pre-miRNA Information | |
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pre-miRNA | mmu-mir-16-1 |
Genomic Coordinates | chr14: 61631880 - 61631972 |
Description | Mus musculus miR-16-1 stem-loop |
Comment | None |
RNA Secondary Structure | |
pre-miRNA | mmu-mir-16-2 |
Genomic Coordinates | chr3: 69009902 - 69009996 |
Synonyms | Mirn16, Mirn16-1, miR-16, mir-16-1, Mir16-1, Mirn16-2, mir-16-2, Mir16-2 |
Description | Mus musculus miR-16-2 stem-loop |
Comment | None |
RNA Secondary Structure |
Mature miRNA Information | |
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Mature miRNA | mmu-miR-16-5p |
Sequence | 17| UAGCAGCACGUAAAUAUUGGCG |38 |
Evidence | Experimental |
Experiments | Cloned |
Putative Targets |
Biomarker Information |
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Gene Information | |||||||||||||||||||||
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Gene Symbol | Bcl2 | ||||||||||||||||||||
Synonyms | AW986256, Bcl-2, C430015F12Rik, D630044D05Rik, D830018M01Rik | ||||||||||||||||||||
Description | B cell leukemia/lymphoma 2 | ||||||||||||||||||||
Transcript | NM_009741 | ||||||||||||||||||||
Other Transcripts | NM_177410 | ||||||||||||||||||||
Expression | |||||||||||||||||||||
Putative miRNA Targets on Bcl2 | |||||||||||||||||||||
3'UTR of Bcl2 (miRNA target sites are highlighted) |
>Bcl2|NM_009741|3'UTR 1 GGTCGACAAACCTGCCCCAAACAAATATGCAAAAGGTTCACTAAAGCAGTAGAAATTATATGCATTATCAATGATGTACC 81 ATGAAACAAAGTTGTGATCTTTTTTTAAAGCAGAACACACACACACACACACACACACACACACACACACACACACACAC 161 ACACACACATTCAGGCAAATGGTCGAATCAGCTATTTACTGCCAAAGGGAAATATCATTTATTTTTTACATTATTTAGGA 241 AAAAAAAGATTTATTTATTTAAGACAGTTCCACCGAAACTCCAGGCTTTGAAAACCGAACCAGGAATTGCCAAGAAACGT 321 GTGGCTCCACCTGCTGGCCTGTGCCTGTGGTCATGGATCTGTTTTCAATATTGGCCAAACTGGCCCACCATCTAAAGAGC 401 AAGTGGCACAGGACCCTGACGGCTGGGGAAGCCTGCAGTCTGGCTGCTAGAAGCTTTGAAGAAGGCTTCAATGTGATCTC 481 TATATACTGGCCCTGGGGGCCAGGATGCTAGAAGGAGCAGGTGCCTACAAGAAAGCCTGGTCTTCCATGGACTGGAGAAG 561 GGACTTTTGTATATGACTCACATGGTACATACCCAGTCAGAGGACAAAGGCTGGAAACTTCAGATGAACTTGGTACCCAC 641 TGAGACTTCCCTGCTGAAAGACAGTGGTGGGAAAATGCCCTTAATCATAGGAAATTATTTTTTTAAGCTACCAATTGTGC 721 CGAGAAGCATTTTAGCAGTTTATACAATATCATCCAGTACCTTAAGCCCTGACTGTAGATAATCATATATTTTGGATACG 801 CACACCCCCTCCTCCAATACTCACTCTGTCTGAGGAGGAAACAAAGGCTTCTGGATTCCAGGAAGTGGATGTGTGACGAC 881 TTCTTCAGCATCAGGAAGAATGGGGTCACCTAGCGCTTCAGGCAGCCACAAGTGCCTGCTTTATGGAGACCAACATCTGC 961 AGAACCTCCCTGTGGCTCAGCAACTTGGCCTGGGCAGCCTGCCCTGAGTGTGGCCCTCACCAGCCTCCTCACCGGGTTTG 1041 