pre-miRNA Information | |
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pre-miRNA | hsa-mir-637 |
Genomic Coordinates | chr19: 3961414 - 3961512 |
Synonyms | MIRN637, hsa-mir-637, MIR637 |
Description | Homo sapiens miR-637 stem-loop |
Comment | None |
RNA Secondary Structure | |
Associated Diseases |
Mature miRNA Information | ||||||||||||||||||||||||||||||||||||||||
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Mature miRNA | hsa-miR-637 | |||||||||||||||||||||||||||||||||||||||
Sequence | 61| ACUGGGGGCUUUCGGGCUCUGCGU |84 | |||||||||||||||||||||||||||||||||||||||
Evidence | Experimental | |||||||||||||||||||||||||||||||||||||||
Experiments | SAGE | |||||||||||||||||||||||||||||||||||||||
Expression Profile | DRVs in miRNA |
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SNPs in miRNA |
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Putative Targets |
Gene Information | |||||||||||||||||||||
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Gene Symbol | SP7 | ||||||||||||||||||||
Synonyms | OI11, OI12, OSX, osterix | ||||||||||||||||||||
Description | Sp7 transcription factor | ||||||||||||||||||||
Transcript | NM_001173467 | ||||||||||||||||||||
Other Transcripts | NM_152860 | ||||||||||||||||||||
Expression | |||||||||||||||||||||
Putative miRNA Targets on SP7 | |||||||||||||||||||||
3'UTR of SP7 (miRNA target sites are highlighted) |
>SP7|NM_001173467|3'UTR 1 GCCGGGTGGAAGGTCTCCCACCCCAGGGCTGCCCTGACAGTCTCTCTTGGCTCTCTAGACCACTGCTTGCCAATCACTCT 81 CTTTACCCCATGCATGCCATCCTTCGGGGCTCTCTCCCTCTGTCTCCCTCCTGGCCATTCTGGGCTTGGGTATCTCCTTG 161 CATGCCTCCTCAGCTCACCTTCTCTCTTCACCATGAGACTGGCTTTCCACAAACTCTCATCTCAGGCCCTCCCCTTGTGC 241 CTGATACCTGCACTCCGGCTTCCTAGACTCTGGCCCTGCCACACCAACACACTTTCTATTTGGGCTCCCAACACTATTTC 321 TCCATCTCACTCCTTGACATGTACCCCTTTCTGCTTCTCAAGCTTATTTCCTGCTGTCCCTCAGCCTCCAGGCTTCAGTC 401 TTCCCAACTTCTTACACCATTGCTTTCCATTCTCCAGAACTCTTTTTTCCTTTTTACAAACACAATGATAATGATAATTT 481 ATTGCCCCCTGGTGGCCTCTTCATCAGGGGTATTGGGGTTAGTGACCTGGCCAGAGGGTGCCAAGAGGGGGGCAGACCAG 561 TGGGGATCTGATCCCAAAGATGGGGTGACCCCAGGGTCAGGGAGGCTGCCCCCAGGCCTGTATATTTAACCCCTATGTAC 641 CAGGAGTAATGAATAGTAATAATTCTATTTATGTAAGTTATGATGACGGGTCAGGTAGAGTGAGCTGGGGAGGGAAGTGG 721 ATCCATTTCTGCTAAGGAAATTCTAGTCAAATGCATCTCTGTATAGACAAAATGTTAGTGGAGAAGATCTTGTTAATAGA 801 ATGTCTATCATCAGAATCTCAGTTGATAGGGTTTCTCTTGTAATGAAGTCTCTACAAATTGGGTTAGCTACATCTCTGCT 881 AAACAGTTGATGGGGTATCTCTTGATTAGGGGGATCCCTAATATCCCCAGCCCCAGCCAGAAGCTGTGAAACCTCAAGTC 961 CTATGGAGGGGAGAAGGACTGGAATGTACCCCATCTCCCTTGACTGCAGAGCAGGTTCCTCCACTGCCCCACCCCTTAGA 1041 CACCATGACCCCATCAGGTTAATCCCCTGTTGCCATGGTTATGGAGAGCTTGCAGCTGCCATCTTAGATGTGCTCTTTGG 1121 GGAAGCCCATCTAACAGGAGGACATTGGTTTGGGGGTGCACCTCCTGAAGAATGGGTGGGGAAGGCTTTCTCTAGGATCA 1201 GATTCAAATAAGTATGTATTGAGTGCCTACTCTGTGCAAGGCACTATGCTAGATCTGGTGCCTAGAAGCCCTGAGAAAGA 1281 ACTTAAAGAGCTAGGAGGACAGAGGCCCCCAAGCTGATCTGGTGGTGCATCCACGCACCCCCACCCTGGGACTTTGGATG 1361 CTCCCATCTCCACCTCCAGTGACTTTTAAAGCCGCTTCGTGCCTTTCCTGTAACGTTGGATCCTCCTTTTCTGTCCCCTG 1441 CTGTCTCAAGGCCCCAAGTTAAAGGGTTAAAGCCGCTGGAGCTTGGGGAGAGAACATTGTGGAATGGAAGGGATCATGCC 1521 CTTTGTGGAGTCTTTTTTTTTTAATTTAATAAATAAAAGTTGGATTTGAAAAAAAAAAAAAAAAAAAAAAAA Target sites
Provided by authors
Predicted by miRanda
DRVs
SNPs
DRVs & SNPs
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miRNA-target interactions (Predicted by miRanda) |
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DRVs in gene 3'UTRs | |||||||||||||||||||||
SNPs in gene 3'UTRs |
Experimental Support 1 for Functional miRNA-Target Interaction | |
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miRNA:Target | ---- |
Validation Method |
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Conditions | hMSC |
Disease | osteoporosis |
Location of target site | 3'UTR |
Tools used in this research | miRanda , TargetScan |
Original Description (Extracted from the article) |
...
