pre-miRNA Information | |
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pre-miRNA | mmu-mir-494 |
Genomic Coordinates | chr12: 109715318 - 109715402 |
Synonyms | Mirn494, mmu-mir-494, Mir494 |
Description | Mus musculus miR-494 stem-loop |
Comment | The mature sequence shown here represents the most commonly cloned form from large-scale cloning studies . |
RNA Secondary Structure |
Mature miRNA Information | |
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Mature miRNA | mmu-miR-494-3p |
Sequence | 50| UGAAACAUACACGGGAAACCUC |71 |
Evidence | Experimental |
Experiments | Cloned |
Putative Targets |
Gene Information | |||||||||||||||||||||
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Gene Symbol | Fgfr2 | ||||||||||||||||||||
Synonyms | - | ||||||||||||||||||||
Description | fibroblast growth factor receptor 2 | ||||||||||||||||||||
Transcript | NM_001109892 | ||||||||||||||||||||
Other Transcripts | NM_001109893 , NM_001109894 , NM_001109895 , NM_001109896 , NM_012712 | ||||||||||||||||||||
Expression | |||||||||||||||||||||
Putative miRNA Targets on Fgfr2 | |||||||||||||||||||||
3'UTR of Fgfr2 (miRNA target sites are highlighted) |
>Fgfr2|NM_001109892|3'UTR 1 GCGGGTGTGTCTTCCTGTCCCCAAACAGGACAGCACCAGGAACCTACTTACACTGAGCAGAGAGGCTGTGCCCCCAAAGC 81 GTGTGGCATGCCTCCACATGTATATATGGATCAGAGGAGTAAATAGTGGGAAGAGTATTTGTCACGTGTGTGAAGATTTA 161 TACAGTTGGAAACATGTTACTTTCCCAGGAAAGGAAGACTGTTTCCTGATAAGTGGACAGCCGCAAGCCACCGCCACCCT 241 CTCTGACCTACCATGTATGCTGGCTGTGCCCCAGTTGGACTCAAGGCAGACCGCTGTTCTGCCTTCCTTGTTAATTTTGT 321 AATAATTGGAGAAGATATATGTCAGCACATACTTACAGAGCACAAATGCAGTATATAGGTGCTGGATGTATGTAAATATA 401 TTCAAATTATGTATAAATATATATTATATATTTACAAGGAATTATTTTTTGTATTGATCTTAAATGGATGTCCTGATGCA 481 CCTAGAAAATTGGTCTCTCCATTTTTTTTAAATAGATATTTGCTAAATGCTGTTCTTAGAATTTCTTAATTTTCACCGAG 561 CAGAGGTGGGAAAATACTTTTGCTTTCAGGGAAAATGGTGTCACATTAATTTATTAATGAATTGGTAATATACGAAACAA 641 TTAATCATCTATAGTTTGTTTTTTTTTTGTAATTTAAGTGGCATTTCTATGCAGACAGCACAGAGGACTAGTTAATCTAT 721 TGCTTGGACTTAACTGGTTATTGGATCCTTTGAGAAGAGAAATATTTACGATATATGACTAATTTGGGGGGAAATGATGT 801 CTTGATTTATTTGTGTTTCAACTCTGCTGTCCGATGATTATGTCTAAACACCTCAATGCCCACCTTTCAAGAAACCTTTT 881 AAACTCTGTCACCCCAGTGTAATAATTAACCAGACTTCCCATGACAAATGGTACCAGAGTCCTCATCCCAAGATGCCTTA 961 ATCCTCTTCTCTGGAGAACAGACTCCCATCGGAGACGGCAGGGTGGGTCTTGTCTGGCAGCTGGCCTTCTGCCTGAGTTA 1041 CACACCCGTCACATTCGCCTTGCTCCCTCTCCGTGAGTTTTGATAACAGCTTCAGATTCTTCAGCATCAAAAACTCTTTG 1121 GGGACTCTCCATCCTCTCGGAGAATAGTGAAAGCCCAGGGTTATTCTGTCGAGAGTTTGGGACCTCCTTCCATCTTCTGC 1201 AGGGTTTGCTTCTGGCTTCCACCCACTTCTGACAAGACCTCTCCTCACTAAAAGATCTGGCCCGAGAGCTACACCCGACA 1281 AGAGAACGCTTACCATTGATTTCCGTGTTCAAGTCTTGTGCTTTGCTTTGGACACGCCCACTCACCTTGCTACCGTCATG 1361 TGACAGGAGTGCAGACTACACTGATTTTATGTGTTTTGAAATTGGAGAAAGTATTTAATAAAACCTGTTAATTTTTATAC 1441 TGACAATAAAAATGTTTCTACAGATATTAATGTTAACGAGACAAAAATAAATGTCGCGCAGCTTATTTTTTTAAAAAAAA 1521 AAAAAAAAAAAAAAAAAAA Target sites
Provided by authors
Predicted by miRanda
DRVs
SNPs
DRVs & SNPs
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miRNA-target interactions (Predicted by miRanda) |
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Experimental Support 1 for Functional miRNA-Target Interaction | |||||||
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miRNA:Target | ---- | ||||||
Validation Method |
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Conditions | rat cardiomyocytes | ||||||
Disease | MIMAT0003182 | ||||||
Location of target site | 3'UTR | ||||||
Tools used in this research | TargetScan | ||||||
Original Description (Extracted from the article) |
...
