pre-miRNA Information
pre-miRNA hsa-mir-9-1   
Genomic Coordinates chr1: 156420341 - 156420429
Synonyms MIRN9-1, hsa-mir-9-1, miRNA9-1, MIR9-1
Description Homo sapiens miR-9-1 stem-loop
Comment None
RNA Secondary Structure
Associated Diseases
pre-miRNA hsa-mir-9-2   
Genomic Coordinates chr5: 88666853 - 88666939
Synonyms MIRN9-2, hsa-mir-9-2, miRNA9-2, MIR9-2
Description Homo sapiens miR-9-2 stem-loop
Comment None
RNA Secondary Structure
Associated Diseases
pre-miRNA hsa-mir-9-3   
Genomic Coordinates chr15: 89368017 - 89368106
Synonyms MIRN9-3, hsa-mir-9-3, miRNA9-3, MIR9-3
Description Homo sapiens miR-9-3 stem-loop
Comment None
RNA Secondary Structure
Associated Diseases

Mature miRNA Information
Mature miRNA hsa-miR-9-3p
Sequence 55| AUAAAGCUAGAUAACCGAAAGU |76
Evidence Experimental
Experiments Cloned
Editing Events in miRNAs
Modification Type Position on miR Chromosome DNA Strand Genomic Position (hg38) List of PMIDs Variant details
A-to-I 3 5 - 88666885 29233923 MiREDiBase
A-to-I 4 5 - 88666884 29233923 MiREDiBase
A-to-I 9 5 - 88666879 29233923 MiREDiBase
DRVs in miRNA
Mutant ID Mutant Position Mutant Source
COSN31960324 17 COSMIC
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs1428606438 1 dbSNP
rs1192952757 1 dbSNP
rs1197359739 3 dbSNP
rs1420873000 6 dbSNP
rs1329786937 6 dbSNP
rs1251131659 9 dbSNP
rs1409650445 9 dbSNP
rs1398529788 10 dbSNP
rs1345765627 11 dbSNP
rs1395768331 11 dbSNP
rs1178970449 16 dbSNP
rs1176436057 17 dbSNP
rs534354316 21 dbSNP
Putative Targets

miRNA Expression profile
Human miRNA Tissue Atlas
miRNAs in Extracellular Vesicles
Circulating MicroRNA Expression Profiling
Biomarker Information
Biomarker ID Name Type Discovered From Mode Level Source Testing Methods
BOS25P miR-9 Safety Biomarker (SAF) Clinical/Experimental Data Expression Increase Serum Real-time reverse transcription PCR
Gene Information
Gene Symbol RCOR1   
Synonyms COREST, RCOR
Description REST corepressor 1
Transcript NM_015156   
Expression
Putative miRNA Targets on RCOR1
3'UTR of RCOR1
(miRNA target sites are highlighted)
>RCOR1|NM_015156|3'UTR
   1 GAAACTGGTGGCTTTGAACACTTGGTGTGGACTACTGTGTTATCCGGGATATCAGGTATTATGAGACATCACCTAGCCAT
  81 CTGCATCACATCTCTCTGGACAAGCAGCTATTACCAAAAAAGGCATATACTTCCAGTCCTGTGCTCCATCTGCCTTAATT
 161 CTTTGCTCGTTCCTCCATGTTGGCGCCACTTCCCAGAGAGCTCCACTGCATCTCACACTCTGCCCACGTGCTGGGGAAGT
 241 CTCACGGCCTGCACATCTCTTGTGACTCTGGGAACCGCCTCTCCCGCCGGAGCCCCCGAGCCCCACCAATGGCAGCTCTT
 321 CCCAGTCAGCAGCTTCAGAGCAGGCAGTCTCCTTGGAAGGCCCGACTCTGTTCCTGCATGGCCTGCAGTTTCTACTTTGT
 401 GCATAGAGTCATTTTCAGAGTCACCGCGACCCTGTTGGCCTTCTAGAAAGTTTCTTTTGTTCTTTTCTGAGACAACCACC
 481 TAAGTGATAATACGCTTTTTTGGAAACTAATATATATTGCCAGACTGCATCATAACCTTTATCATGCCAAGCATCCTGAT
 561 GCAACTCACATTTCCCTAAACATGGGGTACAGTTATGATTTATAAATTGAGTTGGCTTAAATCTCCCTCTTCTCCCTTCC
 641 CAAGTGTTACAAAGATCATTTACTGCAACTGTCGTTGGACACTGTAGCTTAAAGGGAACGTGGACCTCAATGCTTTCTGC
 721 CTTCAACTTTTCAGCATTGTGACCCCAGGGTGGTTGCCACCCCATCTTTTCCTGACCCCCCCCACCCCCCCACCTCCAAG
 801 AGGTTCGGCCCACATCACTGTACCTGGTGCTTGTAAATTTGGAATTGGTGCCTTCTCCTTTTGGCAACCATGGTTATCAA
 881 TCCTTTTTCTGTTTTAGTGTCTTATTTCTTCTTTCAAGTTATTTGCTAGCCAAAGATGACATCACTGAGATTAGGAGACA
 961 GGGGAGAGCTTGCTGCAGATTCTGACAGTGCAGATTTTAAATGTCAGGATATTAGAATAGCTGGCGCTGGTTTATGAAAG
1041 CTGCGCGTTGTTCCGCGTTCTCTCGGTGTGCCTGGCCTTTTATGTGGCACTCTGTATGTCAGTTTGTGTCCTTCATGTGC
1121 TGATGTGATTACACAAACACCATGCACTCTCTTTTCATATCAGAGTACAGGACAGAGAAGTGATCAATGTATTGGTCTAG
1201 TGAGACTGAGATGAAAAGAAATAACCTACAGAGTGGTCTGTAATGCCTTTTGGTTGGACTGGGAACAAGTAAAAATTTCT
1281 AATAAACATTTTGAGACTTCCAGAATCACTTTTGTTATCTTATCAGACCATGGGCCTGCTGAGGGTTGAGCAGACAGCCT
1361 GCATTCTAACATACCCTGTTCCCACCCCACGGCCATTCAGACTGCACTCAATACGCTGAAGTCGCTTTTGTTGTTGTTGT
1441 TGTTGTTTGCATCATTTGGATTTTTTTCCTGCTTTCAATACCAAAAAAATGCAGATGCTTTAAGGCCTAAACAGAATTCT
1521 GAAGAATTTAAAATATGCAATTAAAGTTTGATATGTTTTGTCTCCCAAGCACCTTGTTTTTTGTTGTTGTTGTTGTTGTT
1601 GAAGTCAGCTGATTTTCTCTTTAGAAAGAGGGTCAGCTAGAAACCTAGGTTTTTTGGAATTGTAAATTTTTTTTTAGTAT
1681 AGTCTGGAGAGAAAGGTCATTCAAAAGGAAAGTACAATGGGACTTGCTGCCCTTCATCATCTCGTTCCCGTGCCAGGTGT
1761 GTGTTGGTCACGTAAAAGCCTGGGAAGCATCAGAGGAGTCCCGGATTGCTGCTGCTACCTGGAGACAGGGTTAGCAAAAT
1841 AACACTAGTGATGAGGGAGAGGCTTCTTTTCACCATAAGCCTGCTGTGTACACCGAGGGCGGCAGGAGAAGCATGGGAAG
1921 GAGTCAGCCTAAGTTTGCACATTGCATAAAGGGTACACTAAGGTATGAGCTGAAGCTTTAGGTTCTCCGTGCTTCCCTCA
2001 AGACCTCCTTCTTGCTAACAGAAGCAGTAGGCAATTGCTGCAGTGCGTTTCTCACCCTGCCAATAGGTCTGTCTGTATCT
2081 CTGTTAAGGAAAATAGCCTGGTCCCTCCTGGCAGTGCTTGGAAGCTTGATGCTAATTTTTATATAGCGTGGCAAACTGAC
2161 CAGCAGTGCCAGGCCTTGATCTGTATTCTGCACTATCCCTTTACTTGGTTCCTGGCACTGAATGGTCTCCAGCCCTGAAG
2241 AATCACGTGTGATCACAGCAGCTGACCTGGGCTTTCTCCCCGAGAGGAAGGGGCATGTCATTTTTATTTGACAGAGGGAA
2321 AATGGGAGCTGTCCTTGACTGCCTTTGTTGTGCTTTCCCGCGTAAGATAGCACTGTGTTTTAAACTGTTGCATTACACTG
2401 TCTTTGCAATGATGTAAATGTAAGAAATCACTTAGCTTTAAAAGCGCAGTGGTTTGATCTTATTTATATGAAGACTTTTT
2481 AACATATCAAGAATTAGGTGCATTGGCAGGTAGGGTTTGGGGTGTGATAACTGCTTCAGATGGAATGTTCACTTAAGCTT
2561 TGTCTTCTTAAAAATTATCAATGTGAATGTCATAATTATATATATTTTTGTGGAAAATTTTCTCCTAAGTATAAGTTATT
2641 GTGCAAAATATAGTGTCATTGATGCAAATAATAGTTTAACTTTTAGTTTAGAACTCCTAAAAGATATAAATTGTATTGCA
2721 TATGCATTAAAAGTTTGTTTTATTTAATTTTATGTAGATGTGTGAAGTGTTAGGTAAAATTTTTTTCACTTATCCATTTA
2801 AACACCTTGTTACTTGAATATTGTGTTGACTGGTCTGCAACAGTGATCCATTCTGTAATATAGCTCTTTTAACTGGGAAG
2881 GAACCACACCCCAGTTGTGCCGATTACATTAGTGTTGGCACACAGTCGGGTGCTAGTGTAACACAAATGCCGCGTTGTCT
2961 GGGTGTACAGTGTTTGTGGAGACGCCACTTCCTCAAAATGGTTTTTGATTGTTTTTAACCTATAAGACGTTCTGATGCTC
3041 ACAAACCTCTATTCAACACACAAAACAAACATGAAAAGGTAGTTAGTTGGGTTGTAACAGCTTACTGGGGTGGACTCATA
3121 AAACAGTGGCTTTCTGTTCATCTAAAGTTTCCTCAGATACCACAGACCACTGTTAAGTGTGCTCATTGTCACTTTAAATT
