miRTarBase - #MIRT006972


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pre-miRNA Information
pre-miRNA hsa-mir-10a   
Genomic Coordinates chr17: 48579838 - 48579947
Synonyms MIRN10A, hsa-mir-10a, miRNA10A, mir-10a, MIR10A
Description Homo sapiens miR-10a stem-loop
Comment This human miRNA was predicted by computational methods using conservation with mouse and Fugu rubripes sequences .
RNA Secondary Structure
Associated Diseases

Mature miRNA Information
Mature miRNA hsa-miR-10a-5p
Sequence 22| UACCCUGUAGAUCCGAAUUUGUG |44
Evidence Experimental
Experiments Cloned
DRVs in miRNA
Mutant ID Mutant Position Mutant Source
COSN30152819 13 COSMIC
COSN30458892 14 COSMIC
COSN23023008 15 COSMIC
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs1333990950 2 dbSNP
rs770328167 3 dbSNP
rs1453440972 5 dbSNP
rs1391955925 7 dbSNP
rs1157653116 8 dbSNP
rs760091682 10 dbSNP
rs1161287321 12 dbSNP
rs369632753 13 dbSNP
rs985848773 14 dbSNP
rs772649724 18 dbSNP
rs529115879 22 dbSNP
rs375865628 23 dbSNP
Putative Targets

miRNA Expression profile
Human miRNA Tissue Atlas
miRNAs in Extracellular Vesicles
Circulating MicroRNA Expression Profiling
Biomarker Information
Biomarker ID Name Type Discovered From Mode Level Source Testing Methods
B6HZE2 miR-10a Safety Biomarker (SAF) Clinical/Experimental Data Expression Increase Muscle Reverse transcription-polymerase chain reaction
Gene Information
Gene Symbol EPHA4   
Synonyms HEK8, SEK, TYRO1
Description EPH receptor A4
Transcript NM_004438   
Expression
Putative miRNA Targets on EPHA4
3'UTR of EPHA4
(miRNA target sites are highlighted)		 
>EPHA4|NM_004438|3'UTR
   1 GCCAGTACTGAATAAACTCAAAACTCTTGAAATTAGTTTACCTCATCCATGCACTTTAATTGAAGAACTGCACTTTTTTT
  81 ACTTCGTCTTCGCCCTCTGAAATTAAAGAAATGAAAAAAAAAAACAATATCTGCAGCGTTGCTTGGTGCACAGATTGCTG
 161 AAACTGTGGGGCTTACAGAAATGACTGCCGGTCATTTGAATGAGACCTGGAACAAATCGTTTCTCAGAAGTACTTTTCTG
 241 TTCATCACCAGTCTGTAAAATACATGTACCTATAGAAATAGAACACTGCCTCTGAGTTTTGATGCTGTATTTGCTGCCAG
 321 ACACTGAGCTTCTGAGACATCCCTGATTCTCTCTCCATTTGGAATTACAACCATTGTATTTTGTTTGTGGCATAAATTAC
 401 AGTCATCTGTCTTTCACTGGAATGAAGACCATGCCTAGGAACATTTTTTAAGGACTCAGCTGTGGCTTTTAGGGCTTGGT
 481 TCATACCATGGGGGAAAAAAAAGTCCTAGGAGAAAGCGACGTGGCTCATTAGTGTTGCCTCTTCAGTGCTCAAGCCGCCT
 561 GGTGGATTCCTATGACACAGGGGGCCTGGAAAGAAAGGGAAAGTGGATTTAAAATATATATATACGTAACCCAAGCCCCA
 641 TAACCCCTAACTGGACAAATGAGGTCTGTTTCTTTGGGCCTGAGGCTGTGCCATATAAAGTCTTATTTTGGGACTTTACA
 721 AACTTGTCCTAACTATCTTGTGGATAGTGGGCTGTGACAATCTGGAATAGAGAACGTTCACACTTCGCTCCTTTAAAGAA
 801 GCGACCCCAGATCTGCAAGGGAGTAGATTCTGCTATCTTGGCCTCACAGCCCTTCCTGTTGATTACAAAGCCCGTGGAAG
 881 AAAACAGAACACACCCTCCTCAGTTCCGTCTAAATGTGTTTCTTCTGCTTCAATTACACCAGTTCTGGGGCAAAGACACT
 961 GATGAAACAACACCCATACCTGAAAAGAATAAATGTGTGACTTTCAAATCCCCTTTCGCAGTGAAAGAAACAGCAAACAC
1041 TTAAGATTCAGCATCTGTTCTCCAGTTGCACTGAGGAATGCACTGTCTCGCAGCACCAGCTCTGCAGAGCCCTTGCCCCA
1121 GACTCTTTGCGGTTTTATTTATATGTATTTCCATATTTCATTCCTGTGTGTCACTGCTGCATTGGTGTGGCAGCAAGTGA
1201 CCAAATGCTACAGGTCTTACTATGGACACCAGGTCAGGTGCAACCACACAAAACAAAGCCAGTTCCATGAGCTGCCTATG
1281 ATATGCATTGCGGAAGTAACATTTTACCCAGGGTGTGCCATTGCAGTGATATAAATATATTTTTTTCTTAGACTAAATAT
