miRTarBase - #MIRT016661


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pre-miRNA Information
pre-miRNA hsa-mir-425   
Genomic Coordinates chr3: 49020148 - 49020234
Synonyms MIRN425, hsa-mir-425, MIR425
Description Homo sapiens miR-425 stem-loop
Comment The mature sequences were previously named miR-425-5p and miR-425-3p in .
RNA Secondary Structure
Associated Diseases

Mature miRNA Information
Mature miRNA hsa-miR-425-5p
Sequence 14| AAUGACACGAUCACUCCCGUUGA |36
Evidence Experimental
Experiments Cloned
Editing Events in miRNAs
Modification Type Position on miR Chromosome DNA Strand Genomic Position (hg38) List of PMIDs Variant details
A-to-I 7 3 - 49020215 27298257 MiREDiBase
A-to-I 10 3 - 49020212 26028588, 27298257 MiREDiBase
C-to-U 8 3 - 49020214 25692236, 27298257, 28550310 MiREDiBase
C-to-U 12 3 - 49020210 25692236, 27298257, 28550310 MiREDiBase
DRVs in miRNA
Mutant ID Mutant Position Mutant Source
COSN31612894 6 COSMIC
COSN30467646 18 COSMIC
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs1023872187 3 dbSNP
rs991519440 6 dbSNP
rs1258514883 9 dbSNP
rs778093756 14 dbSNP
rs1481930136 18 dbSNP
rs960897691 19 dbSNP
Putative Targets

miRNA Expression profile
Human miRNA Tissue Atlas
miRNAs in Extracellular Vesicles
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol DDX6   
Synonyms HLR2, P54, RCK
Description DEAD-box helicase 6
Transcript NM_004397   
Expression
Putative miRNA Targets on DDX6
3'UTR of DDX6
(miRNA target sites are highlighted)		 
>DDX6|NM_004397|3'UTR
   1 CAAGCATGCTTTGACAAATTACAAAAGGCTCGTTTGGATCTGTGACACATCGTTTTGGGGGGAATGCTCCTCTCTTTGTG
  81 GGTTTTTCATCTTTTATTTTGGAACTATGAAGACTTAAAAGAGCTCAGACATTTTCTTTTTTTAACTGGTGAAGAGAAAA
 161 AGGCTGAAAAGAAGGAATATACCTTTTTTGTTCCACTTGTTTGCACTGTGTGCTGACTGAACATTAGTTGCACTAACTGC
 241 TGGTTTTTAAAAAATGTTTTCTGGGGAAAGGGGACAAGGAAGGAAAAGAAAGAAGAGAAGGGGAGAAACCCTAAAAAGAG
 321 AAGAATCTTAATGAACACACAAGCTTGTCAATGATTTCAAAATTCTCCAACAGCTGACTCTCGTGCATTTCAACTTCTCC
 401 CTGATTCCTCATCCGTTTTTTAAGCCTGAAGAGCTTATTACTTATTTGTGCGAAGTGCCTTATGCTATGAGACCATTCAG
 481 AATATCATCTTTTAGACACAGCCCGAGGAATCAACAATAGTAACTCTTTCTTTCCGTTTTTTTTTCTTTTTCTTTTAAAA
 561 AATGTCTTCTTATTTTGGTTTCAGGTTGAAGTCTCTTCCCTTTCTACCCAGTACTCGAGCCCAGGGCTAGAAGTTGAAAC
 641 TCACTAGTAATGTTAAACACCATTTTTTTTTTCTTTTTGGGGAGGAGTTGATATGCAACTGCAGTTCATCCGCACTGTAA
