pre-miRNA Information | |
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pre-miRNA | mmu-mir-470 |
Genomic Coordinates | chrX: 66813951 - 66814025 |
Synonyms | Mirn470, mmu-mir-470, Mir470 |
Description | Mus musculus miR-470 stem-loop |
Comment | The mature sequence shown here represents the most commonly cloned form from large-scale cloning studies . |
RNA Secondary Structure |
Mature miRNA Information | |
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Mature miRNA | mmu-miR-470-5p |
Sequence | 9| UUCUUGGACUGGCACUGGUGAGU |31 |
Evidence | Experimental |
Experiments | Cloned |
Putative Targets |
Gene Information | |||||||||||||||||||||
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Gene Symbol | Ass1 | ||||||||||||||||||||
Synonyms | AA408052, ASS, Ass-1, fold | ||||||||||||||||||||
Description | argininosuccinate synthetase 1 | ||||||||||||||||||||
Transcript | NM_007494 | ||||||||||||||||||||
Expression | |||||||||||||||||||||
Putative miRNA Targets on Ass1 | |||||||||||||||||||||
3'UTR of Ass1 (miRNA target sites are highlighted) |
>Ass1|NM_007494|3'UTR 1 ACCCTGACAAAGAGGAGCGGGCCTCCCCACTCTGCAGCTCTCCCAGGCTTCAGCATTAATTGTTGTGATAAATTTGTAAT 81 TGTAGCTTGTTCTCCACCACCTGACTGGGGCTGCTGTGTCCCCCCCCGCCCCCCCACAGCCTTTGTTCCCTGGTCCCCTA 161 TAGCCTACAAAAGTGGTCATCCAAGGGAAGGGAGGGTGGCGGGCAGCTGCAGAAAGCATAAAATGACAATTAAAAGAAGT 241 TACATTAGTCTTT Target sites
Provided by authors
Predicted by miRanda
DRVs
SNPs
DRVs & SNPs
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miRNA-target interactions (Predicted by miRanda) |
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Experimental Support 1 for Functional miRNA-Target Interaction | |
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miRNA:Target | ---- |
Validation Method |
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Conditions | (Male Ames dwarf mice) |
Disease | 0.0 |
Location of target site | 3'UTR |
Tools used in this research | miRBase Target Database |
Original Description (Extracted from the article) |
...
"For example
... - Bates DJ; Li N; Liang R; Sarojini H; An J; et al., 2010, Aging cell. |
Article |
- Bates DJ; Li N; Liang R; Sarojini H; An J; et al. - Aging cell, 2010
The Ames dwarf mouse is well known for its remarkable propensity to delay the onset of aging. Although significant advances have been made demonstrating that this aging phenotype results primarily from an endocrine imbalance, the post-transcriptional regulation of gene expression and its impact on longevity remains to be explored. Towards this end, we present the first comprehensive study by microRNA (miRNA) microarray screening to identify dwarf-specific lead miRNAs, and investigate their roles as pivotal molecular regulators directing the long-lived phenotype. Mapping the signature miRNAs to the inversely expressed putative target genes, followed by in situ immunohistochemical staining and in vitro correlation assays, reveals that dwarf mice post-transcriptionally regulate key proteins of intermediate metabolism, most importantly the biosynthetic pathway involving ornithine decarboxylase and spermidine synthase. Functional assays using 3'-untranslated region reporter constructs in co-transfection experiments confirm that miRNA-27a indeed suppresses the expression of both of these proteins, marking them as probable targets of this miRNA in vivo. Moreover, the putative repressed action of this miRNA on ornithine decarboxylase is identified in dwarf mouse liver as early as 2 months of age. Taken together, our results show that among the altered aspects of intermediate metabolism detected in the dwarf mouse liver--glutathione metabolism, the urea cycle and polyamine biosynthesis--miRNA-27a is a key post-transcriptional control. Furthermore, compared to its normal siblings, the dwarf mouse exhibits a head start in regulating these pathways to control their normality, which may ultimately contribute to its extended health-span and longevity.
LinkOut: [PMID: 19878148]
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26 mmu-miR-470-5p Target Genes:
Functional analysis:
ID | Target | Description | Validation methods | |||||||||
Strong evidence | Less strong evidence | |||||||||||
MIRT001002 | Nanog | Nanog homeobox | 4 | 1 | ||||||||
MIRT004344 | Pou5f1 | POU domain, class 5, transcription factor 1 | 4 | 1 | ||||||||
MIRT005701 | Ass1 | argininosuccinate synthetase 1 | 2 | 1 | ||||||||
MIRT579600 | 4930563E22Rik | RIKEN cDNA 4930563E22 gene | 1 | 3 | ||||||||
MIRT579658 | 1810030O07Rik | RIKEN cDNA 1810030O07 gene | 1 | 2 | ||||||||
MIRT587091 | Gldn | gliomedin | 1 | 1 | ||||||||
MIRT591592 | Zbtb44 | zinc finger and BTB domain containing 44 | 1 | 1 | ||||||||
MIRT594490 | Dcp2 | decapping mRNA 2 | 1 | 1 | ||||||||
MIRT596386 | Wipf2 | WAS/WASL interacting protein family, member 2 | 1 | 1 | ||||||||
MIRT596756 | Utp23 | UTP23 small subunit processome component | 1 | 1 | ||||||||
MIRT597051 | Terf2ip | telomeric repeat binding factor 2, interacting protein | 1 | 1 | ||||||||
MIRT598179 | Mrpl19 | mitochondrial ribosomal protein L19 | 1 | 1 | ||||||||
MIRT598583 | Intu | inturned planar cell polarity protein | 1 | 1 | ||||||||
MIRT599191 | Ddx19b | DEAD (Asp-Glu-Ala-Asp) box polypeptide 19b | 1 | 1 | ||||||||
MIRT599360 | Colec12 | collectin sub-family member 12 | 1 | 1 | ||||||||
MIRT599386 | Cln8 | ceroid-lipofuscinosis, neuronal 8 | 1 | 1 | ||||||||
MIRT599752 | Amy2a4 | amylase 2a4 | 1 | 1 | ||||||||
MIRT599756 | Amy2a3 | amylase 2a3 | 1 | 1 | ||||||||
MIRT599760 | Amy2a2 | amylase 2a2 | 1 | 1 | ||||||||
MIRT599869 | Acnat1 | acyl-coenzyme A amino acid N-acyltransferase 1 | 1 | 1 | ||||||||
MIRT600012 | 2900026A02Rik | RIKEN cDNA 2900026A02 gene | 1 | 1 | ||||||||
MIRT601650 | Siglece | sialic acid binding Ig-like lectin E | 1 | 1 | ||||||||
MIRT602197 | Hmmr | hyaluronan mediated motility receptor (RHAMM) | 1 | 1 | ||||||||
MIRT605471 | Slc7a14 | solute carrier family 7 (cationic amino acid transporter, y+ system), member 14 | 1 | 1 | ||||||||
MIRT605570 | Oxsm | 3-oxoacyl-ACP synthase, mitochondrial | 1 | 1 | ||||||||
MIRT732694 | BDNF | brain derived neurotrophic factor | 3 | 0 |
miRNA-Drug Associations | |||||||||||||||||||||||||||||||||||||||||||||
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