"3 proapoptotic proteins (PTEN
... - Wang X; Zhang X; Ren XP; Chen J; Liu H; et al., 2010, Circulation. |
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miRNA-target interactions (Provided by authors) |
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Article |
- Wang X; Zhang X; Ren XP; Chen J; Liu H; et al. - Circulation, 2010
BACKGROUND: MicroRNAs (miRs) participate in many cardiac pathophysiological processes, including ischemia/reperfusion (I/R)-induced cardiac injury. Recently, we and others observed that miR-494 was downregulated in murine I/R-injured and human infarcted hearts. However, the functional consequence of miR-494 in response to I/R remains unknown. METHODS AND RESULTS: We generated a mouse model with cardiac-specific overexpression of miR-494. Transgenic hearts and wild-type hearts from multiple lines were subjected to global no-flow I/R with the Langendorff system. Transgenic hearts exhibited improved recovery of contractile performance over the reperfusion period. This improvement was accompanied by remarkable decreases in both lactate dehydrogenase release and the extent of apoptosis in transgenic hearts compared with wild-type hearts. In addition, myocardial infarction size was significantly reduced in transgenic hearts on I/R in vivo compared with wild-type hearts. Similarly, short-term overexpression of miR-494 in cultured adult cardiomyocytes demonstrated an inhibition of caspase-3 activity and reduced cell death on simulated I/R. In vivo treatment with antisense oligonucleotide miR-494 increased I/R-triggered cardiac injury relative to the administration of mutant antisense oligonucleotide miR-494 and saline controls. We further identified that 3 proapoptotic proteins (PTEN, ROCK1, and CaMKIIdelta) and 2 antiapoptotic proteins (FGFR2 and LIF) were authentic targets for miR-494. Importantly, the Akt-mitochondrial signaling pathway was activated in miR-494-overexpressing myocytes. CONCLUSIONS: Our findings suggest that although miR-494 targets both proapoptotic and antiapoptotic proteins, the ultimate consequence is activation of the Akt pathway, leading to cardioprotective effects against I/R-induced injury. Thus, miR-494 may constitute a new therapeutic agent for the treatment of ischemic heart disease.