 721 ATACATGTATTTAAAAAAACAATCCCAAGTAAAAATTTCTTCTGGGCTGAGTAGATAAAAAACATCATCGCTCCCAAAGG
 801 AAAGAGCAGTCTATCATTGCAGGAGCCATATGACAAGCCTTTGTGCTCTATAGCAGACACTAAAGACTGGGTTACATATG
 881 CCTCCAGTAGTAGTATGGCACTTGATGTGTAGACATGTCAGAGCCTTGGCCCTCTTTCCTCTGTGGCAAAGCGTGTCCCA
 961 TAGAAAATTGGGTGTGTATACTTGTATAACTTTGTAAATAAGTTTTTTTTCTGGGTTCATATATATATATATATATACAT
1041 ATATATATATTTTTTTTTGGATGAAGGTTGCTGGGATTAAGGGGATTAGAGTGATTATGGGAGCAGCTAAAGATGAGAGG
1121 GGCTCAGTTTTACGCAACACTAAATTCTAGAAAGTACTTTGGCCTCGTGCTGTAGAGAGCAGATTTCTATGGTACCCTGT
1201 GTTAGTAAAGGGGCCCAGAAATCTGGGATGTACTGTTTGCTGCCACACTGTCTCATCTAGTACCTTTGGAGTAGGTTTAC
1281 CAGAGAGAGCAAGGAAGCTTCAAAACATTGATAATTCAACATTTATTTTGAGAAGCTCTGATTTTGCTTCTTCCCCCTTT
1361 CTAAAAGTTTGAGGAATATTTCAAGCTCTGCAACAGGGGGCAAAGATTAATCTACCTTGCAGTGTAGGAATTCTATTGAG
1441 TGGCAGTGTCATTGAGCAGTATATATATAAAGCACAGATTTGCATTTCAGAATATTAGCCAGTACCAGCTTTGGTAATGT
1521 TAGCAGTTCTGGAGCTTAATTTTCTGTGGATCATTTCCTGTAGTGTGTAAATGTGTTGCCCTCTGCCCGCTTTGATACAT
1601 AAACTTTTGCAGGAATGGGCAACCTGAGAGCTGTTAACTTTCATGCTACAGAAAGCTGCTTGCCATTCTCTTGCATTGTG
1681 ACAAGAATTGTTACCTGTCATTTTGCACTGTAAATTGCTGGCAGATGCTTTACAGTCAATAGTGTTGCTTTAAATTGTGC
1761 CCCTCCCAACATGCTTGATGTTTGGCCTGATCTCCAGGCAAAAGGAGTGAGATGAATCAAAACCAGTGAACTTTTTTTTT
1841 TAATGTTTTTAATTCCCTTTTAACCCAGTGTACTAGGTCAATCAGGAGGCATCTGGAAAGGGGGGGAAAAAAGCAAAAAA
1921 CAAAATTAAAAAAAATTGATTTCCATATTTTATTTTTCAAAACCCTAAAATATTACAAAATAAGTCCCGCATATACTTTA
2001 ATGTTTTAACTCTTTTGGACAAAGGAATCAATTACTTGAAGTTGCTTTTTTGACTCTGCCTACTTCTGAGCAAACTATTT
2081 GCGACTCACCCACAATTCCTTGGAGATCAAAATCCTACAGATGCCTCCTGATGGGACATAGCCCTAACTCCTTAACAACT
2161 GTAGCAAGAACTGCACGGTACAAACCCAAAAAAGAACAAGCTCATCTATTTGGAACCCAAGCCTCATATTTTCTGTCCAG
2241 TCAATGTTGGTTACTAAATAGAAAACCTAATTAAGGAAGTAACTTTTTTCCAGGGAGGGGTGGGAGAGGGAATTTAAAAG
2321 GTGTCAACTTTTGACCAAAAAAATTGTGCCCTTGTACCGATGCAGCTCTCTTTCTCCCCCACCTCTTGCGAGATAAGAGG
2401 GATCATTCATGTAGAAGAAAAGAGTATAAATGCAATTCTGTATCTCGCTAGAGAACGTGTGGGTGACTAAACAAAAAGTG
2481 CAGTCTCCTTCACCAACTTTAGACTGCGTGGTGCCACATGCCTGTGGGTCCCTCTTAAAGCACAGACTTAAAATGGAAAG
2561 TATTACTGAAGTATAGCCTCTAATGAGGAGTGGCACTTAAACTATCTGGGACACCACTACTGGACACGGTCTTGTAGAGG
2641 CAGCTGTCCAGTTTTGGTGCTTGACTCTTGAATAGGAATTGTTAAATGGAAAGATGCTCTGAGGACTAGGTCAAAGCCTG
2721 GTCTTTTTTTTTTTTTTTTTTTTTTTCTTTCTTTTTTGGGCCCTCATAATAAGCATTGTTACTATTGGAAGTTGTTTTCA
2801 CATTCTTTCCAATATTAAATATGTATTTTTTTAAGTAATGATAATATTTTCCAGTGGCTCATTTGGATGAGAACTACCCT