GAACAGAGCAGCTGGTCTCTGAGCTCAGACTTACCCAGTAAGAAAGAGCAATATAATAGAGACTCACCAGGGTCTGCTAC 1121 CCTCAGGCCCTCCAGGCTGGGCCTGTCTGGAGCAGGAGAACTGCTCTTTCTAAGACACTTGCCACTGTAGAGAGGAGAAC 1201 GCAGGTAGTGCCCATCCTGCCTGAGGGCATAGTGAAGGCAGGAAGACCACCACACAGAAGAAGAAGCCCGGCGGAGCTTT 1281 AGGTGGCCACAGGTACCTGCTGGCAGTGCTGTCACATTTAAGGCAAGGCTTTAAGTTACTTTGGCCAAAAATCCTAAGGA 1361 GGCAGTGAAGCGAGGCTCACGGAGTCGATGACCCGTGTCTATGGATTTACATGTAAAACATTATCTTGTAGTTTGGTTCT 1441 ATTTGAAAATCTGACAGAGAGAGAGAATAAAAAGTTTCAGGAATGTATGGAATGTGGAGATTATCTATACATCCTGGGGC 1521 CAAAAAAAAAAAAAAAAAAAAAAAAAGATGGTATATTATGGAGGAATAACAAAAGAAGTGATGAAATTTCCAGCTAATGA 1601 AAGGGGAACCACTTTTTCCCCAAGTTCAGAATTAGCATGGGGGTATTTGTGGAATTACCTTTGGGGCATTATCACACCCT 1681 GTACCATTCATCTGTATTAACGTTGGAATGTACTTCACTCAATGTTTATTGCTGTGGTTGATATTTCAAAAGCTGCTTTC 1761 AAAAAGAATCCATGCATCTCAGCATTGTTTAAATTGTATTTAGTTATGACCTCTAGAATGTTTGTTAGTCACACAAACAG 1841 AAAAAGATACTTTTTCCATTTGAGGTATTTGTCTCTTGATTCTTCAAAAGCATTTCTGAAAAGGTGGGAACAGCTTTAGA 1921 GAGATGCGAGGAACCGATGGAGCTGGGCTTGCCTGTTCCCTCCGCTGTGCTGTTGGAGCCTACCCCTCTGCCGGGACAGA 2001 CCCTGGGATTGCTTATCATGATGGATATAGCTGTTGCCCACTCGACCTTGTTTCTTCCAGGTTTACTTGTCCCTGGACGA 2081 TTCAGCATTTAACTCAAGTTACCTAGGATTTCATGCATGTTTGGTTAAACCCATGATGTTCATTCACTTAGAAATCCAGA 2161 TGGGAAGCAGAGCAAGGGGTTAGGACCTGGCTCTAGCAGCTGGGCCTTCAGAGGGTTGCTTTGTGTGGCCTGTTGGGCAT 2241 AGATGTGTCAGGACTCCTCTTATCCCCTGTCCCCCAGGCCTGCCTCCCTGTGCAGAGAGAGAGAGAACAAGGGAGAGAGC 2321 AGGAGAGCCAGAACTCCCCAGTAGGTCTCAGAGAACAGGATGATCAGAACTTTTCAAGTTATTCTAGTTTTTAAGCGAAA 2401 TATTATCCTGTGAAAGGTTTACATTCTCCACGCGATGAATATGGAATAAGAAACCCTGTGCTGCTATCCTGCCAAGATCA 2481 TTGTAATGGAGGAGTCGGTTTGCAGTACACACCAAGTGACCGGCTCCTTCAAGCTGCTTCTTGAAGTAACGATGAAGAAC 2561 ACAGACATTTATTTTAAATATAAAACCTGTTTCTCTTTTGTTTTTGTTGCTATTGTTCAAACTTGGATTTGTAGAGTATT 2641 TGAAAAAAATGTATATACATTTAAAAGAAGAAGCAGCAGCAGCTCATAGGAGTCCTTCAGGTGTGGGATTTTGTTTTCTG 2721 ATTTGAATGGCAAATTCTCCAAGTCCCTGGACCCTAGAACTGGACAGTATTGTGGCTGCATTTGCTCTAAAAGTAGTTGG 2801 TGATGCAATTTTTTTTCTTGTTAAAAACATGTTAGAAGCAAAGAGTATACATAGAATCTGACTTGACTAGCCTTTTTCTT 2881 CCTCTTTTTTTTTAATAACCTCAATTATTTTGCAATCAGACAACAGAGAGCCATCTGCATGTAGTTCATATTTCAGAAGG 2961 GCTTCACACCCAAATCTCACCTCCTCTGTAAGCTTTGAAATCTCTCCATCAATCAAAGCCAAGCAGACGTAGAAGTGGGC 3041 TGAGAGACTCAGAGAGAGCCATCGAGAAGAGCAGCCCAATGCCCTCCAGAGCCCCAGTACCCGCCCAGGCTCTCTGAGAG 3121 ATGGCAAAAAAAACAGAGAGGTTGATCTTCAGTGATTCCTCAGGGCCTGAACTTGCGTGAAGGCTTGAGATGTCCATGAG 3201 AGCCACAGTTAAGGGAGCACTTTCATGTAGTTCAAGTAAAACCCTCCATCCTGTCCAGCTCGCTTGTCTCTGGATGTTTG 3281 GGTGTGGCCTTTATTCATACATACATACATTTTTTCCACAGGCATATTCTTATTTATTACATCTAAGAGCATTGCTGGGT 3361 