3201 TCAACGATACCCTATTTTTGTCATTCTAAATATCAGATGTACTATTGGTATAATTGCACACCAAAAATAAGCCAAACAGT
3281 GCATTACGCTAACTGGATCCCTGCTTTTATGTGAGCTAAGGAAAGATGGAGCCAACTCCAACGAGGGCCTCTTTTTCTCT
3361 CTTGTCTAGCCTGTTTCTAAACCGAATGATCCAGGATTCAAGCTTCTATTGTCAAGTGAAACTTTCCTCAGATGGACTCC
3441 AGGTAGCCAGGTCACCTAAACCTAGTGGTCCTGTGCGATGCTCTTTCTGCCAGTCCCTGAATCTCTGCAGCTTCTCTTAC
3521 CTGTCTTACCTGTAGTAAAGCACAATTGCAGTGGCGTCGCATTCAGAAGAAGGGAAGGTCAGCAGAGGCTATGCATGTTG
3601 TGTGATGATGAGTGTTTACAGCCACCTTCTCCTAAAACGAAATTTATACCGGGGTGGATAGTATTCCATTAGGTAGACTT
3681 ATCGACTTTGCTAAGTGCTTTTTAGACAGCTTAAAAAATTTTCAAGATTTTAAAAGATGTATAAGGTTAAGTTTGCAAAT
3761 ATAATGGAAATGCTGTATATCTTTTGAAGTGATGAAATCCACGTTGGAATTTTAAAGAAAATATGTTGTAATAATGCTGT
3841 TGTAAGTAATATTTTAATGTCTCTTTGCCTGTTTTCTATTTCAGCACATTCATTGTGGTGAATGTTCATAGCATTATAAC
3921 TGCTTAGCCATTGAATGATAACATTTGTTAGTGGAAATTGGAAAATTTATTTGTGAAATTCTGCAGAATTCATTTTTCTA
4001 TTTCCAATATTTGCTGAGGTTAAATAAAAATTTTCAAGCCATTGATGTAATAAAATATGAAATGAAAGCAAAAAAAAAAA
4081 AAAAAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' ugaaagccAAUAGAUCGAAAUa 5'
                  | | :|||||||| 
Target 5' gtaagaaaTCACTTAGCTTTAa 3'
2420 - 2441 150.00 -6.50
2
miRNA  3' ugaaagCCA-A-UAGA--UCGAAAUa 5'
                ||| | | ||  ||||||| 
Target 5' cactaaGGTATGAGCTGAAGCTTTAg 3'
1956 - 1981 146.00 -8.00
3
miRNA  3' ugaAAGCCAAUAGAUCGAAAUa 5'
             |||  |||   ||||||: 
Target 5' atgTTCACTTA---AGCTTTGt 3'
2545 - 2563 136.00 -6.30
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN26991870 26 COSMIC
COSN30447225 30 COSMIC
COSN31961041 30 COSMIC
COSN31495145 56 COSMIC
COSN30448913 74 COSMIC
COSN31492702 185 COSMIC
COSN19659879 784 COSMIC
COSN26481980 963 COSMIC
COSN31570437 1045 COSMIC
COSN29682672 1490 COSMIC
COSN1164487 1609 COSMIC
COSN17597774 1715 COSMIC
COSN22152256 2138 COSMIC
COSN23736532 2318 COSMIC
COSN8822096 2351 COSMIC
COSN28815666 2474 COSMIC
COSN28700107 2523 COSMIC
COSN31524436 2586 COSMIC
COSN30166923 2681 COSMIC
COSN26635726 2725 COSMIC
COSN31589756 2762 COSMIC
COSN19280275 2821 COSMIC
COSN31533100 2827 COSMIC
COSN16328285 2894 COSMIC
COSN8139621 2995 COSMIC
COSN28463041 3009 COSMIC
COSN31488210 3045 COSMIC
COSN8587989 3235 COSMIC
COSN30169794 3240 COSMIC
COSN31485241 3288 COSMIC
COSN26640529 3302 COSMIC
COSN31561806 3330 COSMIC
COSN29372385 3382 COSMIC
COSN30174639 3500 COSMIC
COSN8822097 3560 COSMIC
COSN31568310 3717 COSMIC
COSN6241403 3804 COSMIC
COSN14540070 3827 COSMIC
COSN31563053 3869 COSMIC
COSN31551277 4040 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs753773375 2 dbSNP
rs1322206868 6 dbSNP
rs1235116854 11 dbSNP
rs765111166 12 dbSNP
rs1328303118 13 dbSNP
rs1232747037 26 dbSNP
rs1209583752 27 dbSNP
rs571083870 29 dbSNP
rs761922982 32 dbSNP
rs927922042 35 dbSNP
rs767632520 36 dbSNP
rs1256787476 38 dbSNP
rs750622609 44 dbSNP
rs1157673797 45 dbSNP
rs35703706 46 dbSNP
rs756291806 46 dbSNP
rs373986965 47 dbSNP
rs1208299418 48 dbSNP
rs539742580 49 dbSNP
rs1346553380 50 dbSNP
rs755368011 52 dbSNP
rs1327297767 55 dbSNP
rs1349695410 57 dbSNP
rs957217513 63 dbSNP
rs368325038 67 dbSNP
rs1449317060 68 dbSNP
rs1437934061 69 dbSNP
rs745598289 73 dbSNP
rs186355774 84 dbSNP
rs946942062 90 dbSNP
rs1051012722 93 dbSNP
rs532208768 102 dbSNP
rs569295194 111 dbSNP
rs1006563823 126 dbSNP
rs1040703628 128 dbSNP
rs1212455039 130 dbSNP
rs1424219262 139 dbSNP
rs1191614824 141 dbSNP
rs866557793 144 dbSNP
rs900806746 147 dbSNP
rs1270765000 156 dbSNP
rs994052929 169 dbSNP
rs535202035 170 dbSNP
rs190752876 174 dbSNP
rs1463641124 178 dbSNP
rs2295695 186 dbSNP
rs1211107969 189 dbSNP
rs1311929186 190 dbSNP
rs1183439223 194 dbSNP
rs1023878235 196 dbSNP
rs1231128626 197 dbSNP
rs1474842628 211 dbSNP
rs147934723 216 dbSNP
rs1433706454 228 dbSNP
rs557772790 229 dbSNP
rs982169754 230 dbSNP
rs1304160902 234 dbSNP
rs921426172 236 dbSNP
rs1358317266 244 dbSNP
rs1467288886 246 dbSNP
rs1171485999 247 dbSNP
rs1431447914 250 dbSNP
rs1329751360 256 dbSNP
rs531579152 261 dbSNP
rs956659208 267 dbSNP
rs1426755976 268 dbSNP
rs1440403207 277 dbSNP
rs1286329433 278 dbSNP
rs988541625 285 dbSNP
rs578031424 286 dbSNP
rs1233235925 287 dbSNP
rs998450799 288 dbSNP
rs182606768 289 dbSNP
rs1050627165 290 dbSNP
rs1226852729 292 dbSNP
rs576482289 296 dbSNP
rs542364643 298 dbSNP
rs1040735036 299 dbSNP
rs1022791360 301 dbSNP
rs971598566 302 dbSNP
rs900922841 304 dbSNP
rs1370957968 306 dbSNP
rs993886931 310 dbSNP
rs1237872248 321 dbSNP
rs1460434743 341 dbSNP
rs760126761 344 dbSNP
rs141619452 345 dbSNP
rs767903373 348 dbSNP
rs753173591 351 dbSNP
rs761066197 352 dbSNP
rs1425734765 360 dbSNP
rs1023487703 361 dbSNP
rs1184618435 363 dbSNP
rs796561562 364 dbSNP
rs186278757 365 dbSNP
rs1194541800 369 dbSNP
rs1489734425 369 dbSNP
rs982805282 377 dbSNP
rs1003638622 384 dbSNP
rs1244861447 388 dbSNP
rs573739701 395 dbSNP
rs909872174 399 dbSNP
rs1344393363 401 dbSNP
rs1229880594 408 dbSNP
rs956775428 410 dbSNP
rs962821822 411 dbSNP
rs988185419 412 dbSNP
rs866769560 421 dbSNP
rs1287457988 426 dbSNP
rs915195378 427 dbSNP
rs548017320 428 dbSNP
rs77691280 429 dbSNP
rs533479868 431 dbSNP
rs764419813 433 dbSNP
rs1161581106 435 dbSNP
rs1473058184 440 dbSNP
rs147063235 444 dbSNP
rs944907982 446 dbSNP
rs1269080988 450 dbSNP
rs924878674 450 dbSNP
rs934897761 451 dbSNP
rs976218767 451 dbSNP
rs117752332 457 dbSNP
rs1270765994 460 dbSNP
rs892800053 463 dbSNP
rs1220620122 474 dbSNP
rs1278950631 480 dbSNP
rs1329397084 482 dbSNP
rs75017083 494 dbSNP
rs1236606242 495 dbSNP
rs1208543716 496 dbSNP
rs1332613694 499 dbSNP
rs1301825497 508 dbSNP
rs1044504172 509 dbSNP
rs546940441 514 dbSNP
rs138253634 516 dbSNP
rs886385650 520 dbSNP
rs1157112464 526 dbSNP
rs565724103 528 dbSNP