2881 CTATTTTTAATATTAAAACTACATCCAACTCATCATTTAGCCTTTGGTTGTACAGTTGTGTAATGGGCTATGGACTGTTA
2961 CACACCTTACCACCTCTAGGCCTATGTTTTTTCTTTCCCCATATATTCTGATGGGGATAAATACTGTTTTGCCTCTCCCA
3041 TAGGAATGGAATACATTTATTCTAAAATGATCTTTCACAGAAGTAAGAGAGAGGGAAACCTAAATATACCTCTAAATTGT
3121 TTGAAGTTGGTCCCAGCAGCATAAAATGGGTTGGCCCCAAAGGGTTGGAGGGTGGGCTTGGTTATCAGTATTTGTTTTCA
3201 GAATGAGATGGGAGCATCTTTCCTTTGCCACGTGCTTTGTGCTTGATAACATCATGCTTGGTTCAAACGACAACTCAGCA
3281 CAAAGCCTTGAGTATAAATTGTTGGAATCAAAACATCTCATTCTGATGACGTGGTTTAATTTTTTAATTTTTTTTTTTAA
3361 TAGGGGTGGGAGGGAGGGTACTTTGCCCCAGAAGGGAGGGTGTCTGCACTAAGGATTTAGAAACACTTTGGAAGCTCATA
3441 ACCTCATCAGAAACTGCCTTTAGCCACACTCCTGACCTTCTAGATGAGTAACAAAAAAATGAAATAAGTTCTTGGAAATT
3521 AAGCCATTTATTTTAATTTGCTATTTTTTTCAATGTTCTAGGTATCTTTAAATTTGTTATTGTGGAATCATTTTCCTGCC
3601 AGATACCTTTATCAAAATTATTGGCCTCATGAGAGCTGAAGTAAGTCAGCTTTTTGGTGAACTTTAGTGGACTTCTGTGA
3681 GATTGTAGTTGTACTTTGTATCTCTAAATCTAAAGATAGTTTTTTAAAACTCCCAAAGAAAATCTGCTCTCCTTTCTGAT
3761 CTAAAAACTCATCTTTGGGGTAAAGAGTTAAGTGTCCAAAGGTTGTCACAGTTCATGAGGTCAGAGGGAGCTAGCCTGGC
3841 ACCTGGACTCTGCCCATCCACAGCTGACAGATTCCAACAGAAGTGTATTTAAATTCTCCAGTAGACAATGCTGGGTAAGG
3921 GAGGGGGTAGGGCTGGGTTATTAAGATACAGGCTGCTGTATTTTACATTGGTTGTGTGGGAAGGGGAGCCTGGAGAAAAC
4001 AAAGTCACTATTCCCTTTTTTGAAACAGGAAAAAAAATTATTTTTTGTTCAGTAAAAATGGTAGAGAATTCCAATGTCCC
4081 TAGCCACAAGGGACCAGTTCCACTGAGAAGTGAACAGTGGGAACTCAAAATTTCAGAAACATTGGGGGAAGGGAAAATTG
4161 GCTTTCTCTTAATTGGCAGATGTTCCAGTGGGGGGGGGGGGGGCTCTGTTTTTGTTGGGATGTGTTATGTTGTATGTACG
4241 CATATATGGACCGGAGTCTGCTGAGTTTATAAGGTTCCAAAAATATGGTAAAATCTTGGTTTTTGTTAATTTATCTCAAT
4321 AAAAGCCCACTGGAACTCCAAAAAAAAAAAAAAAAAAAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1 
miRNA  3' aguugccCUCACUAGCACAGUAa 5'
                 |||||:  ||||||| 
Target 5' ttctattGAGTGGCAGTGTCATt 3'
 1431 - 1453 160.00 -18.30
2 
miRNA  3' aguugcccuCACUAGCACAGUAa 5'
                   | ||| ||||:|| 
Target 5' gtttttgttGGGAT-GTGTTATg 3'
 4208 - 4229 133.00 -12.10
3 
miRNA  3' agUUGCCCUCAC---UAG------CACAGUaa 5'
            :::||||| |   ||:      ||||||  
Target 5' ggGGTGGGAGAGGGAATTTAAAAGGTGTCAac 3'
 2297 - 2328 131.00 -16.42
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN6531346 112 COSMIC
COSN8734160 445 COSMIC
COSN15456263 819 COSMIC
COSN5257245 861 COSMIC
COSN21291773 985 COSMIC
COSN25719409 1417 COSMIC
COSN22490233 1535 COSMIC
