miRTarBase - #MIRT624165 -
pre-miRNA Information
pre-miRNA hsa-mir-122   
Genomic Coordinates chr18: 58451074 - 58451158
Synonyms MIR122A, MIRN122, MIRN122A, hsa-mir-122, miRNA122, miRNA122A, MIR122
Description Homo sapiens miR-122 stem-loop
Comment The mature sequence shown here represents the most commonly cloned form from large-scale cloning studies .
RNA Secondary Structure
Associated Diseases

Mature miRNA Information
Mature miRNA hsa-miR-122-5p
Sequence 15| UGGAGUGUGACAAUGGUGUUUG |36
Evidence Experimental
Experiments Cloned
Editing Events in miRNAs
Modification Type Position on miR Chromosome DNA Strand Genomic Position (hg38) List of PMIDs Variant details
A-to-I 4 18 + 58451091 29233923 MiREDiBase
C-to-U 11 18 + 58451098 28550310 MiREDiBase
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs1258166649 1 dbSNP
rs1426570658 6 dbSNP
Putative Targets

miRNA Expression profile
Human miRNA Tissue Atlas
miRNAs in Extracellular Vesicles

Circulating MicroRNA Expression Profiling
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol DGKE   
Synonyms AHUS7, DAGK5, DAGK6, DGK, NPHS7
Description diacylglycerol kinase epsilon
Transcript NM_003647   
Expression
Putative miRNA Targets on DGKE
3'UTR of DGKE
(miRNA target sites are highlighted)
>DGKE|NM_003647|3'UTR
   1 ATGGATGAGGGAGTGAAAACTTTGCATAGAATCCTCACGCAAGTAGATACATGTTCATCCAAAAGTATTAATAGAAATTC
  81 TCTATCAGCTATTCAGTCTTAATTTCACTAGTAGTATAATGGGTATACATTTTTGTAAATAGCATCCCCAAACCAGCCAG
 161 CCTTCAGTTATTTACAAATGTTTGTTCTTTTTTCAGCAAAATACTTCAAATGAATAGTATTAACTTACAAAAAGTCACAA
 241 AAACTTACATGAGAGTGAAAATTTGTTATGACTGTTTTGAGAGTGGGACTCACTCTGAAGTATGTGCTGTCTCATGTCTT
 321 ATTTTTGAACCATGCATATGATGGACACACAATGGATGGACACATTATATCTCCAACAAGGTGTGGGTGGAAAGATCAAA
 401 TTAACCTGCTTTTTTGAAAGGAAATGATTACTGTCAAACCAGCATGGTTAATTGTGAGCATCCTCCTGCAGCATGCCCCT
 481 TAAGATTTTCTACAACCCAAACCAAGTGTATGTATTGATTTCTAGGAACCCCCAAAAGGAGAATAGTAAAAAAAGATCAT
 561 ACTTAAAATTTGTATTACAATTTTTATTTTAGGAACTTATTCAGACACGTAAATGTTGTTTAATTCTGTAGGTAACCATT
 641 TGAGCTGCAATTCAGGATCTTTTTTATAACACCAGTGTAGCCAAAAGAGAAACAGATAAGTGAATTGGTAAGAAATAAGA
 721 TTCAGAGCACTTGGGATTGTAAGTTATAGGTTCTGAGCTGAACTGTTTATCAGCCGCTCTTTTTATTAAAAGACAGTGTC
 801 AACACTTCAAAAAACGTGCTTAAAGGAGACAACGGTGAGATTAATTGCTTAGAAAAAGCTCAAGGCTGACTGATAAGTTT
 881 TAAAAATTTGGTGGTCTTGTAGTATTTTGAAATACAGTAGTCTTTTAACAGAATTTCCCCTTAGGGAGGTAAGTGGACAG
 961 AAATCTTTGCTAAAATGTTTATATCATATTTATTTTAAAATGAGAGAGATATATTTTTAAATTATTTATTATTTACCTTG
1041 TGGTATGGTACCTGTGTTTAGTGTTTACGTTCTGTAGCTTTATTTAATAAGTTAAATTGATCACATAAATTCTGCTAGTC
1121 ACAATCAGATAGAAATTTAGTCTATTAATTAAAATTCTAATTTAATTCTCCTGACAGAAATCTAGATATTCTTATTCTTC
1201 ACAAATATTCCTCATTGTATTGAAAAATGAAGGAGGGCATGAAAAGCACTAGGGAACTACTTTTGGATAACTGAAAGCTT
1281 TGTTTCATTGTTTTATTTGCCCCTCAATTGCCACAAACTTACTGAAGGGCTAGTTTCATGGTTCCCATTAGAGGGTGCTT
1361 GTTCGCTGCTGTTGACCAGCCCAAGGGTCGTGACCCACAGGTCGGCTGACCCAGAGGGCATCCAGCCTGGTGTTTTTCTG
1441 ACACATGGCCCAGGCTTTGTGGTCTTTCATGACATTAATCTCTGAAAGATCAGAATGTATCCCCCAAAATACCATTAGCT
1521 ATCTTTGAGGGTCTATTATGAATCTGTCATCCATGAATTGCCATAAACCTAAGTTTGCCTCACCTCAGGCCCAGACCATG
1601 TTTTCAAAGAGCAACTTAGTAATGTATACAGTAGTCAGTACATTTTATGAAATACTCTATTTTGCTAAATTAACCTCTTG
1681 CAGATCTCCTCAGGTGATCTTAAATTCTAGTCTTGAGAAACTTTGTGAGCAGATCTGTTTTCAGCTTCTTTATATACCTT
1761 TCATGGTAAGTAACCATGGCAGTGAGGATGGCAGAGTTTTGTTTTTTTTTTTTTTAATGGGCCAATCATGTTCTGAGTAT
1841 TATGAAGTTTATCCTTTCATTCATGATCAAAATTGTTAAAGACATCACATTTTATAAATACACTGTTAAATCCACTTTGC
1921 TGTAGGTTATAGTTTACCTGTTATATAATTCGTAGTGCTAATTGTAGTAGAAGCAAATCAATTTAGGATGTTGGAACGAA
2001 AATAATCACAATAACTAATACAGCTTTTTAATTGTGAAAACTACAATTAAAAATTATAATTTTAATACCAACCATAATAT
2081 TACACTGTATTTAGAACAGGCTTATGTAAAATGCCCTCATTTATCTAAATAAGTTGATTTTTTGGTTATTGTAATCTAGT
2161 AAGGTTTTTGCATCACTACTGGTCTGTCATGAAGTTTTTCTGCTGGCTTATTCACTTATTTAGACTTCATTTAGGGAAGC
2241 TATTTCAGAATACCATCTCATAAAATGTATCATTATCTTGTTTTTGCAAAATTCACTTACTTTTTGGGCACATTTACCCA
2321 GCATTTCAAATAAGTGTATAGGCATGTGCCTTGTTTAAGTACAATTTATAAGACTTCATGTTTGCAAGTTACATATTAGG
2401 GTAGTGATTGTTTATATTACCAGGGATTCTACACTTTACCAAAAAAAATTGCCATAAGATTTTCCTGTTCCATTTTAAAT
2481 TGTCTTGATATTTAAAAAAATAACTTCTACATTCTCAGGAAGAAATACATGAAGTAAATCATATCTCCATGTCTGTTTCC
2561 AGATTTCTCTAATCTTTTTACTATCCCAATACATTCCTAATTCCTATAAACGTAGTGGCTTAAATACTGAATACCTGGCA
2641 GCTCTTAAAGATCCCTTAGGCAGATGATGATAATTTTCAGTGTTTCGTCATGTTTAATAGAAATCAAACTGACTTGTGTT
2721 TTAAAATACAAGTTGTCTGCTAGTAAAGTTACATGATTTAGGTGTGTTTTAGGTTTTCTGCAACAATTAGCTGTGAACCC
2801 CTAATGTAGCTAAGTTTATACAAATTTTATAATCAAAATTATTTATTTTTATTTTTTTAGAGTATGTCAAAAACATATAG
2881 TGTTTGCTTTGTGAAATACATTTGCTTAGAGTTATAAAATATACTGTGACTCAGAAATTGTAAAGTCAGTTTGCGTTGTA
2961 AAAATGAATACTACCAGCATGTCAAAAGAAAAATAATTTACATTTGTAATATAAAGTAAAATTGTATTTAATATATTTAT
3041 TGAATTTTAAATTTGCACTAACTTGAAAACTTTAAAGGTTATACTAATTTAATGATTAATGTGGACCCAAATACATAATT