1361 GAGCTGACTATCTCTTTTGATGTGTGTACATAGGTGTGAGTGTGTCTGTATGCGTGCCTGTCTGTGTGCGGGTGTGTGTA
1441 TGTGCGTAGCCTCATGCTTAGGACTACCCATGAATGTTGTGGAATGCTACACCTGGAGAGTTCTGGTTTTCCACCAGTTT
1521 CAAGATGAAGAACTACATGATACAGTGGACCTGGAGACCATCCCCTTGGAAAGACAACCCAGAGATGTTCAGCATCCTGT
1601 ATCTACACGCATCCTGTATCTACACGTGTATTTTGTAGCTGTCACACTAACCTTAATAAGAATTCTACAGCTTTGGACAG
1681 AGGCATTTTCACCTTAATGGTGAAGTAATTTAAAATATAAATCCATTCAGGTGACAACCCATCATCAAAATTACAAATTT
1761 TCTGATTGAACTCATCTGAATCATCAGTTCCTTGATGGAGAGAGAGAAGGAGATGGAATGTGTCTGGTAACCCCAAATGG
1841 AGTACAAGTAGCCTTTGTTTTCCTGCATAAATGGACTTGTTGAATGCGAACGAATATATGCAATTCATATACTTTTGGAG
1921 ATGAACGTAGATATGTGTGTCAGCTTTGAGATGGTGTGTCCTGGATTAATACTTTGTCTCCCAATATCACAGAAAAATAC
2001 ATGCCAGTGACTCTTGAGGTTAAGGTAGTTGGGATGAAATGGCCTCAGGCAATTTCACATTCCCTAATTACCTGGAAAGT
2081 TCTACAGTAATTAATATGCAGCTAACTCCTGTTGCCCTCACAAGAGCATCAGCCTTCTAGAATCGGAGCTCCGGAGTGTG
2161 AAGATTCAGTATTGATATGATATGTATACCAAACTCCAGCCAACTTACTGCCATTTTTCATAATCTGAGTGGCTGCCTTG
2241 CTTATCCTAAGCTGTGGTTGCAGAAACCGTGGCCATTTATATAAGCTATAACATCAAATCAGGGAAAAATGAGGAAAAAA
2321 AATAGATTCTGAACCATTTATTGTTGAATAAGTAGAGAAAATCATCAATAAATATTTATTACATTCTGACAGGGTGTGTG
2401 GCATTGTGTTCTATGCCAGAGTGACAAAGTTGATTCACCCCTTTTTGGGGACCTTAATATATTTTTTAAGGGATGTGCCT
2481 ATGCATTGATGCCTGAAAAATATGTATAAAGAAATGAGGTTGACTCTTCTGAGCAGTTCATCTTTTCCAGAGGTAAGGGT
2561 AGGAGGCCAACTTCAGGGTCTGGGTCTGAGCCCGTGGGCAAGCCCTGGCCGAGTGAGCTCCAATGCTAACTCATGTGCCG
2641 ATCTCTAGAGCAGTGGGAAACTACCCCGCTGCACCAAATCAAGTAGCTTCACCTTGTGTATGCAGGCCCCAAGTTATTTT
2721 TTAGCAATCTTACGAGTGAAATGTTCTGGTGGGTTGAAAAACGTTCTTATTTTAAAGAAAGGTTGTGCTCGCTACACTGC
2801 TGGTGTGTGCATTCTGAGACCTCTTGTATTCAATCTGTGAAGGATATGTGTATTAATCCGTACACCCGTATAGCCTCAAT
2881 ATTTGTCTGAAGACACTTAAATTCTGACCCATAAAGGAAAGTTCTAGAAGCAATATTTTCACTTATTTAACATTCTCCAA
2961 ACAACATCAAGCATTGATACACACTGAAGAGTGCGTTTATTTTTTGTATCACTCTAAGTATGTTGGAATATGCAAGGACT
3041 GTGGTTCAAATTAGAATGTATAAGGCATATTATAATTTAGTTCATACTGAATAAGAAATTAACAGAACATTGTTCGGTTC
3121 ACACGTTCCAAACTTTGAGTGATTTCTGGAGTTAGACATAGATTTTCTATTTTGTTTTAATTTGTCAAGGTATTTTTCTT
3201 CCCTTCATGAACTTTAGGTACACATAACTTATGTCATTTATTTATGGTCTTTTATACCTAGTTTGTAAAATTGTAAAATA
3281 GCAAACTAAATGCAAAGAGTTTGCATTTGAAAATAATAAAGTAGTTGCCGTATACAACCCTGCAAAAAAAAAAAAAAAAA
3361 A
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1 
miRNA  3' guGUUUAAGCCUAGAUGUCCCAu 5'
            :| |||| |    ||||||| 
Target 5' atTACATTCTG----ACAGGGTg 3'
 2378 - 2396 151.00 -13.00
2 
miRNA  3' guGUUUAAGCCUA--GAUGUCCCau 5'
            :::||||  ||  | ||||||  
Target 5' ggTGGATTCCTATGAC-ACAGGGgg 3'
 561 - 584 134.00 -11.90
3 
miRNA  3' guguuuaagccuagauGUCCCAu 5'
                          |||||| 
Target 5' gaagtaacattttaccCAGGGTg 3'
 1293 - 1315 120.00 -9.90
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN31612892 1 COSMIC
COSN30171216 5 COSMIC
COSN20086270 12 COSMIC
COSN30467816 26 COSMIC
COSN30450453 29 COSMIC
COSN30165979 43 COSMIC
COSN31567819 44 COSMIC
COSN30447331 48 COSMIC
COSN13973563 52 COSMIC
COSN30118015 56 COSMIC
COSN26975159 57 COSMIC
COSN30102938 71 COSMIC
COSN18726665 74 COSMIC
COSN30121148 81 COSMIC
COSN30449296 85 COSMIC
COSN30514248 86 COSMIC
COSN13973562 91 COSMIC
