miRTarBase - #MIRT571926 -
pre-miRNA Information
pre-miRNA hsa-mir-15a   
Genomic Coordinates chr13: 50049119 - 50049201
Synonyms MIRN15A, hsa-mir-15a, miRNA15A, MIR15A
Description Homo sapiens miR-15a stem-loop
Comment Reference .
RNA Secondary Structure
Associated Diseases

Mature miRNA Information
Mature miRNA hsa-miR-15a-5p
Sequence 14| UAGCAGCACAUAAUGGUUUGUG |35
Evidence Experimental
Experiments Cloned
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs1355089203 8 dbSNP
rs753467375 11 dbSNP
rs923737993 12 dbSNP
rs766120172 20 dbSNP
rs1359939022 21 dbSNP
Putative Targets

miRNA Expression profile
Human miRNA Tissue Atlas
miRNAs in Extracellular Vesicles

Circulating MicroRNA Expression Profiling
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol LSM11   
Synonyms -
Description LSM11, U7 small nuclear RNA associated
Transcript NM_173491   
Expression
Putative miRNA Targets on LSM11
3'UTR of LSM11
(miRNA target sites are highlighted)
>LSM11|NM_173491|3'UTR
   1 CCAGCTCAGCCTGAGCTTTGGTTTTTAGAAATAAAGTGCATGAATTGCTGCTATGCTGTATCCTAGTATCCCAGTGAAAC
  81 TCTGAGTTGGAATGATTCCCTCTGGTCCTGCATATGCAGAGGACGGAGCAGGCTCAGCCCCCTGGAAGATGAGCTCAAGG
 161 GGAGGACAGGCCTTGGGAGGGCAGGCGTTTGCATTAATATCAAGGCAAAAAGCATTCATAGATACATGCATCTGATTTGG
 241 TATTGTGATTTACTTCAGACCCTGAAACCAAATATCTGATCTTCCATTAGACTTAGGGGTCATGATATGAGTGGAATTTA
 321 CATTTTAGATACTATAGGGGAAAGAAAAGTCTCAAAAAGAAGTATTGCATGTCTAAAAGCTAGTGCCCTGAGTACTCATG
 401 AATTCGATTCCAAGAGTAGTGGTGTAAATTGCCTTGGAGCCCTGCATCCACGTCTTGTAACTAACTTTTGAATTTTGCCT
 481 GACATGATTCTCTCTTGATGAAGAAATGACATATATTATCTTTGAATATCTACAAGGAAAGTTACCAACTTATGTAGGGG
 561 TGAAATTTGGATAGGCGGTATGCTCAAAGCAGCCAGCAATGAGTGCTCTGTTTTGATCCTTCTTCTTATTATGGAAAGGA
 641 GTACAGGACCTCTTCAGTCTTCCCCTTACCAGAGGTAGCCTCTGCAAATGGCATACCAGATGGGACTCTAAGATGCTTGT
 721 GTGGTGGCTTCTTGTCCTTCTCTTTGACTTCTGTGGCATGGTGCTAGTGCATGTACCCTGTGGTATTGCCCCTCTGTCCG
 801 TAGTGTGAACTGTCCTGTGAGCTTTATGTCAGGAGACTGTGACCTTCATGTCCAGCTTCAAAGAGTTGTGCATGAACTCG
 881 GTAATACACATCACACGGCTGAGAGTCCCCTTTCCAGGCAGGGCCAGCATGTGTAGAATATCTTTCAGAATATGGTTTCA
 961 CCATGAAACAGGGGTGGTAGATTTATTCCCTTGTGTCAGGCCAAAGAAGTTCTTACAAAGTACAGTGGGTAGTGTCTAAA
1041 GCGACACTTTACTCACAGCCTGGCTTGAGTCAACAGGAACACCATAGCACCCACAAATACTTCTACTTGAATCATATTCT
1121 GTGCTTTTTCAATCACTAGTGCAGAATAGGCTGCATTTGACACAGACTGTTAGGCAATATTGATTTTTTTGTTTTGTTTT
1201 TATTTGGTTTTATCTGAGATAACTTATGTTCAAGGTGAGAATAAGAAATAGCCAACTAGTTAAAATGTATGAAAAGAAAA
1281 CTTTCCCCTGCTGTATTTGTTGTGTAACATAAATAAGCCTTCTGAGAAGCAGGGTGAATAAAGTTTAGGGAGCTGGGACA
1361 CCTGGTCCTGCTAGCTGGACCACTGGCTCATCATGCAATGAAAAGGTGAGCAGACTTAACCCCTCCGTGCCTCAGCTTTT
1441 TCCCCACAGACACCTACCTCACAGGGGCATTGAGAAAAAAAAAATGAAGGCATTTTACAGTCTCTAAACATCTTTAAGTG
1521 CCATGAGTAATTTTTCCTGACTCTGTTTCATAGCTTTGTAAGAATTCTGTGTCTTTATAAGACACAGAAGCAAGGCAGGT
1601 GCTACATAAAAAAGTAATCTCAGCCAGGCACGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCTGAGGCGGGTGG
1681 ATCACAAGGTCAGGAGATCAAGACCATCCTGGCTAACACGGTGAAACCCTGTCTCTACTAAAAATACAAAAATTAGCCGG
1761 GCGTGGTGGCGGGCGCCTGTAGTCCCAGCTACGTGGGTGGCTGAGGCAGGAGAATGGGGTGAACCCGGGAGGCGGAGCTT
1841 GCAGTGAGCCAAGATTGCACCACTGTACTCCAGCCTGGGCGACAGAGCAAGACTCTGTCTCAAAAAAAGGAAAAAAAAAA
1921 AAAGTAATCTTAGGGTTCATAGTTATGATCCTGTTGTAACTATCTTCGGAAGGCAGCAGTATCTTCTGGAACTTCCATAT
2001 TCCATTCCTTCCTCCTAAGGGACAATGGAAGTTCTCAGAAGAGTATCTTCAGTAAGAGGAGAGTAACTTTTTTTTTGCTG
2081 CTCCCGCTATATCCCAGGCCTCACCCTTTTCTGATCATTATCAGAAAGAATCCCCTGAACTTTTCAAGGGGTTTATATGG
2161 TAGCACCAAATGGAGAATGAGCATCTAAAAATGACACATCCCGAAAGGGCAATCTGTGGAAGTTTGTTGTTTGTTTGTTT
2241 TTATTTTTAAATGCATTGTAAAGTGTACTCTAGAGCCAGATCAGGTGCACTAAAGTTTATAGAGGTTCCAGTTTACAAAC
2321 TCAAGTGAACAGTAATCTTTGGAAGCTGCCAGTCTAAATTCTAAATAGTGTATCTGAAATCTCAGTTCCCAAAATAGTTG
2401 TCAGGTTTAATCATCAGGCAACACTGCGTATACCTGTGTGGCTATCCTCATCTGCCTGCCCTCTCATCCCTCGGCTAGAA
2481 TGATGTACTCTACTTTCCCAATAAGGTAGAAATTTGGAATCCAACGGAATATAATCAGTTTTCATTCATTCCAGTGCCTA
2561 GTTAAATCTAACCTGACTTAAACATATGCCTGTTTTTATGTTTACCTATAATTTTCATATAGCCGTATAAGGATTGATTT
2641 ACCATTTTTTGCCCAACATGACAATTCTGGCTATGAAAATTATGTTTAAACTGTGTATGATCTATTTTATGTGCTCTATG
2721 TTCCCATTTGTTTGTTTGGTCTGGACAGTGGTTCTGGAATGAATTCTATCTAGTAAATTAGTAAATGTGCTGTTTTGTAT
2801 AAAGCATGATAATTACTTTTTAACAGAAGTTCATTTTTAAAGATTACTCCCTTTTCTTTCTCTCTTTTTTTTGAGACAAT
2881 TTCTCTCTTGTTGCCTAGGCAGTGCAGTGGCGCGATCTCAGCTCCCTGCAACTTCTGCCTCCCAGGTTCAAGCGATTCTC
2961 CTGCCTTAGCCTCCTGAGTAGCTGGGTCAGCCACCATGGCTGACTCATTTTTTGTATTTTTAGTAGAGAAGGGGTTTTAC
3041 CGTGTTAGCCAGGCTGGTCTTGAACTCCTGACCTTGGGTGATCCACCTGCCTCAGCCTCCCAAAGTGCTGGGATTACAGG
3121 CGTGAGCTATCCCGCCCGGTCCCCTTTTCTTTATTATCGAAGATATTGTTTAAAAGAAAGAAAAAGTAGGTCCCAATAAT
3201 ATATGTGCTATTCAAAAAATGTGATCATTTAGGACATTATCACAAGTTGCTATGGAAATAACTGAAGACTTCCTCAGGAG
3281 AAGGAAAGAAAATGAGGAACATAATGATAGAGTCGGGGAACTCCCACTAGCTCACCTGAGGGGGGCTCGATGCAGCTGAA
3361 ATACTGAATACTGAAATACTAGAAACCAACAAAACTGGTTTCTAGAATTCTCCAGGGATTTGGGCTTGGGAAACTTGGTA
3441 AGAATAGTTTTTATTTTTGAACATTCAACTTTGGTTCTTCAAAGTAATCTTTAAACATGGGAATATGTTTTCAAGACAAT
3521 TTATAGGACATACTTATGTAGTTGGTGAGGTCTTCTCAAAAGTATCTACCTTTGTTAGATAATAACAAGTGATTAAGAAA
3601 GGGGAGATATGGTTTTATACTCATAACAATTTCCTGTGCCATTCTCTGTACACAGAGGTGATTCATTTACTCTCCCATTA
3681 GTAGAACTTGCACTTTGGGCTGTCTGTTCTAGTATTTGGGAAGTGTTTATGCTTCCTTCCAGGGACCATCTTATGATCAG
3761 AGGCAGGATGTCTGTGAGATGGTTAGCTAGAGTTAGCAGTGTCCGGGGAGAGTGGCTTTAGACCAGTCAGTACCTTGCTC
3841 TTTGTGCATGGTGCATGTCAAGTCAGGAAGCCAAGAAACCGTTGGCATTAAAATCTAGATGCATAGAGATCCTTGCTATG
3921 AGTTGTGGATAGGAGTGGCTCCATCTATCCTTGTGGTGAAAGAGTCCAGGAGCTCCTTTAGAGATTGTCAAGTCCTGAGC
4001 GATGAGCTGCCCTTAATCCTCAGAAGCCTTACAAAAATTGAGATGTACCATTTCTACCCTTTGAGAAAAAAGAAATAGAA
4081 ACTTACTTGATGCAGAATGGATATTTATATTTCTGCTTGCACCATTTCCATAGCAGCTGACAAAGGCAAAATCATGAAAT
4161 AGAATCATTTCTATAAATTGCTTCTTTAAGTTTTCTCTAAATTTTGCCTCTAGGAAAAAATTAAAACTATTCAATGACAG
4241 CTAGCTGTCACTGGTGCTACCCCAAAGCTTTCCAATCTTTTATGTATTTTTTGTGAATGAAACTGTTGCTGTAGGAAAGT
4321 CAAGGTTCATGTAAGAGTATCGTGGTGTAAATATAATGGTTTCACAGCTGTTTGAATTTTTCTTTTCCTGTGCCAGATAT
4401 AGAATGCAGTCAACCCTTTTTCAGTAACTTATGTTCACCAGTCTGTGCTTTTCTTCTCCCAGAAGGCTTTTCTTAGTGGT
4481 TGTAAATGCAAGAATCCTGAGCCCTGTGTTGCAAAGGTGGGTGGTCTGTCAGCACTTTCTGGCAAATTGAGTTGATGGAT