3121 TGGCCAAAAAAGTCATTAGAATGGGTAATGGTTTTGTGTGGTTTTCCTTCAAAATGATAATATTGAAGCAAGAACCAGCA
3201 TTTTATATTGATAATTTTTTTAATATTTCTACCCAGTTGAGGACAGTGGAATATAAGTAGATATATTTAAAATATCTAGA
3281 TATTTAAAAAGAAAGAAAAGGTTGTTTATCCCAATCTGAATTCATTCTCAGCAACAAGACAGAAAAGGTGGTTTGGGTTT
3361 TGCTTTTAAACAGTGTCCCCCTGTCTTTTTCAATTTTTCCCTTGAAGCCTTTCTCTTGTTCTTCAGAGTACGCGCTGCAG
3441 GCTATCTGCAGCATCAGAATGCCTGGGCAGGCTGTTGAAAGTATGGATTCCTGAGCCCAACCCTTAACTTAATGATTCCC
3521 TGTCTCTGGAGATGCAACATAGAAATCTCTGTTTTTATTAACAAGCGCCTCAGGCGATTCTTAAGCATACTGAAATTTGA
3601 AAGCTTCTGGTCTGAACCTCATGTATTCACCTAGGGCTTTTGCTAGGTGGGATACCATGCCGAAAAATTGAATTAATTGT
3681 ATGTTCTTAAAATTGTTTTTCTTCTACTCCGCTGTCCTCTTCCCTCAAAATCACTTTTCTAAAAGAACTCTATGAAAAAC
3761 TTATTTGTATCATACCCAAATTGATATATTTGTCTGAACTCTGTTACATAAAAATTGGTATGATTCATATGTGGAATCAG
3841 TTTTTGGACTGTGACCCATGCAGTGTTGGGGGACAAGGAGTTGCTTCAGGAGTTAGTGCAGTGCGCCTCCAAGGGGCAGT
3921 GAGCCATGGAGGCGCCTGCCTTCTCACTGCAGTCAATGCAGCCACACTTGTGTATACTGAGTGCTGCTTCAGATCTCAGT
4001 AGATAAAATAATTCCACATTTAAAATGATTCTGCTATTTTTTATAAAGGGTTTGAAAGCCACTACTATAATGACTTTGTC
4081 ACCTAATTGATTTTCTACTAATTTTTACATATTCAGAAACTTCGTGTTTTTTTGGTGGACAGAATATTTTGGAGGTCTCC
4161 GTCGCTGTTTAGAATGTGGCCACTTGGCTGTTTCACAGTTTTTAAAGCTATTTTATTGAATAGTAAAGCAGTGAACTTAG
4241 CCTTTGTTCTTTGTGTTTCTAATTTAAGCATATAGTCTATTTAATTTTTGATATGTAAATACACATCAATACATATATAT
4321 TTACCCATGTGGCCCTGTGTAGTCAGTGCATGAGGCTTGCATAGCCCAGAAAGGTACATTCCAGGGTTCTGGGGAAAGAA
4401 TTTTAAAATGCCATCCTCTAATACAGACGTTTATAAAACTTAAATGAAATGATTGGGCTTAACCATATGCAAGAAAGTCT
4481 GCAGAAAATAAATCACCTAGAAACTATAAATAGAAATGTGCTGCTGAGGCTGGGCACGGTGGCTCACACCTGTAATCCCA
4561 GCACTTGGGGGGCTAAGGGAGGCGTATCACCTGAGGTCAGGAGTTTGAGACAAGCCTGGTCAACATGGTGAAACGCCGTC
4641 TCTACTAAAAATACAAAAAAAATTAGCCAGGTACATTGGCACATGCCTTTAATCCCAGCTAATCAGGAGGCTGAGGCACG
4721 AGAATTGCTCGAACCCAGGCGGCAGAGCTTGCAGTGAGCGGAGATCACATGACTGCACTCCAGCCTGGGCAACAGAGCAA
4801 GACTCCATCTCAAAAAAAAAAAGGCCGGGCGTGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCTGAGGCAGGTG
4881 GATCACGAGGTCAGGAGATCGAGACTATCCTGGCTAACACGGTGACACCCCGCCTCTACTAAAAATCCAAAAATTTAGCC
4961 GGGCATGGTGGCGGGCACCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCAGAGC
5041 TTGCAGGGAGGCGGAGCTTGCAGCGAGCCGAGATAGTGCCACTGCAGTGGGGCCTGGGCCAAAGAGTGAGACTCCATCTC
5121 AAAAAAAAAAAAAAAGAAAGAAATGTGTTGCTGGTATCAGATATCAGACCAAGAACACTTCAGTCTCTCTAAGGATGCCC
5201 TGAGCTACCTCACTGTTAAAGGACGACATCAACACAGAATGCACTAAACAGGAAATAAGCTGTAATCTAGAGAATTTCCA
5281 TTATGTGTTACTTTTTGGTGACTAACATGGAATGTTGAAAAGGAAGAGCTGGAAAGCTCAGTTGTTTTCCTTGTTCCTCT
5361 GACATTGTCCAGGCAAGAGGGCATCCTGATCAGATGAGTAGATTTGGCTGAGAAAAACCCTAGAGTAAGGCAGGCACTTT
5441 GTGGAGGTGGATGATGATGGCTCATAAAAACGTTTGTTCTCAGTCCAGTTCAGGGCTCTGCCAGCAGTCTTTCAGATCTG
5521 AACTGCTTAAACAAACCCTACAGATAAATTGGCACTCTGATTTGTAATTCTGTTTGTACAAGTTTAGAGCAGCCTAGCTC
5601 GAGTCCTCAACCCCAGTCCTCTTAGAAGTGAACTGATTGCACTGGATCCCTAAACCCACAATGTTGAGGACACATGTGAT
5681 GACTCCACTTGCTCAGCCAGCTGGCCTCTTGCACTTTCCCCTGCCCACCACTTGTAACTACCACTTAATTATCTTGTGTT
5761 AATTGCTTTTGTTGTGTTGGGTCTGTATTTTTGTGGTCAGTGCCTGCAGGCAGAAATGTGAAAGCATTTGGTATGTTGAA
5841 GATACTTGCTTCTTTTTTAATAAAATTAAAAGTGCAGCACGTAAAAAAAAAAAAAAAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions (Predicted by miRanda)
IDDuplex structurePositionScoreMFE
1
miRNA  3' guUUGUGGUAACAG-UGUGAGGu 5'
            || : || |||| |||||:| 
Target 5' taAAAGACAGTGTCAACACTTCa 3'
787 - 809 148.00 -17.30
2
miRNA  3' guUUGUGGU-AACAG-UGUGAGGu 5'
            :| |:||  || | :|||||| 
Target 5' cgGAGATCACATGACTGCACTCCa 3'
4759 - 4782 136.00 -15.90
3
miRNA  3' guuUGUGGUAACAGUGUGAGGu 5'
             |: ||| |   |||:||| 
Target 5' actATCCCAAT---ACATTCCt 3'
2580 - 2598 132.00 -10.10
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN24574326 7 COSMIC
COSN28877469 19 COSMIC
COSN30460538 37 COSMIC
COSN31586525 39 COSMIC
COSN30480734 40 COSMIC
COSN30530099 60 COSMIC
COSN31601961 81 COSMIC
COSN30166118 87 COSMIC
COSN2456080 509 COSMIC
COSN26399448 815 COSMIC
COSN24490653 911 COSMIC
COSN15778085 935 COSMIC
COSN15663380 1802 COSMIC
COSN20114218 1815 COSMIC
COSN20114214 1816 COSMIC
COSN22614543 1999 COSMIC
COSN21731675 2000 COSMIC
COSN2512527 2030 COSMIC
COSN26220387 2815 COSMIC
COSN17075829 2955 COSMIC
COSN16941329 3215 COSMIC
COSN15880253 3442 COSMIC
COSN16356293 3567 COSMIC
COSN7440561 4636 COSMIC
COSN17457424 4928 COSMIC
COSN32153998 5109 COSMIC
COSN29853813 5136 COSMIC
COSN8244342 5344 COSMIC
COSN15976071 5355 COSMIC
COSN25316025 5941 COSMIC
COSN29170190 5967 COSMIC
COSN26707416 6542 COSMIC
COSN19583027 6694 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs1467262274 4 dbSNP
rs760862333 8 dbSNP
rs764321176 12 dbSNP
rs376574993 15 dbSNP
rs369090272 16 dbSNP
rs1053908519 20 dbSNP
rs754148566 21 dbSNP
rs753475866 24 dbSNP
rs757291138 26 dbSNP
rs1284008975 27 dbSNP
rs1296496348 28 dbSNP
rs1325859035 29 dbSNP
rs777006912 34 dbSNP