rs534414473 537 dbSNP
rs1044970197 538 dbSNP
rs1378601262 543 dbSNP
rs905103751 551 dbSNP
rs1003418948 556 dbSNP
rs1250497505 557 dbSNP
rs780931735 559 dbSNP
rs557971125 561 dbSNP
rs1203019926 565 dbSNP
rs892561687 566 dbSNP
rs1346801238 593 dbSNP
rs1256400390 594 dbSNP
rs1010041433 597 dbSNP
rs1022296572 598 dbSNP
rs577894221 608 dbSNP
rs968419113 616 dbSNP
rs1299804046 627 dbSNP
rs986140593 637 dbSNP
rs537369004 640 dbSNP
rs1364548549 641 dbSNP
rs1017851340 642 dbSNP
rs1398041379 647 dbSNP
rs1172176880 654 dbSNP
rs966247884 655 dbSNP
rs1172338693 658 dbSNP
rs1362931792 659 dbSNP
rs1028799215 666 dbSNP
rs976251418 669 dbSNP
rs1169788577 674 dbSNP
rs919397739 675 dbSNP
rs8017727 676 dbSNP
rs1241040252 678 dbSNP
rs576520449 690 dbSNP
rs909559242 691 dbSNP
rs542164557 693 dbSNP
rs747939726 696 dbSNP
rs934951573 701 dbSNP
rs1044752726 711 dbSNP
rs775446971 727 dbSNP
rs1345548092 736 dbSNP
rs905136204 739 dbSNP
rs1346772977 743 dbSNP
rs1231723301 746 dbSNP
rs1276599661 755 dbSNP
rs1287939918 758 dbSNP
rs990321151 761 dbSNP
rs371613479 765 dbSNP
rs939220130 766 dbSNP
rs1204462511 770 dbSNP
rs1247148305 775 dbSNP
rs1282114140 775 dbSNP
rs11380772 776 dbSNP
rs11410469 776 dbSNP
rs1413252154 776 dbSNP
rs1424032031 776 dbSNP
rs1418040124 777 dbSNP
rs1429706684 777 dbSNP
rs1445349816 777 dbSNP
rs201782250 778 dbSNP
rs1201167953 780 dbSNP
rs1368678972 782 dbSNP
rs1253801794 784 dbSNP
rs1186785092 785 dbSNP
rs1253730833 785 dbSNP
rs888059958 785 dbSNP
rs1192098936 789 dbSNP
rs1205663130 790 dbSNP
rs1437145630 792 dbSNP
rs1004821533 793 dbSNP
rs1211713660 794 dbSNP
rs1056327533 795 dbSNP
rs1454677527 796 dbSNP
rs1357148359 797 dbSNP
rs1169181744 798 dbSNP
rs892253309 800 dbSNP
rs1231710589 801 dbSNP
rs34851392 804 dbSNP
rs1289342444 807 dbSNP
rs1383513364 808 dbSNP
rs1022834689 809 dbSNP
rs1326187444 811 dbSNP
rs1326009465 813 dbSNP
rs1406533087 821 dbSNP
rs903933112 824 dbSNP
rs1163695204 825 dbSNP
rs1369738622 837 dbSNP
rs572544648 839 dbSNP
rs1007539153 851 dbSNP
rs1017545209 858 dbSNP
rs906970922 859 dbSNP
rs1182619981 870 dbSNP
rs1311066619 874 dbSNP
rs938432490 878 dbSNP
rs1452205124 880 dbSNP
rs1238149102 881 dbSNP
rs541152439 883 dbSNP
rs1258882523 886 dbSNP
rs976281136 889 dbSNP
rs1269072247 896 dbSNP
rs1048057158 898 dbSNP
rs886272608 906 dbSNP
rs1277056753 919 dbSNP
rs1233139823 934 dbSNP
rs1437832076 940 dbSNP
rs1371037916 955 dbSNP
rs1006147264 960 dbSNP
rs1324612056 960 dbSNP
rs777426029 961 dbSNP
rs564368201 962 dbSNP
rs1026444479 964 dbSNP
rs74084139 976 dbSNP
rs776495782 978 dbSNP
rs1405550666 980 dbSNP
rs558635037 981 dbSNP
rs984970383 983 dbSNP
rs1192811466 988 dbSNP
rs1478296937 993 dbSNP
rs909664586 1000 dbSNP
rs879203195 1001 dbSNP
rs962475735 1012 dbSNP
rs898514430 1016 dbSNP
rs1191814094 1020 dbSNP
rs980463996 1027 dbSNP
rs1248803317 1031 dbSNP
rs1215343311 1044 dbSNP
rs926251231 1045 dbSNP
rs543724754 1047 dbSNP
rs748984206 1048 dbSNP
rs971860656 1051 dbSNP
rs563601098 1053 dbSNP
rs913810678 1055 dbSNP
rs770456102 1056 dbSNP
rs149149103 1057 dbSNP
rs1289038069 1058 dbSNP
rs549012282 1065 dbSNP
rs903963734 1066 dbSNP
rs1435163970 1068 dbSNP
rs773975481 1069 dbSNP
rs1171687901 1073 dbSNP
rs1451342138 1075 dbSNP
rs990373633 1076 dbSNP
rs1393071793 1077 dbSNP
rs565527641 1079 dbSNP
rs1304378741 1085 dbSNP
rs1484996222 1093 dbSNP
rs528221524 1095 dbSNP
rs1211261919 1097 dbSNP
rs1485554715 1099 dbSNP
rs551165730 1109 dbSNP
rs1231288869 1116 dbSNP
rs980204846 1125 dbSNP
rs928313780 1127 dbSNP
rs1459454491 1132 dbSNP
rs901813894 1134 dbSNP
rs758953942 1135 dbSNP
rs1390547705 1142 dbSNP
rs1304606841 1143 dbSNP
rs938469890 1161 dbSNP
rs1027018606 1166 dbSNP
rs1431583204 1169 dbSNP
rs1233844833 1170 dbSNP
rs1047434929 1172 dbSNP
rs143183206 1175 dbSNP
rs1006826469 1183 dbSNP
rs1016422565 1186 dbSNP
rs537207570 1188 dbSNP
rs1037642872 1193 dbSNP
rs776076244 1198 dbSNP
rs1475057511 1203 dbSNP
rs190751671 1205 dbSNP
rs926283819 1212 dbSNP
rs996097808 1213 dbSNP
rs567519332 1219 dbSNP
rs1203199891 1222 dbSNP
rs764509502 1231 dbSNP
rs1444546811 1234 dbSNP
rs536147351 1237 dbSNP
rs1354537377 1245 dbSNP
rs891087454 1253 dbSNP
rs1291175463 1254 dbSNP
rs1008735161 1259 dbSNP
rs1417861425 1264 dbSNP
rs1297545222 1267 dbSNP
rs76015769 1272 dbSNP
rs1473932218 1276 dbSNP
rs77721803 1279 dbSNP
rs945299759 1288 dbSNP
rs1373222434 1297 dbSNP
rs1043963911 1301 dbSNP
rs1184766769 1304 dbSNP
rs1461198122 1306 dbSNP
rs1420121536 1309 dbSNP
rs1250347613 1310 dbSNP
rs1175999873 1313 dbSNP
rs148280054 1314 dbSNP
rs74949278 1323 dbSNP
rs141249247 1324 dbSNP
rs146232369 1327 dbSNP
rs1353546122 1329 dbSNP
rs543566780 1331 dbSNP
rs1229935542 1332 dbSNP
rs1336146705 1333 dbSNP
rs959701203 1335 dbSNP
rs1389637101 1337 dbSNP
rs1369691921 1339 dbSNP
rs1047707437 1341 dbSNP
rs1326638680 1352 dbSNP
rs1461043642 1356 dbSNP
rs1392546789 1357 dbSNP
rs1161655170 1358 dbSNP
rs563539896 1363 dbSNP
rs907603468 1382 dbSNP
rs776089174 1383 dbSNP
rs1016845091 1385 dbSNP
rs905995430 1388 dbSNP
rs74084140 1391 dbSNP
rs1467645787 1392 dbSNP
rs183407184 1397 dbSNP
rs1206555035 1405 dbSNP
rs1051652544 1412 dbSNP
rs559327123 1415 dbSNP
rs1033467396 1416 dbSNP
rs528045326 1424 dbSNP
rs992263107 1425 dbSNP
rs1020590269 1428 dbSNP
rs1287459948 1428 dbSNP
rs577408404 1428 dbSNP
rs762604665 1428 dbSNP
rs1396145547 1431 dbSNP
rs1173581011 1434 dbSNP
rs1187726783 1434 dbSNP
rs967048169 1445 dbSNP
rs750527845 1452 dbSNP
rs1447194182 1456 dbSNP
rs1427457403 1479 dbSNP
rs1167840978 1483 dbSNP
rs746932091 1483 dbSNP
rs1379076640 1488 dbSNP
rs1435086258 1490 dbSNP
rs925117445 1495 dbSNP