COSN10079036 1966 COSMIC
COSN1515856 1969 COSMIC
COSN25237890 2505 COSMIC
COSN202479 2545 COSMIC
COSN19771069 2638 COSMIC
COSN28757877 2658 COSMIC
COSN26509159 2821 COSMIC
COSN30543685 2902 COSMIC
COSN8640951 2963 COSMIC
COSN28742734 2975 COSMIC
COSN20092434 2995 COSMIC
COSN26563415 2998 COSMIC
COSN15383900 3420 COSMIC
COSN5896528 3437 COSMIC
COSN20108828 3530 COSMIC
COSN20108823 3594 COSMIC
COSN6988224 3643 COSMIC
COSN14586803 3645 COSMIC
COSN17796349 3656 COSMIC
COSN14597979 3658 COSMIC
COSN23553719 3691 COSMIC
COSN32057471 3794 COSMIC
COSN20092433 3802 COSMIC
COSN31588807 3830 COSMIC
COSN27112053 3903 COSMIC
COSN23987602 3954 COSMIC
COSN21173554 4304 COSMIC
COSN8734159 4330 COSMIC
COSN31960698 4380 COSMIC
COSN28787003 4384 COSMIC
COSN31545866 4506 COSMIC
COSN31555002 4514 COSMIC
COSN20108820 4556 COSMIC
COSN31593308 4689 COSMIC
COSN28818783 4724 COSMIC
COSN31539454 4766 COSMIC
COSN31555199 4915 COSMIC
COSN29372239 5013 COSMIC
COSN31564859 5024 COSMIC
COSN16470776 5033 COSMIC
COSN31603025 5114 COSMIC
COSN17491145 5354 COSMIC
COSN17491938 5358 COSMIC
COSN15660460 5364 COSMIC
COSN5257244 5612 COSMIC
COSN1515855 5643 COSMIC
COSN8734158 5974 COSMIC
COSN21081294 6057 COSMIC
COSN23848086 6111 COSMIC
COSN10079035 6250 COSMIC
COSN29950570 6307 COSMIC
COSN1515854 6354 COSMIC
COSN20108810 6797 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs781846171 1 dbSNP
rs1355658073 2 dbSNP
rs200460781 4 dbSNP
rs782698158 5 dbSNP
rs782449121 6 dbSNP
rs533868092 11 dbSNP
rs782808001 21 dbSNP
rs782113918 26 dbSNP
rs75011565 33 dbSNP
rs782097112 34 dbSNP
rs1340228897 37 dbSNP
rs781919086 44 dbSNP
rs554519911 56 dbSNP
rs879951325 63 dbSNP
rs1273757199 65 dbSNP
rs1311652525 68 dbSNP
rs782662783 73 dbSNP
rs1207998713 76 dbSNP
rs1461654942 78 dbSNP
rs1187624533 81 dbSNP
rs1245831367 93 dbSNP
rs1450893001 96 dbSNP
rs1026193354 98 dbSNP
rs1186713374 104 dbSNP
rs782475781 107 dbSNP
rs1412247168 118 dbSNP
rs750528904 119 dbSNP
rs1174655257 124 dbSNP
rs898804403 128 dbSNP
rs781839467 137 dbSNP
rs187039263 138 dbSNP
rs531475859 139 dbSNP
rs1363322527 146 dbSNP
rs568373089 147 dbSNP
rs765218472 148 dbSNP
rs1057236869 150 dbSNP
rs1217546941 151 dbSNP
rs1264934798 151 dbSNP
rs1324115521 152 dbSNP
rs1207901873 157 dbSNP
rs1265966870 157 dbSNP
rs1448495515 158 dbSNP
rs1216132542 161 dbSNP