COSN29463092 99 COSMIC
COSN31498525 103 COSMIC
COSN30104135 104 COSMIC
COSN31559110 108 COSMIC
COSN27381061 113 COSMIC
COSN28962352 114 COSMIC
COSN29387276 117 COSMIC
COSN13973561 137 COSMIC
COSN19728111 138 COSMIC
COSN30469292 156 COSMIC
COSN31565242 178 COSMIC
COSN30174738 183 COSMIC
COSN26507174 208 COSMIC
COSN4802326 297 COSMIC
COSN32064115 332 COSMIC
COSN21295136 382 COSMIC
COSN9874725 457 COSMIC
COSN7798871 480 COSMIC
COSN30317406 556 COSMIC
COSN31563746 583 COSMIC
COSN31518769 613 COSMIC
COSN31572557 625 COSMIC
COSN23644694 638 COSMIC
COSN28816998 721 COSMIC
COSN20097846 747 COSMIC
COSN6170858 1009 COSMIC
COSN27393200 1300 COSMIC
COSN6681014 1329 COSMIC
COSN27352267 1539 COSMIC
COSN17288317 1608 COSMIC
COSN22058966 1812 COSMIC
COSN19161586 1856 COSMIC
COSN19161620 1922 COSMIC
COSN6940615 2194 COSMIC
COSN28062598 2237 COSMIC
COSN29000312 2251 COSMIC
COSN27378392 2252 COSMIC
COSN1234106 2253 COSMIC
COSN1234105 2335 COSMIC
COSN4802325 2369 COSMIC
COSN16500937 2413 COSMIC
COSN6170857 2623 COSMIC
COSN20609242 2717 COSMIC
COSN25204163 2911 COSMIC
COSN5789245 2916 COSMIC
COSN29026615 3009 COSMIC
COSN30032053 3346 COSMIC
COSN15805003 3405 COSMIC
COSN15805814 3406 COSMIC
COSN6170856 3409 COSMIC
COSN26517424 3779 COSMIC
COSN1826910 3823 COSMIC
COSN9230134 3865 COSMIC
COSN17719359 3880 COSMIC
COSN6940613 4225 COSMIC
COSN25662581 4242 COSMIC
COSN1826909 4284 COSMIC
COSN1826908 4478 COSMIC
COSN24604173 4729 COSMIC
COSN6170855 4812 COSMIC
COSN6940612 4813 COSMIC
COSN16555188 4859 COSMIC
COSN24832470 4990 COSMIC
COSN30367387 4991 COSMIC
COSN31588520 5607 COSMIC
COSN6170854 5642 COSMIC
COSN26677319 5727 COSMIC
COSN31563787 5728 COSMIC
COSN31521647 5760 COSMIC
COSN20097844 5774 COSMIC
COSN31566039 5786 COSMIC
COSN31538640 5836 COSMIC
COSN25036958 5848 COSMIC
COSN26583766 5883 COSMIC
COSN31590757 5888 COSMIC
COSN16129644 6028 COSMIC
COSN8985164 6084 COSMIC
COSN23015941 6102 COSMIC
COSN19167368 6143 COSMIC
COSN20735807 6162 COSMIC
COSN6170853 6195 COSMIC
COSN19657916 6207 COSMIC
COSN16077370 6259 COSMIC
COSN5789244 6295 COSMIC
COSN29569455 6399 COSMIC
COSN31562583 6446 COSMIC
COSN8608686 6521 COSMIC
COSN31515190 6544 COSMIC
COSN22564554 6583 COSMIC
COSN31548969 6651 COSMIC
COSN31594113 6760 COSMIC
COSN31487155 6767 COSMIC
COSN30172499 6816 COSMIC
COSN16129005 6850 COSMIC
COSN31617634 6861 COSMIC
COSN515877 6924 COSMIC
COSN24956603 6938 COSMIC
COSN26602676 6942 COSMIC
COSN16131441 7011 COSMIC
COSN30544594 7106 COSMIC
COSN31609097 7122 COSMIC
COSN20090734 7128 COSMIC
COSN31580202 7172 COSMIC
COSN19658633 7234 COSMIC
COSN22422041 7296 COSMIC
COSN5498149 7304 COSMIC
COSN5498148 7355 COSMIC
COSN31517833 7433 COSMIC
COSN8985163 7516 COSMIC
COSN31548105 7524 COSMIC
COSN27356543 7543 COSMIC
COSN20307481 7602 COSMIC
COSN31545345 7676 COSMIC
COSN23015940 7748 COSMIC
COSN31534665 7771 COSMIC
COSN27582308 7929 COSMIC
COSN31516688 7971 COSMIC
COSN23015939 7983 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs374978154 3 dbSNP
rs190789849 5 dbSNP
rs1268434127 7 dbSNP
rs1411137364 8 dbSNP
rs1211208258 11 dbSNP
rs890721348 15 dbSNP
rs781050409 16 dbSNP