4561 TTAAGATAAGCCTTTGGGGTTCCTGTCAGTTTTCTGGGCCCTGAGGAAGGGTTGGGCCTCCTTTACTCTCAGTATTTTGA
4641 GTGTTTTTCAAATGTTTGTACGTTATCTTGCACTGCTCTAATAAAAATGAAAGCTCTCTGACAAGAAATAGTTCTGGATG
4721 GTTTGAAGATCTGCGGGGAAAAATAAGTGTGCACCTGAGACCTTCAGTTAGTCTTTTATTTATTTAGAATAAAAAATAGT
4801 TTGATAACCTACCAGAGTTAGTGCTTCTTTAAAAACACTCCTTGGAAAGATGGGGACTGTCCCTTAGGAAAGCCATAAAA
4881 GTGATTCCCAATACTTTGCAATTGCTTTTGATTTTTAGTCCTTTGGAACAAATGTGTGATGTTATGTCTGATGTTGTGTT
4961 TTTAGAGCTGTGAAAAGTCTGAAAAATTTCAAGGGGTATTATTTAAATGATGATTATCTGGCTGAATTATGTGTGAGCTA
5041 GAATCTAGGGTAGCTGTCCACTTCTTTTTCTGTTGTCCTGACAGTAAAGCAAATAGTAAGCCATGTCTTGAAAGTGATTT
5121 GCTTGTTTCATACTGACATCTAAAGACATCAGCCTTCTCTTTGGCAACCCTGGGGATACTCCTCTGCACCATAACTTATT
5201 AATGTTTTTTTAGACAAGGCTAAACCTGAATGACTCTACGTATCTATAGTTTCACTGCTCATATACCAGCTGCTACAAGA
5281 AAAACCATGACTTGTAAGTTTGTCTTTACTCCTAATTGCTAAATTAACTGAAACCCTTCCTGTCTAGGGAGAATTGCTGC
5361 TAGTAAGGTCAGTTTGCAATGTTCAGCTTTAGATATGTGTCGTAATGGGAGTCTGAAAACTGTAATAAACTGTATTCATA
5441 TCCTGAAAAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions (Predicted by miRanda)
IDDuplex structurePositionScoreMFE
1
miRNA  3' guGUUUGGUAAUACACGACGAu 5'
            :|| :: || | ||||||| 
Target 5' agTAACTTTTTTTTTGCTGCTc 3'
2062 - 2083 156.00 -8.72
2
miRNA  3' gugUUUG-GUAAUACACGACGAu 5'
             ||:: ||| |  ||||||| 
Target 5' ataAAGTGCATGAATTGCTGCTa 3'
31 - 53 155.00 -12.50
3
miRNA  3' guGUUUGGUAA--UACACGACGAu 5'
            :|||::| |  ||||||||:| 
Target 5' agTAAATTAGTAAATGTGCTGTTt 3'
2772 - 2795 154.00 -15.40
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN7903841 3 COSMIC
COSN22222892 106 COSMIC
COSN14152431 126 COSMIC
COSN30493134 134 COSMIC
COSN26725419 240 COSMIC
COSN31578750 411 COSMIC
COSN26563900 453 COSMIC
COSN29198058 619 COSMIC
COSN31546639 822 COSMIC
COSN31557129 849 COSMIC
COSN26566037 996 COSMIC
COSN26601115 1043 COSMIC
COSN31550524 1088 COSMIC
COSN31515265 1120 COSMIC
COSN20091299 1217 COSMIC
COSN16569098 1338 COSMIC
COSN26553997 1425 COSMIC
COSN27591093 1475 COSMIC
COSN32061297 1924 COSMIC
COSN17911562 2509 COSMIC
COSN21625317 2573 COSMIC
COSN29682581 2873 COSMIC
COSN4917632 2968 COSMIC
COSN9414043 3191 COSMIC
COSN2079805 3478 COSMIC
COSN22552334 3934 COSMIC
COSN25702022 4483 COSMIC
COSN31778435 4819 COSMIC
COSN16664741 4935 COSMIC
COSN29353621 4999 COSMIC
COSN181783 5013 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs1279436038 3 dbSNP
rs1441722753 5 dbSNP
rs1318294542 8 dbSNP
rs757405013 10 dbSNP
rs1381426359 12 dbSNP
rs779289885 20 dbSNP
rs199960252 21 dbSNP
rs1358561462 22 dbSNP
rs1228912440 23 dbSNP
rs1274795925 28 dbSNP
rs571241516 29 dbSNP
rs1435767004 33 dbSNP
rs776086610 34 dbSNP
rs1237612536 38 dbSNP
rs978312434 39 dbSNP
rs1182464802 40 dbSNP
rs924085653 54 dbSNP
rs944864928 59 dbSNP
rs1292092368 61 dbSNP
rs1052339999 62 dbSNP
rs537077891 63 dbSNP
rs550687372 69 dbSNP
rs1266582074 71 dbSNP
rs955499482 72 dbSNP
rs1211806157 83 dbSNP
rs1263334678 83 dbSNP
rs1309877949 84 dbSNP
rs922338141 91 dbSNP
rs1419659647 93 dbSNP
rs932359946 98 dbSNP
rs1214720060 103 dbSNP
rs1409450120 105 dbSNP
rs1367235792 114 dbSNP
rs80225356 115 dbSNP
rs888394270 117 dbSNP
rs568979201 125 dbSNP
rs1036928856 126 dbSNP
rs1304736251 130 dbSNP
rs536402539 133 dbSNP
rs1003341651 139 dbSNP
rs1035516271 140 dbSNP
rs1367703585 149 dbSNP
rs1388806267 156 dbSNP
rs1456655255 159 dbSNP
rs1168546640 160 dbSNP
rs1025932718 166 dbSNP
rs552903092 168 dbSNP
rs1180539372 171 dbSNP
rs1482070454 176 dbSNP
rs1012287558 181 dbSNP
rs1397823202 187 dbSNP
rs573060907 188 dbSNP
rs917619564 194 dbSNP
rs1373961762 195 dbSNP
rs538580785 197 dbSNP
rs1238820542 198 dbSNP
rs1315231063 199 dbSNP
rs1323210210 201 dbSNP
rs1219091101 202 dbSNP
rs1264688834 205 dbSNP
rs980523114 206 dbSNP
rs1200410404 207 dbSNP
rs925115029 215 dbSNP
rs1226461423 216 dbSNP
rs192622785 226 dbSNP
rs1022292535 227 dbSNP
rs1299009888 233 dbSNP
rs1411694966 237 dbSNP
rs1439096785 241 dbSNP
rs936530858 246 dbSNP
rs1184293908 252 dbSNP
rs1416230577 270 dbSNP
rs968312234 275 dbSNP
rs1425833964 277 dbSNP
rs1370772290 278 dbSNP
rs1163089795 280 dbSNP
rs1164495920 283 dbSNP
rs375040349 285 dbSNP
rs924183290 297 dbSNP
rs1483710214 302 dbSNP
rs966615347 306 dbSNP
rs946014003 316 dbSNP
rs1051103037 317 dbSNP
rs1267189215 323 dbSNP
rs1242310518 335 dbSNP
rs1320925176 336 dbSNP
rs891168159 339 dbSNP
rs1463883001 347 dbSNP
rs558455055 352 dbSNP
rs1348928148 354 dbSNP
rs976275027 360 dbSNP
rs922392644 366 dbSNP
rs777701862 368 dbSNP
rs1405672499 375 dbSNP
rs577603595 380 dbSNP
rs1018397980 399 dbSNP
rs543456567 406 dbSNP
rs747913664 407 dbSNP
rs146638670 412 dbSNP
rs574058027 417 dbSNP
rs1380856318 422 dbSNP
rs909572031 426 dbSNP
rs941006306 427 dbSNP
rs1180784834 430 dbSNP
rs1025878926 432 dbSNP
rs1037361776 434 dbSNP
rs1269316611 442 dbSNP
rs951664260 443 dbSNP
rs543170648 445 dbSNP
rs992200994 452 dbSNP
rs1307807882 453 dbSNP
rs1210434362 458 dbSNP
rs1024634980 464 dbSNP
rs1267802020 473 dbSNP
rs969499998 484 dbSNP
rs1332934432 503 dbSNP
rs897029469 518 dbSNP
rs1386716785 519 dbSNP
rs1363340899 520 dbSNP
rs139873967 537 dbSNP
rs1456011982 538 dbSNP
rs1056292262 539 dbSNP
rs1157993224 541 dbSNP
rs1466045372 543 dbSNP
rs548174812 549 dbSNP
rs1196205423 553 dbSNP
rs1432522736 554 dbSNP
rs1239339372 557 dbSNP
rs987951119 560 dbSNP
rs895260175 561 dbSNP
rs1482382200 569 dbSNP
rs149837627 571 dbSNP
rs1254316022 572 dbSNP
rs116962354 576 dbSNP
rs1232710241 577 dbSNP
rs145501333 578 dbSNP
rs933258253 582 dbSNP
rs1433286062 585 dbSNP
rs746596099 590 dbSNP
rs770333418 591 dbSNP
rs57694849 597 dbSNP
rs891112159 602 dbSNP
rs999493174 604 dbSNP
rs1170266367 607 dbSNP
rs942708236 610 dbSNP
rs1039783243 619 dbSNP
rs148841241 623 dbSNP
rs6882516 626 dbSNP
rs770020269 629 dbSNP
rs1188064016 634 dbSNP
rs1444337546 635 dbSNP
rs1360348091 653 dbSNP
rs1199920717 657 dbSNP
rs1483436784 662 dbSNP
rs558593627 664 dbSNP
rs74782977 670 dbSNP
rs887309033 671 dbSNP
rs953525876 676 dbSNP
rs1342145418 678 dbSNP
rs985191725 692 dbSNP
rs769394250 694 dbSNP
rs774716971 696 dbSNP
rs867061366 700 dbSNP