rs1245764425 162 dbSNP
rs1476756722 166 dbSNP
rs938812341 167 dbSNP
rs550051651 172 dbSNP
rs1432105362 173 dbSNP
rs564025814 178 dbSNP
rs1159039570 194 dbSNP
rs1386976064 194 dbSNP
rs1041943033 197 dbSNP
rs1319307295 199 dbSNP
rs781885391 199 dbSNP
rs1349451491 201 dbSNP
rs947401680 206 dbSNP
rs914558540 210 dbSNP
rs183156796 215 dbSNP
rs1346106749 216 dbSNP
rs191402845 217 dbSNP
rs1286366458 225 dbSNP
rs912619036 230 dbSNP
rs1205432567 232 dbSNP
rs1288715400 234 dbSNP
rs1449463407 236 dbSNP
rs1224108570 242 dbSNP
rs987307853 248 dbSNP
rs954506272 249 dbSNP
rs371756356 252 dbSNP
rs1269022122 253 dbSNP
rs570691149 256 dbSNP
rs1491083486 277 dbSNP
rs370755973 278 dbSNP
rs1182168085 279 dbSNP
rs1026664768 288 dbSNP
rs1362568523 290 dbSNP
rs1471366114 291 dbSNP
rs187683096 292 dbSNP
rs782800724 293 dbSNP
rs1015929393 299 dbSNP
rs782738662 300 dbSNP
rs1305155875 304 dbSNP
rs761779491 319 dbSNP
rs545870363 327 dbSNP
rs894231783 331 dbSNP
rs1306112289 336 dbSNP
rs1337396447 337 dbSNP
rs1239527546 347 dbSNP
rs1247783804 348 dbSNP
rs1353950908 348 dbSNP
rs527747499 348 dbSNP
rs1292037106 350 dbSNP
rs1340934047 351 dbSNP
rs1035378621 355 dbSNP
rs1249051433 357 dbSNP
rs1183026510 358 dbSNP
rs1237309113 365 dbSNP
rs1443148931 370 dbSNP
rs1003008981 371 dbSNP
rs1165776344 377 dbSNP
rs1386020055 379 dbSNP
rs527752602 380 dbSNP
rs1166177608 383 dbSNP
rs1398580614 384 dbSNP
rs1391931767 391 dbSNP
rs1333401114 395 dbSNP
rs1042384238 398 dbSNP
rs1315323257 402 dbSNP
rs1340952116 410 dbSNP
rs1225574192 414 dbSNP
rs947659478 420 dbSNP
rs1339439781 421 dbSNP
rs1196937012 423 dbSNP
rs893158339 426 dbSNP
rs1039718408 435 dbSNP
rs942641045 438 dbSNP
rs879949166 447 dbSNP
rs1449043662 451 dbSNP
rs1191259151 452 dbSNP
rs912671327 461 dbSNP
rs1374908470 463 dbSNP
rs1462552656 471 dbSNP
rs1171997357 472 dbSNP
rs1403737716 480 dbSNP
rs1337094764 490 dbSNP
rs1364047662 497 dbSNP
rs1051154208 499 dbSNP
rs1432503787 500 dbSNP
rs144879537 500 dbSNP
rs11217013 502 dbSNP
rs919079432 506 dbSNP
rs1321970581 513 dbSNP
rs972430503 524 dbSNP
rs1205998718 534 dbSNP
rs1264181407 541 dbSNP
rs1464709645 543 dbSNP
rs530028843 544 dbSNP
rs868978981 545 dbSNP
rs1429207404 557 dbSNP
rs117136597 560 dbSNP
rs1427146031 561 dbSNP
rs544493465 567 dbSNP
rs1481354902 568 dbSNP
rs763933316 568 dbSNP
rs1387698770 571 dbSNP