rs757365660 37 dbSNP
rs765717776 39 dbSNP
rs750881561 40 dbSNP
rs759014759 44 dbSNP
rs780538846 47 dbSNP
rs372684580 49 dbSNP
rs755782664 50 dbSNP
rs902987843 52 dbSNP
rs151189920 58 dbSNP
rs1001589433 61 dbSNP
rs1366294622 62 dbSNP
rs757004447 68 dbSNP
rs369803479 79 dbSNP
rs1291248776 81 dbSNP
rs1442677912 85 dbSNP
rs533305488 88 dbSNP
rs878931954 99 dbSNP
rs551660521 103 dbSNP
rs1166148226 119 dbSNP
rs764793945 124 dbSNP
rs1034450974 125 dbSNP
rs894170166 129 dbSNP
rs112031816 134 dbSNP
rs1358846708 146 dbSNP
rs962520326 147 dbSNP
rs1173182979 162 dbSNP
rs1012528909 163 dbSNP
rs1189505468 168 dbSNP
rs1284142003 172 dbSNP
rs1470032484 180 dbSNP
rs749935248 181 dbSNP
rs776715180 188 dbSNP
rs570861218 200 dbSNP
rs1315825494 206 dbSNP
rs1248659034 210 dbSNP
rs982461227 211 dbSNP
rs1015775176 215 dbSNP
rs1298621102 218 dbSNP
rs1235806047 227 dbSNP
rs746212416 228 dbSNP
rs1300225537 229 dbSNP
rs965911703 229 dbSNP
rs56849465 230 dbSNP
rs921509933 239 dbSNP
rs8071009 240 dbSNP
rs1472991602 245 dbSNP
rs1178274480 252 dbSNP
rs1456578545 264 dbSNP
rs1252433043 265 dbSNP
rs1157830870 273 dbSNP
rs936163444 275 dbSNP
rs1254167179 278 dbSNP
rs73327139 280 dbSNP
rs915212284 286 dbSNP
rs946254780 289 dbSNP
rs945457535 290 dbSNP
rs535919612 307 dbSNP
rs1309672010 312 dbSNP
rs1337116085 312 dbSNP
rs1392300063 314 dbSNP
rs1221181291 322 dbSNP
rs1402203072 323 dbSNP
rs1311580353 333 dbSNP
rs1042843000 335 dbSNP
rs554115960 336 dbSNP
rs924491065 341 dbSNP
rs1449878949 342 dbSNP
rs1338261900 346 dbSNP
rs1340752950 350 dbSNP
rs938500679 353 dbSNP
rs1376173313 355 dbSNP
rs116841267 361 dbSNP
rs894380144 362 dbSNP
rs1012745003 365 dbSNP
rs1365724491 368 dbSNP
rs139700082 372 dbSNP
rs80037124 373 dbSNP
rs1230715504 376 dbSNP
rs1212937409 382 dbSNP
rs1485936784 387 dbSNP
rs1003935567 390 dbSNP
rs1213803097 391 dbSNP
rs1015747994 397 dbSNP
rs1268521599 398 dbSNP
rs567068904 401 dbSNP
rs1352453581 407 dbSNP
rs1342047253 410 dbSNP
rs965610555 411 dbSNP
rs1240283514 415 dbSNP
rs1340264679 423 dbSNP
rs1460895684 431 dbSNP
rs1417183689 433 dbSNP
rs1356634444 436 dbSNP
rs1201894721 439 dbSNP
rs1297702266 440 dbSNP
rs1258503337 445 dbSNP
rs1399015089 446 dbSNP
rs995351446 448 dbSNP
rs1159377169 461 dbSNP
rs1443269362 461 dbSNP
rs1415438066 464 dbSNP
rs1025860023 466 dbSNP
rs1475524828 467 dbSNP
rs1262354476 478 dbSNP
rs1230895523 479 dbSNP
rs998759839 482 dbSNP
rs1190483421 485 dbSNP
rs763171942 486 dbSNP
rs1448210011 488 dbSNP
rs1206576127 493 dbSNP
rs1028454692 498 dbSNP
rs1208877166 504 dbSNP
rs1471045130 509 dbSNP
rs954286089 511 dbSNP
rs1271713931 516 dbSNP
rs1235487731 518 dbSNP
rs145444280 523 dbSNP
rs915264766 532 dbSNP
rs1429164087 534 dbSNP
rs1328278994 539 dbSNP
rs966681029 545 dbSNP
rs1386446796 546 dbSNP
rs1008534024 548 dbSNP
rs1166880128 549 dbSNP
rs1461765916 549 dbSNP
rs1422907143 550 dbSNP
rs978229031 552 dbSNP
rs543048566 554 dbSNP
rs1166102722 557 dbSNP
rs1178043216 575 dbSNP
rs1242227446 581 dbSNP
rs1402467196 601 dbSNP
rs1390393890 603 dbSNP
rs561703736 609 dbSNP
rs764097144 610 dbSNP
rs1412100676 616 dbSNP
rs963667174 632 dbSNP
rs975082432 633 dbSNP
rs573703516 635 dbSNP
rs1057367592 651 dbSNP
rs957745185 657 dbSNP
rs1323507087 666 dbSNP
rs562375485 667 dbSNP
rs1270897958 668 dbSNP
rs915709913 670 dbSNP
rs1369139526 673 dbSNP
rs1328161283 678 dbSNP
rs1221747243 687 dbSNP
rs948651686 706 dbSNP
rs1048274125 709 dbSNP
rs1411636142 717 dbSNP
rs774442224 721 dbSNP
rs946253255 725 dbSNP
rs1345811026 727 dbSNP
rs1046385451 733 dbSNP
rs928901732 734 dbSNP
rs937319142 737 dbSNP
rs147694297 740 dbSNP
rs1202841644 746 dbSNP
rs1440097224 748 dbSNP
rs1004279135 751 dbSNP
rs1036822184 755 dbSNP
rs898503626 759 dbSNP
rs1182699645 761 dbSNP
rs1345840116 764 dbSNP
rs9897759 765 dbSNP
rs1372815229 768 dbSNP
rs1479455479 773 dbSNP
rs1047156288 775 dbSNP
rs886919416 776 dbSNP
rs1333444568 777 dbSNP
rs1432711300 784 dbSNP
rs1461064951 785 dbSNP
rs1376778265 794 dbSNP
rs997914476 795 dbSNP
rs1019480933 797 dbSNP
rs1431991722 798 dbSNP
rs544993363 803 dbSNP
rs954171850 805 dbSNP
rs1187874851 808 dbSNP
rs1403565230 809 dbSNP
rs1011187633 816 dbSNP
rs187993549 817 dbSNP
rs957737735 820 dbSNP
rs1022540348 834 dbSNP
rs748317890 835 dbSNP
rs978492934 844 dbSNP
rs769980792 859 dbSNP
rs928870712 862 dbSNP
rs937539980 892 dbSNP
rs1418558584 898 dbSNP
rs759687377 899 dbSNP
rs1290680229 906 dbSNP
rs1489802995 916 dbSNP
rs1400864639 918 dbSNP
rs565052696 919 dbSNP
rs527500094 923 dbSNP
rs991750674 923 dbSNP
rs1268009429 930 dbSNP
rs990890796 933 dbSNP
rs1047573307 943 dbSNP
rs1190460104 946 dbSNP
rs1485590436 949 dbSNP
rs887232592 950 dbSNP
rs1218250502 953 dbSNP
rs1317691813 956 dbSNP
rs142320562 958 dbSNP
