2165 dbSNP
rs3741977 2166 dbSNP
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rs780843791 2173 dbSNP
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rs750269280 2193 dbSNP
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rs1305172412 2198 dbSNP
rs192270444 2215 dbSNP
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rs779126639 2224 dbSNP
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rs1416021806 2243 dbSNP
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rs59027092 2258 dbSNP
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rs536315199 2298 dbSNP
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rs1192110516 2655 dbSNP
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rs565329936 2665 dbSNP
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rs576134346 2761 dbSNP
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rs1021139127 2815 dbSNP
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rs1469002605 2888 dbSNP
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rs570435717 3000 dbSNP
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rs1000931022 3012 dbSNP
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rs1374261807 3310 dbSNP
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rs1323835694 3438 dbSNP
rs1417510313 3444 dbSNP
rs1252796618 3446 dbSNP
rs1199282262 3455 dbSNP
rs1350797093 3468 dbSNP
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rs1215406119 3477 dbSNP
rs1356749594 3478 dbSNP
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rs1443576810 3488 dbSNP
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rs139047555 3495 dbSNP
rs182805884 3500 dbSNP
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rs1251106011 3570 dbSNP
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rs777687233 3574 dbSNP
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rs1209673127 3655 dbSNP
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rs1299132715 3693 dbSNP
rs924686266 3701 dbSNP
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rs534296256 3711 dbSNP
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rs1055446759 4328 dbSNP
rs1452648782 4332 dbSNP
rs577409315 4334 dbSNP
rs535172856 4336 dbSNP
rs1013516385 4342 dbSNP
rs1024784308 4355 dbSNP
rs893735514 4384 dbSNP
rs902365187 4388 dbSNP
rs1467946363 4391 dbSNP
rs561145913 4393 dbSNP
rs1287359981 4398 dbSNP
rs1211356064 4400 dbSNP
rs1011517894 4406 dbSNP
rs1387138995 4407 dbSNP
rs553361014 4409 dbSNP
rs1355200894 4410 dbSNP
rs758599674 4418 dbSNP
rs79310628 4428 dbSNP
rs957940980 4435 dbSNP
rs1448202326 4436 dbSNP
rs974395696 4442 dbSNP
rs1029084797 4443 dbSNP
rs1391777841 4458 dbSNP
rs1232923140 4462 dbSNP
rs565206045 4468 dbSNP
rs1418047808 4474 dbSNP
rs1382285188 4479 dbSNP
rs954932647 4485 dbSNP
rs1236366856 4488 dbSNP
rs866656330 4489 dbSNP
rs764400092 4492 dbSNP
rs1259813273 4496 dbSNP
rs1200817002 4505 dbSNP
rs987703591 4508 dbSNP
rs1260665192 4512 dbSNP
rs1214028518 4533 dbSNP
rs559434841 4533 dbSNP
rs574900117 4533 dbSNP
rs908033592 4538 dbSNP
rs750937000 4541 dbSNP
rs1286110033 4543 dbSNP
rs1232847148 4554 dbSNP
rs201394561 4558 dbSNP
rs539474827 4560 dbSNP
rs1214774468 4562 dbSNP
