miRTarBase - #MIRT003174


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pre-miRNA Information
pre-miRNA hsa-mir-210   
Genomic Coordinates chr11: 568089 - 568198
Synonyms MIRN210, mir-210, MIR210
Description Homo sapiens miR-210 stem-loop
Comment This human miRNA was predicted by computational methods using conservation with mouse and Fugu rubripes sequences .
RNA Secondary Structure
Associated Diseases

Mature miRNA Information
Mature miRNA hsa-miR-210-3p
Sequence 66| CUGUGCGUGUGACAGCGGCUGA |87
Evidence Experimental
Experiments Cloned
Editing Events in miRNAs
Modification Type Position on miR Chromosome DNA Strand Genomic Position (hg38) List of PMIDs Variant details
A-to-I 12 11 - 568122 25582055 MiREDiBase
A-to-I 14 11 - 568120 26028588 MiREDiBase
C-to-U 1 11 - 568133 26209130 MiREDiBase
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs753825152 1 dbSNP
rs759616365 3 dbSNP
rs1247955373 6 dbSNP
rs558661304 9 dbSNP
rs1490451308 13 dbSNP
rs1344162213 14 dbSNP
rs745930382 15 dbSNP
rs1220183952 16 dbSNP
rs1355496181 17 dbSNP
rs1280245998 19 dbSNP
rs781628850 20 dbSNP
rs1241231800 22 dbSNP
Putative Targets

miRNA Expression profile
Human miRNA Tissue Atlas
miRNAs in Extracellular Vesicles
Circulating MicroRNA Expression Profiling
Biomarker Information
Biomarker ID Name Type Discovered From Mode Level Source Testing Methods
BX0CY6 miR-210 Predictive Biomarker (PRD); Safety Biomarker (SAF) Clinical/Experimental Data Expression Increase Urine Quantitative real-time reverse transcription PCR
BX0CY6 miR-210 Predictive Biomarker (PRD); Safety Biomarker (SAF) Clinical/Experimental Data Expression Low Blood Reverse transcription-polymerase chain reaction
Gene Information
Gene Symbol PTAR1   
Synonyms -
Description protein prenyltransferase alpha subunit repeat containing 1
Transcript NM_001099666   
Expression
Putative miRNA Targets on PTAR1
3'UTR of PTAR1
(miRNA target sites are highlighted)		 
>PTAR1|NM_001099666|3'UTR
   1 AAGAGGTGAATTAGTCCTACAAGGTTCCCCTTTTAGTGCAATATTGCTTTCTTTTATTATTTACATAGTTGCATGAACTG
  81 TTTACTATTATTGGCTAACCATATGTTCTTCGTCTTTAGGTTGAAAGTCCATAGTAAATCTTTCATTTTATTTATTTTGT
 161 TAATAACTGGCATTCCTGTGGGGATAAAATAATCGTATAGTTCCTTCCTGCTGAACAGCGAGTCTTAAATTTTCTGTTTA
 241 ACTTCTCACCCTTTGTATTTCTATATGTGGGGCTTCTCATTTGGTTTTCCTGATTGGTTCACACACACACACCTCTACCC
 321 CCCTCAGTCCAATTGCTGCATAGGCAAATTCTTTTAAAAATTAAAAATTTAAGGCCTAGGCAGGAGGATTGCCTGAGCCC
 401 AGGACTTTGAGACCAACCTGGGCCACATAGCAAGACCCGATTTCTACAAAAAGTAAAACAAAATAGCTAGGCATGGTGCT
 481 ATGCAACTGTGTTCCTAGCTATGCAGGAAGCTGAGGCAGAAGGATTGCTTGAGCCCCAGGTGTTTGTGGCTGTAGTGAGC
 561 CATGATTGCACCACTGTACTCAGCCTGGGCAATAGAGTTGAGACCCTGTCTCTAAAACAAATTGAAAATAAACATTTATG
 641 TTGCAGTTCAACTGAAGAATGTTGGTATGAATGCCGAATAACTTGATGTAATTGTTTTGAGAATCAAATGGCTAGATGGG
 721 CGAATGTTTAAAAATGTAAACTAGTTCTCTTTCTCTAGCATGTTCTACCCAATTACCAAAGTCAGAAGTATTGGAATTTA
 801 TATGAAAAAAATGCTTCCAATGTAATCCATTTTTTAAATGGTTATTTAAGAAAAAACTAACTTAAGAGTTTATGTAATTG
 881 CAGTAAAGGAAAATTATTTTTATTGCTAGTTTTGATAGATTATTTTTACCTCAAATTTGGTATATGCCAAAACACATCAG
 961 TCCTTATAAAATTGATTTTTTTTTCCTGAAAACCTGGAATGCCATTTTTAGCTATTACTACTTTTTAATTTCAAATTCAC
1041 TTATGACAAATGGGAGAAATATATAAAGAAATAGATCCATAAAAATATTCCTTTTTAAAAATCTAAATTATTGAGGATAC
1121 ACTATGGAAACTATAAAATTATCATGAAGTGACTGTTAAAGTTTACTGGCAAATGCCAAGGGAAGGAATAGTATGTGCAA
1201 AACAAAACACTTTGATACTGAACTTAATCAGGGATGAGGTACCAAAGTATCCACATTATAGCCGTATCTTATGTTTCCAA
1281 TAACAAGGGCTGAGTTTTTCAGGTAGGTGGGATGAGGGTGGGGAATGGGCCATGTAATGTCTGCTTTCTTATATTTGCCC
1361 TTTTGTAAGTGGTCTGTTTCTTCTTTTCATATACTTTGTTTTGCCAATCCATTACGTATTTTTTGTCACTTTTGTGTGTC
1441 ATTTTTGTATACCTTTCCTTTCTTACTTCAGGGGTGTGTCTTCAAGATTTCTACCCCCTATTTGCAATGAATTTCATACC
1521 TCATCTAAAATACATTCATATACCAGAAATATGAAGAGTGGCCCTTCTAAAAGTTTCCCTAATGATGGAAGCTGTCAGTT
1601 GTCCTATCTGTGCAGAATGTGAGTAATAGTGGCAGAAATAAGTGTGACAACAATGCTTTGCCTGTTGTTCTTTTTACTTG