rs542648852 20 dbSNP
rs1235420429 23 dbSNP
rs368299514 25 dbSNP
rs763963843 29 dbSNP
rs1397083251 41 dbSNP
rs1472505874 41 dbSNP
rs758150708 42 dbSNP
rs199945501 44 dbSNP
rs1414388179 46 dbSNP
rs372102840 51 dbSNP
rs778374044 78 dbSNP
rs1350561698 81 dbSNP
rs904565976 85 dbSNP
rs1043034641 86 dbSNP
rs756701897 91 dbSNP
rs776077919 92 dbSNP
rs1337422460 99 dbSNP
rs1413858426 104 dbSNP
rs1399898100 108 dbSNP
rs1169502686 113 dbSNP
rs1462296137 114 dbSNP
rs1321833762 116 dbSNP
rs1389223814 117 dbSNP
rs1055389734 119 dbSNP
rs554124440 124 dbSNP
rs1273774149 125 dbSNP
rs566584977 125 dbSNP
rs1181547759 126 dbSNP
rs1414622279 128 dbSNP
rs1407210175 130 dbSNP
rs1168446485 136 dbSNP
rs939161160 137 dbSNP
rs552374804 138 dbSNP
rs767984715 141 dbSNP
rs77014597 143 dbSNP
rs1277111485 145 dbSNP
rs920282138 165 dbSNP
rs578192888 166 dbSNP
rs1229475614 169 dbSNP
rs1271862337 172 dbSNP
rs964469706 189 dbSNP
rs1017330822 190 dbSNP
rs1277184371 191 dbSNP
rs1043194499 193 dbSNP
rs558368123 197 dbSNP
rs1226502043 201 dbSNP
rs538469136 202 dbSNP
rs1238211653 203 dbSNP
rs1473901516 204 dbSNP
rs1385196355 206 dbSNP
rs954865208 212 dbSNP
rs1184816919 213 dbSNP
rs1032246202 215 dbSNP
rs560887147 216 dbSNP
rs1338694200 217 dbSNP
rs939623611 218 dbSNP
rs904764392 219 dbSNP
rs1043054186 228 dbSNP
rs1012847654 233 dbSNP
rs894569060 235 dbSNP
rs568969383 238 dbSNP
rs1229749228 241 dbSNP
rs1300521257 243 dbSNP
rs938757408 250 dbSNP
rs1343511265 252 dbSNP
rs927858364 260 dbSNP
rs751265804 265 dbSNP
rs1200171616 281 dbSNP
rs1279823707 286 dbSNP
rs1166433763 293 dbSNP
rs1444297105 295 dbSNP
rs984604568 305 dbSNP
rs373979925 309 dbSNP
rs1189118047 319 dbSNP
rs929236819 325 dbSNP
rs920480725 330 dbSNP
rs1477001343 338 dbSNP
rs1171737580 342 dbSNP
rs973084143 354 dbSNP
rs942976180 356 dbSNP
rs765981580 373 dbSNP
rs1028332831 374 dbSNP
rs1162198368 376 dbSNP
rs987270084 397 dbSNP
rs1318178900 402 dbSNP
rs1471515872 405 dbSNP
rs1210753856 407 dbSNP
rs762405674 409 dbSNP
rs1184556923 416 dbSNP
rs563585931 424 dbSNP
rs1233191939 438 dbSNP
rs901104406 441 dbSNP
rs544483024 444 dbSNP
rs1203379083 449 dbSNP
rs998736041 450 dbSNP
rs1267803215 462 dbSNP
rs968961688 463 dbSNP
rs1361949473 475 dbSNP
rs1210594070 478 dbSNP
rs199893010 478 dbSNP
rs948476926 478 dbSNP
rs115967541 484 dbSNP
rs535065025 487 dbSNP
rs894511921 489 dbSNP
rs1156701134 491 dbSNP
rs73994242 495 dbSNP
rs938336730 495 dbSNP
rs928243305 496 dbSNP
rs1388015317 497 dbSNP
rs972957733 499 dbSNP
rs1324864241 500 dbSNP
rs1333173986 501 dbSNP
rs548278031 503 dbSNP
rs767624569 503 dbSNP
rs1330038835 504 dbSNP
rs910049970 517 dbSNP
rs984268089 520 dbSNP
rs549541022 521 dbSNP
rs1290435024 525 dbSNP
rs976780674 526 dbSNP
rs1472699993 527 dbSNP
rs776274348 534 dbSNP
rs1031625216 546 dbSNP
rs1047569408 548 dbSNP
rs546548517 555 dbSNP
rs899084649 556 dbSNP
rs768540534 557 dbSNP
rs1021895092 558 dbSNP
rs1411867004 559 dbSNP
rs1310933673 565 dbSNP
rs1339933100 566 dbSNP
rs1245526341 572 dbSNP
rs1361443317 573 dbSNP
rs1202994443 577 dbSNP
rs1273609780 580 dbSNP
rs1483296770 581 dbSNP
rs1197164030 583 dbSNP
rs1012722091 584 dbSNP