rs1231193872 965 dbSNP
rs1293818536 966 dbSNP
rs1336941981 966 dbSNP
rs530806980 974 dbSNP
rs1381521230 976 dbSNP
rs915762219 978 dbSNP
rs1162540250 987 dbSNP
rs943865033 1002 dbSNP
rs948536641 1007 dbSNP
rs193057611 1011 dbSNP
rs899684210 1012 dbSNP
rs1420398636 1022 dbSNP
rs996687939 1022 dbSNP
rs1428399267 1026 dbSNP
rs909801067 1026 dbSNP
rs1381711123 1028 dbSNP
rs939914739 1037 dbSNP
rs1293610193 1060 dbSNP
rs1417487423 1062 dbSNP
rs778009885 1069 dbSNP
rs1229342211 1070 dbSNP
rs568437249 1075 dbSNP
rs900810626 1076 dbSNP
rs1211651703 1078 dbSNP
rs529483656 1079 dbSNP
rs1273509759 1101 dbSNP
rs1226647771 1102 dbSNP
rs933756283 1103 dbSNP
rs1305648737 1104 dbSNP
rs555857283 1105 dbSNP
rs1223545990 1106 dbSNP
rs771100668 1113 dbSNP
rs970544405 1118 dbSNP
rs1265937014 1122 dbSNP
rs1353234910 1127 dbSNP
rs1461964406 1127 dbSNP
rs1172709136 1130 dbSNP
rs1429187786 1140 dbSNP
rs1011069741 1141 dbSNP
rs1485535717 1145 dbSNP
rs1022590996 1157 dbSNP
rs981862249 1158 dbSNP
rs1464965613 1169 dbSNP
rs1182544065 1176 dbSNP
rs184231870 1183 dbSNP
rs150196944 1185 dbSNP
rs1205060172 1187 dbSNP
rs991717801 1192 dbSNP
rs999748277 1197 dbSNP
rs1369549439 1202 dbSNP
rs372916146 1206 dbSNP
rs145850210 1211 dbSNP
rs760094271 1213 dbSNP
rs1391172168 1215 dbSNP
rs1435948573 1216 dbSNP
rs991334982 1218 dbSNP
rs7220789 1222 dbSNP
rs1430883374 1236 dbSNP
rs1374959791 1237 dbSNP
rs1171795998 1250 dbSNP
rs1436875456 1261 dbSNP
rs1378394835 1266 dbSNP
rs1336288165 1270 dbSNP
rs982841767 1273 dbSNP
rs1417093608 1284 dbSNP
rs908539508 1286 dbSNP
rs1177739195 1291 dbSNP
rs944101477 1291 dbSNP
rs1277635278 1304 dbSNP
rs1023668605 1305 dbSNP
rs969905453 1311 dbSNP
rs983922124 1316 dbSNP
rs1259770733 1319 dbSNP
rs1380918175 1321 dbSNP
rs909684920 1332 dbSNP
rs1313245710 1339 dbSNP
rs1411001261 1343 dbSNP
rs1355363382 1347 dbSNP
rs1311186014 1348 dbSNP
rs1416697543 1362 dbSNP
rs1992554 1365 dbSNP
rs865887068 1366 dbSNP
rs972654515 1372 dbSNP
rs1451840543 1378 dbSNP
rs922286803 1388 dbSNP
rs776022902 1390 dbSNP
rs188335967 1391 dbSNP
rs1202524207 1393 dbSNP
rs1042017884 1401 dbSNP
rs761174282 1404 dbSNP
rs906200315 1405 dbSNP
rs764955470 1406 dbSNP
rs1203040111 1408 dbSNP
rs76868519 1415 dbSNP
rs958844215 1417 dbSNP
rs1229365204 1421 dbSNP
rs1013121392 1422 dbSNP
rs1291967654 1425 dbSNP
rs1043923745 1430 dbSNP
rs1418887433 1433 dbSNP
rs1341176202 1437 dbSNP
rs1317663197 1440 dbSNP
rs1027646349 1441 dbSNP
rs902651939 1445 dbSNP
rs377440138 1446 dbSNP
rs1457817056 1450 dbSNP
rs983444019 1462 dbSNP
rs1035259969 1463 dbSNP
rs1357640950 1466 dbSNP
rs1450384472 1467 dbSNP
rs908508495 1471 dbSNP
rs1372278067 1472 dbSNP
rs1407797131 1476 dbSNP
rs762306462 1486 dbSNP
rs976786507 1492 dbSNP
rs1190374020 1498 dbSNP
rs1448415350 1513 dbSNP
rs1248259406 1515 dbSNP
rs576356045 1516 dbSNP
rs149000951 1517 dbSNP
rs1468319965 1520 dbSNP
rs76562792 1536 dbSNP
rs1235700195 1538 dbSNP
rs1357640150 1539 dbSNP
rs952139576 1540 dbSNP
rs573538811 1541 dbSNP
rs540770501 1546 dbSNP
rs1328480182 1550 dbSNP
rs1313457443 1551 dbSNP
rs1053588879 1559 dbSNP
rs1392061859 1564 dbSNP
rs1327613589 1565 dbSNP
rs1405934649 1570 dbSNP
rs1395650873 1612 dbSNP
rs559462617 1619 dbSNP
rs1165721794 1626 dbSNP
rs1476103334 1627 dbSNP
rs12936251 1629 dbSNP
rs751407024 1632 dbSNP
rs1452126943 1635 dbSNP
rs577927283 1643 dbSNP
rs1224194393 1648 dbSNP
rs961220748 1649 dbSNP
rs1452759426 1653 dbSNP
rs945279973 1654 dbSNP
rs192170012 1657 dbSNP
rs1298373482 1658 dbSNP
rs139901853 1658 dbSNP
rs1254577127 1676 dbSNP
rs1233875344 1686 dbSNP
rs1369023982 1694 dbSNP
rs1305409109 1700 dbSNP
rs1436930119 1710 dbSNP
rs1473243098 1714 dbSNP
rs545255395 1718 dbSNP
rs1326792088 1722 dbSNP
rs955253444 1725 dbSNP
rs1411550194 1726 dbSNP
rs1370655675 1728 dbSNP
rs781149394 1735 dbSNP
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rs1354203175 1761 dbSNP
rs1427552602 1778 dbSNP
rs994590315 1780 dbSNP
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rs1043471920 1785 dbSNP
rs1350894305 1799 dbSNP
rs1404200115 1800 dbSNP
rs371346240 1801 dbSNP
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rs1210215319 1802 dbSNP
rs1219980668 1802 dbSNP
rs375674589 1802 dbSNP
rs376773815 1802 dbSNP
rs369782069 1803 dbSNP
rs935499136 1804 dbSNP
rs563448447 1805 dbSNP
rs1004442601 1806 dbSNP
rs530871360 1807 dbSNP
rs1012419548 1808 dbSNP
rs1376680188 1809 dbSNP
rs1045058546 1815 dbSNP
rs1399714934 1816 dbSNP
rs33932456 1816 dbSNP
rs1483592850 1817 dbSNP
rs1222333292 1818 dbSNP
rs1245512453 1820 dbSNP
rs752468055 1826 dbSNP
rs1157173164 1841 dbSNP
rs1191891993 1844 dbSNP
rs1419053835 1846 dbSNP
rs1447820528 1848 dbSNP
rs1239218781 1866 dbSNP
rs1211110622 1867 dbSNP
rs1446611401 1876 dbSNP