rs1233502811 1517 dbSNP
rs1345764835 1521 dbSNP
rs551468703 1533 dbSNP
rs943241496 1534 dbSNP
rs571323333 1538 dbSNP
rs970212443 1547 dbSNP
rs530728147 1554 dbSNP
rs1035919956 1555 dbSNP
rs138047669 1562 dbSNP
rs1312767109 1574 dbSNP
rs567453236 1575 dbSNP
rs1372998937 1577 dbSNP
rs1433371824 1577 dbSNP
rs1257020538 1581 dbSNP
rs1258003535 1581 dbSNP
rs200468608 1581 dbSNP
rs536576254 1581 dbSNP
rs546279181 1581 dbSNP
rs762219583 1581 dbSNP
rs544288221 1584 dbSNP
rs1484635021 1588 dbSNP
rs566080878 1599 dbSNP
rs1196448482 1600 dbSNP
rs1293692608 1609 dbSNP
rs767473794 1613 dbSNP
rs1338842875 1615 dbSNP
rs559597199 1623 dbSNP
rs1235399803 1626 dbSNP
rs1483119423 1628 dbSNP
rs1356385546 1630 dbSNP
rs1037989027 1631 dbSNP
rs931804508 1633 dbSNP
rs987811200 1635 dbSNP
rs911836321 1638 dbSNP
rs1346278408 1639 dbSNP
rs1409981444 1644 dbSNP
rs1395170927 1649 dbSNP
rs1165752314 1658 dbSNP
rs1418179958 1667 dbSNP
rs1462664220 1667 dbSNP
rs878944032 1667 dbSNP
rs534671571 1669 dbSNP
rs906110141 1674 dbSNP
rs1053084084 1678 dbSNP
rs1001725490 1679 dbSNP
rs947478251 1680 dbSNP
rs752582293 1682 dbSNP
rs1270938554 1684 dbSNP
rs1184317987 1688 dbSNP
rs1043089307 1690 dbSNP
rs896249808 1690 dbSNP
rs1254427493 1694 dbSNP
rs1272861464 1695 dbSNP
rs142406233 1697 dbSNP
rs75913791 1698 dbSNP
rs1280597213 1700 dbSNP
rs537141200 1705 dbSNP
rs1328655889 1709 dbSNP
rs1334552871 1709 dbSNP
rs77550311 1710 dbSNP
rs1402274655 1714 dbSNP
rs1159741562 1716 dbSNP
rs45485304 1718 dbSNP
rs113970453 1724 dbSNP
rs1287199100 1738 dbSNP
rs116422370 1744 dbSNP
rs559759580 1745 dbSNP
rs1231166519 1748 dbSNP
rs973179330 1750 dbSNP
rs572804484 1751 dbSNP
rs953225964 1765 dbSNP
rs1369190510 1767 dbSNP
rs933421644 1772 dbSNP
rs983519066 1773 dbSNP
rs907941842 1803 dbSNP
rs987335486 1804 dbSNP
rs942080485 1806 dbSNP
rs1038087851 1808 dbSNP
rs544974236 1811 dbSNP
rs937548093 1829 dbSNP
rs145982076 1836 dbSNP
rs756989822 1840 dbSNP
rs377033145 1846 dbSNP
rs935251115 1847 dbSNP
rs1212953150 1848 dbSNP
rs1399967672 1851 dbSNP
rs778374997 1853 dbSNP
rs1378339643 1862 dbSNP
rs1175456228 1863 dbSNP
rs1274537505 1864 dbSNP
rs1468601883 1866 dbSNP
rs1394587166 1867 dbSNP
rs988015005 1872 dbSNP
rs1486957239 1881 dbSNP
rs1013761358 1882 dbSNP
rs562492429 1884 dbSNP
rs1445639892 1888 dbSNP
rs1250826007 1890 dbSNP
rs1235710901 1892 dbSNP
rs1347843752 1895 dbSNP
rs745390764 1896 dbSNP
rs1217027343 1901 dbSNP
rs902258720 1902 dbSNP
rs371620881 1906 dbSNP
rs187086423 1915 dbSNP
rs1031956626 1942 dbSNP
rs964613962 1946 dbSNP
rs371224253 1947 dbSNP
rs1374823679 1948 dbSNP
rs1407079910 1951 dbSNP
rs1174021055 1954 dbSNP
rs529816234 1956 dbSNP
rs1057306218 1958 dbSNP
rs895972227 1959 dbSNP
rs1186159186 1965 dbSNP
rs1005174335 1970 dbSNP
rs1260013728 1977 dbSNP
rs1015172594 1979 dbSNP
rs562620212 1986 dbSNP
rs1417280485 1987 dbSNP
rs1485624216 1989 dbSNP
rs45547632 1990 dbSNP
rs566604444 1996 dbSNP
rs1207339822 2002 dbSNP
rs139461966 2004 dbSNP
rs1273212948 2006 dbSNP
rs954599644 2007 dbSNP
rs1338017049 2011 dbSNP
rs1462066300 2016 dbSNP
rs1294874587 2030 dbSNP
rs983685279 2032 dbSNP
rs907975078 2035 dbSNP
rs1029048810 2047 dbSNP
rs953164475 2048 dbSNP
rs987586925 2048 dbSNP
rs1018817609 2054 dbSNP
rs1035228477 2055 dbSNP
rs1464245350 2057 dbSNP
rs1420369944 2064 dbSNP
rs1299104097 2065 dbSNP
rs963778697 2071 dbSNP
rs1475090158 2076 dbSNP
rs973414550 2078 dbSNP
rs988045942 2082 dbSNP
rs1465333835 2099 dbSNP
rs747568485 2101 dbSNP
rs1222583430 2102 dbSNP
rs915139814 2106 dbSNP
rs927255031 2113 dbSNP
rs149674687 2135 dbSNP
rs978797024 2142 dbSNP
rs1333902449 2145 dbSNP
rs1334915485 2146 dbSNP
rs375010428 2147 dbSNP
rs1393098570 2148 dbSNP
rs1374034312 2149 dbSNP
rs937483381 2155 dbSNP
rs8006699 2156 dbSNP
rs777204090 2161 dbSNP
rs561750329 2164 dbSNP
rs1042260664 2165 dbSNP
rs537173816 2170 dbSNP
rs1367123538 2171 dbSNP
rs940822446 2174 dbSNP
rs1036510560 2193 dbSNP
rs1000997101 2196 dbSNP
rs1204911528 2197 dbSNP
rs762073166 2208 dbSNP
rs1177458978 2220 dbSNP
rs1254427356 2223 dbSNP
rs900140725 2224 dbSNP
rs192258910 2228 dbSNP
rs574190213 2243 dbSNP
rs144382869 2247 dbSNP
rs1240995054 2248 dbSNP
rs1004746706 2250 dbSNP
rs888776983 2251 dbSNP
rs1237982737 2255 dbSNP
rs1373321300 2259 dbSNP
rs1008680398 2265 dbSNP
rs1440411023 2269 dbSNP
rs1015142377 2282 dbSNP
rs1164316057 2283 dbSNP
rs1411812019 2288 dbSNP
rs1157397335 2289 dbSNP
rs1411896843 2291 dbSNP
rs956561393 2294 dbSNP
rs1171504255 2298 dbSNP
rs1009372333 2310 dbSNP
rs963511762 2322 dbSNP
rs1022054160 2324 dbSNP
rs1408458302 2332 dbSNP
rs1486080378 2340 dbSNP
rs967943674 2342 dbSNP
rs973445734 2354 dbSNP
rs182918812 2360 dbSNP
rs573505759 2361 dbSNP
rs992826029 2362 dbSNP
rs1329556169 2363 dbSNP
rs1383068908 2374 dbSNP
rs1413559088 2374 dbSNP
rs545705729 2397 dbSNP
rs766494861 2410 dbSNP
rs1290941820 2428 dbSNP
rs113072246 2438 dbSNP
rs958946428 2445 dbSNP
rs148788175 2446 dbSNP
rs187938015 2447 dbSNP
rs1271903666 2453 dbSNP
rs756106990 2461 dbSNP
rs1375512773 2469 dbSNP
rs992951603 2478 dbSNP
rs917359076 2485 dbSNP
rs1262167896 2488 dbSNP
rs1305545398 2499 dbSNP
rs1212824210 2507 dbSNP
rs544341623 2510 dbSNP
rs990678684 2512 dbSNP
rs940727645 2513 dbSNP
rs1036542071 2515 dbSNP
rs915142073 2517 dbSNP
rs768772784 2519 dbSNP
rs936429400 2521 dbSNP
rs11548118 2523 dbSNP
rs900256750 2525 dbSNP
rs1253241102 2527 dbSNP
rs1476459039 2531 dbSNP
rs930949626 2538 dbSNP
rs1051109417 2541 dbSNP
rs1168710883 2548 dbSNP
rs1276673388 2548 dbSNP
rs1417084675 2563 dbSNP
rs931671327 2566 dbSNP
rs888815849 2575 dbSNP
rs1312820779 2579 dbSNP
rs1051363582 2586 dbSNP