CTAGGAAAGGGGGAAGCAGGGTTTAGGAAGTGCTCATAAGCCAGGAGGGATTATAATAATCAGGACTGAATGTAGATAAT 3441 GGGTGGCAGTACCCACATGTGTAGGTCCCACACTGAATAGAATAGGCAGAATTGTGAATAGCCCGTGTTTGTAATGGAGC 3521 CTAGACTAAAACAACTCATAAATGTGAGCTTCAACTCTAACTGTGCTTTGAAGGTGATGGGTGTCTCTATACTTCCTTAT 3601 CAGTTACAGTTAGAAATGTACACCTACCCTATCAGGAAAAAATAACAGGAAAAGGTTGAAATATAAGCCAGTCTAAGGAA 3681 ATTAGGGAGCCACTAAAGTTCTCTTCTGAGCTTATACTATGGTCTCTATTGCAGCTCAGACAAATATGATCACACACTTT 3761 TTAAGAAATACAATTCTCCATTGTCGGGCCCATGAAGGCTCTGATCTGATCTGTATTGTTGCCCAATTTGGGTCTTTCAG 3841 GGATTTTTCTATGCCATTATTATAGGGACAAAGGACACTTGTTATGAGGTGGGAGAGATGAAGAATTCTTACATGAGTAG 3921 AACATTTCCTAGATTGGGCCAGGGTGTGAAGGTCTTCAGCAAAATCAAGGCTGTGAGAAGTGAGGGACCTTTATGGGGGT 4001 CAAAGTTATGTTCGCCTGAGGACTTTTTGCAAGAAGCAAGGAAGCTCTATGGTACATTTATACTCCAGGGACATTGACCT 4081 AGTTCAAAGTCTGGCTTAATATGGTCAAGCAATAGCATATGTTTCAAGTTGGATATGGCTAATGAGTGTTTAAACAGTAA 4161 GTTTGACATTTTAACCAACAGGGTATTTAAACAACAACTTTCCAGTTGGTAGGGACATCTGTTTCTCTCTGTTTATTATA 4241 CACAACATAGAAAAAATTCAATAAGATTGAATTAAGTAAAACATTGTGAGACTGAGTTAGGTAAACGATTGTGGCAGTCC 4321 CTTAGCCTTGGCCAGGGAATTATTCAATCCGCTATAGACATCTGTGCACTGTGCATCTCTCCAGGCATGAAGAAAACCAG 4401 GTAGAGGGCAGATGGCACCTGAGCACTTCATCCTGGATATCTAAGAAGAATAACATAAAGCCAGTGTTCCATGCACCAAG 4481 TCCAGTACAGAAGACAAAAAGAGTCACAGAAGATGGAAAAGCTAGCTAATCAGAAATCCTGGGAATGTTAAGTGTGCCGG 4561 CCATGTGGCTATGCGGCAATGCCTGTACCTTCCCACTTGGGAACCTGCAGTGGGCCCTCCAGCTGGCTCCCTTCATGAAA 4641 TCCTCCCCTCCGAGATAACATCTGAAGGATTGATGGCAGATTCAGTTTCCATTAGGAGATATTTTCCTTTGGAGACAGGG 4721 GTTCTCTATTAAAATATCTTCTTAGGTTTTCAGCTAAACTTTGCTTTGGCTTCAGCTATAGTGGGGTTCTTTCTAAGTAA 4801 AGTAATGTTCAAATAAGTGTTTTGTATTGGAAGCTTTGTTATCAAGATTTTCATACTTATATCCATGGGCTGCTTTTAAG 4881 GTTGATACTTTTAGGCGTGGCTGATGCCTATAGCACTGTACATACAAGAAATATATAAGTGTATTTGGCATACTTAAGGT 4961 AAAATAAGTCTCCAGTTGGCTACTGTTACATATAATGGCTCTTTGTTTGTGTTGTTAGAAAACATTACATTGCCATTAAC 5041 TCCCCATGTCTGTCTGAAAAAATAAAATAAAATACAGTGAGCAGCACC Target sites
Provided by authors
Predicted by miRanda
DRVs
SNPs
DRVs & SNPs
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miRNA-target interactions (Predicted by miRanda) |
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Experimental Support 1 for Functional miRNA-Target Interaction | |
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miRNA:Target | ---- |
Validation Method |
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Conditions | LNCaP , RWPE-1 , K562 |
Location of target site | 3'UTR |
Tools used in this research | miRanda , TargetScan , PicTar |
Original Description (Extracted from the article) |
...