rs1013834810 701 dbSNP
rs184283558 705 dbSNP
rs768105162 710 dbSNP
rs558423290 716 dbSNP
rs1309717112 717 dbSNP
rs1280692878 721 dbSNP
rs939268968 730 dbSNP
rs1056334856 736 dbSNP
rs894998458 737 dbSNP
rs1163593870 750 dbSNP
rs1209522510 762 dbSNP
rs1366888585 767 dbSNP
rs947835890 771 dbSNP
rs1187145786 773 dbSNP
rs776128495 774 dbSNP
rs1242850868 777 dbSNP
rs1043836370 793 dbSNP
rs903937178 797 dbSNP
rs1001837463 800 dbSNP
rs763351798 801 dbSNP
rs764600179 803 dbSNP
rs1211951953 819 dbSNP
rs1030990759 822 dbSNP
rs1281994039 833 dbSNP
rs1032026519 838 dbSNP
rs1350793794 844 dbSNP
rs1289678316 850 dbSNP
rs879591534 850 dbSNP
rs1262967406 866 dbSNP
rs1369852808 873 dbSNP
rs902117998 875 dbSNP
rs143509106 876 dbSNP
rs1406839106 878 dbSNP
rs1029174041 881 dbSNP
rs1162494036 886 dbSNP
rs537006650 891 dbSNP
rs1414515777 892 dbSNP
rs547490009 893 dbSNP
rs1423697368 897 dbSNP
rs984882607 898 dbSNP
rs954727954 904 dbSNP
rs1450171374 908 dbSNP
rs1016677505 919 dbSNP
rs556950236 920 dbSNP
rs1209827424 930 dbSNP
rs972838038 934 dbSNP
rs147549610 939 dbSNP
rs1329389599 941 dbSNP
rs1269687016 961 dbSNP
rs918239473 967 dbSNP
rs767750932 970 dbSNP
rs1421195155 977 dbSNP
rs1438540588 979 dbSNP
rs1296086088 982 dbSNP
rs113365860 988 dbSNP
rs1039729298 994 dbSNP
rs919974989 998 dbSNP
rs1391042775 1002 dbSNP
rs1157254352 1010 dbSNP
rs1405355092 1017 dbSNP
rs559832050 1017 dbSNP
rs1425971022 1019 dbSNP
rs1276483207 1021 dbSNP
rs760869968 1025 dbSNP
rs931378894 1028 dbSNP
rs1189590002 1032 dbSNP
rs1365411274 1042 dbSNP
rs537563343 1043 dbSNP
rs879449663 1044 dbSNP
rs1218705407 1047 dbSNP
rs992089574 1051 dbSNP
rs1315750815 1053 dbSNP
rs766582463 1066 dbSNP
rs1356084232 1075 dbSNP
rs1014199768 1082 dbSNP
rs569088648 1084 dbSNP
rs1220491747 1088 dbSNP
rs947908888 1097 dbSNP
rs905469489 1101 dbSNP
rs1435490323 1104 dbSNP
rs1490598344 1106 dbSNP
rs1318715052 1108 dbSNP
rs1043572834 1114 dbSNP
rs1360039235 1117 dbSNP
rs925388795 1118 dbSNP
rs1224238683 1132 dbSNP
rs545664685 1136 dbSNP
rs1425026136 1140 dbSNP
rs1169820803 1142 dbSNP
rs1052926374 1156 dbSNP
rs901858986 1161 dbSNP
rs755284182 1163 dbSNP
rs565533667 1165 dbSNP
rs566293509 1167 dbSNP
rs957733504 1169 dbSNP
rs1009254605 1170 dbSNP
rs1021152955 1172 dbSNP
rs954543029 1173 dbSNP
rs761366660 1180 dbSNP
rs1441039735 1183 dbSNP
rs987731035 1191 dbSNP
rs910430909 1205 dbSNP
rs964632134 1216 dbSNP
rs1295129123 1224 dbSNP
rs1213820469 1226 dbSNP
rs1156407960 1236 dbSNP
rs1359515342 1242 dbSNP
rs1050637545 1254 dbSNP
rs1445864287 1256 dbSNP
rs1405672023 1271 dbSNP
rs973352707 1273 dbSNP
rs1325358724 1283 dbSNP
rs919922996 1285 dbSNP
rs1432156945 1288 dbSNP
rs889360763 1289 dbSNP
rs1348025570 1290 dbSNP
rs1170162401 1292 dbSNP
rs1006377787 1294 dbSNP
rs1280097337 1295 dbSNP
rs1379144530 1303 dbSNP
rs1238070319 1306 dbSNP
rs1471488909 1307 dbSNP
rs1256173001 1314 dbSNP
rs1047128458 1318 dbSNP
rs1483979367 1321 dbSNP
rs1272456575 1322 dbSNP
rs1203500342 1331 dbSNP
rs1308712344 1334 dbSNP
rs1322140845 1341 dbSNP
rs1016371371 1346 dbSNP
rs949555386 1347 dbSNP
rs962799311 1356 dbSNP
rs1355127116 1358 dbSNP
rs187514438 1360 dbSNP
rs767298744 1366 dbSNP
rs550562270 1367 dbSNP
rs1369194344 1369 dbSNP
rs560746202 1373 dbSNP
rs141967895 1385 dbSNP
rs1025786446 1391 dbSNP
rs1458671802 1393 dbSNP
rs1351995703 1395 dbSNP
rs1163186870 1397 dbSNP
rs1459541571 1406 dbSNP
rs529725342 1407 dbSNP
rs546366598 1424 dbSNP
rs1182246688 1425 dbSNP
rs960406778 1427 dbSNP
rs369652926 1428 dbSNP
rs372174788 1435 dbSNP
rs1176245611 1436 dbSNP
rs1266976343 1438 dbSNP
rs1219191491 1439 dbSNP
rs1334413403 1441 dbSNP
rs1269033344 1442 dbSNP
rs905417139 1454 dbSNP
rs916536285 1455 dbSNP
rs1306837853 1459 dbSNP
rs1164746626 1463 dbSNP
rs2279770 1468 dbSNP
rs1370440607 1469 dbSNP
rs140653823 1472 dbSNP
rs1331883311 1473 dbSNP
rs1440697543 1474 dbSNP
rs1009662298 1475 dbSNP
rs552092725 1475 dbSNP
rs1020681857 1482 dbSNP
rs1361575224 1485 dbSNP
rs1157809178 1488 dbSNP
rs1433698694 1498 dbSNP
rs2279769 1499 dbSNP
rs1191461488 1520 dbSNP
rs774496097 1521 dbSNP
rs1467893628 1523 dbSNP
rs1444647206 1527 dbSNP
rs979285356 1537 dbSNP
rs184005916 1539 dbSNP
rs1008698257 1541 dbSNP
rs925159874 1543 dbSNP
rs935132878 1544 dbSNP
rs1327410396 1546 dbSNP
rs1260212727 1552 dbSNP
rs1234100232 1559 dbSNP
rs1314431431 1567 dbSNP
rs1299852186 1575 dbSNP
rs1052541469 1581 dbSNP
rs1440581675 1585 dbSNP
rs1366387749 1592 dbSNP
rs34563023 1594 dbSNP
rs568776163 1600 dbSNP
rs537769712 1603 dbSNP
rs1382416151 1608 dbSNP
rs933360140 1611 dbSNP
rs1050375992 1614 dbSNP
rs889393363 1619 dbSNP
rs1282679813 1620 dbSNP
rs554470326 1626 dbSNP
rs1356034848 1632 dbSNP
rs1006410215 1633 dbSNP
rs189306052 1634 dbSNP
rs1260476699 1642 dbSNP
rs1190346967 1643 dbSNP
rs1445460061 1647 dbSNP
rs933145485 1652 dbSNP
rs1201063695 1657 dbSNP
rs1316668011 1658 dbSNP
rs1196196820 1663 dbSNP
rs1254706726 1670 dbSNP
rs898006577 1674 dbSNP
rs994037779 1675 dbSNP
rs1237074146 1676 dbSNP
rs1052016200 1679 dbSNP
rs536691395 1681 dbSNP
rs910667572 1682 dbSNP
rs13357040 1684 dbSNP
rs1235396645 1687 dbSNP
rs1294443245 1690 dbSNP
rs943447800 1691 dbSNP
rs1013287966 1710 dbSNP
rs1396040235 1714 dbSNP
rs1023288690 1720 dbSNP
rs1434018916 1722 dbSNP
rs969020223 1729 dbSNP
rs979358950 1731 dbSNP
rs1032641988 1734 dbSNP
rs1170222359 1735 dbSNP
rs956571070 1736 dbSNP
rs1372684068 1740 dbSNP
rs573291299 1745 dbSNP
rs1188516917 1747 dbSNP
rs1425576523 1752 dbSNP
rs545579010 1759 dbSNP
rs754886017 1760 dbSNP
rs1464047067 1763 dbSNP
rs1170023210 1764 dbSNP
rs113230877 1767 dbSNP
rs1194394724 1771 dbSNP
rs559212793 1772 dbSNP
rs923412013 1775 dbSNP
rs933392713 1776 dbSNP
rs1290865470 1779 dbSNP
rs1277850677 1783 dbSNP
rs986117322 1788 dbSNP
rs910569941 1793 dbSNP
rs1413685378 1794 dbSNP
rs1350977982 1795 dbSNP
rs1309813904 1798 dbSNP
rs1407939472 1799 dbSNP
rs575982767 1801 dbSNP
rs926789429 1817 dbSNP
rs1459637898 1818 dbSNP
rs10075786 1819 dbSNP
rs867569474 1820 dbSNP
rs898032325 1826 dbSNP