rs991132649 573 dbSNP
rs1451342686 577 dbSNP
rs1290270752 579 dbSNP
rs545036182 582 dbSNP
rs1385152895 583 dbSNP
rs577141128 586 dbSNP
rs1280759681 588 dbSNP
rs1346808252 590 dbSNP
rs1284465549 591 dbSNP
rs558682382 591 dbSNP
rs1035430269 592 dbSNP
rs1002558668 594 dbSNP
rs1237253259 597 dbSNP
rs1262733630 597 dbSNP
rs1486290686 599 dbSNP
rs1209352578 609 dbSNP
rs1266914649 611 dbSNP
rs1200132445 612 dbSNP
rs1490855196 612 dbSNP
rs1411055060 618 dbSNP
rs1417095134 624 dbSNP
rs1160958141 631 dbSNP
rs967987980 636 dbSNP
rs1457126522 637 dbSNP
rs782724983 638 dbSNP
rs539973615 645 dbSNP
rs1366957293 646 dbSNP
rs1405021834 648 dbSNP
rs1304288574 653 dbSNP
rs581062 654 dbSNP
rs1012127731 655 dbSNP
rs1309557377 661 dbSNP
rs1317863910 663 dbSNP
rs1244401845 664 dbSNP
rs554275759 665 dbSNP
rs1361767530 666 dbSNP
rs536285667 674 dbSNP
rs568510349 679 dbSNP
rs556468572 680 dbSNP
rs1178847242 687 dbSNP
rs1251031070 689 dbSNP
rs1423012163 694 dbSNP
rs1161354066 698 dbSNP
rs891120486 699 dbSNP
rs1051205984 700 dbSNP
rs930074633 707 dbSNP
rs919119158 709 dbSNP
rs1036200839 712 dbSNP
rs553853333 714 dbSNP
rs1374582766 716 dbSNP
rs1452369456 718 dbSNP
rs1313203259 723 dbSNP
rs1385200152 724 dbSNP
rs1246844091 729 dbSNP
rs1272429582 735 dbSNP
rs909143339 739 dbSNP
rs1251809143 744 dbSNP
rs538134225 747 dbSNP
rs1181464784 755 dbSNP
rs1244623232 756 dbSNP
rs1444826549 775 dbSNP
rs1187513101 783 dbSNP
rs1416834223 784 dbSNP
rs1411143023 786 dbSNP
rs570727778 798 dbSNP
rs958387580 800 dbSNP
rs1355558284 806 dbSNP
rs928298933 816 dbSNP
rs782096606 821 dbSNP
rs1335092223 825 dbSNP
rs981188680 833 dbSNP
rs1453715623 834 dbSNP
rs552711873 835 dbSNP
rs967159822 841 dbSNP
rs527787962 842 dbSNP
rs566918835 845 dbSNP
rs1020416763 846 dbSNP
rs1011767170 847 dbSNP
rs182766431 852 dbSNP
rs1296227382 855 dbSNP
rs957744585 857 dbSNP
rs191090086 861 dbSNP
rs141892015 869 dbSNP
rs775179316 872 dbSNP
rs1214705526 873 dbSNP
rs1240000003 874 dbSNP
rs1476112186 880 dbSNP
rs1186541265 884 dbSNP
rs1420886193 891 dbSNP
rs1480419213 893 dbSNP
rs1174874350 894 dbSNP
rs1431969130 895 dbSNP
rs1470502526 896 dbSNP
rs1317910490 898 dbSNP
rs1343594105 899 dbSNP
rs1433010948 902 dbSNP
rs1289486005 914 dbSNP
rs1344934329 915 dbSNP
rs1221667609 919 dbSNP
rs186345071 920 dbSNP
rs1285100650 928 dbSNP
rs1324090024 934 dbSNP