rs1235953489 4562 dbSNP
rs983633132 4563 dbSNP
rs11061782 4572 dbSNP
rs189019271 4573 dbSNP
rs963648670 4579 dbSNP
rs1193064288 4582 dbSNP
rs920728524 4591 dbSNP
rs1434179845 4594 dbSNP
rs916264888 4595 dbSNP
rs937423066 4600 dbSNP
rs1157105501 4615 dbSNP
rs949088007 4616 dbSNP
rs982228124 4617 dbSNP
rs1055762484 4618 dbSNP
rs1166914562 4642 dbSNP
rs923729560 4646 dbSNP
rs935135347 4649 dbSNP
rs1202741898 4657 dbSNP
rs773751607 4658 dbSNP
rs1053578116 4659 dbSNP
rs758468856 4660 dbSNP
rs1217170119 4670 dbSNP
rs111939912 4672 dbSNP
rs1279040125 4688 dbSNP
rs1046369570 4696 dbSNP
rs575481462 4697 dbSNP
rs1305840828 4711 dbSNP
rs545966960 4713 dbSNP
rs1030804191 4718 dbSNP
rs1322023760 4721 dbSNP
rs1395610016 4723 dbSNP
rs1168342966 4724 dbSNP
rs1032592937 4726 dbSNP
rs1275496520 4734 dbSNP
rs893523332 4743 dbSNP
rs563984122 4748 dbSNP
rs886552717 4755 dbSNP
rs996344042 4756 dbSNP
rs746362798 4768 dbSNP
rs528126575 4769 dbSNP
rs1016480213 4770 dbSNP
rs954402494 4778 dbSNP
rs115433417 4779 dbSNP
rs1320419699 4783 dbSNP
rs1259053479 4784 dbSNP
rs1015162790 4787 dbSNP
rs962181418 4791 dbSNP
rs539950856 4792 dbSNP
rs920765990 4795 dbSNP
rs1448827020 4812 dbSNP
rs543206659 4814 dbSNP
rs992001654 4818 dbSNP
rs1400810426 4832 dbSNP
rs1166793608 4847 dbSNP
rs1476998576 4848 dbSNP
rs561315061 4851 dbSNP
rs1163731294 4860 dbSNP
rs1415327834 4862 dbSNP
rs1415492964 4869 dbSNP
rs555560687 4876 dbSNP
rs1238155012 4879 dbSNP
rs528907918 4879 dbSNP
rs1046345083 4880 dbSNP
rs923816360 4891 dbSNP
rs1459451397 4895 dbSNP
rs935244603 4896 dbSNP
rs989266936 4902 dbSNP
rs1292283560 4918 dbSNP
rs915043842 4924 dbSNP
rs1053596918 4947 dbSNP
rs1353106616 4950 dbSNP
rs1307130556 4952 dbSNP
rs550336523 4969 dbSNP
rs1448914750 4972 dbSNP
rs1297146815 4973 dbSNP
rs1355677356 4986 dbSNP
rs1351300509 4988 dbSNP
rs893650804 4995 dbSNP
rs1012822979 4998 dbSNP
rs182455890 5006 dbSNP
rs1159862195 5007 dbSNP
rs1353885806 5007 dbSNP
rs1050630621 5009 dbSNP
rs1409331825 5014 dbSNP
rs1228121653 5017 dbSNP
rs1195931244 5019 dbSNP
rs1487690502 5023 dbSNP
rs749718690 5026 dbSNP
rs1274305590 5027 dbSNP
rs1222631864 5030 dbSNP
rs1488049460 5031 dbSNP
rs1283995520 5035 dbSNP
rs890114164 5037 dbSNP
rs1008554904 5046 dbSNP
rs573622320 5055 dbSNP
rs962232818 5059 dbSNP
rs1250873729 5062 dbSNP
rs1293855684 5076 dbSNP
rs774082591 5084 dbSNP
rs1399015734 5085 dbSNP
rs1486050559 5086 dbSNP
rs541114626 5092 dbSNP
rs1046473 5095 dbSNP
rs1419767434 5095 dbSNP
rs1346344272 5097 dbSNP
rs1175945754 5098 dbSNP
rs1431906849 5098 dbSNP
rs552803119 5099 dbSNP
rs1005004148 5107 dbSNP
rs1477653808 5108 dbSNP
rs1261300061 5112 dbSNP
rs1218941130 5117 dbSNP
rs1488646099 5118 dbSNP
rs1046475 5121 dbSNP
rs1186961689 5122 dbSNP
rs1421537748 5123 dbSNP
rs550566826 5125 dbSNP
rs1301731018 5138 dbSNP
rs1217769264 5140 dbSNP
rs1012434562 5142 dbSNP
rs991575540 5143 dbSNP
rs769623603 5144 dbSNP
rs771498246 5144 dbSNP
rs535086217 5147 dbSNP
rs971474949 5148 dbSNP
rs977385075 5149 dbSNP
rs924620833 5153 dbSNP
rs1300501137 5157 dbSNP
rs1464996915 5166 dbSNP
rs1374533862 5176 dbSNP
rs935240897 5179 dbSNP
rs1177686921 5184 dbSNP
rs1447754730 5185 dbSNP
rs1054139333 5186 dbSNP
rs1364671436 5189 dbSNP