rs561663532 1827 dbSNP
rs529652296 1828 dbSNP
rs1057480622 1830 dbSNP
rs890162395 1832 dbSNP
rs1009060887 1835 dbSNP
rs1257121451 1842 dbSNP
rs896261499 1848 dbSNP
rs1232106320 1852 dbSNP
rs1201675804 1853 dbSNP
rs1329244415 1860 dbSNP
rs1281157164 1861 dbSNP
rs1439923921 1865 dbSNP
rs1276056629 1871 dbSNP
rs1441544502 1872 dbSNP
rs185580173 1873 dbSNP
rs1323934101 1877 dbSNP
rs1388351652 1879 dbSNP
rs559950073 1882 dbSNP
rs1164484154 1883 dbSNP
rs1457782845 1889 dbSNP
rs1476737679 1893 dbSNP
rs1156967779 1898 dbSNP
rs1192794816 1902 dbSNP
rs12658825 1910 dbSNP
rs1201396775 1911 dbSNP
rs1285744332 1911 dbSNP
rs1329505475 1911 dbSNP
rs201519420 1911 dbSNP
rs541318241 1911 dbSNP
rs869165502 1911 dbSNP
rs12656929 1912 dbSNP
rs1245713876 1916 dbSNP
rs1221618885 1917 dbSNP
rs1000903011 1923 dbSNP
rs1401755270 1928 dbSNP
rs1236174058 1929 dbSNP
rs1420596574 1934 dbSNP
rs1300314381 1943 dbSNP
rs1325039927 1947 dbSNP
rs994685158 1952 dbSNP
rs1027548908 1968 dbSNP
rs950694732 1969 dbSNP
rs1032297660 1976 dbSNP
rs956825142 1980 dbSNP
rs1174829341 1982 dbSNP
rs200773824 1993 dbSNP
rs1272618829 1994 dbSNP
rs758283569 1995 dbSNP
rs982584603 1996 dbSNP
rs1189692701 2003 dbSNP
rs1216838431 2005 dbSNP
rs1465046939 2009 dbSNP
rs1243537491 2022 dbSNP
rs532090607 2026 dbSNP
rs747127506 2027 dbSNP
rs1487154857 2029 dbSNP
rs988018605 2031 dbSNP
rs938159731 2032 dbSNP
rs1445949952 2044 dbSNP
rs1279166740 2049 dbSNP
rs1212916107 2050 dbSNP
rs1345723259 2055 dbSNP
rs1302374245 2058 dbSNP
rs989612475 2059 dbSNP
rs1030559143 2063 dbSNP
rs1268666260 2068 dbSNP
rs34109212 2068 dbSNP
rs915462517 2068 dbSNP
rs1430021860 2069 dbSNP
rs1267968844 2077 dbSNP
rs1434898206 2078 dbSNP
rs551924702 2082 dbSNP
rs986191171 2086 dbSNP
rs190291318 2087 dbSNP
rs1433401099 2088 dbSNP
rs942039066 2090 dbSNP
rs1169599652 2091 dbSNP
rs375454566 2099 dbSNP
rs375773126 2103 dbSNP
rs919548054 2107 dbSNP
rs944416085 2115 dbSNP
rs1237545022 2117 dbSNP
rs1212449489 2127 dbSNP
rs1038772910 2128 dbSNP
rs1419472962 2133 dbSNP
rs929530000 2136 dbSNP
rs1057361270 2139 dbSNP
rs1271073053 2140 dbSNP
rs896001334 2141 dbSNP
rs34425848 2145 dbSNP
rs994632836 2145 dbSNP
rs948833771 2149 dbSNP
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rs1413070269 2157 dbSNP
rs1048930615 2184 dbSNP
rs1309206351 2190 dbSNP
rs1044841577 2193 dbSNP
rs548178696 2194 dbSNP
rs904943159 2195 dbSNP
rs1000567971 2202 dbSNP
rs1385629512 2203 dbSNP
rs568389910 2204 dbSNP
rs1414133000 2208 dbSNP
rs1189384070 2212 dbSNP
rs775088817 2213 dbSNP
rs1256632678 2217 dbSNP
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rs1009914482 2230 dbSNP
rs1194102543 2231 dbSNP
rs1481610952 2238 dbSNP
rs1230961442 2244 dbSNP
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rs1322535366 2261 dbSNP
rs1275308457 2262 dbSNP
rs1030175346 2263 dbSNP
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rs954552050 2268 dbSNP
rs796873034 2276 dbSNP
rs112809424 2282 dbSNP
rs1310914814 2283 dbSNP
rs1007308083 2284 dbSNP
rs1238045892 2286 dbSNP
rs1017682486 2300 dbSNP
rs1437657302 2302 dbSNP
rs1394710600 2311 dbSNP
rs1166647144 2321 dbSNP
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rs1159283857 2336 dbSNP
rs1024247399 2349 dbSNP
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rs1003519920 2364 dbSNP
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rs1207935865 2384 dbSNP
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rs959459051 2395 dbSNP
rs1220106313 2406 dbSNP
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rs1477211125 3201 dbSNP
rs1258065469 3203 dbSNP
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rs930504476 3220 dbSNP
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rs1357423311 3798 dbSNP
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rs907755554 3841 dbSNP
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rs1458737536 3876 dbSNP
rs1373877118 3880 dbSNP
rs914403156 3881 dbSNP
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rs977350161 3896 dbSNP
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rs527514341 3904 dbSNP
rs924535090 3907 dbSNP
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rs1251566236 3920 dbSNP
rs1460890286 3924 dbSNP
rs1315549701 3929 dbSNP
rs893144241 3936 dbSNP
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rs891368563 3990 dbSNP
rs541158062 4001 dbSNP
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rs1420057652 4020 dbSNP
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rs887939282 4094 dbSNP
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rs777246923 4234 dbSNP
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rs1167469200 4414 dbSNP
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rs577165144 4433 dbSNP
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rs1399987822 4463 dbSNP
rs186227881 4464 dbSNP
rs1175962341 4467 dbSNP
rs1415799931 4468 dbSNP
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rs894132155 4492 dbSNP
rs996041816 4497 dbSNP
rs1425619532 4503 dbSNP
rs1012548829 4513 dbSNP
rs1224581345 4518 dbSNP
rs1257932774 4525 dbSNP
rs1027447585 4529 dbSNP
rs539036226 4536 dbSNP
rs887517590 4539 dbSNP
rs555772986 4544 dbSNP
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rs1269116511 4573 dbSNP
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rs529830376 4662 dbSNP
rs912577814 4663 dbSNP
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rs1236740927 4678 dbSNP
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rs1402086732 4739 dbSNP
rs1225928599 4744 dbSNP
rs1328633233 4747 dbSNP
rs1464649720 4751 dbSNP
rs1300797975 4762 dbSNP
rs1057286792 4780 dbSNP
rs887559343 4783 dbSNP
rs1004654095 4792 dbSNP
rs1403599746 4800 dbSNP
rs527585446 4804 dbSNP
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rs1014647885 4828 dbSNP
rs1236615170 4839 dbSNP
rs564366293 4840 dbSNP
rs906870470 4842 dbSNP
rs1002536589 4846 dbSNP
rs1034300633 4851 dbSNP
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rs1220002617 4853 dbSNP