Osterix was a direct target of miR-637 in hMSCs
... - Zhang JF; Fu WM; He ML; Wang H; Wang WM; Yu et al., 2011, Molecular biology of the cell. |
Article |
- Zhang JF; Fu WM; He ML; Wang H; Wang WM; Yu et al. - Molecular biology of the cell, 2011
Bone development is dynamically regulated by homeostasis, in which a balance between adipocytes and osteoblasts is maintained. Disruption of this differentiation balance leads to various bone-related metabolic diseases, including osteoporosis. In the present study, a primate-specific microRNA (miR-637) was found to be involved in the differentiation of human mesenchymal stem cells (hMSCs). Our preliminary data indicated that miR-637 suppressed the growth of hMSCs and induced S-phase arrest. Expression of miR-637 was increased during adipocyte differentiation (AD), whereas it was decreased during osteoblast differentiation (OS), which suggests miR-637 could act as a mediator of adipoosteogenic differentiation. Osterix (Osx), a significant transcription factor of osteoblasts, was shown to be a direct target of miR-637, which significantly enhanced AD and suppressed OS in hMSCs through direct suppression of Osx expression. Furthermore, miR-637 also significantly enhanced de novo adipogenesis in nude mice. In conclusion, our data indicated that the expression of miR-637 was indispensable for maintaining the balance of adipocytes and osteoblasts. Disruption of miR-637 expression patterns leads to irreversible damage to the balance of differentiation in bone marrow.
LinkOut: [PMID: 21880893]
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MiRNA-Target Expression Profile | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
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MiRNA-Target Expression Profile (TCGA) | |||||||
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69 hsa-miR-637 Target Genes:
Functional analysis:
ID | Target | Description | Validation methods | |||||||||
Strong evidence | Less strong evidence | |||||||||||
MIRT006147 | SP7 | Sp7 transcription factor | 3 | 1 | ||||||||
MIRT054906 | COL4A1 | collagen type IV alpha 1 chain | 1 | 1 | ||||||||
MIRT159142 | NRBP1 | nuclear receptor binding protein 1 | 2 | 2 | ||||||||
MIRT358526 | HNRNPAB | heterogeneous nuclear ribonucleoprotein A/B | 2 | 2 | ||||||||
MIRT441490 | NCEH1 | neutral cholesterol ester hydrolase 1 | 2 | 2 | ||||||||
MIRT443472 | ACPP | acid phosphatase, prostate | 2 | 2 | ||||||||
MIRT464631 | UBE4A | ubiquitination factor E4A | 2 | 2 | ||||||||
MIRT465259 | TRIM44 | tripartite motif containing 44 | 2 | 2 | ||||||||
MIRT473975 | LRRC58 | leucine rich repeat containing 58 | 2 | 2 | ||||||||
MIRT475168 | IP6K1 | inositol hexakisphosphate kinase 1 | 2 | 2 | ||||||||
MIRT477631 | EFNA1 | ephrin A1 | 2 | 2 | ||||||||
MIRT480100 | CALR | calreticulin | 2 | 2 | ||||||||
MIRT483504 | STMN3 | stathmin 3 | 2 | 4 | ||||||||
MIRT483735 | THSD4 | thrombospondin type 1 domain containing 4 | 2 | 2 | ||||||||
MIRT483847 | UNC5B | unc-5 netrin receptor B | 2 | 2 | ||||||||
MIRT485973 | RTBDN | retbindin | 2 | 2 | ||||||||
MIRT486616 | METTL6 | methyltransferase like 6 | 2 | 2 | ||||||||
MIRT487847 | CLSTN1 | calsyntenin 1 | 2 | 4 | ||||||||
MIRT488675 | WWP2 | WW domain containing E3 ubiquitin protein ligase 2 | 2 | 4 | ||||||||
MIRT489046 | PRPF4B | pre-mRNA processing factor 4B | 2 | 2 | ||||||||
MIRT490612 | SLC47A1 | solute carrier family 47 member 1 | 2 | 4 | ||||||||
MIRT490990 | USP22 | ubiquitin specific peptidase 22 | 2 | 2 | ||||||||