rs1213270713 5191 dbSNP
rs144635612 5192 dbSNP
rs760577827 5199 dbSNP
rs931844345 5201 dbSNP
rs766355502 5211 dbSNP
rs1348593326 5212 dbSNP
rs890161657 5223 dbSNP
rs1263676087 5229 dbSNP
rs1197820798 5231 dbSNP
rs1315810479 5233 dbSNP
rs1213127367 5237 dbSNP
rs1278454724 5239 dbSNP
rs1008608597 5241 dbSNP
rs1339455662 5243 dbSNP
rs776362394 5244 dbSNP
rs1216216567 5245 dbSNP
rs1243587386 5246 dbSNP
rs956382739 5249 dbSNP
rs989153804 5255 dbSNP
rs739971 5256 dbSNP
rs1395628594 5258 dbSNP
rs1455182214 5260 dbSNP
rs995081306 5271 dbSNP
rs1171273370 5276 dbSNP
rs1394067831 5282 dbSNP
rs1425598596 5285 dbSNP
rs1028350466 5293 dbSNP
rs958893664 5297 dbSNP
rs922494435 5299 dbSNP
rs1013463432 5303 dbSNP
rs770386715 5305 dbSNP
rs148476833 5313 dbSNP
rs1239793695 5325 dbSNP
rs1196147426 5329 dbSNP
rs1319904888 5330 dbSNP
rs187089097 5344 dbSNP
rs557114542 5353 dbSNP
rs971443804 5354 dbSNP
rs1375252281 5356 dbSNP
rs1320399237 5370 dbSNP
rs773880088 5376 dbSNP
rs575490467 5377 dbSNP
rs1236550395 5379 dbSNP
rs1392325801 5379 dbSNP
rs1031661159 5391 dbSNP
rs115310621 5392 dbSNP
rs1385972997 5393 dbSNP
rs989407530 5398 dbSNP
rs764155266 5399 dbSNP
rs1344427484 5400 dbSNP
rs1224507123 5402 dbSNP
rs1182308298 5404 dbSNP
rs915183936 5412 dbSNP
rs1450802462 5418 dbSNP
rs11548697 5423 dbSNP
rs1445013136 5428 dbSNP
rs1211301926 5442 dbSNP
rs931917750 5448 dbSNP
rs1045257768 5449 dbSNP
rs1237304736 5450 dbSNP
rs1284699961 5450 dbSNP
rs372168908 5454 dbSNP
rs1352233400 5455 dbSNP
rs985889695 5464 dbSNP
rs1469796140 5467 dbSNP
rs1191176951 5474 dbSNP
rs1240270820 5478 dbSNP
rs1330907426 5479 dbSNP
rs372369240 5482 dbSNP
rs564581809 5487 dbSNP
rs557492111 5507 dbSNP
rs1366415070 5508 dbSNP
rs944434846 5512 dbSNP
rs572717719 5513 dbSNP
rs532033029 5518 dbSNP
rs113121031 5519 dbSNP
rs897475371 5520 dbSNP
rs930339270 5521 dbSNP
rs1399306455 5523 dbSNP
rs1480591398 5530 dbSNP
rs1262012203 5534 dbSNP
rs1213872402 5536 dbSNP
rs1488969843 5537 dbSNP
rs1158945851 5540 dbSNP
rs956352127 5542 dbSNP
rs1443690272 5544 dbSNP
rs539916702 5546 dbSNP
rs1010543466 5548 dbSNP
rs561427089 5561 dbSNP
rs1021987186 5562 dbSNP
rs1225732210 5563 dbSNP
rs1346432828 5568 dbSNP
rs1048724434 5570 dbSNP
rs1277782609 5571 dbSNP
rs1398335516 5573 dbSNP
rs963852413 5577 dbSNP
rs1330531530 5586 dbSNP
rs1413855851 5595 dbSNP
rs1443042776 5596 dbSNP
rs529015057 5596 dbSNP
rs1470092758 5597 dbSNP
rs746247192 5597 dbSNP
rs1191091428 5607 dbSNP
rs894685768 5608 dbSNP
rs1242195990 5625 dbSNP
rs1013182237 5627 dbSNP
rs1024456328 5632 dbSNP
rs1348889569 5632 dbSNP
rs1277086200 5634 dbSNP
rs544187197 5634 dbSNP
rs1227519090 5637 dbSNP
rs975650601 5638 dbSNP
rs1324744762 5642 dbSNP
rs562392419 5643 dbSNP
rs1336699152 5649 dbSNP
rs1211699566 5650 dbSNP
rs1341668075 5662 dbSNP
rs955390287 5665 dbSNP
rs1447380404 5670 dbSNP
rs761997704 5677 dbSNP
rs1266593182 5685 dbSNP
rs1453219501 5687 dbSNP
rs141752637 5689 dbSNP
rs1168187573 5696 dbSNP
rs1466872997 5700 dbSNP
rs998929222 5702 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions HEK293
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... PAR-CLIP data was present in GSM714646. RNA binding protein: AGO2. Condition:mildMNase, repA ...

