pre-miRNA Information | |
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pre-miRNA | mmu-mir-494 |
Genomic Coordinates | chr12: 109715318 - 109715402 |
Synonyms | Mirn494, mmu-mir-494, Mir494 |
Description | Mus musculus miR-494 stem-loop |
Comment | The mature sequence shown here represents the most commonly cloned form from large-scale cloning studies . |
RNA Secondary Structure |
Mature miRNA Information | |
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Mature miRNA | mmu-miR-494-3p |
Sequence | 50| UGAAACAUACACGGGAAACCUC |71 |
Evidence | Experimental |
Experiments | Cloned |
Putative Targets |
Gene Information | |
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Gene Symbol | Pten |
Experimental Support 1 for Functional miRNA-Target Interaction | |||||||
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miRNA:Target | ---- | ||||||
Validation Method |
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Conditions | rat cardiomyocytes | ||||||
Disease | MIMAT0003182 | ||||||
Location of target site | 3'UTR | ||||||
Tools used in this research | TargetScan | ||||||
Original Description (Extracted from the article) |
...
"3 proapoptotic proteins (PTEN
... - Wang X; Zhang X; Ren XP; Chen J; Liu H; et al., 2010, Circulation. |
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miRNA-target interactions (Provided by authors) |
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Article |
- Wang X; Zhang X; Ren XP; Chen J; Liu H; et al. - Circulation, 2010
BACKGROUND: MicroRNAs (miRs) participate in many cardiac pathophysiological processes, including ischemia/reperfusion (I/R)-induced cardiac injury. Recently, we and others observed that miR-494 was downregulated in murine I/R-injured and human infarcted hearts. However, the functional consequence of miR-494 in response to I/R remains unknown. METHODS AND RESULTS: We generated a mouse model with cardiac-specific overexpression of miR-494. Transgenic hearts and wild-type hearts from multiple lines were subjected to global no-flow I/R with the Langendorff system. Transgenic hearts exhibited improved recovery of contractile performance over the reperfusion period. This improvement was accompanied by remarkable decreases in both lactate dehydrogenase release and the extent of apoptosis in transgenic hearts compared with wild-type hearts. In addition, myocardial infarction size was significantly reduced in transgenic hearts on I/R in vivo compared with wild-type hearts. Similarly, short-term overexpression of miR-494 in cultured adult cardiomyocytes demonstrated an inhibition of caspase-3 activity and reduced cell death on simulated I/R. In vivo treatment with antisense oligonucleotide miR-494 increased I/R-triggered cardiac injury relative to the administration of mutant antisense oligonucleotide miR-494 and saline controls. We further identified that 3 proapoptotic proteins (PTEN, ROCK1, and CaMKIIdelta) and 2 antiapoptotic proteins (FGFR2 and LIF) were authentic targets for miR-494. Importantly, the Akt-mitochondrial signaling pathway was activated in miR-494-overexpressing myocytes. CONCLUSIONS: Our findings suggest that although miR-494 targets both proapoptotic and antiapoptotic proteins, the ultimate consequence is activation of the Akt pathway, leading to cardioprotective effects against I/R-induced injury. Thus, miR-494 may constitute a new therapeutic agent for the treatment of ischemic heart disease.
LinkOut: [PMID: 20837890]
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Experimental Support 2 for Functional miRNA-Target Interaction | |||||||
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miRNA:Target | ---- | ||||||
Validation Method |
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miRNA-target interactions (Provided by authors) |
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Article |
- Gu S; Xie R; Liu X; Shou J; Gu W; Che X - International journal of molecular sciences, 2017
Recent evidence has suggested that long non-coding RNAs (lncRNAs) may play a significant role in the pathogenesis of several neurological diseases, including spinal cord injury (SCI). However, little is known about the role of lncRNAs in SCI. The aim of the present study was to evaluate the potential functions of lncRNAs in SCI and to identify the underlying mechanisms of action. We firstly analyzed Gene Expression Omnibus (GEO) datasets to investigate aberrantly-expressed lncRNAs which might be involved in the pathogenesis of SCI. The long non-coding RNA X-inactive specific transcript (XIST) was found to be one of the most significantly upregulated lncRNAs in the GEO dataset analysis, and is associated with apoptosis. We, therefore, selected this as a candidate lncRNA and investigated its function. We found that knockdown of lncRNA-XIST by Lv-shRNA had a prominent protective effect on SCI recovery by suppressing apoptosis through reactivation of the PI3K/AKT signaling pathway in rat spinal cord tissue. In particular, our results suggested that lncRNA-XIST may act as a competitive endogenous RNA, effectively becoming a sink for miR-494, leading to derepression of its target gene, phosphatase and tensin homolog deleted on chromosome ten (PTEN). In addition, an inverse relationship between lncRNA-XIST and miR-494 was observed in spinal cord tissues of SCI rats. Further study demonstrated that antagomiR-494 could reverse the protective effects of lncRNA-XIST knockdown on SCI rats through blocking the PTEN/PI3K/AKT signaling pathway. These results suggested that lncRNA-XIST knockdown may play an important role in limiting neuronal apoptosis in rats following SCI, and that the observed protective effects of lncRNA-XIST knockdown might have been mediated by its regulation on the phosphorylation of AKT by competitively binding miR-494. These findings have revealed, for the first time, the importance of the XIST/miR-494/PTEN/AKT signaling axis in the pathogenesis of SCI and suggest that lncRNA-XIST may be a promising molecular target for SCI therapy.