MIRT492559 | PRX | periaxin | 2 | 2 | ||||||||
MIRT494667 | ARL8A | ADP ribosylation factor like GTPase 8A | 2 | 2 | ||||||||
MIRT495880 | DPY19L1 | dpy-19 like C-mannosyltransferase 1 | 2 | 2 | ||||||||
MIRT496778 | ADAMTS14 | ADAM metallopeptidase with thrombospondin type 1 motif 14 | 2 | 2 | ||||||||
MIRT499742 | USH1G | USH1 protein network component sans | 2 | 4 | ||||||||
MIRT500371 | ZNF385A | zinc finger protein 385A | 2 | 2 | ||||||||
MIRT503257 | KIF18B | kinesin family member 18B | 2 | 2 | ||||||||
MIRT504511 | PPP1R9B | protein phosphatase 1 regulatory subunit 9B | 2 | 2 | ||||||||
MIRT511940 | FAM127B | retrotransposon Gag like 8A | 2 | 2 | ||||||||
MIRT514606 | NDUFA12 | NADH:ubiquinone oxidoreductase subunit A12 | 2 | 4 | ||||||||
MIRT527187 | CLASP1 | cytoplasmic linker associated protein 1 | 2 | 2 | ||||||||
MIRT532494 | HOXA13 | homeobox A13 | 2 | 2 | ||||||||
MIRT533504 | TRIM71 | tripartite motif containing 71 | 2 | 2 | ||||||||
MIRT539171 | AR | androgen receptor | 2 | 2 | ||||||||
MIRT542735 | RBFOX2 | RNA binding protein, fox-1 homolog 2 | 2 | 2 | ||||||||
MIRT544647 | PHF8 | PHD finger protein 8 | 2 | 4 | ||||||||
MIRT546232 | TNRC18P2 | trinucleotide repeat containing 18 pseudogene 2 | 2 | 2 | ||||||||
MIRT548372 | ENTPD5 | ectonucleoside triphosphate diphosphohydrolase 5 | 2 | 4 | ||||||||
MIRT555913 | ORMDL3 | ORMDL sphingolipid biosynthesis regulator 3 | 2 | 2 | ||||||||
MIRT565381 | TGOLN2 | trans-golgi network protein 2 | 2 | 2 | ||||||||
MIRT568954 | RUNX3 | runt related transcription factor 3 | 2 | 2 | ||||||||
MIRT570205 | RAP1GAP2 | RAP1 GTPase activating protein 2 | 2 | 2 | ||||||||
MIRT573599 | CERS1 | ceramide synthase 1 | 2 | 2 | ||||||||
MIRT615364 | CCNF | cyclin F | 2 | 2 | ||||||||
MIRT616102 | HOXB5 | homeobox B5 | 2 | 2 | ||||||||
MIRT619127 | CD40LG | CD40 ligand | 2 | 2 | ||||||||
MIRT634968 | C8orf17 | chromosome 8 open reading frame 17 | 2 | 2 | ||||||||
MIRT646665 | FNBP1 | formin binding protein 1 | 2 | 2 | ||||||||
MIRT649633 | RASA4 | RAS p21 protein activator 4 | 2 | 2 | ||||||||
MIRT658443 | FAM167B | family with sequence similarity 167 member B | 2 | 2 | ||||||||
MIRT660237 | BMP7 | bone morphogenetic protein 7 | 2 | 2 | ||||||||
MIRT669467 | ATL3 | atlastin GTPase 3 | 2 | 2 | ||||||||
MIRT670557 | SHISA2 | shisa family member 2 | 2 | 2 | ||||||||
MIRT671035 | PCDHB2 | protocadherin beta 2 | 2 | 2 | ||||||||
MIRT684255 | TBXA2R | thromboxane A2 receptor | 2 | 2 | ||||||||
MIRT688619 | CYBRD1 | cytochrome b reductase 1 | 3 | 2 | ||||||||
MIRT694346 | CHST6 | carbohydrate sulfotransferase 6 | 2 | 2 | ||||||||
MIRT695516 | ALPI | alkaline phosphatase, intestinal | 2 | 2 | ||||||||
MIRT697512 | ZBTB7A | zinc finger and BTB domain containing 7A | 2 | 2 | ||||||||
MIRT700133 | RNF144B | ring finger protein 144B | 2 | 2 | ||||||||
MIRT711667 | TRMT5 | tRNA methyltransferase 5 | 2 | 2 | ||||||||
MIRT712156 | TAOK1 | TAO kinase 1 | 2 | 2 | ||||||||
MIRT712463 | KCNC3 | potassium voltage-gated channel subfamily C member 3 | 2 | 2 | ||||||||
MIRT720759 | FAM193A | family with sequence similarity 193 member A | 2 | 2 | ||||||||
MIRT731198 | AKT1 | AKT serine/threonine kinase 1 | 2 | 1 | ||||||||
MIRT755463 | PACS2 | phosphofurin acidic cluster sorting protein 2 | 1 | 1 | ||||||||
MIRT755522 | FOXM1 | forkhead box M1 | 3 | 1 |
miRNA-Drug Resistance Associations | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
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