rs1422888611 585 dbSNP
rs1037588725 589 dbSNP
rs1187594013 591 dbSNP
rs533071367 592 dbSNP
rs186282351 598 dbSNP
rs1448182957 614 dbSNP
rs894258025 615 dbSNP
rs1056789018 616 dbSNP
rs550362044 619 dbSNP
rs73085995 622 dbSNP
rs897487747 625 dbSNP
rs987523463 625 dbSNP
rs562605230 626 dbSNP
rs924334253 627 dbSNP
rs543112307 632 dbSNP
rs968827186 645 dbSNP
rs1226075296 653 dbSNP
rs1021743211 656 dbSNP
rs910113133 658 dbSNP
rs529244893 664 dbSNP
rs182003588 666 dbSNP
rs1254062990 678 dbSNP
rs1482698193 690 dbSNP
rs540302931 694 dbSNP
rs1035723983 697 dbSNP
rs1463214205 706 dbSNP
rs578244645 711 dbSNP
rs879095897 714 dbSNP
rs1188472546 717 dbSNP
rs1490937895 719 dbSNP
rs10196918 721 dbSNP
rs887216802 732 dbSNP
rs1430841137 735 dbSNP
rs1221152385 739 dbSNP
rs1025695381 743 dbSNP
rs993337614 744 dbSNP
rs1377469075 749 dbSNP
rs1339017102 750 dbSNP
rs565044149 750 dbSNP
rs1286448463 754 dbSNP
rs1386524935 756 dbSNP
rs1434386812 757 dbSNP
rs899030579 763 dbSNP
rs771079876 770 dbSNP
rs1383877150 773 dbSNP
rs943290082 775 dbSNP
rs1286364303 776 dbSNP
rs1225168456 777 dbSNP
rs1233517295 780 dbSNP
rs77114145 781 dbSNP
rs560689841 786 dbSNP
rs1051459719 787 dbSNP
rs149028678 788 dbSNP
rs1487123251 789 dbSNP
rs1190020011 794 dbSNP
rs749320861 797 dbSNP
rs1267098546 801 dbSNP
rs924395875 802 dbSNP
rs1318408229 803 dbSNP
rs1456239364 805 dbSNP
rs1021529502 806 dbSNP
rs1159944384 807 dbSNP
rs1347090627 809 dbSNP
rs1455257915 809 dbSNP
rs1157554033 811 dbSNP
rs1481684728 819 dbSNP
rs1291784668 829 dbSNP
rs1366629235 847 dbSNP
rs769431518 849 dbSNP
rs778003218 850 dbSNP
rs1348188306 864 dbSNP
rs575917786 869 dbSNP
rs770412344 879 dbSNP
rs1268171534 891 dbSNP
rs958530367 892 dbSNP
rs1219984993 897 dbSNP
rs1265310224 909 dbSNP
rs1489093884 916 dbSNP
rs78265339 917 dbSNP
rs371432470 933 dbSNP
rs1002586816 936 dbSNP
rs914765841 939 dbSNP
rs1410249722 949 dbSNP
rs1036458663 963 dbSNP
rs1164191644 965 dbSNP
rs991605453 972 dbSNP
rs959000322 973 dbSNP
rs1425247058 974 dbSNP
rs1464481707 974 dbSNP
rs928856899 975 dbSNP
rs981468144 976 dbSNP
rs1279827867 979 dbSNP
rs1205517043 990 dbSNP
rs1375087005 997 dbSNP
rs951424218 1007 dbSNP
rs1312648522 1012 dbSNP
rs1322801053 1015 dbSNP
rs188130444 1019 dbSNP
rs755331380 1020 dbSNP
rs1482973653 1021 dbSNP
rs921437046 1023 dbSNP
rs1234763356 1024 dbSNP
rs995627552 1030 dbSNP
rs1217192839 1031 dbSNP
rs962767108 1033 dbSNP
rs376067136 1035 dbSNP
rs1445135458 1039 dbSNP
rs1041194017 1045 dbSNP
rs1297853213 1047 dbSNP
rs572714380 1048 dbSNP
rs1362446053 1056 dbSNP
rs1329299568 1062 dbSNP
rs1355876131 1066 dbSNP
rs1445381505 1067 dbSNP
rs1338070800 1069 dbSNP
rs1471250879 1071 dbSNP
rs1360186960 1073 dbSNP
rs1007774842 1075 dbSNP
rs1185723135 1076 dbSNP
rs1175885938 1096 dbSNP
rs1413106805 1097 dbSNP
rs1421976128 1108 dbSNP
rs79062349 1109 dbSNP
rs924660370 1112 dbSNP
rs1449048428 1113 dbSNP
rs1052084208 1116 dbSNP
rs1342094991 1118 dbSNP
rs1246283260 1119 dbSNP
rs1185427978 1121 dbSNP
rs1215454817 1124 dbSNP
rs977853485 1126 dbSNP
rs997437313 1127 dbSNP
rs1483537965 1129 dbSNP
rs10184094 1140 dbSNP