1681 CTAGGTAATTTGTAAAGTGGGGATAAAGATGTAGGGAAAGTAAACCTCTCTCTCACTGTTACGGAAAGCCTGGACTTGAG
1761 TTAGGTAGACTGCCTTAAAGAAGAAGAAATATGTCCTTTTCTTTGGCATCATGGTTTTGTTGAGTGGCAGACTGTTGAAG
1841 TGAGTTGAGACTTAAGAACGCCAGAAAAGTTGTCTAGCCTGGCCCCAGTAGACAGAATTTGTTCTTCTCTCAAGTAAAAA
1921 ATTACCTTTTTATAGCTTTTATATTATTTAGATGAAAAAATACCATTATGAACATAATTCCATGGCCCTTTGTGTACAAA
2001 GCATATTTTGAATTAAATACCTCAAGGTCCACCTAGACCTCTATGGATAAAATCATAAGTTTATGATTTTTAGCTCCTGT
2081 GAGTGTTTGGGGGCAAACTACACAGAGAAGACATGGGTGGTTCAGCCCATTCCACTAAAATATGTTGCCAGATTCTGGCC
2161 TAACTCAGTATTACCTTTTTTCCTAAAAATCATTTTTCACATTTTGAGTAATAGGGCTTATGCTTTGATGTGAAAAAATG
2241 TCAGGAAATGAGTGTAGACAATACCCTATAAAACACTAGCTAAGTTTTATAGTGCTCCATGCCTTTGTGTACCTTCCACT
2321 GATTATCTTGCCTATCTTTGGTGTGTAAACTATTTTCATATCTTCTAAGGCTCTTAACCCACTCTTTTCTGAAGCCGCAC
2401 AGTCCTTTAATATGTCTTGTTTCCTTCCTAAAAGTTTAAAGTAGAGAGCAAAAATGCAAATACCCAAAGGATACTGTTAG
2481 TATGTAACTTTTGTGTGCTGCTTTATTTCTAGAGTTTGCATTTTTTAATTGTTCATTCACAGAAAATCCTAATATTGCCC
2561 TATATGGTTGGTTTTTTTCCTAAGTGGTTAATATTTAAACCCGCTAGCTGTAGCATGATAATGTCTTTGACTGAGCTTAT
2641 GTAGTAGAAAGGATGTGTCTGTTTTCTGGGACTTTTAGTCTTCACTTATTTTTCTATAACAATCTAATTGTTAAAAGGAA
2721 AAGATGGCTTATTGACACATATTTCATTAAACTTTCACTGGAAGAACAGTGGGTCATCCTACTGTGGATTAAGAATACTA
2801 CTGACAAGCAAAAAGCATTAAGCTCTGTAACTGTCTCCAACACCACCTTCACCCCGCCTTTAGTGTACCTTAGTGTACTT
2881 TAGTGTACCTATTTTGGCAGTACGGTGTTTTCCAGATTCTACTTGTGCCCTGCACATTGTGAGGACTCATTAAATATTTA
2961 TTAAATTAATGAATGACTAACAGGAAGAGAAAGATTGTTTGTGAGTGTTAAGAATGAGTGATGATTGAGAAATTGATGGA
3041 TTAGTGCAATGGATTGGGAATGAATGATGCTTTCTAGTTTCGTAATACTTGGGAAGAGCTATTGCATATAGAGTAAGTTG
3121 ATTTAGACTTTTTTTTTCTTCATTTCATTACCTTGTTTAAACTTGTTAAATCCCAGCCAAGAAATGCAGCTCTGTAATTG
3201 TCAATTAACTGTATTATAATATATATTAAAAATTTGTAGAGCTAAAGAACCCACTTGCATTAAGAACACCACTTTCTGTT
3281 CATTTGTGATACTAGAGGACAGATCCTGCATACAGAGCCGAAACTGCTTTTAATCATCTGAAGAAATTCTTTGATTTCAG
3361 TGACTTACTGATCTGTACCTGTGCACATATCATTTTATGCTTCTCCTTTTTTCCCCGCAACTTGAACTGTGACTCTTTCA
3441 GATATTTCTTAAATCTGTATGAGTCATTTTTTAAGCTTAGGGATTTGATATGTATTAATGTCCCCTTTGTCTTCTGTAGA
3521 TTTTAGCATTTTATTACCTCTTAAGAAACTCTGGGCCCAGACTTTCAGTCATATTTCTTATTCCTATGGTACAGTTCTCA
3601 CTTAAAGGCTTAATTATTAGTAGGGTTAAATATATACAGGTTATCTCTAAAAGTACTTAAATTTTTAAATAAGGGCTTAT
3681 GTGATACAAGATACGGAAACAAAAGTTTTTGGATTTTTATGCAGTAGTTTGCAGGAAAGCAAATACATAGTAGATCGTAT
3761 GCCACTTAGGTATGTTCAGGTCATGCCAGTTTATTCTTGTTGGGCCACACACACATGTATGTGTGTGTAAAAGGAATTTT
3841 TAGTATTGAAGCAAACAAATTGTCAGTTTAATAATTTTCTCTTACATAGCACAAGATGGCAGATACCACCTACTGTACAA
3921 CAATCTAATAATCCCTACCTTAGTTCCCCTGAGTTATAGAAGATGCTAAAGATTTAGTTGTAAAGGGAAGTAACATGATT
4001 TTTTTTTTCTAAAAAGCTGTTTTAAGCTAACTATTATTTTGCTACTGGAAAATTATATTTTAAAACTTACAGATATTTAA
4081 AGTATGCTAGAAAATTTGAACCTGATAACAACTGAACCTTTTGTCTTGAATAAATTTCTCAAATAGAACTGTGCAAACCC
4161 TAGCACTTTATGTGTTGCTGCCTCCCCATACCTAGGTATGCTCTGTAATAAGCTCCCATTTAATGGAGAGATGTGTGGAG
4241 GCACTGAGAAGTTAATGAAGAAAAATCAACCCTAAGAATTCCTTATTGTCACATAGTGTCTTTTAAAAAATAACTGTAGA
4321 GACTGTGTTAATTCGAGTGCCTTTCTTACTTTTTTGGGAGCAAGATTATATTTAATGTTTAAGAAAACAGGATGGAAGTT
4401 TTATCAAACAGTTGATTGTGGCCCATTGTTTTATTTATTCCCATCGCTAGGCATGGCCCCGTAGGGTATTTTATCCTTCA
4481 GTGAGAGACTGATATAAGCAGGCAGGATGCTTTGATTATTCCATTAGTTATCATTTTAAGCACCCTACCAAGATTTAGTT
4561 CTTTCTTTCTGGCAACTAACGTTTTGGGGGTTGGAGGCATCCCATTTAGAGGATGGTGTGTGCACAAATAGATTAGCCTG
4641 AAACCTGCGTCCAAAGGGAAACAGTGGCACTCTGCCCTAAAATAAAGGCCAGAACGTTGTCCTAAATGAATCCTTTGCCT
4721 TACTTTAGGACCTTCCTTCCCTCTCAAATTCAGGCATAATGTAATATAGTTGAAAGGGGGAAAACAGTACTTGCTTTCTC
4801 TCAGGTATTGGAGGAAAAGAAGTAAATGCGTAGATGAAATTTTAAATGTATCATTTTATCTGTTTGTATATGGAGAAGGG
4881 AGGGATAGGAATTCCATATTTCAAGATAGCAAATATAATTTCATAGAAATATATAGCTAAAGATTCCAAAGTGCTTTTAC
4961 AGAGAACTGTTGAATAATATATTCCTAAAGGGCAGCAATATGCCATGTTCATGGTGAAGACAGAAAACCAATGAATCAGT
5041 TGTGGATCTCAGGTGGGAGAGGAAACCTCAGGCTCCCAACTTTGACTTCTCTACTCTCACCAGGCCATGTTAACACTGTA
5121 AAACCAAACTCTTTGCTAAGAACAATACAGGGCAGTAGTTTAGTCTGCTGATGAAACCTTGTGCTTCCAAGAATATTAGC