- Kishore S; Jaskiewicz L; Burger L; Hausser et al., 2011, Nature methods.

miRNA-target interactions (Provided by authors)
IDDuplex structurePosition
1
miRNA  3' guuugUGGUAACAG---UGUGAGGu 5'
               |:|: ||||   :|||||| 
Target 5' -----AUCG-UGUCACUGCACUCCa 3'
1 - 19
Article - Kishore S; Jaskiewicz L; Burger L; Hausser et al.
- Nature methods, 2011
Cross-linking and immunoprecipitation (CLIP) is increasingly used to map transcriptome-wide binding sites of RNA-binding proteins. We developed a method for CLIP data analysis, and applied it to compare CLIP with photoactivatable ribonucleoside-enhanced CLIP (PAR-CLIP) and to uncover how differences in cross-linking and ribonuclease digestion affect the identified sites. We found only small differences in accuracies of these methods in identifying binding sites of HuR, which binds low-complexity sequences, and Argonaute 2, which has a complex binding specificity. We found that cross-link-induced mutations led to single-nucleotide resolution for both PAR-CLIP and CLIP. Our results confirm the expectation from original CLIP publications that RNA-binding proteins do not protect their binding sites sufficiently under the denaturing conditions used during the CLIP procedure, and we show that extensive digestion with sequence-specific RNases strongly biases the recovered binding sites. This bias can be substantially reduced by milder nuclease digestion conditions.
LinkOut: [PMID: 21572407]
CLIP-seq Support 1 for dataset GSM714646
Method / RBP PAR-CLIP / AGO2
Cell line / Condition HEK293 / mildMNase, repA
Location of target site ENST00000355446.5 | 3UTR | AUCGUGUCACUGCACUCCAGCCUGGG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 21572407 / GSE28865
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
MiRNA-Target Expression Profile (TCGA)
MiRNA Regulatory Network:
Functional analysis:
Strong evidence (reporter assay, western blot, qRT-PCR or qPCR) Other evidence
Transcription factor regulation Circular RNA sponge
534 hsa-miR-122-5p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT000012 CYP7A1 cytochrome P450 family 7 subfamily A member 1 3 1
MIRT000364 IGF1R insulin like growth factor 1 receptor 4 3
MIRT000365 SRF serum response factor 4 1
MIRT000663 RAC1 Rac family small GTPase 1 5 2
MIRT000717 RHOA ras homolog family member A 2 2
MIRT003006 CCNG1 cyclin G1 4 4
MIRT003079 GTF2B general transcription factor IIB 2 1
MIRT003080 GYS1 glycogen synthase 1 4 2
MIRT003081 ANK2 ankyrin 2 3 1
MIRT003082 NFATC2IP nuclear factor of activated T-cells 2 interacting protein 3 1
MIRT003083 ENTPD4 ectonucleoside triphosphate diphosphohydrolase 4 3 1
MIRT003084 ANXA11 annexin A11 4 2
MIRT003085 ALDOA aldolase, fructose-bisphosphate A 3 2
MIRT003086 RAB6B RAB6B, member RAS oncogene family 3 1
MIRT003087 RAB11FIP1 RAB11 family interacting protein 1 4 2
MIRT003088 FOXP1 forkhead box P1 3 1
MIRT003089 MECP2 methyl-CpG binding protein 2 3 2
MIRT003090 NCAM1 neural cell adhesion molecule 1 4 3
MIRT003091 UBAP2 ubiquitin associated protein 2 3 1
MIRT003092 TBX19 T-box 19 3 1