rs914513295 1145 dbSNP
rs751896527 1146 dbSNP
rs1207818681 1152 dbSNP
rs1388170695 1154 dbSNP
rs1041346864 1163 dbSNP
rs1309010822 1167 dbSNP
rs1168230582 1171 dbSNP
rs1275041116 1173 dbSNP
rs1227248760 1176 dbSNP
rs947167546 1188 dbSNP
rs544871631 1191 dbSNP
rs1412373442 1192 dbSNP
rs771037921 1193 dbSNP
rs1175001139 1201 dbSNP
rs1406159905 1209 dbSNP
rs1316540907 1224 dbSNP
rs1454064380 1226 dbSNP
rs779700954 1228 dbSNP
rs758054186 1229 dbSNP
rs1432138452 1231 dbSNP
rs1302752943 1235 dbSNP
rs958582639 1237 dbSNP
rs1356673519 1247 dbSNP
rs183714996 1250 dbSNP
rs937465711 1251 dbSNP
rs928910667 1259 dbSNP
rs571761707 1265 dbSNP
rs1002639036 1266 dbSNP
rs144874317 1267 dbSNP
rs1247512447 1273 dbSNP
rs749928196 1286 dbSNP
rs372184521 1287 dbSNP
rs1255439729 1296 dbSNP
rs565158772 1300 dbSNP
rs1190423247 1314 dbSNP
rs1481549726 1317 dbSNP
rs368924816 1324 dbSNP
rs568270574 1328 dbSNP
rs764782633 1334 dbSNP
rs974054169 1352 dbSNP
rs887450039 1355 dbSNP
rs1401791138 1358 dbSNP
rs1320917048 1360 dbSNP
rs1329868443 1363 dbSNP
rs1252291183 1364 dbSNP
rs368273285 1365 dbSNP
rs997101218 1369 dbSNP
rs1226843220 1370 dbSNP
rs549175860 1371 dbSNP
rs962799786 1372 dbSNP
rs749185709 1374 dbSNP
rs1481908213 1376 dbSNP
rs761712449 1377 dbSNP
rs1198374413 1378 dbSNP
rs1481201135 1393 dbSNP
rs149910367 1395 dbSNP
rs953370727 1398 dbSNP
rs573034192 1401 dbSNP
rs1470146766 1410 dbSNP
rs1041246106 1413 dbSNP
rs1320557706 1423 dbSNP
rs1405312269 1428 dbSNP
rs181237674 1429 dbSNP
rs944173949 1434 dbSNP
rs1288031622 1435 dbSNP
rs547012409 1436 dbSNP
rs563359712 1437 dbSNP
rs868841765 1438 dbSNP
rs903096170 1447 dbSNP
rs1282532788 1450 dbSNP
rs1354109326 1454 dbSNP
rs1041379336 1455 dbSNP
rs1309020324 1460 dbSNP
rs189643586 1467 dbSNP
rs1202779610 1469 dbSNP
rs1369008275 1477 dbSNP
rs892889474 1498 dbSNP
rs1183280765 1501 dbSNP
rs1366253646 1502 dbSNP
rs1055916350 1503 dbSNP
rs937099025 1511 dbSNP
rs1295477180 1515 dbSNP
rs763968596 1519 dbSNP
rs907403470 1521 dbSNP
rs1162704216 1527 dbSNP
rs1420811810 1528 dbSNP
rs1412618387 1535 dbSNP
rs991410831 1537 dbSNP
rs1397431428 1546 dbSNP
rs1181260226 1550 dbSNP
rs937278099 1551 dbSNP
rs201109701 1552 dbSNP
rs201745291 1552 dbSNP
rs367692425 1552 dbSNP
rs375973264 1552 dbSNP
rs386392709 1552 dbSNP
rs554774705 1552 dbSNP
rs574705272 1552 dbSNP
rs796358186 1552 dbSNP
rs1481939063 1553 dbSNP
rs1270646397 1554 dbSNP
rs1210093533 1555 dbSNP
rs553958355 1557 dbSNP
rs1263182189 1561 dbSNP
rs981271844 1562 dbSNP
rs1245443184 1567 dbSNP
rs1448238892 1567 dbSNP
rs1331924715 1568 dbSNP
rs1170129642 1569 dbSNP
rs1045880813 1573 dbSNP
rs139068049 1576 dbSNP
rs1171095768 1577 dbSNP
rs1349055422 1583 dbSNP
rs1401783492 1584 dbSNP
rs1453381651 1593 dbSNP
rs918811323 1595 dbSNP
rs974086669 1599 dbSNP
rs1303804245 1600 dbSNP
rs1294545306 1605 dbSNP
rs544923308 1607 dbSNP
rs760470021 1613 dbSNP
rs1390204480 1615 dbSNP
rs911220361 1627 dbSNP
rs112988947 1631 dbSNP
rs1203708301 1633 dbSNP
rs1458877523 1634 dbSNP
rs1389352765 1635 dbSNP
rs1262863444 1642 dbSNP
rs955468716 1643 dbSNP
rs1197203544 1654 dbSNP
rs1428809112 1656 dbSNP