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rs1242802085 4882 dbSNP
rs1378568559 4892 dbSNP
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rs1367687387 4898 dbSNP
rs1434183252 4904 dbSNP
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rs1160710043 4952 dbSNP
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rs1243200764 4973 dbSNP
rs1373790417 4978 dbSNP
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rs1164275551 4993 dbSNP
rs1351940163 4997 dbSNP
rs1285837814 5006 dbSNP
rs1238931409 5013 dbSNP
rs1312457308 5016 dbSNP
rs1302699346 5019 dbSNP
rs1393596311 5030 dbSNP
rs975378515 5046 dbSNP
rs866250599 5051 dbSNP
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rs1298747541 5061 dbSNP
rs1401833345 5063 dbSNP
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rs1369749439 5075 dbSNP
rs1048617078 5077 dbSNP
rs139359690 5083 dbSNP
rs756292165 5084 dbSNP
rs1447012946 5095 dbSNP
rs1379615581 5106 dbSNP
rs1308726188 5111 dbSNP
rs1314856183 5119 dbSNP
rs1173955770 5122 dbSNP
rs531625807 5123 dbSNP
rs1432681967 5124 dbSNP
rs1238073104 5132 dbSNP
rs1196460247 5133 dbSNP
rs1265960211 5134 dbSNP
rs940130780 5139 dbSNP
rs376155397 5146 dbSNP
rs953953342 5153 dbSNP
rs1211859089 5157 dbSNP
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rs1036152913 5160 dbSNP
rs1311090832 5162 dbSNP
rs780282059 5168 dbSNP
rs984073417 5169 dbSNP
rs1220361245 5173 dbSNP
rs1016673957 5178 dbSNP
rs145088716 5188 dbSNP
rs1396426001 5197 dbSNP
rs1404539175 5202 dbSNP
rs1458286612 5203 dbSNP
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rs755992138 5206 dbSNP
rs960173529 5211 dbSNP
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rs1423581977 5217 dbSNP
rs916128592 5220 dbSNP
rs1254585067 5224 dbSNP
rs1248690960 5231 dbSNP
rs1418857199 5240 dbSNP
rs147598795 5241 dbSNP
rs1370680221 5247 dbSNP
rs894116294 5252 dbSNP
rs1200012183 5259 dbSNP
rs1315948426 5265 dbSNP
rs183446736 5270 dbSNP
rs1245498781 5271 dbSNP
rs1011919547 5275 dbSNP
rs547624998 5276 dbSNP
rs967189088 5287 dbSNP
rs1395659154 5290 dbSNP
rs570793243 5293 dbSNP
rs1377946920 5306 dbSNP
rs998644080 5324 dbSNP
rs1393036736 5328 dbSNP
rs925596671 5330 dbSNP
rs1299461358 5335 dbSNP
rs1019693146 5336 dbSNP
rs965421565 5347 dbSNP
rs1400145862 5350 dbSNP
rs748793591 5357 dbSNP
rs1164319368 5358 dbSNP
rs921282499 5363 dbSNP
rs549242692 5364 dbSNP
rs934357149 5374 dbSNP
rs539771354 5383 dbSNP
rs187215492 5385 dbSNP
rs1179920811 5394 dbSNP
rs1456055168 5396 dbSNP
rs1053259359 5402 dbSNP
rs984781734 5403 dbSNP
rs908791707 5406 dbSNP
rs997986425 5412 dbSNP
rs940204398 5421 dbSNP
rs1244983011 5423 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions HEK293
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... PAR-CLIP data was present in GSM545214. RNA binding protein: AGO3. Condition:Control ...

- Hafner M; Landthaler M; Burger L; Khorshid et al., 2010, Cell.

miRNA-target interactions (Provided by authors)
IDDuplex structurePosition
1
miRNA  3' guguuugguAAUACACGACGAu 5'
                   || | ||||||| 
Target 5' ------uuuUUUUUUGCUGCUc 3'
1 - 16
Article - Hafner M; Landthaler M; Burger L; Khorshid et al.
- Cell, 2010
RNA transcripts are subject to posttranscriptional gene regulation involving hundreds of RNA-binding proteins (RBPs) and microRNA-containing ribonucleoprotein complexes (miRNPs) expressed in a cell-type dependent fashion. We developed a cell-based crosslinking approach to determine at high resolution and transcriptome-wide the binding sites of cellular RBPs and miRNPs. The crosslinked sites are revealed by thymidine to cytidine transitions in the cDNAs prepared from immunopurified RNPs of 4-thiouridine-treated cells. We determined the binding sites and regulatory consequences for several intensely studied RBPs and miRNPs, including PUM2, QKI, IGF2BP1-3, AGO/EIF2C1-4 and TNRC6A-C. Our study revealed that these factors bind thousands of sites containing defined sequence motifs and have distinct preferences for exonic versus intronic or coding versus untranslated transcript regions. The precise mapping of binding sites across the transcriptome will be critical to the interpretation of the rapidly emerging data on genetic variation between individuals and how these variations contribute to complex genetic diseases.
LinkOut: [PMID: 20371350]
Experimental Support 2 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
     
Conditions Jiyoye
Tools used in this research TargetScan
Original Description (Extracted from the article) ... HITS-CLIP data was present in Supplenentary. RNA binding protein: AGO2. ...

- Riley KJ; Rabinowitz GS; Yario TA; Luna JM; et al., 2012, The EMBO journal.

Article - Riley KJ; Rabinowitz GS; Yario TA; Luna JM; et al.
- The EMBO journal, 2012
Epstein-Barr virus (EBV) controls gene expression to transform human B cells and maintain viral latency. High-throughput sequencing and crosslinking immunoprecipitation (HITS-CLIP) identified mRNA targets of 44 EBV and 310 human microRNAs (miRNAs) in Jijoye (Latency III) EBV-transformed B cells. While 25% of total cellular miRNAs are viral, only three viral mRNAs, all latent transcripts, are targeted. Thus, miRNAs do not control the latent/lytic switch by targeting EBV lytic genes. Unexpectedly, 90% of the 1664 human 3'-untranslated regions targeted by the 12 most abundant EBV miRNAs are also targeted by human miRNAs via distinct binding sites. Half of these are targets of the oncogenic miR-17 approximately 92 miRNA cluster and associated families, including mRNAs that regulate transcription, apoptosis, Wnt signalling, and the cell cycle. Reporter assays confirmed the functionality of several EBV and miR-17 family miRNA-binding sites in EBV latent membrane protein 1 (LMP1), EBV BHRF1, and host CAPRIN2 mRNAs. Our extensive list of EBV and human miRNA targets implicates miRNAs in the control of EBV latency and illuminates viral miRNA function in general.