5201 TATATATAATTTGTGCTTTCTGGATGATTCTATTGTCCAGAAAGCTAACCCTGACGTTACTTTTATTAGTCTGTTGTTAT
5281 TCCTCAGGGTGTAGAAGATTTAGTAAATTCAGGACAAATTTTATATTCAGTGGCAAAAAGAAAAGGCAAAAATATGCTAA
5361 ATATATTATTAGCTCTTAAATTTTAGTATAGATCGTATTTTTTATAAACTATTACCAGTACAGTAGCTAGTAGATATTCT
5441 GTGACTGCCTCATTGTTTATCTTGCTGCTTTGGTCCCTATGGCTCTAGTATGAACATTCTCGTGTCTTCTGTGGAAATGA
5521 TTTCTGTGTTATAGTTCCATCTTTGGTAGAGGTGGGGATGATTGTATTTTGTTTTAGTTGACATCATTCTCAACTTTTAG
5601 AAATACTGTTGAGGAAAATGATTACCGTTGGTTTTCAAATTGACAACTATTTTGCTTCCAAAGACTTCAGTTTCCCTTTG
5681 TTTTATGTGTAGACCTCATATATGTTCAACACATTGCATACTGCCTTGCACATTGTAGGAATTCAACAAGTCAAGAGTTG
5761 ATAAAAGCTAGAAAGATAAAACTAGCTTAGCTATCATATCATCATTGTCCATATTCTTAGCTTTGGGAAAAATATACCAT
5841 TTTGCATAAAATACATAATCAGTTTCAAATGCATAAGGCAAAGATATACAGTTGCACAACATTGCAAGTGAAATTTACAA
5921 AGGATTTTTATTTTTGTGTATGCTAAAAGTGCTCCTACTTAAAGCAGTTTTCTTTATTAGACCAACACCTTCCAGCAAAG
6001 TTAGAAACCAAACACAAGTGCTCATTTGCCCAAATTAACCAGATAGTTATGTAAACTGTTCATATTAAGTCTTTAGTGGT
6081 TTACAAACAATAACATTCTGGCTTTTCTTCCATACCTTTTAGGAATCAGCCTTAATTTTAAGTATAGCAGTCACTTTCCT
6161 CAAGGTACTATGCAGCATACTTTAGATTGCTTATTTATCATTATAAGGTGATAGGTAATAAATTTGAGGTTTACTTGTCA
6241 TATAATTTCATATGGCAGATATTGATTCAAGGAGCATTCTATTAGAAAAAGTTGATAAATTATCCTCCCTTACAAATATC
6321 ATCTTGCATTTGGAGCAGGTATTTTTTTCTTATTAGTTAAAGACTGGGTACAGTTATAGTAGATGCTCAATAAATGCTTA
6401 GTCAGTGATTGATCTAACATCAAACTAACAGCTTTCAGAAAGGAGACTGTTGACATCTTTTCACCAAGGAGTATATTTGT
6481 AGAGTAATATATGTGTGGAATTTTGAAATTATATCATTTGACATGATTTATGAGGCTTATTTAAGCTGGAGTTAGTAACG
6561 TAATAGAAGTATTATTTATACAGAACATAGTTGAAAGATAGGAGATGTGAAAGATTAAGTAGTATTTTCTTGTGCAAGGC
6641 ATATTAATAAATGTAATTAAATGTCTTAATAAGCAGCTGGCTGAACTCTAGAGAGAACTGCTGTAGTCTTCTGCAATCAG
6721 TCTCTGTATTGGTATATCCAGTACTATCGGGTTTAGGTTCTTTTTATTTTTCCTTAAATCTTACTTGTTTCTAGCGTCTT
6801 AAGAGTGGTAATGGTAAAATGTGAAGTTACAATAAACTTCTGCTTGTTTTCTCAGAACATCTTTGGCATGAGGAAGAACT
6881 TTTTGTGAATGATACAGTAGTCTCAGCATCTGTTAATTTGTGGTTTTCAAAGCATTTTTGACAGAGTTTACCTAATGTAA
6961 AAAGATTAAACAGTTTTATAAAACACAAATAAACATTCCTACCTGAACTGTGAGGAACAGAGTGTATAGTACAAATGTAA
7041 TTAGGCATTGCCTCCTGGCGAGGTTCTTGATGCATGACTTCGATGCTGGCTGCTGACTGAGGTGACCACTGTCAGTATTG
7121 TACTTTGGCATATGTTGTTTTTAGGAAAATAATGGAATGCATTCTTAGATTAACTTACTGTTTTTGAGTTGGAAAAAATA
7201 AAAGATGAGGTATTATAAGTATGCCAAATATTTATACACTACAAAAGATTAAAAAAGGAGAGGGAGAAAAAAAAAGGCCA
7281 GTTATGATTTTAATAGCGTCTAATTTTTTTTTGACTCGAATTTTGTGGACACTAGTCAATTGCATAATTTAACATGGAGG
7361 AGCTTTCATTTAAAAGAAGTTCTCAGCTACTATATTCTGCCATTAAAATTAACCATGCCTGTTAATTTTACATTGCTTGA
7441 AGATATAAGTAAGCTGCCGTCAATATTGTTTTAAGATTTTCTTATAGTTTATGTTTAAATGGAAAAGTTACATATATAAT
7521 CTATGGTGCAGGGTCAGGCATTGGCCATTAAAGATAAGTTTGGCTAACTATTTTACTGAAGAGACTAATGGTCTTCCCTC
7601 TGTTGTACTGCTATGTTTCTTGATCTGTTTTTCCCCAATGTAACAGTCTACATTGAAGTCCTTTAGCTCTCTCCATATAC
7681 TAATTGACATTTGTTAAGGATTCAATATTTTGTGAATTCTTTTTACCCTTAAAATGCATATCTTTCAGAGAGATAAGAAT
7761 GAATTTTGCAATAATTTATATGCAGAGTGTGCTTATGGGTTTCTGGGAGTTCAAGTTAGTACCCCAGAGTGCTTAAAAGT
7841 ATGATGCTAAATTCTAAGGCTAATGTAATGACTGTAGATTATCTATGTCCACATTGTTCAACAGAAATATAATGTGAACC
7921 ACAACATAATTTTTAATTTTCTAGTAGCCATATTAAAAAAGAAACAAGCAAAATTAATTTTAATAACAGTTTATGTAACC
8001 CAGTATATTAAAAATATCATTTCAACATGTAATCAATATAAAAGATTATTAATGAAACACCTTATCTTCTTTTTCTTCCA
8081 TACTAAGTCTTAGATTTGAGTGTATTTTGCACTCACAGCACATCTCAATTCTGACTGGCCACATTTTAAGTGCTCAGTAG
8161 TCACATATGGCTAAGGGCTACTATACTGGACAGTACAGATTCATAGAGTATAAAATATGACTTTAACTTTGGAGATGGTG
8241 AGGTAGGCCTGTAATTATGGTACTTTAAAAATTCAGAATATTTAGAAAAGCATCTAATAGAATTATCCACTTGTTTTCCT
8321 TCATCTTCATTTTAATATGTTCTAGAAGTAGGATCAGCCTGTTCCAATTTGCCAAGCATTATTAAGGAGGAATAATTCCA
8401 TACCATGTAAAATACCATGATATGCTGATTATACTACATTAACAAATTTTTAAGTTGCGTTCACTAAATTCTGTCCTGTT
8481 TCTTCAAAATAATATAGCTTAAATTGCATGTTAATTGTATATCTTACCTATTTTGTTTTTATATTATTCTTACAATATAA
8561 TCATGTATATTAACAAACAGCCCTGGGATTCTAATCTTCCTCTGCAACTGTCTTCCAGGACTTACTGGCACTTATTACAC
8641 TGTGATAAGTGGCAGAAAAGTAGAATGAAATATTCTTTTTCCATTAGATTTGTTCTTATGTGACCATGTACCAAGCCAGC