rs1008960778 2587 dbSNP
rs890390575 2590 dbSNP
rs759083620 2592 dbSNP
rs1428155672 2597 dbSNP
rs1009235109 2599 dbSNP
rs1359947021 2600 dbSNP
rs1476066678 2603 dbSNP
rs1005183066 2604 dbSNP
rs775303608 2604 dbSNP
rs1014762836 2605 dbSNP
rs1440732608 2618 dbSNP
rs1196506523 2622 dbSNP
rs1252720174 2622 dbSNP
rs529904123 2624 dbSNP
rs1434670407 2626 dbSNP
rs1256406488 2630 dbSNP
rs898964646 2632 dbSNP
rs994659192 2633 dbSNP
rs1284086467 2634 dbSNP
rs1034457376 2640 dbSNP
rs1338100874 2645 dbSNP
rs967850124 2646 dbSNP
rs1446965756 2647 dbSNP
rs118166758 2652 dbSNP
rs1168106964 2655 dbSNP
rs992861770 2677 dbSNP
rs1327648084 2682 dbSNP
rs756937852 2695 dbSNP
rs1033998232 2696 dbSNP
rs1269212035 2697 dbSNP
rs1024691815 2705 dbSNP
rs1182534217 2708 dbSNP
rs960633645 2708 dbSNP
rs1457381048 2718 dbSNP
rs1236131252 2721 dbSNP
rs778661918 2722 dbSNP
rs1215824589 2723 dbSNP
rs1024278039 2730 dbSNP
rs1280821062 2736 dbSNP
rs377483951 2738 dbSNP
rs560288107 2742 dbSNP
rs1208610064 2743 dbSNP
rs532309718 2753 dbSNP
rs920796603 2754 dbSNP
rs1328817844 2761 dbSNP
rs1442606864 2762 dbSNP
rs1350158284 2764 dbSNP
rs1448800723 2764 dbSNP
rs1050376 2768 dbSNP
rs1403462378 2770 dbSNP
rs1194010016 2780 dbSNP
rs930793912 2781 dbSNP
rs1439123457 2782 dbSNP
rs978051209 2794 dbSNP
rs986422127 2795 dbSNP
rs552029112 2801 dbSNP
rs571326924 2806 dbSNP
rs1454865639 2810 dbSNP
rs745466142 2814 dbSNP
rs1222095534 2815 dbSNP
rs1246417667 2819 dbSNP
rs910812391 2820 dbSNP
rs1449106941 2826 dbSNP
rs944946435 2827 dbSNP
rs1216556703 2831 dbSNP
rs1352200657 2837 dbSNP
rs936198744 2839 dbSNP
rs1306426850 2841 dbSNP
rs1235930159 2844 dbSNP
rs1367862281 2851 dbSNP
rs552247404 2854 dbSNP
rs193205012 2858 dbSNP
rs1171335058 2862 dbSNP
rs1346780014 2864 dbSNP
rs34733381 2875 dbSNP
rs931700669 2889 dbSNP
rs1419000819 2892 dbSNP
rs1358613878 2898 dbSNP
rs79966930 2902 dbSNP
rs1400722244 2903 dbSNP
rs1189714030 2909 dbSNP
rs1043444682 2928 dbSNP
rs890095519 2929 dbSNP
rs569035210 2931 dbSNP
rs115519182 2947 dbSNP
rs1283166938 2949 dbSNP
rs144947055 2952 dbSNP
rs147917943 2953 dbSNP
rs1277432287 2954 dbSNP
rs141762137 2955 dbSNP
rs1024351698 2962 dbSNP
rs962031664 2970 dbSNP
rs1281157090 2976 dbSNP
rs1034176095 2980 dbSNP
rs894570234 2984 dbSNP
rs538031515 2986 dbSNP
rs1205748382 2988 dbSNP
rs1314658181 3001 dbSNP
rs74681622 3003 dbSNP
rs6611 3008 dbSNP
rs1174090944 3009 dbSNP
rs1215756544 3012 dbSNP
rs145438434 3021 dbSNP
rs1033721722 3023 dbSNP
rs1477048371 3024 dbSNP
rs957611901 3027 dbSNP
rs777209963 3029 dbSNP
rs748574531 3030 dbSNP
rs986715524 3037 dbSNP
rs975562641 3039 dbSNP
rs1207488797 3047 dbSNP
rs1308890701 3048 dbSNP
rs921394751 3050 dbSNP
rs1217732636 3062 dbSNP
rs944953922 3063 dbSNP
rs770001820 3075 dbSNP
rs1295004688 3077 dbSNP
rs976299059 3078 dbSNP
rs931751550 3079 dbSNP
rs1378407672 3080 dbSNP
rs78354301 3082 dbSNP
rs911633485 3084 dbSNP
rs945027422 3087 dbSNP
rs1462596556 3101 dbSNP
rs1326161754 3102 dbSNP
rs1043352400 3103 dbSNP
rs1423732327 3106 dbSNP
rs903615597 3107 dbSNP
rs773599590 3108 dbSNP
rs937743181 3110 dbSNP
rs574491998 3113 dbSNP
rs1197653405 3119 dbSNP
rs151075274 3121 dbSNP
rs541834554 3122 dbSNP
rs114785067 3124 dbSNP
rs1336229046 3130 dbSNP
rs1321043058 3133 dbSNP
rs1310491164 3136 dbSNP
rs1225480304 3140 dbSNP
rs1377785511 3143 dbSNP
rs1308671813 3152 dbSNP
rs764307316 3159 dbSNP
rs1238219495 3161 dbSNP
rs1444812112 3169 dbSNP
rs1286429460 3171 dbSNP
rs1013544010 3178 dbSNP
rs532144185 3188 dbSNP
rs545705287 3205 dbSNP
rs897852103 3206 dbSNP
rs562400775 3207 dbSNP
rs1273980739 3208 dbSNP
rs45560740 3213 dbSNP
rs1380339504 3229 dbSNP
rs550744337 3231 dbSNP
rs1208388124 3235 dbSNP
rs894287307 3237 dbSNP
rs1269102359 3238 dbSNP
rs1438805017 3240 dbSNP
rs185536431 3245 dbSNP
rs952234485 3246 dbSNP
rs117149727 3260 dbSNP
rs1218664380 3265 dbSNP
rs1007602430 3267 dbSNP
rs1238152704 3268 dbSNP
rs1373389102 3269 dbSNP
rs762548113 3274 dbSNP
rs140924102 3280 dbSNP
rs75751656 3284 dbSNP
rs375932003 3288 dbSNP
rs759552160 3289 dbSNP
rs999297911 3293 dbSNP
rs914175634 3297 dbSNP
rs764026056 3301 dbSNP
rs566022263 3305 dbSNP
rs1169341008 3315 dbSNP
rs766046551 3317 dbSNP
rs997033093 3319 dbSNP
rs1028462251 3336 dbSNP
rs924933924 3339 dbSNP
rs937799361 3340 dbSNP
rs539195142 3342 dbSNP
rs753680404 3343 dbSNP
rs559298033 3344 dbSNP
rs1285230276 3346 dbSNP
rs1214473459 3348 dbSNP
rs1294011411 3358 dbSNP
rs1036842435 3360 dbSNP
rs1232761664 3362 dbSNP
rs911669242 3364 dbSNP
rs961812620 3366 dbSNP
rs533130470 3384 dbSNP
rs1340490161 3385 dbSNP
rs920218426 3387 dbSNP
rs1049532770 3394 dbSNP
rs1403757973 3402 dbSNP
rs764990965 3409 dbSNP
rs887779943 3411 dbSNP
rs930564059 3422 dbSNP
rs538531240 3426 dbSNP
rs1172705277 3433 dbSNP
rs545843869 3438 dbSNP
rs1486959943 3439 dbSNP
rs556277859 3446 dbSNP
rs1055688889 3447 dbSNP
rs368998246 3462 dbSNP
rs150201916 3465 dbSNP
rs574354875 3472 dbSNP
rs1256921705 3473 dbSNP
rs1413815403 3473 dbSNP
rs1045563194 3477 dbSNP
rs539970816 3478 dbSNP
rs1194878775 3481 dbSNP
rs758195648 3482 dbSNP
rs903275783 3493 dbSNP
rs1021047216 3502 dbSNP
rs1373353312 3518 dbSNP
rs1461248373 3519 dbSNP
rs779843116 3534 dbSNP
rs966937312 3539 dbSNP
rs145715994 3542 dbSNP
rs979652813 3556 dbSNP
rs1054404689 3557 dbSNP
rs893110603 3559 dbSNP
rs996790946 3560 dbSNP
rs1332981001 3565 dbSNP
rs751129842 3571 dbSNP
rs990999742 3590 dbSNP
rs188016008 3592 dbSNP
rs949085974 3598 dbSNP
rs1394432109 3599 dbSNP
rs1008846320 3608 dbSNP
rs1297976871 3609 dbSNP
rs757574424 3610 dbSNP
rs1240206401 3618 dbSNP
rs918382231 3620 dbSNP
rs931256309 3621 dbSNP