LinkOut: [PMID: 22473208]
CLIP-seq Support 1 for dataset GSM545214
Method / RBP PAR-CLIP / AGO3
Cell line / Condition HEK293 / Control
Location of target site ENST00000286307.5 | 3UTR | UUUUUUUUUGCUGCUCC
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 20371350 / GSE21578
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
GSE21687 Ependynoma primary tumors -0.308 6.6e-3 -0.232 3.3e-2 64 Click to see details
GSE21032 Prostate cancer -0.244 1.3e-2 -0.272 6.4e-3 83 Click to see details
GSE34608 Pulmonary tuberculosis and sarcoidosis 0.492 1.4e-2 0.549 6.1e-3 20 Click to see details
GSE19350 CNS germ cell tumors 0.587 2.2e-2 0.699 5.7e-3 12 Click to see details
GSE38226 Liver fibrosis 0.441 2.3e-2 0.408 3.3e-2 21 Click to see details
GSE14794 Lymphoblastoid cells 0.174 5.0e-2 0.107 1.6e-1 90 Click to see details
GSE26953 Aortic valvular endothelial cells -0.331 5.7e-2 -0.338 5.3e-2 24 Click to see details
GSE35602 Colorectal cancer stromal tissue 0.283 8.5e-2 0.333 5.2e-2 25 Click to see details
GSE42095 Differentiated embryonic stem cells -0.289 9.1e-2 -0.250 1.2e-1 23 Click to see details
GSE38974 Chronic obstructive pulmonary disease -0.275 9.2e-2 -0.356 4.0e-2 25 Click to see details
GSE32688 Pancreatic cancer 0.219 1.1e-1 0.147 2.1e-1 32 Click to see details
GSE17306 Multiple myeloma -0.149 1.5e-1 -0.087 2.8e-1 49 Click to see details
GSE21849 B cell lymphoma -0.173 1.8e-1 -0.134 2.4e-1 29 Click to see details
GSE27834 Pluripotent stem cells 0.095 3.6e-1 0.071 4.0e-1 16 Click to see details
GSE19783 ER- ER- breast cancer -0.027 4.1e-1 -0.056 3.1e-1 79 Click to see details
GSE28260 Renal cortex and medulla 0.058 4.3e-1 0.181 2.8e-1 13 Click to see details
GSE19536 Breast cancer -0.019 4.3e-1 -0.021 4.2e-1 100 Click to see details
GSE28544 Breast cancer -0.026 4.5e-1 -0.243 1.3e-1 24 Click to see details
GSE19783 ER+ ER+ breast cancer -0.011 4.8e-1 -0.084 3.6e-1 20 Click to see details
GSE19783 ER+ ER+ breast cancer -0.011 4.8e-1 -0.084 3.6e-1 20 Click to see details
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
BLCA -0.776 0 -0.759 0 18 Click to see details
STAD -0.577 0 -0.599 0 32 Click to see details
BRCA -0.287 0 -0.353 0 84 Click to see details
LUSC -0.364 0.01 -0.352 0.02 38 Click to see details
THCA -0.289 0.01 -0.331 0.01 59 Click to see details
CHOL -0.654 0.03 -0.733 0.01 9 Click to see details
PRAD -0.27 0.03 -0.171 0.12 50 Click to see details
CESC 0.924 0.12 1.000 0.5 3 Click to see details
PAAD 0.706 0.15 0.400 0.3 4 Click to see details
KIRP -0.179 0.16 -0.074 0.34 32 Click to see details
UCEC 0.201 0.2 0.135 0.29 19 Click to see details
HNSC 0.11 0.24 0.092 0.28 42 Click to see details
LUAD 0.193 0.27 0.133 0.34 12 Click to see details
KICH 0.1 0.32 0.156 0.23 25 Click to see details
LIHC -0.064 0.33 -0.046 0.38 49 Click to see details
COAD -0.096 0.41 -0.143 0.37 8 Click to see details
ESCA 0.016 0.48 0.045 0.45 11 Click to see details
KIRC -0.003 0.49 0.027 0.41 68 Click to see details
PCPG 0.023 0.49 0.500 0.33 3 Click to see details
PCPG 0.023 0.49 0.500 0.33 3 Click to see details
PCPG 0.023 0.49 0.500 0.33 3 Click to see details
MiRNA Regulatory Network:
Functional analysis:
Strong evidence (reporter assay, western blot, qRT-PCR or qPCR) Other evidence
Transcription factor regulation Circular RNA sponge
691 hsa-miR-15a-5p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT000280 BMI1 BMI1 proto-oncogene, polycomb ring finger 5 3
MIRT000282 WNT3A Wnt family member 3A 3 2
MIRT000283 MYB MYB proto-oncogene, transcription factor 5 3
MIRT000284 CDC25A cell division cycle 25A 3 3
MIRT000285 CCND2 cyclin D2 3 5
MIRT000804 RAB9B RAB9B, member RAS oncogene family 1 1
MIRT000806 ACTR1A ARP1 actin related protein 1 homolog A 1 1
MIRT000808 TPI1 triosephosphate isomerase 1 1 1
MIRT000810 PDCD4 programmed cell death 4 3 2
MIRT000812 RAB21 RAB21, member RAS oncogene family 2 1
MIRT000815 BCL2 BCL2, apoptosis regulator 6 13
MIRT000817 WT1 Wilms tumor 1 2 1
MIRT000819 ASXL2 additional sex combs like 2, transcriptional regulator 2 1
MIRT000823 TMEM251 transmembrane protein 251 2 1
MIRT000825 CARD8 caspase recruitment domain family member 8 2 1
MIRT000827 CDC14B cell division cycle 14B 2 1
MIRT000829 CENPJ centromere protein J 2 1
MIRT000831 CEP63 centrosomal protein 63 2 1
MIRT000833 CREBL2 cAMP responsive element binding protein like 2 3 3
MIRT000835 ECHDC1 ethylmalonyl-CoA decarboxylase 1 2 1
MIRT000847 GOLGA5 golgin A5 2 1
MIRT000849 GOLPH3L golgi phosphoprotein 3 like 2 1
MIRT000851 GTF2H1 general transcription factor IIH subunit 1 2 1
MIRT000853 H3F3B H3 histone family member 3B 2 1
MIRT000855 HACE1 HECT domain and ankyrin repeat containing E3 ubiquitin protein ligase 1 2 1
MIRT000857 HDHD2 haloacid dehalogenase like hydrolase domain containing 2 2 1
MIRT000859 HERC6 HECT and RLD domain containing E3 ubiquitin protein ligase family member 6 2 1
MIRT000863 HRSP12 reactive intermediate imine deaminase A homolog 2 1
MIRT000865 HSDL2 hydroxysteroid dehydrogenase like 2 2 1
MIRT000866 HSPA1A heat shock protein family A (Hsp70) member 1A 2 1
MIRT000868 JUN Jun proto-oncogene, AP-1 transcription factor subunit 2 1
MIRT000878 MCL1 MCL1, BCL2 family apoptosis regulator 2 1
MIRT000880 MSH2 mutS homolog 2 2 1
MIRT000884 OMA1 OMA1 zinc metallopeptidase 2 1
MIRT000886 OSGEPL1 O-sialoglycoprotein endopeptidase like 1 2 1
MIRT000888 PDCD6IP programmed cell death 6 interacting protein 2 1
MIRT000890 PHKB phosphorylase kinase regulatory subunit beta 2 1
MIRT000892 PMS1 PMS1 homolog 1, mismatch repair system component 2 1
MIRT000894 PNN pinin, desmosome associated protein 2 1
MIRT000896 PRIM1 DNA primase subunit 1 2 1
MIRT000898 RAD51C RAD51 paralog C 2 1
MIRT000900 RHOT1 ras homolog family member T1 2 1
MIRT000902 RNASEL ribonuclease L 2 1
MIRT000906 SLC35A1 solute carrier family 35 member A1 2 1
MIRT000908 SLC35B3 solute carrier family 35 member B3 2 1
MIRT000910 TIA1 TIA1 cytotoxic granule associated RNA binding protein 2 1
MIRT000914 UGDH UDP-glucose 6-dehydrogenase 2 1
MIRT000916 UGP2 UDP-glucose pyrophosphorylase 2 2 1
MIRT000922 ZNF559 zinc finger protein 559 2 1
MIRT001227 CCND1 cyclin D1 5 7
MIRT001228 CCNE1 cyclin E1 6 8
MIRT001802 BACE1 beta-secretase 1 2 1
MIRT002946 DMTF1 cyclin D binding myb like transcription factor 1 3 3