8721 TATAAAGTATTGTATTTCTGTAGAATATGGAAAATAGTATTTGTCTTACCTTTGCTAAATGTTTGCAATTTCTAAGTAAA
8801 CCTTTTATCTCCTAAAATGAAAAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1 
miRNA  3' agucGGC-GAC--AGUGUGCGUGUc 5'
              |:| :||  |||||| |||| 
Target 5' tttcCTGATTGGTTCACACACACAc 3'
 286 - 310 132.00 -14.20
2 
miRNA  3' agucGGCGA--CAGUGUGCGUGUc 5'
              ::|:|  | ||||| |||| 
Target 5' attcTTGTTGGGCCACACACACAt 3'
 3793 - 3816 128.00 -15.30
3 
miRNA  3' agUCGGCGACAGUGUGCGUGUc 5'
            | | |:| ||| |:|||:| 
Target 5' taATCAGTT-TCAAATGCATAa 3'
 5856 - 5876 127.00 -11.10
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN30459714 29 COSMIC
COSN31557884 51 COSMIC
COSN31581460 63 COSMIC
COSN31486419 111 COSMIC
COSN31524501 112 COSMIC
COSN5704355 113 COSMIC
COSN5122778 197 COSMIC
COSN28198293 269 COSMIC
COSN5704354 292 COSMIC
COSN2325562 362 COSMIC
COSN2325561 545 COSMIC
COSN17038104 561 COSMIC
COSN16192000 565 COSMIC
COSN21313387 702 COSMIC
COSN29156294 754 COSMIC
COSN15841879 1230 COSMIC
COSN22770923 1403 COSMIC
COSN9284550 1591 COSMIC
COSN9284549 1592 COSMIC
COSN16476859 2074 COSMIC
COSN29815929 2090 COSMIC
COSN22072504 2112 COSMIC
COSN5122777 2139 COSMIC
COSN20864144 2233 COSMIC
COSN21104320 2280 COSMIC
COSN2468485 2628 COSMIC
COSN1380580 2900 COSMIC
COSN29538846 2923 COSMIC
COSN2325560 2965 COSMIC
COSN16979558 3161 COSMIC
COSN1380579 3278 COSMIC
COSN20106231 3998 COSMIC
COSN19564773 4213 COSMIC
COSN6392593 4290 COSMIC
COSN26302612 4324 COSMIC
COSN20889349 4487 COSMIC
COSN1380578 4878 COSMIC
COSN28315230 5334 COSMIC
COSN6604268 5394 COSMIC
COSN7570332 5836 COSMIC
COSN16298610 6455 COSMIC
COSN32056110 6796 COSMIC
COSN24838509 6950 COSMIC
COSN5814668 7078 COSMIC
COSN29511812 7271 COSMIC
COSN6392592 8235 COSMIC
COSN21095826 8240 COSMIC
COSN30411626 8685 COSMIC
COSN20460827 8695 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs1225376992 6 dbSNP
rs1437177498 8 dbSNP
rs528027809 10 dbSNP
rs1270946071 12 dbSNP
rs369183242 16 dbSNP
rs1398400655 19 dbSNP
rs1409721050 21 dbSNP
rs755388721 22 dbSNP
rs377370044 23 dbSNP
rs780613226 24 dbSNP
rs758892052 28 dbSNP
rs1489946093 33 dbSNP
rs551569816 34 dbSNP
rs750542817 35 dbSNP
rs765449636 36 dbSNP
rs1267689556 38 dbSNP
rs1480488882 41 dbSNP
rs1315136588 42 dbSNP
rs1270088424 48 dbSNP
rs373218381 49 dbSNP
rs1416731348 62 dbSNP
rs1003932779 71 dbSNP
rs886563025 73 dbSNP
rs1412040728 75 dbSNP
rs1356074647 83 dbSNP
rs370501653 85 dbSNP
rs879610394 87 dbSNP
rs926853811 88 dbSNP
rs1406961104 89 dbSNP
rs1268561773 91 dbSNP
rs982330570 92 dbSNP
rs1435893633 99 dbSNP
rs781695268 104 dbSNP
rs879045909 111 dbSNP
rs930819713 112 dbSNP
rs1275647156 113 dbSNP
rs779805325 131 dbSNP
rs758391524 132 dbSNP
rs943603721 134 dbSNP
rs1408217664 160 dbSNP
rs1490422183 170 dbSNP
rs1200540731 175 dbSNP
rs189191748 178 dbSNP
rs1187042237 180 dbSNP
rs1391905187 184 dbSNP
rs1162740582 194 dbSNP
rs958037293 195 dbSNP
rs1032263767 199 dbSNP
rs996796227 202 dbSNP
rs1325939702 207 dbSNP
rs1431526537 209 dbSNP
rs184622934 213 dbSNP
rs750118293 215 dbSNP
rs543182055 219 dbSNP
rs986507209 220 dbSNP
rs1211277388 227 dbSNP
rs1019933112 228 dbSNP
rs766062207 228 dbSNP
rs1211424479 239 dbSNP
rs1486618600 247 dbSNP
rs576078345 254 dbSNP
rs778778459 257 dbSNP
rs1182899589 269 dbSNP
rs1385651157 284 dbSNP
rs1473620010 298 dbSNP
rs558538738 300 dbSNP
rs1311729502 302 dbSNP
rs977803415 305 dbSNP
rs1025401352 307 dbSNP
rs967877655 311 dbSNP
rs145607931 312 dbSNP
rs1055502149 313 dbSNP
rs1348948140 313 dbSNP
rs1452627073 313 dbSNP
rs991159937 317 dbSNP
rs905467469 319 dbSNP
rs1223987682 320 dbSNP
rs112575324 321 dbSNP
rs41282405 322 dbSNP
rs1179452250 327 dbSNP
rs988244325 330 dbSNP
rs1470675425 335 dbSNP
rs554072661 338 dbSNP
rs538856189 339 dbSNP
rs925359649 348 dbSNP
rs151150845 350 dbSNP
rs1337997917 351 dbSNP
rs73461071 356 dbSNP