rs1256546741 3629 dbSNP
rs1228077000 3640 dbSNP
rs1048296648 3651 dbSNP
rs576634405 3652 dbSNP
rs962102658 3654 dbSNP
rs374636866 3657 dbSNP
rs1158687716 3658 dbSNP
rs887802797 3660 dbSNP
rs1007579627 3669 dbSNP
rs1310871127 3673 dbSNP
rs192245791 3679 dbSNP
rs541968740 3683 dbSNP
rs140378269 3685 dbSNP
rs1391288968 3699 dbSNP
rs991133233 3703 dbSNP
rs1471828121 3705 dbSNP
rs1382214282 3707 dbSNP
rs1179401678 3711 dbSNP
rs915867875 3719 dbSNP
rs748649036 3721 dbSNP
rs981686478 3727 dbSNP
rs902683745 3728 dbSNP
rs924446896 3738 dbSNP
rs1452575458 3740 dbSNP
rs934755008 3747 dbSNP
rs1289745448 3771 dbSNP
rs868773356 3775 dbSNP
rs1206395960 3776 dbSNP
rs770299485 3778 dbSNP
rs1356534315 3780 dbSNP
rs893203792 3795 dbSNP
rs1287529456 3801 dbSNP
rs1001553161 3803 dbSNP
rs1470762749 3804 dbSNP
rs1448529554 3807 dbSNP
rs531539274 3809 dbSNP
rs544909557 3813 dbSNP
rs1186381316 3814 dbSNP
rs1331504554 3814 dbSNP
rs1032577466 3823 dbSNP
rs1049709411 3825 dbSNP
rs891379186 3829 dbSNP
rs990514057 3835 dbSNP
rs1378644191 3842 dbSNP
rs778066334 3842 dbSNP
rs1193172983 3843 dbSNP
rs1478500712 3850 dbSNP
rs1246463224 3863 dbSNP
rs1197274996 3864 dbSNP
rs1008439701 3883 dbSNP
rs1024611749 3892 dbSNP
rs1264542688 3894 dbSNP
rs750236349 3896 dbSNP
rs542090800 3909 dbSNP
rs897290932 3912 dbSNP
rs972472534 3919 dbSNP
rs1345339679 3941 dbSNP
rs995658748 3947 dbSNP
rs1438660512 3959 dbSNP
rs1357414636 3960 dbSNP
rs918454287 3961 dbSNP
rs1298755063 3965 dbSNP
rs931119150 3983 dbSNP
rs1464556843 3986 dbSNP
rs561148782 3995 dbSNP
rs1290744019 3999 dbSNP
rs561874475 4003 dbSNP
rs375112173 4008 dbSNP
rs991162992 4014 dbSNP
rs1022591424 4016 dbSNP
rs1174652251 4017 dbSNP
rs971739668 4029 dbSNP
rs145563493 4031 dbSNP
rs924511675 4032 dbSNP
rs934535856 4040 dbSNP
rs1211691787 4048 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
     
Conditions HEK293 , NT2
Disease ken;
Location of target site 3'UTR
Original Description (Extracted from the article) ... "miR-9* targets the 3'UTR of CoREST.//Cotransfection of the CoREST 3'UTR reporter plasmid and 5 or 15 nM pre-miR-9* reduced reporter expression compared with controls (F(2 ...

- Packer AN; Xing Y; Harper SQ; Jones L; Davidson BL, 2008, The Journal of neuroscience : the official journal of the Society for Neuroscience.

Article - Packer AN; Xing Y; Harper SQ; Jones L; Davidson BL
- The Journal of neuroscience : the official journal of the Society for Neuroscience, 2008
The transcription factor REST silences neuronal gene expression in non-neuronal cells. In neurons, the protein is sequestered in the cytoplasm in part through binding to huntingtin. Polyglutamine expansions in huntingtin, which causes Huntington's disease (HD), abrogates REST-huntingtin binding. Consequently, REST translocates to the nucleus, occupies RE1 repressor sequences and decreases neuronal gene expression. In this work, we found that levels of several microRNAs (miRNAs) with upstream RE1 sites are decreased in HD patient cortices relative to healthy controls. Interestingly, one of these, the bifunctional brain enriched miR-9/miR-9*, targets two components of the REST complex: miR-9 targets REST and miR-9* targets CoREST. These data provide evidence for a double negative feedback loop between the REST silencing complex and the miRNAs it regulates.
LinkOut: [PMID: 19118166]
Experimental Support 2 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Article - Genovesi LA; Carter KW; Gottardo NG; Giles et al.
- PloS one, 2011
Medulloblastoma (MB) is the most common malignant brain tumor in children and a leading cause of cancer-related mortality and morbidity. Several molecular sub-types of MB have been identified, suggesting they may arise from distinct cells of origin. Data from animal models indicate that some MB sub-types arise from multipotent cerebellar neural stem cells (NSCs). Hence, microRNA (miRNA) expression profiles of primary MB samples were compared to CD133+ NSCs, aiming to identify deregulated miRNAs involved in MB pathogenesis. Expression profiling of 662 miRNAs in primary MB specimens, MB cell lines, and human CD133+ NSCs and CD133- neural progenitor cells was performed by qRT-PCR. Clustering analysis identified two distinct sub-types of MB primary specimens, reminiscent of sub-types obtained from their mRNA profiles. 21 significantly up-regulated and 12 significantly down-regulated miRNAs were identified in MB primary specimens relative to CD133+ NSCs (p<0.01). The majority of up-regulated miRNAs mapped to chromosomal regions 14q32 and 17q. Integration of the predicted targets of deregulated miRNAs with mRNA expression data from the same specimens revealed enrichment of pathways regulating neuronal migration, nervous system development and cell proliferation. Transient over-expression of a down-regulated miRNA, miR-935, resulted in significant down-regulation of three of the seven predicted miR-935 target genes at the mRNA level in a MB cell line, confirming the validity of this approach. This study represents the first integrated analysis of MB miRNA and mRNA expression profiles and is the first to compare MB miRNA expression profiles to those of CD133+ NSCs. We identified several differentially expressed miRNAs that potentially target networks of genes and signaling pathways that may be involved in the transformation of normal NSCs to brain tumor stem cells. Based on this integrative approach, our data provide an important platform for future investigations aimed at characterizing the role of specific miRNAs in MB pathogenesis.