rs1281932996 1878 dbSNP
rs1170735625 1879 dbSNP
rs1329838657 1882 dbSNP
rs1292610477 1884 dbSNP
rs1231308558 1900 dbSNP
rs887757623 1903 dbSNP
rs976753975 1907 dbSNP
rs1423697687 1920 dbSNP
rs1423808043 1921 dbSNP
rs1321476063 1923 dbSNP
rs563985922 1933 dbSNP
rs1014998212 1939 dbSNP
rs561942817 1941 dbSNP
rs17833555 1945 dbSNP
rs1029869668 1952 dbSNP
rs1474491923 1962 dbSNP
rs1269148084 1966 dbSNP
rs1416109315 1981 dbSNP
rs777967354 1982 dbSNP
rs985343003 1984 dbSNP
rs915051025 1988 dbSNP
rs116921095 1998 dbSNP
rs967687797 1999 dbSNP
rs1465184908 2007 dbSNP
rs1272269300 2008 dbSNP
rs1211765046 2012 dbSNP
rs184057905 2015 dbSNP
rs1343266903 2017 dbSNP
rs1228148186 2022 dbSNP
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rs551606901 2072 dbSNP
rs1056643748 2080 dbSNP
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rs1388796941 2087 dbSNP
rs1456872327 2090 dbSNP
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rs1428007122 2101 dbSNP
rs1241537654 2106 dbSNP
rs894819881 2119 dbSNP
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rs1475476273 5268 dbSNP
rs1267522713 5269 dbSNP
rs1196905974 5271 dbSNP
rs1490733626 5273 dbSNP
rs921675814 5276 dbSNP
rs1000293956 5284 dbSNP
rs1033231925 5286 dbSNP
rs955876892 5287 dbSNP
rs747480852 5289 dbSNP
rs1403410710 5292 dbSNP
rs35200494 5292 dbSNP
rs1347629222 5293 dbSNP
rs1294280913 5301 dbSNP
rs988711226 5308 dbSNP
rs990341204 5315 dbSNP
rs1204302033 5326 dbSNP
rs913360526 5331 dbSNP
rs1410446449 5339 dbSNP
rs946338073 5342 dbSNP
rs1428064382 5348 dbSNP
rs1173624481 5391 dbSNP
rs1249578374 5392 dbSNP
rs1045949545 5395 dbSNP
rs1176216640 5402 dbSNP
rs980134482 5404 dbSNP
rs907247131 5405 dbSNP
rs1439019706 5416 dbSNP
rs755512229 5420 dbSNP
rs1231499861 5421 dbSNP
rs926985062 5426 dbSNP
rs1319207660 5432 dbSNP
rs937341610 5433 dbSNP
rs1181976331 5447 dbSNP
rs1221779269 5453 dbSNP
rs1055683551 5454 dbSNP
rs150481502 5456 dbSNP
rs1302287992 5457 dbSNP
rs1391013602 5464 dbSNP
rs750943928 5472 dbSNP
rs941076417 5475 dbSNP
rs1027509959 5476 dbSNP
rs1397227266 5480 dbSNP
rs886255275 5482 dbSNP
rs1174104677 5483 dbSNP
rs1435777805 5484 dbSNP
rs756566548 5492 dbSNP
rs1004830638 5497 dbSNP
rs1157969602 5498 dbSNP
rs1018863535 5507 dbSNP
rs1416914426 5513 dbSNP
rs868074308 5514 dbSNP
rs929504624 5516 dbSNP
rs1992553 5519 dbSNP
rs183378644 5526 dbSNP
rs890747967 5528 dbSNP
rs1009106238 5538 dbSNP
rs1462745944 5542 dbSNP
rs1039413751 5547 dbSNP
rs1238679778 5560 dbSNP
rs1315349191 5564 dbSNP
rs1309337620 5581 dbSNP
rs900514586 5582 dbSNP
rs1000667162 5593 dbSNP
rs1033123745 5594 dbSNP
rs1329545005 5599 dbSNP
rs974406579 5601 dbSNP
rs1458004920 5602 dbSNP
rs1454481606 5606 dbSNP
rs955847331 5607 dbSNP
rs1010110448 5615 dbSNP
rs749633551 5625 dbSNP
rs1450916124 5633 dbSNP
rs1024145483 5634 dbSNP
rs1158826477 5641 dbSNP
rs1440732375 5643 dbSNP
rs374651801 5649 dbSNP
rs113576184 5650 dbSNP
rs1257034893 5659 dbSNP
rs1434516963 5663 dbSNP
rs957155094 5666 dbSNP
rs926926645 5674 dbSNP
rs990282057 5676 dbSNP
rs1217565743 5682 dbSNP
rs913423160 5690 dbSNP
rs1348286494 5691 dbSNP
rs540859390 5693 dbSNP
rs946199168 5701 dbSNP
rs1227453779 5702 dbSNP
rs962427934 5703 dbSNP
rs974215990 5707 dbSNP
rs1341466947 5709 dbSNP
rs1196324181 5711 dbSNP
rs1265999646 5713 dbSNP
rs1449409275 5726 dbSNP
rs981698365 5728 dbSNP
rs565478700 5729 dbSNP
rs928894024 5732 dbSNP
rs1054587123 5741 dbSNP
rs1454974868 5742 dbSNP
rs1168425501 5761 dbSNP
rs1369559112 5767 dbSNP
rs937561049 5772 dbSNP
rs913004504 5781 dbSNP
rs1169017554 5782 dbSNP
rs748533908 5784 dbSNP
rs532897254 5794 dbSNP
rs1289409516 5803 dbSNP
rs1224462538 5813 dbSNP
rs1385199367 5819 dbSNP
rs185940931 5830 dbSNP
rs562509013 5832 dbSNP
rs1465973072 5837 dbSNP
rs944924742 5844 dbSNP
rs376271388 5846 dbSNP
rs900484464 5852 dbSNP
rs548280361 5858 dbSNP
rs1343264155 5863 dbSNP
rs544053709 5873 dbSNP
rs1388904779 5878 dbSNP
rs1047579869 5881 dbSNP
rs1054539014 5882 dbSNP
rs1425942621 5883 dbSNP
rs1171471291 5885 dbSNP
rs891844814 5886 dbSNP
rs886305260 5891 dbSNP
rs146637577 5893 dbSNP
rs1018748572 5896 dbSNP
rs1452008086 5909 dbSNP
rs1249533572 5911 dbSNP
rs901767063 5915 dbSNP
rs1215087417 5923 dbSNP
rs1273423146 5924 dbSNP
rs996064101 5925 dbSNP
rs1222390810 5927 dbSNP
rs1028675559 5932 dbSNP
rs1320732129 5939 dbSNP
rs957242714 5943 dbSNP
rs1024114333 5946 dbSNP
rs770124907 5974 dbSNP
rs1464112101 5982 dbSNP
rs1186292764 5984 dbSNP
rs1034298500 5988 dbSNP
rs1403091887 5993 dbSNP
rs1011353655 6003 dbSNP
rs1332576557 6005 dbSNP
rs1469383257 6012 dbSNP
rs1427256137 6018 dbSNP
rs1174584265 6020 dbSNP
rs1260023425 6029 dbSNP
rs1478473640 6029 dbSNP
rs1363083383 6031 dbSNP
rs1179405474 6037 dbSNP