rs1019540907 361 dbSNP
rs537997825 370 dbSNP
rs1336711427 371 dbSNP
rs1442501383 377 dbSNP
rs1289758200 382 dbSNP
rs1320838477 383 dbSNP
rs1026357477 392 dbSNP
rs987088121 395 dbSNP
rs1345326176 398 dbSNP
rs951249453 402 dbSNP
rs994857363 408 dbSNP
rs1471407344 410 dbSNP
rs142073515 417 dbSNP
rs1184621611 418 dbSNP
rs780410487 425 dbSNP
rs899341984 427 dbSNP
rs1480164176 437 dbSNP
rs1039232007 438 dbSNP
rs1429514255 439 dbSNP
rs73461069 449 dbSNP
rs1460968201 466 dbSNP
rs1181269886 469 dbSNP
rs1034081395 480 dbSNP
rs1001220050 482 dbSNP
rs890753405 484 dbSNP
rs1052440023 486 dbSNP
rs1343303217 493 dbSNP
rs1403914915 495 dbSNP
rs533893808 501 dbSNP
rs923564427 502 dbSNP
rs1332310006 505 dbSNP
rs1225173238 512 dbSNP
rs1046650304 515 dbSNP
rs1339870856 519 dbSNP
rs1210764261 528 dbSNP
rs949627437 535 dbSNP
rs1327375114 536 dbSNP
rs1490259419 538 dbSNP
rs566840177 547 dbSNP
rs1269575095 549 dbSNP
rs1426740527 568 dbSNP
rs977855820 574 dbSNP
rs1234245740 580 dbSNP
rs1374086065 581 dbSNP
rs1342682254 590 dbSNP
rs191420536 592 dbSNP
rs1396026141 593 dbSNP
rs892715250 595 dbSNP
rs1423674464 604 dbSNP
rs1361957423 605 dbSNP
rs946422128 619 dbSNP
rs936823731 620 dbSNP
rs1294801125 636 dbSNP
rs1321988375 637 dbSNP
rs35368635 638 dbSNP
rs543347220 640 dbSNP
rs914964187 651 dbSNP
rs942713699 653 dbSNP
rs1358390223 659 dbSNP
rs1324898776 667 dbSNP
rs374500274 675 dbSNP
rs569392218 676 dbSNP
rs1484945405 680 dbSNP
rs1459239914 682 dbSNP
rs1204676654 685 dbSNP
rs1262476367 686 dbSNP
rs1451947802 687 dbSNP
rs1182276879 697 dbSNP
rs1034949686 698 dbSNP
rs1366570766 704 dbSNP
rs188120236 705 dbSNP
rs1445549155 707 dbSNP
rs1165081164 708 dbSNP
rs986818683 720 dbSNP
rs577443596 721 dbSNP
rs950736923 722 dbSNP
rs763524865 724 dbSNP
rs1334531559 738 dbSNP
rs1381808362 745 dbSNP
rs1025545433 747 dbSNP
rs1463629703 753 dbSNP
rs1315393298 769 dbSNP
rs1238591772 770 dbSNP
rs879122825 776 dbSNP
rs551150758 777 dbSNP
rs749981466 786 dbSNP
rs531309489 790 dbSNP
rs899271066 791 dbSNP
rs1202335694 794 dbSNP
rs1214612175 803 dbSNP
rs1358899808 805 dbSNP
rs369416744 809 dbSNP
rs1244622895 812 dbSNP
rs1417007418 812 dbSNP
rs1007765395 820 dbSNP
rs560996320 821 dbSNP
rs148629007 838 dbSNP
rs1157841891 844 dbSNP
rs145634304 849 dbSNP
rs1299127076 863 dbSNP
rs1174211833 864 dbSNP
rs557409999 864 dbSNP
rs1363902919 866 dbSNP
rs1448627898 871 dbSNP
rs1034110747 880 dbSNP
rs1370887509 883 dbSNP
rs1391056613 893 dbSNP
rs1052024051 896 dbSNP
rs1388158755 902 dbSNP
rs1221715466 905 dbSNP
rs543825138 905 dbSNP
rs971089441 914 dbSNP
rs1313340169 916 dbSNP
rs1212854685 921 dbSNP
rs1231585116 922 dbSNP
rs1480472167 928 dbSNP
rs34238737 928 dbSNP
rs1176299428 938 dbSNP
rs934869004 939 dbSNP
rs1162459197 942 dbSNP
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rs527248289 1020 dbSNP
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rs1423040655 1077 dbSNP
rs559345783 1086 dbSNP
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rs1438642685 1093 dbSNP
rs982013939 1098 dbSNP
rs144952458 1105 dbSNP
rs929973184 1132 dbSNP
rs1340760418 1133 dbSNP
rs1303524294 1136 dbSNP
rs1357664577 1138 dbSNP
rs1219799472 1142 dbSNP
rs573431379 1146 dbSNP
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rs544349433 1169 dbSNP
rs1464441629 1172 dbSNP
rs963705572 1175 dbSNP
rs1372237043 1178 dbSNP
rs1017690900 1180 dbSNP
rs979928531 1190 dbSNP
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rs1306099798 1203 dbSNP
rs765458481 1213 dbSNP
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rs1429029834 1239 dbSNP
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rs1008021800 1243 dbSNP
rs555409243 1245 dbSNP
rs955704381 1255 dbSNP
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rs770252389 1263 dbSNP
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rs1043329104 1269 dbSNP