LinkOut: [PMID: 28368292]
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42 mmu-miR-494-3p Target Genes:
Functional analysis:
ID | Target | Description | Validation methods | |||||||||
Strong evidence | Less strong evidence | |||||||||||
MIRT005687 | Hsf2 | heat shock factor 2 | 1 | 1 | ||||||||
MIRT006622 | Pten | phosphatase and tensin homolog | 1 | 1 | ||||||||
MIRT006623 | Rock1 | Rho-associated coiled-coil containing protein kinase 1 | 1 | 1 | ||||||||
MIRT006624 | Camk2b | calcium/calmodulin-dependent protein kinase II beta | 1 | 1 | ||||||||
MIRT006625 | Fgfr2 | fibroblast growth factor receptor 2 | 1 | 1 | ||||||||
MIRT006626 | Lif | LIF, interleukin 6 family cytokine | 1 | 1 | ||||||||
MIRT578347 | Lsm12 | LSM12 homolog | 1 | 2 | ||||||||
MIRT578906 | Ephx3 | epoxide hydrolase 3 | 1 | 3 | ||||||||
MIRT579711 | Zhx2 | zinc fingers and homeoboxes 2 | 1 | 1 | ||||||||
MIRT580333 | Tnfaip1 | tumor necrosis factor, alpha-induced protein 1 (endothelial) | 1 | 1 | ||||||||
MIRT582377 | Msrb3 | methionine sulfoxide reductase B3 | 1 | 2 | ||||||||
MIRT582618 | Lrch1 | leucine-rich repeats and calponin homology (CH) domain containing 1 | 1 | 1 | ||||||||
MIRT583235 | Gopc | golgi associated PDZ and coiled-coil motif containing | 1 | 1 | ||||||||
MIRT583267 | Gmeb1 | glucocorticoid modulatory element binding protein 1 | 1 | 3 | ||||||||
MIRT583415 | Fyttd1 | forty-two-three domain containing 1 | 1 | 1 | ||||||||
MIRT583463 | Foxk1 | forkhead box K1 | 1 | 1 | ||||||||
MIRT583788 | Elovl5 | ELOVL family member 5, elongation of long chain fatty acids (yeast) | 1 | 1 | ||||||||
MIRT583876 | Dusp7 | dual specificity phosphatase 7 | 1 | 1 | ||||||||
MIRT584114 | Csmd1 | CUB and Sushi multiple domains 1 | 1 | 3 | ||||||||
MIRT584936 | Ado | 2-aminoethanethiol (cysteamine) dioxygenase | 1 | 1 | ||||||||
MIRT585324 | Zdbf2 | zinc finger, DBF-type containing 2 | 1 | 1 | ||||||||
MIRT585542 | Tpte | transmembrane phosphatase with tensin homology | 1 | 1 | ||||||||
MIRT586337 | Pex13 | peroxisomal biogenesis factor 13 | 1 | 2 | ||||||||
MIRT587029 | Gmip | Gem-interacting protein | 1 | 2 | ||||||||
MIRT588763 | Stxbp5 | syntaxin binding protein 5 (tomosyn) | 1 | 2 | ||||||||
MIRT589348 | Ostf1 | osteoclast stimulating factor 1 | 1 | 1 | ||||||||
MIRT589540 | Mkrn3 | makorin, ring finger protein, 3 | 1 | 1 | ||||||||
MIRT590075 | Faf1 | Fas-associated factor 1 | 1 | 1 | ||||||||
MIRT590633 | Arl5a | ADP-ribosylation factor-like 5A | 1 | 1 | ||||||||
MIRT592898 | Otx1 | orthodenticle homeobox 1 | 1 | 2 | ||||||||
MIRT595129 | Magee2 | melanoma antigen, family E, 2 | 1 | 1 | ||||||||
MIRT595134 | Lrrc4c | leucine rich repeat containing 4C | 1 | 1 | ||||||||
MIRT595443 | 9030617O03Rik | D-glutamate cyclase | 1 | 1 | ||||||||
MIRT595554 | Ubr3 | ubiquitin protein ligase E3 component n-recognin 3 | 1 | 1 | ||||||||
MIRT595634 | Atrn | attractin | 1 | 1 | ||||||||
MIRT595916 | Syne2 | spectrin repeat containing, nuclear envelope 2 | 1 | 1 | ||||||||
MIRT597960 | Olig3 | oligodendrocyte transcription factor 3 | 1 | 1 | ||||||||
MIRT604095 | Dpm1 | dolichol-phosphate (beta-D) mannosyltransferase 1 | 1 | 1 | ||||||||
MIRT605674 | Itsn1 | intersectin 1 (SH3 domain protein 1A) | 1 | 1 | ||||||||
MIRT731455 | Fgfr2 | fibroblast growth factor receptor 2 | 4 | 1 | ||||||||
MIRT731456 | Rock1 | Rho-associated coiled-coil containing protein kinase 1 | 4 | 1 | ||||||||
MIRT736998 | Rnf41 | ring finger protein 41 | 3 | 0 |
miRNA-Drug Associations | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
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miRNA-Drug Resistance Associations | ||||||||||||||||||||
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