rs1430692559 6038 dbSNP
rs7209070 6043 dbSNP
rs967062567 6046 dbSNP
rs981584919 6051 dbSNP
rs191183588 6057 dbSNP
rs1202911269 6081 dbSNP
rs928779427 6082 dbSNP
rs1280094691 6090 dbSNP
rs1219504122 6093 dbSNP
rs771707647 6095 dbSNP
rs973804819 6098 dbSNP
rs958967959 6099 dbSNP
rs1238447376 6101 dbSNP
rs1167271056 6102 dbSNP
rs1025267055 6105 dbSNP
rs141329431 6109 dbSNP
rs986526649 6110 dbSNP
rs1404076045 6115 dbSNP
rs111580249 6120 dbSNP
rs919970582 6124 dbSNP
rs1336245726 6139 dbSNP
rs931296222 6150 dbSNP
rs145118230 6154 dbSNP
rs1386834039 6157 dbSNP
rs569253680 6166 dbSNP
rs1380643595 6168 dbSNP
rs1382621389 6169 dbSNP
rs908621402 6185 dbSNP
rs1442681553 6189 dbSNP
rs944918344 6190 dbSNP
rs944068840 6199 dbSNP
rs538599494 6201 dbSNP
rs536286278 6219 dbSNP
rs1235069628 6222 dbSNP
rs1040243404 6231 dbSNP
rs1327888713 6234 dbSNP
rs141180992 6248 dbSNP
rs1206389899 6254 dbSNP
rs112139864 6255 dbSNP
rs57702000 6255 dbSNP
rs866387830 6255 dbSNP
rs67239944 6256 dbSNP
rs1356355187 6257 dbSNP
rs372010199 6257 dbSNP
rs1205859736 6259 dbSNP
rs371235610 6259 dbSNP
rs975389264 6260 dbSNP
rs371999629 6261 dbSNP
rs375586039 6262 dbSNP
rs1262160859 6268 dbSNP
rs1245979689 6275 dbSNP
rs922244714 6287 dbSNP
rs879482256 6307 dbSNP
rs1487040759 6310 dbSNP
rs901652511 6313 dbSNP
rs374550525 6314 dbSNP
rs996118306 6316 dbSNP
rs1050759009 6318 dbSNP
rs554929588 6319 dbSNP
rs1190727729 6321 dbSNP
rs1418615958 6323 dbSNP
rs1472329165 6324 dbSNP
rs1045870911 6327 dbSNP
rs1011661285 6340 dbSNP
rs1415890541 6348 dbSNP
rs1182326796 6350 dbSNP
rs1347237520 6352 dbSNP
rs1239840294 6354 dbSNP
rs11653161 6358 dbSNP
rs967114957 6361 dbSNP
rs775011225 6364 dbSNP
rs540724227 6377 dbSNP
rs1373413522 6378 dbSNP
rs1222237631 6380 dbSNP
rs1320244877 6388 dbSNP
rs760216372 6392 dbSNP
rs1313438771 6393 dbSNP
rs1338874730 6394 dbSNP
rs1002555706 6398 dbSNP
rs1349299690 6420 dbSNP
rs1402151250 6424 dbSNP
rs1341365390 6425 dbSNP
rs1035845042 6426 dbSNP
rs137922082 6427 dbSNP
rs1434057059 6435 dbSNP
rs995837893 6437 dbSNP
rs1308676337 6443 dbSNP
rs759618012 6452 dbSNP
rs1317212318 6454 dbSNP
rs991791891 6456 dbSNP
rs577466961 6457 dbSNP
rs986496955 6477 dbSNP
rs1019353625 6478 dbSNP
rs549207379 6478 dbSNP
rs906911815 6479 dbSNP
rs202188367 6481 dbSNP
rs1267766083 6482 dbSNP
rs1002192660 6483 dbSNP
rs1487730548 6492 dbSNP
rs1213608956 6495 dbSNP
rs1248793949 6501 dbSNP
rs974980464 6503 dbSNP
rs1437751448 6505 dbSNP
rs983194073 6506 dbSNP
rs1482762478 6510 dbSNP
rs908512325 6513 dbSNP
rs1311036683 6520 dbSNP
rs1282917805 6523 dbSNP
rs1217666611 6529 dbSNP
rs759564781 6530 dbSNP
rs944121333 6535 dbSNP
rs544912099 6540 dbSNP
rs1410265632 6550 dbSNP
rs572764878 6552 dbSNP
rs936235859 6563 dbSNP
rs1419836524 6565 dbSNP
rs1333233325 6567 dbSNP
rs1465722257 6571 dbSNP
rs563007919 6576 dbSNP
rs183669779 6577 dbSNP
rs913216134 6578 dbSNP
rs1427774405 6583 dbSNP
rs149478586 6590 dbSNP
rs1174156852 6593 dbSNP
rs1480476872 6603 dbSNP
rs1236908304 6628 dbSNP
rs1201029251 6629 dbSNP
rs1369934941 6636 dbSNP
rs1045840919 6649 dbSNP
rs931794638 6653 dbSNP
rs1208366972 6654 dbSNP
rs1439388658 6660 dbSNP
rs907323370 6661 dbSNP
rs1050230971 6663 dbSNP
rs1299318883 6672 dbSNP
rs1373443528 6673 dbSNP
rs1385839488 6674 dbSNP
rs559714148 6681 dbSNP
rs1346141774 6682 dbSNP
rs527425429 6692 dbSNP
rs1311427948 6696 dbSNP
rs1281666626 6697 dbSNP
rs1341995619 6698 dbSNP
rs1447393009 6705 dbSNP
rs551812788 6713 dbSNP
rs1210225796 6725 dbSNP
rs570313826 6727 dbSNP
rs533817167 6736 dbSNP
rs1481016796 6745 dbSNP
rs902840786 6755 dbSNP
rs1467068433 6756 dbSNP
rs151051114 6758 dbSNP
rs57422384 6758 dbSNP
rs1251421927 6760 dbSNP
rs1455408347 6762 dbSNP
rs1002609433 6766 dbSNP
rs1035396384 6772 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
     
Conditions HEK293S
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... HITS-CLIP data was present in GSM1084079. RNA binding protein: AGO2. Condition:CLIP_hippuristanol_rep2_AbnovaAb HITS-CLIP data was present in GSM1084078. RNA binding protein: AGO2. Condition:CLIP_nohippuristanol_rep2_AbnovaAb HITS-CLIP data was present in GSM1084073. RNA binding protein: AGO2. Condition:CLIP_hippuristanol_rep1_AbnovaAb HITS-CLIP data was present in GSM1084068. RNA binding protein: AGO2. Condition:CLIP_noemetine_SigmaAb HITS-CLIP data was present in GSM1084067. RNA binding protein: AGO2. Condition:CLIP_emetine_SantaCruzAb HITS-CLIP data was present in GSM1084065. RNA binding protein: AGO2. Condition:CLIP_emetine_AbnovaAb HITS-CLIP data was present in GSM1084064. RNA binding protein: AGO2. Condition:CLIP_noemetine_AbnovaAb HITS-CLIP data was present in GSM1084047. RNA binding protein: AGO2. Condition:CLIP_arsenite_rep4 ...