rs1281597793 1272 dbSNP
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rs1209282873 1304 dbSNP
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rs1186624918 1321 dbSNP
rs78284325 1323 dbSNP
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rs1038297151 1339 dbSNP
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rs1256471775 1500 dbSNP
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rs999055535 1507 dbSNP
rs897241238 1510 dbSNP
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rs967503254 1512 dbSNP
rs527363238 1513 dbSNP
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rs1200241725 1521 dbSNP
rs1379928831 1539 dbSNP
rs1168420841 1541 dbSNP
rs1371542621 1548 dbSNP
rs1012214714 1552 dbSNP
rs1238540460 1557 dbSNP
rs1190285353 1558 dbSNP
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rs1440188570 1574 dbSNP
rs183309857 1577 dbSNP
rs1055223992 1596 dbSNP
rs113989133 1597 dbSNP
rs41277935 1603 dbSNP
rs1296677720 1604 dbSNP
rs1342537600 1606 dbSNP
rs1230892978 1613 dbSNP
rs147534437 1613 dbSNP
rs929144403 1617 dbSNP
rs989051479 1619 dbSNP
rs934447003 1621 dbSNP
rs925693505 1632 dbSNP
rs1188421619 1635 dbSNP
rs1391169370 1651 dbSNP
rs897628017 1653 dbSNP
rs1170115703 1658 dbSNP
rs1366401632 1670 dbSNP
rs1457072010 1670 dbSNP
rs1293678298 1672 dbSNP
rs74453264 1678 dbSNP
rs1432832731 1680 dbSNP
rs1445740391 1684 dbSNP
rs941916921 1687 dbSNP
rs910450259 1688 dbSNP
rs1436948620 1699 dbSNP
rs1310271602 1702 dbSNP
rs1321417533 1703 dbSNP
rs1018954336 1710 dbSNP
rs986563697 1711 dbSNP
rs1267316871 1719 dbSNP
rs933298215 1721 dbSNP
rs1348543501 1726 dbSNP
rs373741696 1741 dbSNP
rs752891211 1743 dbSNP
rs564478217 1744 dbSNP
rs1249134246 1752 dbSNP
rs573751991 1756 dbSNP
rs1182177518 1763 dbSNP
rs1255901888 1764 dbSNP
rs1436040290 1765 dbSNP
rs1029869569 1773 dbSNP
rs1391070087 1780 dbSNP
rs1369703557 1784 dbSNP
rs1455151064 1786 dbSNP
rs1158366027 1787 dbSNP
rs1389352691 1789 dbSNP
rs977471616 1791 dbSNP
rs781345211 1792 dbSNP
rs1415057583 1796 dbSNP
rs967554164 1801 dbSNP
rs1315054037 1809 dbSNP
rs1348729094 1810 dbSNP
rs1165434413 1814 dbSNP
rs1268815926 1817 dbSNP
rs1331930928 1820 dbSNP
rs1208628318 1826 dbSNP
rs1255788446 1832 dbSNP
rs1472101697 1833 dbSNP
rs1483747324 1840 dbSNP
rs1182117229 1842 dbSNP
rs1021779808 1848 dbSNP
rs190000569 1857 dbSNP
rs370296151 1859 dbSNP
rs1471394328 1860 dbSNP
rs1236330137 1862 dbSNP
rs1180909604 1863 dbSNP
rs959243587 1866 dbSNP
rs374433760 1869 dbSNP
rs1002317204 1873 dbSNP
rs755227755 1877 dbSNP
rs1358391064 1880 dbSNP
rs1466313703 1882 dbSNP
rs577725997 1883 dbSNP
rs139680282 1896 dbSNP
rs1289131974 1904 dbSNP
rs897680323 1909 dbSNP
rs1291781031 1914 dbSNP
rs1217987941 1916 dbSNP
rs557733064 1918 dbSNP
rs150606948 1920 dbSNP
rs751576086 1924 dbSNP
rs941858839 1926 dbSNP
rs889063455 1932 dbSNP
rs1481901389 1933 dbSNP
rs766494096 1941 dbSNP
rs1251913254 1947 dbSNP
rs1473264154 1961 dbSNP
rs1189418746 1962 dbSNP
rs925721440 1968 dbSNP
rs187580057 1972 dbSNP
rs1433667793 1976 dbSNP
rs1248547371 1980 dbSNP
rs1178045319 1981 dbSNP
rs868395462 1982 dbSNP
rs1308797542 1986 dbSNP
rs1042757007 1987 dbSNP
rs1292994339 1993 dbSNP
rs41277933 1994 dbSNP
rs1221421480 2013 dbSNP
rs933318115 2026 dbSNP
rs775568807 2031 dbSNP
rs910177305 2035 dbSNP
rs1274847000 2044 dbSNP
rs1439168013 2049 dbSNP
rs1218788579 2052 dbSNP
rs1245618280 2059 dbSNP
rs1488801064 2072 dbSNP
rs534809652 2076 dbSNP
rs535749933 2078 dbSNP
rs765490642 2079 dbSNP
rs1403785309 2082 dbSNP
rs1164255345 2087 dbSNP
rs946139196 2092 dbSNP
rs568701747 2094 dbSNP
rs1319083276 2096 dbSNP
rs141846719 2102 dbSNP
rs1436337590 2103 dbSNP
rs1413663856 2106 dbSNP
rs1341115697 2107 dbSNP
rs1017039812 2109 dbSNP
rs961510395 2109 dbSNP
rs1005600906 2114 dbSNP
rs1450777779 2115 dbSNP
rs1246070184 2116 dbSNP