LinkOut: [PMID: 21931624]
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
GSE28260 Renal cortex and medulla 0.784 7.6e-4 0.676 5.6e-3 13 Click to see details
GSE28544 Breast cancer 0.486 8.0e-3 0.511 5.4e-3 24 Click to see details
GSE15076 Monocyte-derived dendritic cells -0.729 1.3e-2 -0.733 1.2e-2 9 Click to see details
GSE17498 Multiple myeloma 0.273 4.4e-2 0.047 3.9e-1 40 Click to see details
GSE38974 Chronic obstructive pulmonary disease -0.274 9.3e-2 -0.258 1.1e-1 25 Click to see details
GSE14794 Lymphoblastoid cells 0.116 1.4e-1 0.105 1.6e-1 90 Click to see details
GSE21849 B cell lymphoma -0.203 1.5e-1 -0.049 4.0e-1 29 Click to see details
GSE38226 Liver fibrosis -0.218 1.7e-1 0.052 4.1e-1 21 Click to see details
GSE17306 Multiple myeloma 0.094 2.6e-1 0.074 3.1e-1 49 Click to see details
GSE35602 Colorectal cancer stromal tissue 0.125 2.8e-1 0.469 9.0e-3 25 Click to see details
GSE21687 Ependynoma primary tumors 0.075 2.8e-1 0.180 7.7e-2 64 Click to see details
GSE19536 Breast cancer -0.055 2.9e-1 -0.025 4.0e-1 100 Click to see details
GSE34608 Pulmonary tuberculosis and sarcoidosis 0.113 3.2e-1 -0.017 4.7e-1 20 Click to see details
GSE19350 CNS germ cell tumors -0.095 3.8e-1 0.077 4.1e-1 12 Click to see details
GSE27834 Pluripotent stem cells -0.058 4.2e-1 -0.121 3.3e-1 16 Click to see details
GSE19783 ER+ ER+ breast cancer 0.049 4.2e-1 0.442 2.6e-2 20 Click to see details
GSE32688 Pancreatic cancer 0.024 4.5e-1 0.167 1.8e-1 32 Click to see details
GSE26953 Aortic valvular endothelial cells -0.026 4.5e-1 0.015 4.7e-1 24 Click to see details
GSE19783 ER- ER- breast cancer 0.012 4.6e-1 0.017 4.4e-1 79 Click to see details
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
CESC 0.999 0.01 1.000 0.5 3 Click to see details
BRCA 0.227 0.04 0.247 0.03 57 Click to see details
HNSC -0.274 0.05 -0.282 0.04 38 Click to see details
LUAD 0.523 0.09 0.381 0.18 8 Click to see details
CHOL 0.648 0.12 0.700 0.09 5 Click to see details
UCEC 0.267 0.14 0.255 0.15 18 Click to see details
LUSC 0.21 0.16 0.108 0.3 25 Click to see details
LIHC -0.173 0.16 -0.166 0.17 35 Click to see details
STAD -0.17 0.2 -0.168 0.2 27 Click to see details
ESCA 0.176 0.31 0.321 0.18 10 Click to see details
KICH 0.105 0.36 0.029 0.46 14 Click to see details
PCPG -0.27 0.41 -0.500 0.33 3 Click to see details
BLCA 0.048 0.43 -0.147 0.29 17 Click to see details
PRAD -0.029 0.43 -0.129 0.21 41 Click to see details
THCA 0.033 0.44 -0.067 0.38 25 Click to see details
KIRP 0.018 0.46 0.136 0.25 27 Click to see details
KIRC -0.004 0.49 -0.068 0.34 40 Click to see details
KIRC -0.004 0.49 -0.068 0.34 40 Click to see details
KIRC -0.004 0.49 -0.068 0.34 40 Click to see details
KIRC -0.004 0.49 -0.068 0.34 40 Click to see details
86 hsa-miR-9-3p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT003911 RCOR1 REST corepressor 1 3 2
MIRT035520 ITGB1 integrin subunit beta 1 1 1
MIRT054491 GNAI1 G protein subunit alpha i1 2 1
MIRT063596 FBXO28 F-box protein 28 2 4
MIRT065157 SLC38A2 solute carrier family 38 member 2 2 4
MIRT296352 PARD6B par-6 family cell polarity regulator beta 2 2
MIRT362144 MTRNR2L6 MT-RNR2-like 6 2 2
MIRT386279 ITPRIPL2 inositol 1,4,5-trisphosphate receptor interacting protein like 2 2 2
MIRT391503 C5ORF51 chromosome 5 open reading frame 51 2 2
MIRT441454 PKD2L2 polycystin 2 like 2, transient receptor potential cation channel 2 2
MIRT441494 TSC22D1 TSC22 domain family member 1 2 2
MIRT441609 ATP13A4 ATPase 13A4 2 2
MIRT441971 RNF41 ring finger protein 41 2 2
MIRT442615 PPP3R1 protein phosphatase 3 regulatory subunit B, alpha 2 2
MIRT442676 G2E3 G2/M-phase specific E3 ubiquitin protein ligase 2 2
MIRT442779 INO80C INO80 complex subunit C 2 2
MIRT443185 NHS NHS actin remodeling regulator 2 4
MIRT443519 P2RX7 purinergic receptor P2X 7 2 2
MIRT444526 EIF2A eukaryotic translation initiation factor 2A 2 2
MIRT448920 CKS1B CDC28 protein kinase regulatory subunit 1B 2 2
MIRT449104 CREBRF CREB3 regulatory factor 2 2
MIRT449333 ACTBL2 actin, beta like 2 2 2
MIRT456857 ZNF460 zinc finger protein 460 2 10
MIRT463797 XPOT exportin for tRNA 2 2
MIRT469378 REST RE1 silencing transcription factor 2 10
MIRT475190 IMPDH1P11 inosine monophosphate dehydrogenase 1 pseudogene 11 2 6
MIRT475942 GXYLT1 glucoside xylosyltransferase 1 2 2
MIRT476714 FRK fyn related Src family tyrosine kinase 2 4
MIRT493522 IGF2 insulin like growth factor 2 2 2
MIRT496868 ASB7 ankyrin repeat and SOCS box containing 7 2 2
MIRT498069 SLC25A12 solute carrier family 25 member 12 2 2
MIRT498303 SDHC succinate dehydrogenase complex subunit C 2 2
MIRT502378 GCC2 GRIP and coiled-coil domain containing 2 2 6
MIRT503010 CAPZA1 capping actin protein of muscle Z-line alpha subunit 1 2 8
MIRT503917 FBXL13 F-box and leucine rich repeat protein 13 2 4
MIRT505283 TTC9 tetratricopeptide repeat domain 9 2 4
MIRT505294 TPD52 tumor protein D52 2 2
MIRT507086 GPR180 G protein-coupled receptor 180 2 4
MIRT511287 KLHL15 kelch like family member 15 2 4
MIRT511713 HIST1H2BG histone cluster 1 H2B family member g 2 4
MIRT511956 ELOVL5 ELOVL fatty acid elongase 5 2 6
MIRT517723 PAGR1 PAXIP1 associated glutamate rich protein 1 2 4
MIRT521061 SLC25A32 solute carrier family 25 member 32 2 6
MIRT528079 NOL9 nucleolar protein 9 2 2
MIRT530725 C20orf196 chromosome 20 open reading frame 196 2 2
MIRT532883 ZNF451 zinc finger protein 451 2 2
MIRT532962 ZNF148 zinc finger protein 148 2 2
MIRT535277 PHOX2B paired like homeobox 2b 2 2
MIRT541046 SLC25A36 solute carrier family 25 member 36 2 2
MIRT542599 YOD1 YOD1 deubiquitinase 2 2
MIRT547395 MKX mohawk homeobox 2 2
MIRT554615 RPS6KA3 ribosomal protein S6 kinase A3 2 2
MIRT557439 GTPBP2 GTP binding protein 2 2 2
MIRT557769 FRS2 fibroblast growth factor receptor substrate 2 2 4
MIRT557835 FNDC3B fibronectin type III domain containing 3B 2 2
MIRT559249 BBX BBX, HMG-box containing 2 4
MIRT561033 ASB6 ankyrin repeat and SOCS box containing 6 2 2
MIRT562080 KLHL11 kelch like family member 11 2 2
MIRT562292 GLO1 glyoxalase I 2 2
MIRT562987 KIAA0408 KIAA0408 2 2
MIRT565464 SRSF6 serine and arginine rich splicing factor 6 2 2
MIRT567908 CRK CRK proto-oncogene, adaptor protein 2 2
MIRT623676 HOXD4 homeobox D4 2 2
MIRT630595 C2CD2 C2 calcium dependent domain containing 2 2 2
MIRT642471 C16orf58 chromosome 16 open reading frame 58 2 2
MIRT644846 PGM2 phosphoglucomutase 2 2 2
MIRT650397 ORMDL2 ORMDL sphingolipid biosynthesis regulator 2 2 2
MIRT651686 VPS13D vacuolar protein sorting 13 homolog D 2 2
MIRT652531 TM9SF3 transmembrane 9 superfamily member 3 2 2