rs900113296 1665 dbSNP
rs367840460 1686 dbSNP
rs975912836 1693 dbSNP
rs1386592350 1697 dbSNP
rs1471545072 1710 dbSNP
rs1451535162 1719 dbSNP
rs1288272432 1736 dbSNP
rs967286917 1739 dbSNP
rs1298970007 1742 dbSNP
rs1344426375 1744 dbSNP
rs542089621 1761 dbSNP
rs60271423 1762 dbSNP
rs1011204089 1763 dbSNP
rs1326549835 1770 dbSNP
rs1214473002 1771 dbSNP
rs892837216 1778 dbSNP
rs1264816457 1780 dbSNP
rs1268681103 1784 dbSNP
rs903342557 1788 dbSNP
rs1201945100 1799 dbSNP
rs1042245587 1808 dbSNP
rs1418522449 1816 dbSNP
rs1187820005 1817 dbSNP
rs1464936656 1825 dbSNP
rs16862638 1826 dbSNP
rs1455305907 1829 dbSNP
rs1001711952 1830 dbSNP
rs1364776865 1846 dbSNP
rs1208677607 1847 dbSNP
rs1405176221 1848 dbSNP
rs1327635006 1865 dbSNP
rs763325821 1870 dbSNP
rs1234415591 1873 dbSNP
rs1370730102 1877 dbSNP
rs1222665761 1884 dbSNP
rs1046331933 1885 dbSNP
rs74674664 1886 dbSNP
rs201757702 1887 dbSNP
rs1410325837 1888 dbSNP
rs1491170472 1888 dbSNP
rs201864451 1888 dbSNP
rs34786402 1888 dbSNP
rs398042902 1888 dbSNP
rs539009434 1888 dbSNP
rs1491300554 1889 dbSNP
rs1161671017 1890 dbSNP
rs1491537282 1890 dbSNP
rs937331831 1893 dbSNP
rs1424987202 1894 dbSNP
rs747767960 1896 dbSNP
rs1038671077 1908 dbSNP
rs1298216372 1909 dbSNP
rs200318871 1909 dbSNP
rs746574056 1909 dbSNP
rs749101677 1909 dbSNP
rs780954671 1918 dbSNP
rs1451076107 1923 dbSNP
rs941592617 1927 dbSNP
rs911239432 1928 dbSNP
rs1366058322 1929 dbSNP
rs1248574660 1932 dbSNP
rs1319914088 1942 dbSNP
rs981322914 1943 dbSNP
rs576434653 1957 dbSNP
rs934083498 1958 dbSNP
rs146727414 1971 dbSNP
rs1205540594 1976 dbSNP
rs111430879 1978 dbSNP
rs1183081038 1979 dbSNP
rs1173009349 1984 dbSNP
rs1242407713 1985 dbSNP
rs967149205 1989 dbSNP
rs1417177988 2001 dbSNP
rs1409002502 2008 dbSNP
rs1375621907 2016 dbSNP
rs1170775443 2017 dbSNP
rs985005178 2020 dbSNP
rs951840166 2027 dbSNP
rs1170129040 2028 dbSNP
rs1029145426 2033 dbSNP
rs974429314 2038 dbSNP
rs1449651548 2039 dbSNP
rs1020066057 2040 dbSNP
rs1186052167 2050 dbSNP
rs1215370490 2068 dbSNP
rs990064963 2070 dbSNP
rs1275312446 2076 dbSNP
rs1321709503 2077 dbSNP
rs1463991184 2083 dbSNP
rs957267026 2084 dbSNP
rs1258860264 2088 dbSNP
rs1484191678 2095 dbSNP
rs1034456533 2097 dbSNP
rs1019912584 2098 dbSNP
rs568299824 2101 dbSNP
rs1240126475 2105 dbSNP
rs1008493291 2110 dbSNP
rs773406025 2115 dbSNP
rs1421156560 2130 dbSNP
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rs1024016371 2141 dbSNP
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Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions QGY-7703
Location of target site 3'UTR
Tools used in this research miRanda , PicTar , TargetScan
Original Description (Extracted from the article) ... miR-10a targets the 3'-UTR of the EphA4 transcript and down-regulates its expression. ...

- Yan Y; Luo YC; Wan HY; Wang J; Zhang PP; et al., 2013, Hepatology (Baltimore, Md.).

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1 
miRNA  3' guGUUUAAGCCUAGAUGUCCCAu 5'
            :| |||| |    ||||||| 
Target 5' atTACATTCTG----ACAGGGTg 3'
 		1 - 19
Article - Yan Y; Luo YC; Wan HY; Wang J; Zhang PP; et al.