rs1464369405 2117 dbSNP
rs1189023475 2120 dbSNP
rs768679600 2126 dbSNP
rs990759214 2137 dbSNP
rs1187480024 2155 dbSNP
rs1471967405 2156 dbSNP
rs1162817722 2157 dbSNP
rs1414663581 2164 dbSNP
rs1407105200 2166 dbSNP
rs958900088 2167 dbSNP
rs533924415 2174 dbSNP
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rs1323033694 2200 dbSNP
rs1339017886 2214 dbSNP
rs1445367663 2218 dbSNP
rs895758040 2222 dbSNP
rs566528493 2223 dbSNP
rs998656937 2228 dbSNP
rs1265661502 2235 dbSNP
rs776138591 2239 dbSNP
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rs1024572060 2303 dbSNP
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rs1341790783 4417 dbSNP
rs370083680 4422 dbSNP
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rs1188738260 4445 dbSNP
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rs924164016 8157 dbSNP
rs758080780 8159 dbSNP
rs1290500837 8162 dbSNP
rs982563095 8162 dbSNP
rs41277927 8165 dbSNP
rs1353895629 8166 dbSNP
rs919345653 8168 dbSNP
rs764708531 8172 dbSNP
rs1018360202 8175 dbSNP
rs1481276884 8180 dbSNP
rs1166421875 8182 dbSNP
rs1158095864 8186 dbSNP
rs1396023675 8195 dbSNP
rs1410609543 8198 dbSNP
rs1330911920 8199 dbSNP
rs1364278277 8201 dbSNP
rs1425442506 8205 dbSNP
rs1007021386 8206 dbSNP
rs1304252308 8207 dbSNP
rs1347840003 8208 dbSNP
rs761802721 8217 dbSNP
rs1217174051 8222 dbSNP
rs1268124877 8230 dbSNP
rs1338264379 8235 dbSNP
rs1214655935 8237 dbSNP
rs955436293 8242 dbSNP
rs1387305726 8249 dbSNP
rs1162948715 8261 dbSNP
rs963556250 8262 dbSNP
rs1269485554 8263 dbSNP
rs1029698963 8266 dbSNP
rs1262894767 8273 dbSNP
rs1190751265 8275 dbSNP
rs1372735325 8278 dbSNP
rs1475836708 8279 dbSNP
rs1017807754 8285 dbSNP
rs994151976 8290 dbSNP
rs1383514266 8294 dbSNP
rs1487575879 8295 dbSNP
rs1304344883 8297 dbSNP
rs1368002390 8298 dbSNP
rs1380894619 8310 dbSNP
rs545145815 8325 dbSNP
rs1318000406 8331 dbSNP
rs1263161894 8337 dbSNP
rs986283771 8338 dbSNP
rs1271538606 8340 dbSNP
rs1356704360 8352 dbSNP
rs1244582661 8363 dbSNP
rs180968264 8373 dbSNP
rs1361060391 8376 dbSNP
rs1017235441 8377 dbSNP
rs556590869 8384 dbSNP
rs537929943 8389 dbSNP
rs753754379 8390 dbSNP
rs954973975 8391 dbSNP
rs1030580514 8397 dbSNP
rs1447334451 8400 dbSNP
rs1243628720 8405 dbSNP
rs1241518911 8410 dbSNP
rs762917274 8416 dbSNP
rs1444161950 8423 dbSNP
rs763926724 8424 dbSNP
rs1387642276 8432 dbSNP
rs10867936 8434 dbSNP
rs558961737 8438 dbSNP
rs1339735210 8443 dbSNP
rs1386178606 8443 dbSNP
rs1010636456 8445 dbSNP
rs1411506609 8453 dbSNP
rs1322200292 8454 dbSNP
rs1380118237 8457 dbSNP
rs949831347 8458 dbSNP
rs555335760 8459 dbSNP
rs1291949901 8486 dbSNP
rs1342227647 8489 dbSNP
rs1054917940 8491 dbSNP
rs775454897 8495 dbSNP
rs1052735143 8506 dbSNP
rs934289841 8507 dbSNP
rs534270815 8511 dbSNP
rs1001992758 8519 dbSNP
rs1477078651 8543 dbSNP
rs1344624813 8546 dbSNP
rs906447551 8553 dbSNP
rs1200789363 8560 dbSNP
rs1046278612 8564 dbSNP
rs929312741 8571 dbSNP
rs1417363764 8578 dbSNP
rs1181776287 8580 dbSNP
rs1364864784 8582 dbSNP
rs1455735241 8592 dbSNP
rs1264681189 8597 dbSNP
rs1208834797 8598 dbSNP
rs1480739161 8599 dbSNP
rs571639849 8602 dbSNP
rs538776401 8608 dbSNP
rs1037685155 8610 dbSNP
rs1336948297 8615 dbSNP
rs942120039 8616 dbSNP
rs910629534 8620 dbSNP
rs1389165342 8621 dbSNP
rs986337500 8625 dbSNP
rs1336212942 8629 dbSNP
rs1230022737 8634 dbSNP
rs954819577 8635 dbSNP
rs771758761 8639 dbSNP
rs569996127 8645 dbSNP
rs1323126500 8649 dbSNP
rs1204589541 8661 dbSNP
rs146950951 8666 dbSNP
rs141197848 8668 dbSNP
rs1347427731 8670 dbSNP
rs1020647772 8692 dbSNP
rs1251873393 8697 dbSNP
rs1421338215 8704 dbSNP
rs1010521879 8711 dbSNP
rs957822591 8712 dbSNP
rs1033352646 8716 dbSNP
rs1321635530 8717 dbSNP
rs1386331678 8719 dbSNP
rs1397465348 8722 dbSNP
rs189406814 8732 dbSNP
rs1464332296 8733 dbSNP
rs906339213 8735 dbSNP
