Gene Symbol |
WWC1
|
Synonyms |
HBEBP3, HBEBP36, KIBRA, MEMRYQTL, PPP1R168 |
Description |
WW and C2 domain containing 1 |
Transcript |
NM_001161661
|
Other Transcripts |
NM_001161662
,
NM_015238
|
Expression |
|
Putative miRNA Targets on WWC1 |
|
3'UTR of WWC1 (miRNA target sites are highlighted) |
>WWC1|NM_001161661|3'UTR
1 TCGCCAGAAAAGTATTTCCTTTGTTCCACTGACCAGGCTGTGAACATTGACTGTGGCTAAAGTTATTTATGTGGTGTTAT
81 ATGAAGGTACTGAGTCACAAGTCCTCTAGTGCTCTTGTTGGTTTGAAGATGAACCGACTTTTTAGTTTGGGTCCTACTGT
161 TGTTATTAAAAACAGAACAAAAACAAAACACACACACACACAAAAACAGAAACAAAAAAAACCAGCATTAAAATAATAAG
241 ATTGTATAGTTTGTATATTTAGGAGTGTATTTTTGGGAAAGAAAATTTAAATGAACTAAAGCAGTATTGAGTTGCTGCTC
321 TTCTTAAAATCGTTTAGATTTTTTTTGGTTTGTACAGCTCCACCTTTTAGAGGTCTTACTGCAATAAGAAGTAATGCCTG
401 GGGGACGGTAATCCTAATAGGACGTCCCGCACTTGTCACAGTACAGCTAATTTTTCCTAGTTAACATATTTTGTACAATA
481 TTAAAAAAATGCACAGAAACCATTGGGGGGGATTCAGAGGTGCATCCACGGATCTTCTTGAGCTGTGACGTGTTTTTATG
561 TGGCTGCCCAACGTGGAGCGGGCAGTGTGATAGGCTGGGTGGGCTAAGCAGCCTAGTCTATGTGGGTGACAGGCCACGCT
641 GGTCTCAGATGCCCAGTGAAGCCACTAACATGAGTGAGGGGAGGGCTGTGGGGAACTCCATTCAGTTTTATCTCCATCAA
721 TAAAGTGGCCTTTCAAAAAGAATCTTCCTCTTGCTCTCTTTTTCTTTCCTACCCCTCACTTCATCTGTTTCCCTGATTTT
801 TGACTCTCCCCTTTCCAGTCATTTCTTTCCCACCCATCCGCAGTCCTGGAAACATTTATTTTTTCTTTTGCCCACTGTTT
881 TCATTTGCTCATTAAATTAAAATGACTGCTCGGCTCATTGGGAATCCACATCCCCAAGTTAGACTGGGGATATGCTCTCT
961 GTACTGTCTCCTTCTATGGAATTCCACCCCACCCAGAGAGAGATGACTTCACAGTTTGTTCATATGAGCATCATCCCATG
1041 TCGTCCCCAACCCAGGGGCTGGTAGGTGCTACAGCTTGTGCTTCATGCTGCTCCTGTGGCCCCTATTCCTACCCAGCTCA
1121 GAGCTTTGCAGGGTCTACTGCAGACAATCAGAAGTCAGTTTCTAACAAATAGCAACAGCCACAAATCTCTTCCTCCTTCC
1201 TCTCTGACATTACCCTGTGCAACTTTTCTCAAAGTCTGTTGCACCACTCAGCAAAGCAAGTTGCACCAGCTATATCAGAA
1281 TCACCTGGGGCAGCCTATTAAAAATGCAGACTGTTGAGACCATCCTGGCTAACACGGTGAAACCCTGTCTCTACTAAAAA
1361 TACAAAAAATTAGCCGGCCGTGGTGGCGGGCAGCTACTCGGGAGGCTGAGGCAGGAGAATGACCTGAACCTGGGAGGCAG
1441 AGCTTGCAGTGAGCTGAGATTGTGCCACTGCACTCCAGCCTGGGTGACAGAGCAAGACTCCGTCTCAAAAAAAAAAAAAA
1521 AAGAAAAATGCAGACTGGCTGGCGCGGTGGCTCATGCTTGTAATCCCAGCACTTTGGGAGGCTGAGGCGGGCAGATCAAC
1601 TGAGATCGGGGGTTCGAGACCAGCCTGATCAACATGGAGAAACCTGGTCTCTACTAAAAATACATAATTAGCTGGGCGTA
1681 GTGGCGCATACCTGTAATCCCAGCTACTTGGGTGGCCAAGGCTTGAACCCAGGAGGCGGAGGTTGCGGTGAGCCGAGATG