- Hepatology (Baltimore, Md.), 2013
UNLABELLED: MicroRNAs (miRNAs) have been reported to be associated with the development of cancers. However, the function of miRNAs in human hepatocellular carcinoma (HCC) remains largely undefined. Here we found that overexpression of miR-10a promoted the migration and invasion of QGY-7703 and HepG2 cells in vitro but suppressed metastasis in vivo. Cell adhesion assays showed that miR-10a suppressed HCC cell-matrix adhesion, which could explain the results of the in vivo animal experiments. The Eph tyrosine kinase receptor, EphA4, was identified as the direct and functional target gene of miR-10a. Knockdown of EphA4 phenocopied the effect of miR-10a and ectopic expression of EphA4 restored the effect of miR-10a on migration, invasion, and adhesion in HCC cells. We further demonstrated that miR-10a and EphA4 regulated the epithelial-mesenchymal transition process and the beta1-integrin pathway to affect cell invasion and adhesion. CONCLUSION: Our findings highlight the importance of miR-10a in regulating the metastatic properties of HCC by directly targeting EphA4 and may provide new insights into the pathogenesis of HCC.
LinkOut: [PMID: 22996586]
Experimental Support 2 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
     
Conditions Flp-In T-REx 293-hAGO1 cells
Location of target site CDS
Original Description (Extracted from the article) ... Validation of interactions identified by CLASH suppports their reliability. ...

- Helwak A; Kudla G; Dudnakova T; Tollervey D, 2013, Cell.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1 
miRNA  3' guguuuaagCCUAGAUGUCCCAu 5'
                   || ||  |||||| 
Target 5' --tgtcacaGGTTC--CAGGGTa 3'
 		1 - 19
Article - Helwak A; Kudla G; Dudnakova T; Tollervey D
- Cell, 2013
MicroRNAs (miRNAs) play key roles in gene regulation, but reliable bioinformatic or experimental identification of their targets remains difficult. To provide an unbiased view of human miRNA targets, we developed a technique for ligation and sequencing of miRNA-target RNA duplexes associated with human AGO1. Here, we report data sets of more than 18,000 high-confidence miRNA-mRNA interactions. The binding of most miRNAs includes the 5' seed region, but around 60% of seed interactions are noncanonical, containing bulged or mismatched nucleotides. Moreover, seed interactions are generally accompanied by specific, nonseed base pairing. 18% of miRNA-mRNA interactions involve the miRNA 3' end, with little evidence for 5' contacts, and some of these were functionally validated. Analyses of miRNA:mRNA base pairing showed that miRNA species systematically differ in their target RNA interactions, and strongly overrepresented motifs were found in the interaction sites of several miRNAs. We speculate that these affect the response of RISC to miRNA-target binding.
LinkOut: [PMID: 23622248]
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
GSE17498 Multiple myeloma 0.471 1.1e-3 -0.052 3.7e-1 40 Click to see details
GSE34608 Pulmonary tuberculosis and sarcoidosis 0.604 2.4e-3 0.615 2.0e-3 20 Click to see details
GSE19783 ER- ER- breast cancer -0.195 4.3e-2 -0.127 1.3e-1 79 Click to see details
GSE32688 Pancreatic cancer 0.299 4.8e-2 0.226 1.1e-1 32 Click to see details
GSE19536 Breast cancer -0.163 5.3e-2 -0.073 2.4e-1 100 Click to see details
GSE38226 Liver fibrosis 0.346 6.2e-2 0.534 6.3e-3 21 Click to see details
GSE26953 Aortic valvular endothelial cells 0.308 7.2e-2 0.283 9.0e-2 24 Click to see details
GSE35602 Colorectal cancer stromal tissue -0.289 8.1e-2 -0.359 3.9e-2 25 Click to see details
GSE21687 Ependynoma primary tumors 0.175 8.3e-2 0.082 2.6e-1 64 Click to see details
GSE15076 Monocyte-derived dendritic cells -0.496 1.1e-1 -0.310 2.3e-1 8 Click to see details
GSE14794 Lymphoblastoid cells 0.128 1.1e-1 0.124 1.2e-1 90 Click to see details
GSE27834 Pluripotent stem cells 0.241 1.8e-1 0.200 2.3e-1 16 Click to see details
GSE38974 Chronic obstructive pulmonary disease 0.181 1.9e-1 0.168 2.1e-1 25 Click to see details
GSE17306 Multiple myeloma -0.119 2.1e-1 -0.057 3.5e-1 49 Click to see details
GSE28544 Breast cancer -0.147 2.5e-1 -0.288 8.6e-2 24 Click to see details
GSE21849 B cell lymphoma 0.131 2.5e-1 0.161 2.0e-1 29 Click to see details
GSE21032 Prostate cancer 0.069 2.7e-1 -0.039 3.6e-1 83 Click to see details
GSE28260 Renal cortex and medulla -0.157 3.0e-1 -0.016 4.8e-1 13 Click to see details
GSE19783 ER+ ER+ breast cancer -0.092 3.5e-1 -0.200 2.0e-1 20 Click to see details
GSE19350 CNS germ cell tumors 0.093 3.9e-1 -0.077 4.1e-1 12 Click to see details
GSE42095 Differentiated embryonic stem cells 0.037 4.3e-1 -0.152 2.4e-1 23 Click to see details
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
LIHC 0.521 0 0.482 0 49 Click to see details
KIRC 0.423 0 0.348 0 68 Click to see details
STAD 0.375 0.02 0.314 0.04 32 Click to see details
COAD -0.661 0.04 -0.381 0.18 8 Click to see details
KIRP -0.304 0.05 -0.389 0.01 32