- Karginov FV; Hannon GJ, 2013, Genes & development.

Article - Karginov FV; Hannon GJ
- Genes & development, 2013
When adapting to environmental stress, cells attenuate and reprogram their translational output. In part, these altered translation profiles are established through changes in the interactions between RNA-binding proteins and mRNAs. The Argonaute 2 (Ago2)/microRNA (miRNA) machinery has been shown to participate in stress-induced translational up-regulation of a particular mRNA, CAT-1; however, a detailed, transcriptome-wide understanding of the involvement of Ago2 in the process has been lacking. Here, we profiled the overall changes in Ago2-mRNA interactions upon arsenite stress by cross-linking immunoprecipitation (CLIP) followed by high-throughput sequencing (CLIP-seq). Ago2 displayed a significant remodeling of its transcript occupancy, with the majority of 3' untranslated region (UTR) and coding sequence (CDS) sites exhibiting stronger interaction. Interestingly, target sites that were destined for release from Ago2 upon stress were depleted in miRNA complementarity signatures, suggesting an alternative mode of interaction. To compare the changes in Ago2-binding patterns across transcripts with changes in their translational states, we measured mRNA profiles on ribosome/polysome gradients by RNA sequencing (RNA-seq). Increased Ago2 occupancy correlated with stronger repression of translation for those mRNAs, as evidenced by a shift toward lighter gradient fractions upon stress, while release of Ago2 was associated with the limited number of transcripts that remained translated. Taken together, these data point to a role for Ago2 and the mammalian miRNAs in mediating the translational component of the stress response.
LinkOut: [PMID: 23824327]
CLIP-seq Support 1 for dataset GSM1084047
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293S / CLIP_arsenite_rep4
Location of target site ENST00000284061.3 | 3UTR | ACAUGACUGCACUCCAGCCUGGGCAAC
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23824327 / GSE44404
CLIP-seq Viewer Link
CLIP-seq Support 2 for dataset GSM1084064
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293S / CLIP_noemetine_AbnovaAb
Location of target site ENST00000284061.3 | 3UTR | ACAUGACUGCACUCCAGCCUGGGCAAC
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23824327 / GSE44404
CLIP-seq Viewer Link
CLIP-seq Support 3 for dataset GSM1084065
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293S / CLIP_emetine_AbnovaAb
Location of target site ENST00000284061.3 | 3UTR | ACAUGACUGCACUCCAGCCUGGGCAAC
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23824327 / GSE44404
CLIP-seq Viewer Link
CLIP-seq Support 4 for dataset GSM1084067
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293S / CLIP_emetine_SantaCruzAb
Location of target site ENST00000284061.3 | 3UTR | ACAUGACUGCACUCCAGCCUGGGC
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23824327 / GSE44404
CLIP-seq Viewer Link
CLIP-seq Support 5 for dataset GSM1084068
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293S / CLIP_noemetine_SigmaAb
Location of target site ENST00000284061.3 | 3UTR | ACAUGACUGCACUCCAGCCUGGGCAAC
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23824327 / GSE44404
CLIP-seq Viewer Link
CLIP-seq Support 6 for dataset GSM1084073
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293S / CLIP_hippuristanol_rep1_AbnovaAb
Location of target site ENST00000284061.3 | 3UTR | GAGCGGAGAUCACAUGACUGCACUCCAGCCUGGGC
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23824327 / GSE44404
CLIP-seq Viewer Link
CLIP-seq Support 7 for dataset GSM1084078
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293S / CLIP_nohippuristanol_rep2_AbnovaAb
Location of target site ENST00000284061.3 | 3UTR | ACAUGACUGCACUCCAGCCUGGGCAAC
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23824327 / GSE44404
CLIP-seq Viewer Link
CLIP-seq Support 8 for dataset GSM1084079
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293S / CLIP_hippuristanol_rep2_AbnovaAb
Location of target site ENST00000284061.3 | 3UTR | ACAUGACUGCACUCCAGCCUGGGCAAC
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23824327 / GSE44404
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
GSE28544 Breast cancer -0.715 4.3e-5 -0.585 1.3e-3 24 Click to see details
GSE42095 Differentiated embryonic stem cells -0.449 1.6e-2 -0.408 2.7e-2 23 Click to see details
GSE28260 Renal cortex and medulla 0.437 6.8e-2 0.467 5.4e-2 13 Click to see details
GSE27834 Pluripotent stem cells -0.363 8.4e-2 -0.315 1.2e-1 16 Click to see details
GSE15076 Monocyte-derived dendritic cells -0.48 1.7e-1 -0.543 1.3e-1 6 Click to see details
GSE19350 CNS germ cell tumors -0.277 1.9e-1 -0.255 2.1e-1 12 Click to see details
GSE35602 Colorectal cancer stromal tissue 0.165 2.2e-1 0.091 3.3e-1 25 Click to see details
GSE32688 Pancreatic cancer 0.132 2.4e-1 0.238 9.5e-2 32 Click to see details
GSE21849 B cell lymphoma -0.128 2.5e-1 0.304 5.4e-2 29 Click to see details
GSE26953 Aortic valvular endothelial cells 0.135 2.6e-1 0.133 2.7e-1 24 Click to see details
GSE14794 Lymphoblastoid cells 0.059 2.9e-1 0.055 3.0e-1 90 Click to see details
GSE38974 Chronic obstructive pulmonary disease 0.081 3.5e-1 0.178 2.0e-1 25 Click to see details
GSE17306 Multiple myeloma 0.042 3.9e-1 0.192 9.3e-2 49 Click to see details
GSE38226 Liver fibrosis 0.058 4.0e-1 0.193 2.0e-1 21 Click to see details
GSE17498 Multiple myeloma 0.015 4.6e-1 0.055 3.7e-1 40 Click to see details
GSE34608 Pulmonary tuberculosis and sarcoidosis 0.019 4.7e-1 -0.164 2.4e-1 20 Click to see details
GSE21687 Ependynoma primary tumors 0 5.0e-1 -0.022 4.3e-1 64 Click to see details
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
STAD -0.877 0 -0.738 0.02 8 Click to see details
THCA 0.601 0.14 0.800 0.05 5 Click to see details
LIHC -0.138 0.17 -0.164 0.13 49 Click to see details
KICH 0.326 0.22 0.476 0.12 8 Click to see details
HNSC -0.624 0.29 -0.500 0.33 3 Click to see details
KIRC -0.071 0.36 -0.133 0.25 29 Click to see details