MIRT653246 SORD sorbitol dehydrogenase 2 2
MIRT658596 EPB41L1 erythrocyte membrane protein band 4.1 like 1 2 2
MIRT660377 B4GALT6 beta-1,4-galactosyltransferase 6 2 2
MIRT665758 TMEM43 transmembrane protein 43 2 2
MIRT666953 PKHD1 PKHD1, fibrocystin/polyductin 2 2
MIRT667128 NUDT3 nudix hydrolase 3 2 2
MIRT699791 SEC24A SEC24 homolog A, COPII coat complex component 2 2
MIRT704061 SRCAP Snf2 related CREBBP activator protein 2 2
MIRT714595 HSPA4L heat shock protein family A (Hsp70) member 4 like 2 2
MIRT722695 PCMTD1 protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 1 2 2
MIRT723148 NQO2 N-ribosyldihydronicotinamide:quinone reductase 2 2 2
MIRT731353 FOXO1 forkhead box O1 2 1
MIRT735043 SOX9 SRY-box 9 2 0
MIRT736765 EIF5A2 eukaryotic translation initiation factor 5A2 4 0
MIRT736863 HES1 hes family bHLH transcription factor 1 3 0
MIRT737297 EGFR epidermal growth factor receptor 3 0
MIRT756214 TOP2B DNA topoisomerase II beta 3 1
miRNA-Drug Associations
miRNA Small Melocule FDA CID Detection Method Condition PMID Year Expression Pattern of miRNA
miR-9 Galactose NULL 6036 Quantitative real-time PCR lens 22736950 2012 up-regulated
miR-9 Ethanol NULL 702 Microarray fetal mouse brains 19091803 2009 up-regulated
miR-9 Atorvastatin approved 60823 Quantitative real-time PCR Cardiomyocyte 23860036 2013 down-regualted
miR-9 Ethanol NULL 702 Quantitative real-time PCR Cerebellar Granule Neurons cells 24554719 2014 down-regulated
miR-9 Glucose NULL 5793 Microarray endothelial cells 24394957 2014 up-regulated
miR-9 Iron-sulfates and Aluminum-sulfates NULL NULL Northern blot human neural cells 17629564 2007 up-regulated
miR-9 17beta-estradiol (E2) approved 5757 Microarray MCF-7 breast cancer cells 19528081 2009 down-regulated
miR-9 N-(4-hydroxyphenyl)-retinamide (4HPR) NULL 5288209 Quantitative real-time PCR human retinal pigment epithelial (ARPE-19) cells 20806079 2010 up-regulated
miR-9 Formaldehyde NULL 712 Microarray Human lung epithelial cells (A549) 21147603 2011 down-regulated
miR-9 Arsenic trioxide approved 14888 Quantitative real-time PCR acute promyelocytic leukemia 22072212 2012 up-regulated
miR-9 Sulindac sulfide approved 5352624 Quantitative real-time PCR HCT116 colon tumor cells 22286762 2012 down-regulated
miR-9 1,2,6-Tri-O-galloyl-beta-D-glucopyranose NULL NULL Microarray HepG2 hepatocarcinoma cells. 22506400 2011 down-regulated
miR-9 Bicalutamide approved 2375 Microarray prostate 22674191 2012 down-regulated
miR-9 Goserelin approved 47725 Microarray prostate 22674191 2012 down-regulated
miR-9 Temozolomide approved 5394 Quantitative real-time PCR glioblastoma cells. 22722712 2012 down-regulated
miR-9 All-trans-retinoic acid (ATRA) approved 444795 Northern blot spina bifida rat fetus 17962954 2007 down-regulated
miR-9 Longevinex NULL NULL Quantitative real-time PCR ischemia/reperfusion [I/R] rat model 21203465 2011 down-regulated
miR-9 Longevinex NULL NULL Quantitative real-time PCR normal heart 21203465 2011 up-regulated
miR-9 Resveratrol NULL 445154 Quantitative real-time PCR ischemia/reperfusion [I/R] rat model 21203465 2011 down-regulated
miR-9 Resveratrol NULL 445154 Quantitative real-time PCR normal heart 21203465 2011 up-regulated
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-miR-9-3p Carmustine 2578 NSC409962 approved sensitive Low Glioma tissue and cell line (A172, A1207, LN18, LN229)
hsa-miR-9-3p Oxaliplatin 6857599 NSC266046 approved sensitive High Colorectal Cancer cell line (HT-29, HCT-116)
hsa-miR-9-3p Cisplatin 5460033 NSC119875 approved resistant High Ovarian Cancer tissue
hsa-miR-9-3p Doxorubicin 31703 NSC123127 approved sensitive Low Chronic Myelogenous Leukemia tissue and cell line (K562)
hsa-miR-9-3p Paclitaxel 36314 NSC125973 approved sensitive Low Chronic Myelogenous Leukemia tissue and cell line (K562)
hsa-miR-9-3p Vincristine 5978 approved sensitive Low Chronic Myelogenous Leukemia tissue and cell line (K562)
hsa-miR-9-3p Imatinib 5291 NSC743414 approved resistant High Chronic Myelogenous Leukemia cell line (K562)
hsa-miR-9-3p Sunitinib 5329102 NSC750690 approved resistant High Renal Cell Cancer tissue
hsa-miR-9-3p Dabrafenib 44462760 NSC764134 approved sensitive High Melanoma cell line (A375)
hsa-miR-9-3p Vemurafenib 42611257 NSC761431 approved sensitive High Melanoma cell line (A375)
hsa-miR-9-3p Etoposide 36462 NSC141540 approved resistant Low Leukemia cell line (K562)
hsa-miR-9-3p Imatinib 5291 NSC743414 approved resistant Low Chronic Myelogenous Leukemia cell line (K562)
hsa-miR-9-3p Rituximab resistant High Diffuse Large B-Cell Lymphoma cell line (DB, NU-DHL-1, NU-DUL-1, MC-116, SU-DHL-4, SU-DHL-5, FARAGE, HBL-1, OCI-Ly3, OCI-Ly7, OCI-Ly8, OCI-Ly19, RIVA, SU-DHL-8, U2932)
hsa-miR-9-3p Gefitinib 123631 NSC715055 approved sensitive High Non-Small Cell Lung Cancer cell line (HCC827)
hsa-miR-9-3p Cisplatin 5460033 NSC119875 approved sensitive Low Gastric Cancer cell line (MGC803)
hsa-miR-9-3p Cisplatin 5460033 NSC119875 approved resistant High Hypopharyngeal Cancer cell line (FaDu)
hsa-miR-9-3p Gemcitabine 60750 NSC613327 approved sensitive Low Breast Cancer cell line (MCF-7, HCC1806)
hsa-miR-9-3p Temozolomide 5394 NSC362856 approved sensitive cell line (U251)
hsa-miR-9-3p Tripterygium wilfordii Hook F resistant tissue
hsa-miR-9-3p Vemurafenib 42611257 NSC761431 approved resistant cell line (451Lu)
hsa-miR-9-3p Cisplatin 5460033 NSC119875 approved sensitive cell line
hsa-miR-9-3p Gefitinib 123631 NSC715055 approved resistant cell line (HCC827)
hsa-miR-9-3p Cisplatin 5460033 NSC119875 approved resistant cell line (FaDu)
hsa-miR-9-3p Osimertinib 71496458 NSC779217 approved sensitive cell line (H1975)
hsa-miR-9-3p Cisplatin 5460033 NSC119875 approved sensitive cell line (A2780)
hsa-miR-9-3p Fluorouracil 3385 NSC19893 approved resistant cell line (KM12C) (72 h)
hsa-miR-9-3p Cisplatin 5460033 NSC119875 approved sensitive cell line (RPMI2650)
hsa-miR-9-3p Sunitinib 5329102 NSC750690 approved resistant tissue (CardB)
hsa-miR-9-3p Gemcitabine 60750 NSC613327 approved sensitive cell line (HuH28)
hsa-miR-9-3p Ceritinib 57379345 NSC776422 approved sensitive cell line (H3122)
hsa-miR-9-3p Cisplatin 5460033 NSC119875 approved resistant cell line (OVCAR3)
hsa-miR-9-3p Cisplatin 5460033 NSC119875 approved sensitive cell line (H23)
hsa-miR-9-3p Cisplatin 5460033 NSC119875 approved resistant cell line (A2780)
hsa-miR-9-3p Cisplatin 5460033 NSC119875 approved sensitive cell line (A549)
hsa-miR-9-3p Cisplatin 5460033 NSC119875 approved sensitive cell line (MDAH-2774)

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