1761 GCGCCATTGACTCCAGCCTGGGCAACAAGAGCGTAACTCCATCTCAAAAAAATAATAATAATAAAAATAAAATGCAGACT
1841 GTCAGGTCCTCTCTAGACCCACTGAACTATCCCGCCCACCCTGGGACGGTCCCCAGTGCCAGTGTTTTACCCATGTTCCC
1921 TCTGTAAGTCTTATGCACACCGCAATTTGAGAGCCCCACTGGTATAAAGTGAGTGAAACCCAGGCAGAGACAGGCAAAAT
2001 GGTGAGGCCCGCATCCTATTGGTGAGTCACACAGGGAACGCTGAAATTCATGGCCTTCTCCAGGCTACTGGGAACCCATG
2081 GGCGGTGATGGAGGGAGTGGTGCCACCTTCACTTGCTGCTGAGGCTCTTCCCCCTCTCCCCAGCATACTCCTTACCTGGC
2161 TGTCTCTCCTCATGTATAAGGAACCTATAGTGGTGTAGAATCTACTCTTCTTCCCCCTGTGGCTTCCAGGCCCCCCTGTA
2241 TAGCTGCTATCCAGCCCGATTTCTCACCACTGGCCCAGGGCTTCCTCCTGCCCCGTGGCTTCACGTCTCTGAACACATCA
2321 ATCTCTGATGTTCTCTCTCCTTCCATTGAATTCCACCAGACACATTCAGGGTTTACTTCGTAATGTCTTCATATGAGTAT
2401 CAATCAACACCTTCCCCAACTCAATTGTACTAGGTTGTAGAGCACAAGGATGGTCTCGTGCTGCTCTGTGGCACCTGTGC
2481 CTACACTCCTCTGAGCTTTGAGGAGGCTGCTCTCTTTGCTGACCCCATGATCTTTTCTGCCCTTCTGTTAAGGGCATTGG
2561 CCACAGCAACGGGGCAAATGCCCCAAGCTGGCTGTAAGTGACCCATCCCTTTGGCTCCCATGATTAGACCAAGGAGAGGC
2641 ATGGGGTCCAGCTGAGCCATTCAGAACCATTCCTTAGCATTTTCCACTCAAAGGTTAGAGATGAGATTTTCTCTTCCCAA
2721 GGCTACCTCTGGCCATGGTTCCAGCTTCATGGGGGCAATGGGATTAGGAAAATGAGGTCAACCTGCAAAGGAAAGCAGAT
2801 GCAAGAGATGGAGACAGAATGGGGGTGTCCTGGGGATCTTGGAGCCTGAATTCATTGGCACAAAAGGCAGCAGCATCCTC
2881 ACTGTATCTGCAGTCCATTTGGACTCAATAAAAACTTTGAAAGTCACATGTGTTATGGAATTCCTTCTCAGTGACACATT
2961 CATCTGTGCTCAGTTGTCCCAGCAAGGGTCAGCCCCTCATACCCCTGCAGCATCCGCTGCTATGAAGCAGAGCTGTAAAC
3041 GCCCTCCCTGTGTATAGGAAAAGCTACATGGAGCAAATCCTCCTGCCTGAAGAAGTGCATCTCAGCATCACTTCAGCTGT
3121 CGGGGCATTTGTGGGGAGAACCAGACCACCTCTGCGGAAGGCAGCAGACCCTCTTCCAGCCATGGATGGAGTTGAATTCT
3201 CTATAAACGGTTCACCAGCAAACCACCAATACATTCCATTGTTTGCCTAGAGAGAAATTTAAAAATAAATAAATGTTCAC
3281 TTATAAAAAAAAAAAAAAAA
Target sites
Provided by authors
Predicted by miRanda
DRVs
SNPs
DRVs & SNPs
|
miRNA-target interactions (Predicted by miRanda) |
ID | Duplex structure | Position | Score | MFE |
1
|
miRNA 3' guUUGUGGUAACAG-UGUGAGGu 5'
::|||| || | |||||||
Target 5' gtGGCACCTGTGCCTACACTCCt 3'
|
2468 - 2490
|
160.00 |
-18.30 |
2
|
miRNA 3' guUUGUGGUAACAGUGUGAGGu 5'
| ||||| | |||:|||
Target 5' aaACCACCAAT---ACATTCCa 3'
|
3220 - 3238
|
141.00 |
-16.30 |
3
|
miRNA 3' guuuguggUAACA-----GUGUGAGGu 5'
||||| ::||||||
Target 5' gagctgagATTGTGCCACTGCACTCCa 3'
|
1451 - 1477
|
134.00 |
-13.60 |
|
DRVs in gene 3'UTRs |
|
SNPs in gene 3'UTRs |
|