LinkOut: [PMID: 20837890]
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42 mmu-miR-494-3p Target Genes:
Functional analysis:
ID | Target | Description | Validation methods | |||||||||
Strong evidence | Less strong evidence | |||||||||||
MIRT005687 | Hsf2 | heat shock factor 2 | 1 | 1 | ||||||||
MIRT006622 | Pten | phosphatase and tensin homolog | 1 | 1 | ||||||||
MIRT006623 | Rock1 | Rho-associated coiled-coil containing protein kinase 1 | 1 | 1 | ||||||||
MIRT006624 | Camk2b | calcium/calmodulin-dependent protein kinase II beta | 1 | 1 | ||||||||
MIRT006625 | Fgfr2 | fibroblast growth factor receptor 2 | 1 | 1 | ||||||||
MIRT006626 | Lif | LIF, interleukin 6 family cytokine | 1 | 1 | ||||||||
MIRT578347 | Lsm12 | LSM12 homolog | 1 | 2 | ||||||||
MIRT578906 | Ephx3 | epoxide hydrolase 3 | 1 | 3 | ||||||||
MIRT579711 | Zhx2 | zinc fingers and homeoboxes 2 | 1 | 1 | ||||||||
MIRT580333 | Tnfaip1 | tumor necrosis factor, alpha-induced protein 1 (endothelial) | 1 | 1 | ||||||||
MIRT582377 | Msrb3 | methionine sulfoxide reductase B3 | 1 | 2 | ||||||||
MIRT582618 | Lrch1 | leucine-rich repeats and calponin homology (CH) domain containing 1 | 1 | 1 | ||||||||
MIRT583235 | Gopc | golgi associated PDZ and coiled-coil motif containing | 1 | 1 | ||||||||
MIRT583267 | Gmeb1 | glucocorticoid modulatory element binding protein 1 | 1 | 3 | ||||||||
MIRT583415 | Fyttd1 | forty-two-three domain containing 1 | 1 | 1 | ||||||||
MIRT583463 | Foxk1 | forkhead box K1 | 1 | 1 | ||||||||
MIRT583788 | Elovl5 | ELOVL family member 5, elongation of long chain fatty acids (yeast) | 1 | 1 | ||||||||
MIRT583876 | Dusp7 | dual specificity phosphatase 7 | 1 | 1 | ||||||||
MIRT584114 | Csmd1 | CUB and Sushi multiple domains 1 | 1 | 3 | ||||||||
MIRT584936 | Ado | 2-aminoethanethiol (cysteamine) dioxygenase | 1 | 1 | ||||||||
MIRT585324 | Zdbf2 | zinc finger, DBF-type containing 2 | 1 | 1 | ||||||||
MIRT585542 | Tpte | transmembrane phosphatase with tensin homology | 1 | 1 | ||||||||
MIRT586337 | Pex13 | peroxisomal biogenesis factor 13 | 1 | 2 | ||||||||
MIRT587029 | Gmip | Gem-interacting protein | 1 | 2 | ||||||||
MIRT588763 | Stxbp5 | syntaxin binding protein 5 (tomosyn) | 1 | 2 | ||||||||
MIRT589348 | Ostf1 | osteoclast stimulating factor 1 | 1 | 1 | ||||||||
MIRT589540 | Mkrn3 | makorin, ring finger protein, 3 | 1 | 1 | ||||||||
MIRT590075 | Faf1 | Fas-associated factor 1 | 1 | 1 | ||||||||
MIRT590633 | Arl5a | ADP-ribosylation factor-like 5A | 1 | 1 | ||||||||
MIRT592898 | Otx1 | orthodenticle homeobox 1 | 1 | 2 | ||||||||
MIRT595129 | Magee2 | melanoma antigen, family E, 2 | 1 | 1 | ||||||||
MIRT595134 | Lrrc4c | leucine rich repeat containing 4C | 1 | 1 | ||||||||
MIRT595443 | 9030617O03Rik | D-glutamate cyclase | 1 | 1 | ||||||||
MIRT595554 | Ubr3 | ubiquitin protein ligase E3 component n-recognin 3 | 1 | 1 | ||||||||
MIRT595634 | Atrn | attractin | 1 | 1 | ||||||||
MIRT595916 | Syne2 | spectrin repeat containing, nuclear envelope 2 | 1 | 1 | ||||||||
MIRT597960 | Olig3 | oligodendrocyte transcription factor 3 | 1 | 1 | ||||||||
MIRT604095 | Dpm1 | dolichol-phosphate (beta-D) mannosyltransferase 1 | 1 | 1 | ||||||||
MIRT605674 | Itsn1 | intersectin 1 (SH3 domain protein 1A) | 1 | 1 | ||||||||
MIRT731455 | Fgfr2 | fibroblast growth factor receptor 2 | 4 | 1 | ||||||||
MIRT731456 | Rock1 | Rho-associated coiled-coil containing protein kinase 1 | 4 | 1 | ||||||||
MIRT736998 | Rnf41 | ring finger protein 41 | 3 | 0 |
miRNA-Drug Associations | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
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miRNA-Drug Resistance Associations | ||||||||||||||||||||
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