"Both miRNAs are able to target BCL2
... - Bonci D; Coppola V; Musumeci M; Addario A; et al., 2008, Nature medicine. |
Article |
- Bonci D; Coppola V; Musumeci M; Addario A; et al. - Nature medicine, 2008
MicroRNAs (miRNAs) are noncoding small RNAs that repress protein translation by targeting specific messenger RNAs. miR-15a and miR-16-1 act as putative tumor suppressors by targeting the oncogene BCL2. These miRNAs form a cluster at the chromosomal region 13q14, which is frequently deleted in cancer. Here, we report that the miR-15a and miR-16-1 cluster targets CCND1 (encoding cyclin D1) and WNT3A, which promotes several tumorigenic features such as survival, proliferation and invasion. In cancer cells of advanced prostate tumors, the miR-15a and miR-16 level is significantly decreased, whereas the expression of BCL2, CCND1 and WNT3A is inversely upregulated. Delivery of antagomirs specific for miR-15a and miR-16 to normal mouse prostate results in marked hyperplasia, and knockdown of miR-15a and miR-16 promotes survival, proliferation and invasiveness of untransformed prostate cells, which become tumorigenic in immunodeficient NOD-SCID mice. Conversely, reconstitution of miR-15a and miR-16-1 expression results in growth arrest, apoptosis and marked regression of prostate tumor xenografts. Altogether, we propose that miR-15a and miR-16 act as tumor suppressor genes in prostate cancer through the control of cell survival, proliferation and invasion. These findings have therapeutic implications and may be exploited for future treatment of prostate cancer.
LinkOut: [PMID: 18931683]
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51 mmu-miR-16-5p Target Genes:
Functional analysis:
ID | Target | Description | Validation methods | |||||||||
Strong evidence | Less strong evidence | |||||||||||
MIRT001064 | Wnt3a | wingless-type MMTV integration site family, member 3A | 4 | 1 | ||||||||
MIRT001065 | Ccnd1 | cyclin D1 | 4 | 2 | ||||||||
MIRT001066 | Bcl2 | B cell leukemia/lymphoma 2 | 4 | 2 | ||||||||
MIRT001689 | Ccnt2 | cyclin T2 | 1 | 1 | ||||||||
MIRT003375 | Arl2 | ADP-ribosylation factor-like 2 | 4 | 1 | ||||||||
MIRT004105 | Cadm1 | cell adhesion molecule 1 | 2 | 1 | ||||||||
MIRT005352 | App | amyloid beta (A4) precursor protein | 4 | 1 | ||||||||
MIRT005922 | Mdm4 | transformed mouse 3T3 cell double minute 4 | 3 | 1 | ||||||||
MIRT005923 | Vegfa | vascular endothelial growth factor A | 4 | 3 | ||||||||
MIRT005924 | Jun | jun proto-oncogene | 3 | 1 | ||||||||
MIRT005925 | Jag1 | jagged 1 | 3 | 1 | ||||||||
MIRT006566 | Slc6a4 | solute carrier family 6 (neurotransmitter transporter, serotonin), member 4 | 1 | 1 | ||||||||
MIRT006940 | Ccne1 | cyclin E1 | 3 | 2 | ||||||||
MIRT427938 | Ppap2b | phospholipid phosphatase 3 | 3 | 1 | ||||||||
MIRT438298 | Bcl2l2 | BCL2-like 2 | 1 | 1 | ||||||||
MIRT438763 | Cd40 | CD40 antigen | 3 | 1 | ||||||||