rs1046764343 8744 dbSNP
rs1460032219 8747 dbSNP
rs1177722096 8749 dbSNP
rs1481725850 8750 dbSNP
rs1016854727 8758 dbSNP
rs147801240 8759 dbSNP
rs905766888 8763 dbSNP
rs75795881 8769 dbSNP
rs897722214 8775 dbSNP
rs763284104 8778 dbSNP
rs1037737456 8779 dbSNP
rs1226802404 8785 dbSNP
rs1251913653 8790 dbSNP
rs1252140072 8797 dbSNP
rs1484059532 8804 dbSNP
rs1196381535 8805 dbSNP
rs184325288 8809 dbSNP
rs1268786411 8812 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions HEK293 , HUVEC , MCF7
Location of target site 3'UTR
Tools used in this research DIANA-microT , EIMMO , miRanda , miRBase Target Database , PicTar , TargetScan
Article - Fasanaro P; Greco S; Lorenzi M; Pescatori et al.
- The Journal of biological chemistry, 2009
miR-210 is a key player of cell response to hypoxia, modulating cell survival, VEGF-driven endothelial cell migration, and the ability of endothelial cells to form capillary-like structures. A crucial step in understanding microRNA (miRNA) function is the identification of their targets. However, only few miR-210 targets have been identified to date. Here, we describe an integrated strategy for large-scale identification of new miR-210 targets by combining transcriptomics and proteomics with bioinformatic approaches. To experimentally validate candidate targets, the RNA-induced silencing complex (RISC) loaded with miR-210 was purified by immunoprecipitation along with its mRNA targets. The complex was significantly enriched in mRNAs of 31 candidate targets, such as BDNF, GPD1L, ISCU, NCAM, and the non-coding RNA Xist. A subset of the newly identified targets was further confirmed by 3'-untranslated region (UTR) reporter assays, and hypoxia induced down-modulation of their expression was rescued blocking miR-210, providing support for the approach validity. In the case of 9 targets, such as PTPN1 and P4HB, miR-210 seed-pairing sequences localized in the coding sequence or in the 5'-UTR, in line with recent data extending miRNA targeting beyond the "classic" 3'-UTR recognition. Finally, Gene Ontology analysis of the targets highlights known miR-210 impact on cell cycle regulation and differentiation, and predicts a new role of this miRNA in RNA processing, DNA binding, development, membrane trafficking, and amino acid catabolism. Given the complexity of miRNA actions, we view such a multiprong approach as useful to adequately describe the multiple pathways regulated by miR-210 during physiopathological processes.
LinkOut: [PMID: 19826008]
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
KIRC -0.293 0.01 -0.209 0.04 68 Click to see details
BLCA -0.52 0.01 -0.554 0.01 18 Click to see details
THCA 0.242 0.03 0.244 0.03 59 Click to see details
STAD -0.243 0.09 -0.169 0.18 32 Click to see details
LUSC 0.171 0.15 0.180 0.14 38 Click to see details
COAD -0.41 0.16 -0.381 0.18 8 Click to see details
UCEC 0.234 0.17 0.221 0.18 19 Click to see details
HNSC -0.15 0.17 -0.114 0.24 42 Click to see details
ESCA -0.29 0.19 -0.282 0.2 11 Click to see details
PRAD 0.085 0.28 -0.017 0.45 50 Click to see details
KICH 0.115 0.29 0.218 0.15 25 Click to see details
BRCA 0.06 0.29 0.055 0.31 84 Click to see details
LIHC 0.054 0.36 0.076 0.3 49 Click to see details
LUAD 0.11 0.37 0.007 0.49 12 Click to see details
CHOL -0.108 0.39 -0.117 0.38 9 Click to see details
PCPG 0.25 0.42 0.500 0.33 3 Click to see details
KIRP -0.037 0.42 -0.072 0.35 32 Click to see details
CESC 0.15 0.45 -0.500 0.33 3 Click to see details
PAAD -0.014 0.49 -0.200 0.4 4 Click to see details
PAAD -0.014 0.49 -0.200 0.4 4 Click to see details
PAAD -0.014 0.49 -0.200 0.4 4 Click to see details
126 hsa-miR-210-3p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT000149 HOXA9 homeobox A9 4 1
MIRT000150 TP53I11 tumor protein p53 inducible protein 11 2 1