MIRT003333 BRCA1 BRCA1, DNA repair associated 2 2
MIRT003334 AKT3 AKT serine/threonine kinase 3 2 4
MIRT003872 WIPF1 WAS/WASL interacting protein family member 1 2 1
MIRT003873 VPS45 vacuolar protein sorting 45 homolog 2 1
MIRT003874 HSP90B1 heat shock protein 90 beta family member 1 2 1
MIRT003875 SKAP2 src kinase associated phosphoprotein 2 3 1
MIRT003876 NT5DC1 5'-nucleotidase domain containing 1 2 1
MIRT003877 FAM69A family with sequence similarity 69 member A 2 1
MIRT003878 C2orf74 chromosome 2 open reading frame 74 1 1
MIRT003879 FAM122C family with sequence similarity 122C 2 1
MIRT003880 PWWP2A PWWP domain containing 2A 2 1
MIRT003881 C17orf80 chromosome 17 open reading frame 80 2 1
MIRT003882 CCDC111 primase and DNA directed polymerase 2 1
MIRT003883 C2orf43 lipid droplet associated hydrolase 2 1
MIRT003884 C4orf27 histone PARylation factor 1 2 1
MIRT003885 NIPAL2 NIPA like domain containing 2 2 1
MIRT003886 TRMT13 tRNA methyltransferase 13 homolog 2 1
MIRT003887 ANAPC16 anaphase promoting complex subunit 16 2 1
MIRT003888 CADM1 cell adhesion molecule 1 3 1
MIRT003891 TMEM184B transmembrane protein 184B 2 1
MIRT003899 APP amyloid beta precursor protein 3 2
MIRT004046 UCP2 uncoupling protein 2 3 1
MIRT004275 VEGFA vascular endothelial growth factor A 6 11
MIRT004680 TSPYL2 TSPY like 2 2 1
MIRT004829 NFKB1 nuclear factor kappa B subunit 1 3 1
MIRT005552 CHUK conserved helix-loop-helix ubiquitous kinase 4 1
MIRT005763 TP53 tumor protein p53 1 1
MIRT006027 FGF7 fibroblast growth factor 7 2 1
MIRT006176 CLCN3 chloride voltage-gated channel 3 4 1
MIRT006177 CRKL CRK like proto-oncogene, adaptor protein 5 2
MIRT006181 MN1 MN1 proto-oncogene, transcriptional regulator 4 1
MIRT006658 Ccnd1 cyclin D1 1 1
MIRT006801 HMGA1 high mobility group AT-hook 1 4 2
MIRT006805 HMGA2 high mobility group AT-hook 2 3 1
MIRT006913 IFNG interferon gamma 2 1
MIRT006998 PURA purine rich element binding protein A 2 2
MIRT007090 RECK reversion inducing cysteine rich protein with kazal motifs 3 2
MIRT032077 DLK1 delta like non-canonical Notch ligand 1 2 1
MIRT051311 PLA2G2D phospholipase A2 group IID 1 1
MIRT051312 ACVR1B activin A receptor type 1B 1 1
MIRT051313 IKBKG inhibitor of nuclear factor kappa B kinase subunit gamma 1 1
MIRT051314 GCLM glutamate-cysteine ligase modifier subunit 1 1
MIRT051315 PCF11 PCF11 cleavage and polyadenylation factor subunit 1 1
MIRT051316 HIST1H2BK histone cluster 1 H2B family member k 1 1
MIRT051317 ODC1 ornithine decarboxylase 1 1 1
MIRT051318 CALD1 caldesmon 1 1 1
MIRT051319 RPP30 ribonuclease P/MRP subunit p30 1 1
MIRT051320 ASNSD1 asparagine synthetase domain containing 1 1 1
MIRT051321 CCNYL1 cyclin Y like 1 1 1
MIRT051322 RGPD5 RANBP2-like and GRIP domain containing 5 1 1
MIRT051323 PREB prolactin regulatory element binding 1 1
MIRT051324 PDHX pyruvate dehydrogenase complex component X 1 1
MIRT051325 SNX6 sorting nexin 6 1 1
MIRT051326 CNN3 calponin 3 1 1
MIRT051327 KIF1A kinesin family member 1A 1 1
MIRT051328 NAB1 NGFI-A binding protein 1 1 1
MIRT051329 CCT6B chaperonin containing TCP1 subunit 6B 1 1
MIRT051330 CHD4 chromodomain helicase DNA binding protein 4 1 1
MIRT051331 CLCC1 chloride channel CLIC like 1 1 1
MIRT051332 GDI2 GDP dissociation inhibitor 2 1 1
MIRT051333 BRWD1 bromodomain and WD repeat domain containing 1 1 1
MIRT051334 MAPK6 mitogen-activated protein kinase 6 1 1
MIRT051335 PSMC4 proteasome 26S subunit, ATPase 4 1 1
MIRT051336 ATF2 activating transcription factor 2 1 1
MIRT051337 ATP6AP1 ATPase H+ transporting accessory protein 1 1 1
MIRT051338 FBXO3 F-box protein 3 1 1
MIRT051339 PRDX3 peroxiredoxin 3 1 1
MIRT051340 CABIN1 calcineurin binding protein 1 1 1
MIRT051341 FASN fatty acid synthase 1 3
MIRT051342 SEC63 SEC63 homolog, protein translocation regulator 1 1
MIRT051343 PTAR1 protein prenyltransferase alpha subunit repeat containing 1 1 1
MIRT051344 DSTYK dual serine/threonine and tyrosine protein kinase 1 1
MIRT051345 FOXO1 forkhead box O1 4 2
MIRT051346 TMEM214 transmembrane protein 214 1 1
MIRT051347 TRIM28 tripartite motif containing 28 1 1
MIRT051348 NOP2 NOP2 nucleolar protein 1 1
MIRT051349 MYBL1 MYB proto-oncogene like 1 1 1
MIRT051350 TTC1 tetratricopeptide repeat domain 1 1 1
MIRT051351 BTRC beta-transducin repeat containing E3 ubiquitin protein ligase 1 2
MIRT052930 REPIN1 replication initiator 1 2 1
MIRT053079 KLF4 Kruppel like factor 4 1 1
MIRT054283 YAP1 Yes associated protein 1 3 1
MIRT054424 CARM1 coactivator associated arginine methyltransferase 1 3 1
MIRT054895 SOX5 SRY-box 5 2 1
MIRT055421 SHOC2 SHOC2, leucine rich repeat scaffold protein 1 6
MIRT055811 PLEKHA1 pleckstrin homology domain containing A1 1 1
MIRT057514 CEP55 centrosomal protein 55 1 4
MIRT057729 ZDHHC16 zinc finger DHHC-type containing 16 1 1
MIRT057906 STXBP3 syntaxin binding protein 3 1 1
MIRT061005 C1ORF21 chromosome 1 open reading frame 21 1 3
MIRT061244 AMOTL1 angiomotin like 1 1 6
MIRT061529 BTG2 BTG anti-proliferation factor 2 1 1
MIRT063394 ETNK1 ethanolamine kinase 1 1 1
MIRT065711 TARBP2 TARBP2, RISC loading complex RNA binding subunit 1 2
MIRT066291 MTFR1L mitochondrial fission regulator 1 like 1 1
MIRT066312 USP15 ubiquitin specific peptidase 15 1 1
MIRT068655 AKAP11 A-kinase anchoring protein 11 1 1
MIRT071206 FCF1 FCF1, rRNA-processing protein 1 1
MIRT072822 ARIH1 ariadne RBR E3 ubiquitin protein ligase 1 1 3
MIRT074530 PAGR1 PAXIP1 associated glutamate rich protein 1 1 2
MIRT075249 SNTB2 syntrophin beta 2 1 2
MIRT075273 VPS4A vacuolar protein sorting 4 homolog A 1 4
MIRT075891 C16ORF72 chromosome 16 open reading frame 72 1 4
MIRT076791 GOSR1 golgi SNAP receptor complex member 1 1 1
MIRT077781 MINK1 misshapen like kinase 1 1 1
MIRT078282 RPS6KB1 ribosomal protein S6 kinase B1 1 1
MIRT079655 NAPG NSF attachment protein gamma 1 6
MIRT080011 GALNT1 polypeptide N-acetylgalactosaminyltransferase 1 1 2
MIRT082985 PNPLA6 patatin like phospholipase domain containing 6 1 1
MIRT083265 ZCCHC3 zinc finger CCHC-type containing 3 1 3
MIRT084462 SOWAHC sosondowah ankyrin repeat domain family member C 1 2
MIRT085215 CCNT2 cyclin T2 1 1
MIRT086005 UBR3 ubiquitin protein ligase E3 component n-recognin 3 (putative) 1 1
MIRT087424 ZNRF3 zinc and ring finger 3 1 1
MIRT087554 YWHAH tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein eta 1 1