KIRP 0.121 0.38 -0.100 0.4 9 Click to see details
CHOL -0.12 0.38 -0.083 0.42 9 Click to see details
ESCA -0.18 0.39 0.000 0.5 5 Click to see details
ESCA -0.18 0.39 0.000 0.5 5 Click to see details
ESCA -0.18 0.39 0.000 0.5 5 Click to see details
ESCA -0.18 0.39 0.000 0.5 5 Click to see details
ESCA -0.18 0.39 0.000 0.5 5 Click to see details
ESCA -0.18 0.39 0.000 0.5 5 Click to see details
MiRNA Regulatory Network:
Functional analysis:
Strong evidence (reporter assay, western blot, qRT-PCR or qPCR) Other evidence
Transcription factor regulation Circular RNA sponge
534 hsa-miR-122-5p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT000012 CYP7A1 cytochrome P450 family 7 subfamily A member 1 3 1
MIRT006421 WNT1 Wnt family member 1 3 1
MIRT000364 IGF1R insulin like growth factor 1 receptor 4 3
MIRT000365 SRF serum response factor 4 1
MIRT000663 RAC1 Rac family small GTPase 1 5 2
MIRT000717 RHOA ras homolog family member A 2 2
MIRT006123 PRKRA protein activator of interferon induced protein kinase EIF2AK2 4 1
MIRT003006 CCNG1 cyclin G1 4 4
MIRT003081 ANK2 ankyrin 2 3 1
MIRT003082 NFATC2IP nuclear factor of activated T-cells 2 interacting protein 3 1
MIRT003083 ENTPD4 ectonucleoside triphosphate diphosphohydrolase 4 3 1
MIRT003084 ANXA11 annexin A11 4 2
MIRT003085 ALDOA aldolase, fructose-bisphosphate A 3 2
MIRT003086 RAB6B RAB6B, member RAS oncogene family 3 1
MIRT003087 RAB11FIP1 RAB11 family interacting protein 1 4 2
MIRT003088 FOXP1 forkhead box P1 3 1
MIRT003089 MECP2 methyl-CpG binding protein 2 3 2
MIRT003090 NCAM1 neural cell adhesion molecule 1 4 3
MIRT003091 UBAP2 ubiquitin associated protein 2 3 1
MIRT003092 TBX19 T-box 19 3 1
MIRT003093 AACS acetoacetyl-CoA synthetase 3 1
MIRT003094 DUSP2 dual specificity phosphatase 2 3 1
MIRT003095 ATP1A2 ATPase Na+/K+ transporting subunit alpha 2 3 1
MIRT003097 MAPK11 mitogen-activated protein kinase 11 3 1
MIRT003098 FUNDC2 FUN14 domain containing 2 3 1
MIRT003099 AKT3 AKT serine/threonine kinase 3 3 3
MIRT003100 TPD52L2 tumor protein D52 like 2 4 3
MIRT003102 GALNT10 polypeptide N-acetylgalactosaminyltransferase 10 4 2
MIRT003103 G6PC3 glucose-6-phosphatase catalytic subunit 3 4 2
MIRT003104 AP3M2 adaptor related protein complex 3 mu 2 subunit 3 1
MIRT003105 SLC7A1 solute carrier family 7 member 1 4 4
MIRT003106 XPO6 exportin 6 3 1
MIRT003107 FOXJ3 forkhead box J3 3 1
MIRT003108 SLC7A11 solute carrier family 7 member 11 3 1
MIRT003109 TRIB1 tribbles pseudokinase 1 3 1
MIRT003110 EGLN3 egl-9 family hypoxia inducible factor 3 3 1
MIRT003111 NUMBL NUMB like, endocytic adaptor protein 3 1
MIRT003112 ADAM17 ADAM metallopeptidase domain 17 3 5
MIRT003727 DSTYK dual serine/threonine and tyrosine protein kinase 3 2
MIRT003728 FAM117B family with sequence similarity 117 member B 3 1
MIRT004364 BCL2L2 BCL2 like 2 4 2
MIRT004527 PRKAB1 protein kinase AMP-activated non-catalytic subunit beta 1 2 1
MIRT004879 ADAM10 ADAM metallopeptidase domain 10 4 1
MIRT005782 ACVR1C activin A receptor type 1C 1 1
MIRT007007 PTPN1 protein tyrosine phosphatase, non-receptor type 1 1 1
MIRT007081 NT5C3A 5'-nucleotidase, cytosolic IIIA 1 1
MIRT007082 P4HA1 prolyl 4-hydroxylase subunit alpha 1 1 1
MIRT007083 ZNF395 zinc finger protein 395 1 1
MIRT007084 SOCS1 suppressor of cytokine signaling 1 1 1
MIRT023396 PKM pyruvate kinase, muscle 5 3
MIRT023398 CLIC4 chloride intracellular channel 4 4 4
MIRT023403 CDK4 cyclin dependent kinase 4 2 2
MIRT438005 MEF2D myocyte enhancer factor 2D 1 2
MIRT438639 AXL AXL receptor tyrosine kinase 1 1
MIRT438655 NOD2 nucleotide binding oligomerization domain containing 2 3 1
MIRT438734 FUT8 fucosyltransferase 8 3 1
MIRT003079 GTF2B general transcription factor IIB 2 1
MIRT003080 GYS1 glycogen synthase 1 4 2
MIRT023217 SSR3 signal sequence receptor subunit 3 1 1
MIRT023218 PHOX2A paired like homeobox 2a 1 1
MIRT023219 DZIP1L DAZ interacting zinc finger protein 1 like 1 1
MIRT023220 GSTM2 glutathione S-transferase mu 2 1 1
MIRT023221 RAI14 retinoic acid induced 14 1 1
MIRT023222 STARD13 StAR related lipid transfer domain containing 13 1 1
MIRT023223 CNN3 calponin 3 1 1
MIRT023224 A2M alpha-2-macroglobulin 1 1
MIRT023225 EFCAB6 EF-hand calcium binding domain 6 1 1
MIRT023226 GLOD4 glyoxalase domain containing 4 1 1
MIRT023227 CALR calreticulin 1 1
MIRT023228 POFUT1 protein O-fucosyltransferase 1 1 1
MIRT023229 PYGO1 pygopus family PHD finger 1 1 1
MIRT023230 CDY2B chromodomain Y-linked 2B 1 1
MIRT023231 CDC42EP3 CDC42 effector protein 3 1 1
MIRT023232 CS citrate synthase 2 2
MIRT023233 RNF170 ring finger protein 170 2 2
MIRT023234 GTF3C6 general transcription factor IIIC subunit 6 1 1
MIRT023235 ZNF321P zinc finger protein 321, pseudogene 1 1
MIRT023236 LAMP1 lysosomal associated membrane protein 1 1 1
MIRT023237 SLC52A2 solute carrier family 52 member 2 1 1
MIRT023238 ZNF658 zinc finger protein 658 1 1
MIRT023239 ATP13A3 ATPase 13A3 1 1
MIRT023240 CPNE5 copine 5 1 1
MIRT023241 KATNAL1 katanin catalytic subunit A1 like 1 1 1
MIRT023242 TMEM136 transmembrane protein 136 1 1
MIRT023243 ATP11A ATPase phospholipid transporting 11A 1 1
MIRT023244 TMEM74 transmembrane protein 74 1 1
MIRT023245 ANKRD10 ankyrin repeat domain 10 1 1
MIRT023246 TBL1XR1 transducin beta like 1 X-linked receptor 1 1 1
MIRT023247 USP10 ubiquitin specific peptidase 10 1 1
MIRT023248 AKAP11 A-kinase anchoring protein 11 1 1
MIRT023249 BACH2 BTB domain and CNC homolog 2 1 1
MIRT023250 HCCS holocytochrome c synthase 1 1
MIRT023251 Slc7a1 solute carrier family 7 (cationic amino acid transporter, y+ system), member 1 1 1
MIRT023252 GTDC2 protein O-linked mannose N-acetylglucosaminyltransferase 2 (beta 1,4-) 1 1
MIRT023253 CTPS1 CTP synthase 1 1 1
MIRT023254 SLC44A1 solute carrier family 44 member 1 1 1
MIRT023255 CLSPN claspin 1 1
MIRT023256 RABGEF1 RAB guanine nucleotide exchange factor 1 1 1
MIRT023257 FBXO7 F-box protein 7 1 1
MIRT023258 NCDN neurochondrin 1 1
MIRT023259 SOX2 SRY-box 2 1 1
MIRT023260 ZNF618 zinc finger protein 618 1 1
MIRT023261 ABLIM1 actin binding LIM protein 1 1 1