MIRT438766 | Fgf2 | fibroblast growth factor 2 | 3 | 1 | ||||||||
MIRT577813 | Rnf168 | ring finger protein 168 | 1 | 1 | ||||||||
MIRT578440 | Irgq | immunity-related GTPase family, Q | 1 | 5 | ||||||||
MIRT578972 | Dhdh | dihydrodiol dehydrogenase (dimeric) | 1 | 2 | ||||||||
MIRT583721 | Erlin2 | ER lipid raft associated 2 | 1 | 1 | ||||||||
MIRT584146 | Creb5 | cAMP responsive element binding protein 5 | 1 | 1 | ||||||||
MIRT591285 | Klc1 | kinesin light chain 1 | 1 | 2 | ||||||||
MIRT591939 | Ddx19b | DEAD (Asp-Glu-Ala-Asp) box polypeptide 19b | 1 | 1 | ||||||||
MIRT592081 | Sorcs2 | sortilin-related VPS10 domain containing receptor 2 | 1 | 1 | ||||||||
MIRT592201 | Mapkap1 | mitogen-activated protein kinase associated protein 1 | 1 | 2 | ||||||||
MIRT592347 | Armcx6 | armadillo repeat containing, X-linked 6 | 1 | 2 | ||||||||
MIRT592355 | Angel1 | angel homolog 1 | 1 | 1 | ||||||||
MIRT592370 | 4930444A02Rik | protein-O-mannose kinase | 1 | 1 | ||||||||
MIRT592407 | Tacc1 | transforming, acidic coiled-coil containing protein 1 | 1 | 2 | ||||||||
MIRT592431 | Spsb4 | splA/ryanodine receptor domain and SOCS box containing 4 | 1 | 1 | ||||||||
MIRT592665 | Itgav | integrin alpha V | 1 | 1 | ||||||||
MIRT592716 | Fbxo21 | F-box protein 21 | 1 | 2 | ||||||||
MIRT592808 | Bicd1 | bicaudal D homolog 1 (Drosophila) | 1 | 3 | ||||||||
MIRT597924 | Pacsin2 | protein kinase C and casein kinase substrate in neurons 2 | 1 | 1 | ||||||||
MIRT598104 | Ncl | nucleolin | 1 | 1 | ||||||||
MIRT598638 | Idua | iduronidase, alpha-L- | 1 | 1 | ||||||||
MIRT599012 | Fgd4 | FYVE, RhoGEF and PH domain containing 4 | 1 | 1 | ||||||||
MIRT600261 | Trim2 | tripartite motif-containing 2 | 1 | 1 | ||||||||
MIRT600294 | Tifab | TRAF-interacting protein with forkhead-associated domain, family member B | 1 | 1 | ||||||||
MIRT601126 | Bri3bp | Bri3 binding protein | 1 | 1 | ||||||||
MIRT601137 | Bcl11b | B cell leukemia/lymphoma 11B | 1 | 1 | ||||||||
MIRT603793 | Lpcat2b | lysophosphatidylcholine acyltransferase 2B | 1 | 1 | ||||||||
MIRT733369 | Synrg | synergin, gamma | 1 | 0 | ||||||||
MIRT733370 | Tnrc6b | trinucleotide repeat containing 6b | 1 | 0 | ||||||||
MIRT733372 | Lamtor3 | late endosomal/lysosomal adaptor, MAPK and MTOR activator 3 | 1 | 0 | ||||||||
MIRT733373 | Hip1 | huntingtin interacting protein 1 | 1 | 0 | ||||||||
MIRT733374 | Il6ra | interleukin 6 receptor, alpha | 1 | 0 | ||||||||
MIRT735570 | CXCL10 | C-X-C motif chemokine ligand 10 | 3 | 0 | ||||||||
MIRT736046 | Il7r | interleukin 7 receptor | 2 | 0 | ||||||||
MIRT756040 | Rbfox2 | RNA binding protein, fox-1 homolog (C. elegans) 2 | 3 | 1 |
miRNA-Drug Associations | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
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miRNA-Drug Resistance Associations | ||||||||||||||||||||||||||||||||||||||||
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