MIRT088102 SEPT2 septin 2 1 1
MIRT089105 B3GNT2 UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 2 1 2
MIRT089206 ACTR2 ARP2 actin related protein 2 homolog 1 2
MIRT090446 CDV3 CDV3 homolog 1 1
MIRT090688 U2SURP U2 snRNP associated SURP domain containing 1 1
MIRT091667 RARB retinoic acid receptor beta 1 3
MIRT092190 ITPR1 inositol 1,4,5-trisphosphate receptor type 1 1 1
MIRT092209 BHLHE40 basic helix-loop-helix family member e40 1 1
MIRT093682 PI4K2B phosphatidylinositol 4-kinase type 2 beta 1 3
MIRT096234 CANX calnexin 1 1
MIRT098827 PCMT1 protein-L-isoaspartate (D-aspartate) O-methyltransferase 1 1
MIRT099631 E2F3 E2F transcription factor 3 1 1
MIRT100207 PPP1R11 protein phosphatase 1 regulatory inhibitor subunit 11 1 1
MIRT100364 HSPA1B heat shock protein family A (Hsp70) member 1B 2 5
MIRT100566 PIM1 Pim-1 proto-oncogene, serine/threonine kinase 1 1
MIRT100896 CD2AP CD2 associated protein 1 1
MIRT102434 CALU calumenin 1 2
MIRT102632 UBN2 ubinuclein 2 1 6
MIRT102971 EN2 engrailed homeobox 2 1 3
MIRT103092 MAFK MAF bZIP transcription factor K 1 3
MIRT103856 FOXK1 forkhead box K1 1 2
MIRT104015 USP42 ubiquitin specific peptidase 42 1 3
MIRT106292 ZFHX4 zinc finger homeobox 4 1 3
MIRT106733 RAD23B RAD23 homolog B, nucleotide excision repair protein 1 2
MIRT107218 ZBTB34 zinc finger and BTB domain containing 34 1 1
MIRT108983 SLC9A6 solute carrier family 9 member A6 1 1
MIRT109240 ZNF275 zinc finger protein 275 1 1
MIRT110051 OGT O-linked N-acetylglucosamine (GlcNAc) transferase 1 4
MIRT112969 LUZP1 leucine zipper protein 1 1 3
MIRT114923 CHAC1 ChaC glutathione specific gamma-glutamylcyclotransferase 1 1 1
MIRT117655 SCAMP4 secretory carrier membrane protein 4 1 1
MIRT120680 PAK2 p21 (RAC1) activated kinase 2 1 1
MIRT127725 ENTPD1 ectonucleoside triphosphate diphosphohydrolase 1 1 2
MIRT128798 UBE4A ubiquitination factor E4A 1 1
MIRT129055 ARCN1 archain 1 1 1
MIRT130380 PTPRJ protein tyrosine phosphatase, receptor type J 1 1
MIRT131097 TMEM138 transmembrane protein 138 1 1
MIRT132734 RASSF5 Ras association domain family member 5 1 1
MIRT132831 MAPKAPK2 mitogen-activated protein kinase-activated protein kinase 2 1 1
MIRT133334 BCL7A BCL tumor suppressor 7A 1 1
MIRT133769 SKI SKI proto-oncogene 1 2
MIRT137517 RCOR1 REST corepressor 1 1 1
MIRT140146 SPRED1 sprouty related EVH1 domain containing 1 1 2
MIRT140820 SMAD3 SMAD family member 3 1 1
MIRT141243 SCAMP5 secretory carrier membrane protein 5 1 1
MIRT141279 UBE2Q2 ubiquitin conjugating enzyme E2 Q2 1 1
MIRT142237 DCTN5 dynactin subunit 5 1 5
MIRT144019 PSKH1 protein serine kinase H1 1 1
MIRT145377 ANKRD13B ankyrin repeat domain 13B 1 1
MIRT146014 EZH1 enhancer of zeste 1 polycomb repressive complex 2 subunit 1 1
MIRT146351 PNPO pyridoxamine 5'-phosphate oxidase 1 1
MIRT146496 SNX11 sorting nexin 11 1 1
MIRT148302 RNF138 ring finger protein 138 1 1
MIRT150354 IER2 immediate early response 2 1 1
MIRT152274 TNFSF9 TNF superfamily member 9 1 2
MIRT152503 ENTPD6 ectonucleoside triphosphate diphosphohydrolase 6 (putative) 1 1
MIRT152736 KIF3B kinesin family member 3B 1 1
MIRT152922 NOL4L nucleolar protein 4 like 1 1
MIRT154043 RASSF2 Ras association domain family member 2 1 1
MIRT154392 CDS2 CDP-diacylglycerol synthase 2 1 1
MIRT156452 ATP5G3 ATP synthase, H+ transporting, mitochondrial Fo complex subunit C3 (subunit 9) 1 1
MIRT158519 TNRC6B trinucleotide repeat containing 6B 1 3
MIRT158990 EPT1 selenoprotein I 1 1
MIRT159580 PEX13 peroxisomal biogenesis factor 13 1 1
MIRT160169 TET3 tet methylcytosine dioxygenase 3 1 1
MIRT163253 PRKCD protein kinase C delta 1 1
MIRT164260 CPEB2 cytoplasmic polyadenylation element binding protein 2 1 1
MIRT164952 TADA2B transcriptional adaptor 2B 1 1
MIRT165172 GRAMD3 GRAM domain containing 2B 1 2
MIRT165883 CREBRF CREB3 regulatory factor 1 2
MIRT168680 CDKN1A cyclin dependent kinase inhibitor 1A 1 1
MIRT169058 IRF4 interferon regulatory factor 4 1 1
MIRT170136 KLHDC10 kelch domain containing 10 1 1
MIRT170733 UBE3C ubiquitin protein ligase E3C 1 1
MIRT171597 SUN1 Sad1 and UNC84 domain containing 1 1 1
MIRT172813 HMBOX1 homeobox containing 1 1 1
MIRT174781 RNF38 ring finger protein 38 1 1
MIRT175232 PSAT1 phosphoserine aminotransferase 1 1 4
MIRT175524 ZBTB33 zinc finger and BTB domain containing 33 1 1
MIRT179008 PAFAH1B2 platelet activating factor acetylhydrolase 1b catalytic subunit 2 1 1
MIRT180909 RPRD2 regulation of nuclear pre-mRNA domain containing 2 1 4
MIRT186371 PNRC2 proline rich nuclear receptor coactivator 2 1 1
MIRT189760 CDADC1 cytidine and dCMP deaminase domain containing 1 1 1
MIRT189961 AGO4 argonaute 4, RISC catalytic component 1 1
MIRT190184 GPR180 G protein-coupled receptor 180 1 3
MIRT191454 PPM1A protein phosphatase, Mg2+/Mn2+ dependent 1A 1 1
MIRT191625 SLC39A9 solute carrier family 39 member 9 1 3
MIRT194237 FAM103A1 family with sequence similarity 103 member A1 1 3
MIRT194903 RBBP6 RB binding protein 6, ubiquitin ligase 1 4
MIRT196275 PAFAH1B1 platelet activating factor acetylhydrolase 1b regulatory subunit 1 1 1
MIRT196450 TAOK1 TAO kinase 1 1 1
MIRT201456 SNRPB2 small nuclear ribonucleoprotein polypeptide B2 1 4
MIRT204592 HSPE1-MOB4 HSPE1-MOB4 readthrough 1 4
MIRT204623 MOB4 MOB family member 4, phocein 1 4
MIRT204741 BZW1 basic leucine zipper and W2 domains 1 1 6
MIRT206020 NUP50 nucleoporin 50 1 4
MIRT211199 FGF2 fibroblast growth factor 2 1 2
MIRT211314 HSPA4L heat shock protein family A (Hsp70) member 4 like 1 2
MIRT212604 RBPJ recombination signal binding protein for immunoglobulin kappa J region 1 4
MIRT217743 TBPL1 TATA-box binding protein like 1 1 2
MIRT223681 FZD6 frizzled class receptor 6 1 3
MIRT224965 BAG4 BCL2 associated athanogene 4 1 1
MIRT229343 ZNF449 zinc finger protein 449 1 1
MIRT229860 YIPF6 Yip1 domain family member 6 1 1
MIRT230120 DDX3Y DEAD-box helicase 3, Y-linked 1 1
MIRT234342 MSL1 male specific lethal 1 homolog 1 4
MIRT245003 ENTPD7 ectonucleoside triphosphate diphosphohydrolase 7 1 1
MIRT246938 PRRC2C proline rich coiled-coil 2C 1 1
MIRT247095 WEE1 WEE1 G2 checkpoint kinase 1 2
MIRT247236 ELK4 ELK4, ETS transcription factor 1 2
MIRT247368 GABARAPL1 GABA type A receptor associated protein like 1 1 3
MIRT248550 PDIK1L PDLIM1 interacting kinase 1 like 1 1
MIRT248765 ATXN7L3B ataxin 7 like 3B