rs1051087538 941 dbSNP
rs994535866 942 dbSNP
rs1281718757 948 dbSNP
rs897256513 954 dbSNP
rs1216025457 955 dbSNP
rs1267615375 963 dbSNP
rs556257867 964 dbSNP
rs147950392 969 dbSNP
rs887592160 973 dbSNP
rs532418122 990 dbSNP
rs1158305222 994 dbSNP
rs937249964 996 dbSNP
rs564934780 997 dbSNP
rs540381515 1003 dbSNP
rs1365099951 1007 dbSNP
rs928518560 1008 dbSNP
rs1403178208 1010 dbSNP
rs1304886077 1016 dbSNP
rs1346009165 1025 dbSNP
rs981135712 1033 dbSNP
rs1277594912 1034 dbSNP
rs1352542276 1038 dbSNP
rs1224046732 1045 dbSNP
rs1290574230 1049 dbSNP
rs1356648396 1066 dbSNP
rs1223997931 1068 dbSNP
rs771672435 1070 dbSNP
rs1271708517 1074 dbSNP
rs1452653903 1075 dbSNP
rs1181685317 1077 dbSNP
rs945682406 1078 dbSNP
rs912995611 1079 dbSNP
rs572942429 1080 dbSNP
rs990294935 1083 dbSNP
rs561083283 1084 dbSNP
rs781990695 1085 dbSNP
rs1366235822 1086 dbSNP
rs1409350258 1089 dbSNP
rs542293467 1094 dbSNP
rs955617324 1122 dbSNP
rs1029896239 1123 dbSNP
rs1380057006 1127 dbSNP
rs181606647 1131 dbSNP
rs556505533 1132 dbSNP
rs1291921859 1135 dbSNP
rs1017042293 1139 dbSNP
rs1006045184 1141 dbSNP
rs1271504431 1147 dbSNP
rs887644582 1147 dbSNP
rs538171166 1152 dbSNP
rs937134059 1153 dbSNP
rs371317197 1159 dbSNP
rs1475121408 1163 dbSNP
rs546393 1171 dbSNP
rs1410345177 1180 dbSNP
rs1335791799 1184 dbSNP
rs1403596000 1184 dbSNP
rs1454292991 1188 dbSNP
rs945761950 1191 dbSNP
rs1325414289 1193 dbSNP
rs1224532032 1201 dbSNP
rs1268950578 1202 dbSNP
rs1342029167 1206 dbSNP
rs1199698316 1209 dbSNP
rs912873776 1211 dbSNP
rs1460247333 1212 dbSNP
rs534448129 1213 dbSNP
rs989955279 1217 dbSNP
rs1446514484 1218 dbSNP
rs566951555 1222 dbSNP
rs1191052271 1224 dbSNP
rs935730180 1225 dbSNP
rs555763801 1226 dbSNP
rs537039832 1229 dbSNP
rs955495717 1231 dbSNP
rs142527115 1235 dbSNP
rs1383727227 1237 dbSNP
rs1380053042 1239 dbSNP
rs1319674518 1247 dbSNP
rs1326480631 1252 dbSNP
rs1219841708 1253 dbSNP
rs555559374 1264 dbSNP
rs570178659 1265 dbSNP
rs1256833861 1268 dbSNP
rs1485641750 1269 dbSNP
rs1203581984 1274 dbSNP
rs1264009855 1277 dbSNP
rs1488651560 1278 dbSNP
rs961438117 1280 dbSNP
rs1198690198 1281 dbSNP
rs1266604687 1283 dbSNP
rs1481305622 1284 dbSNP
rs1362897613 1286 dbSNP
rs1451231910 1288 dbSNP
rs748603959 1291 dbSNP
rs1159923171 1294 dbSNP
rs1360681010 1307 dbSNP
rs190799794 1309 dbSNP
rs1303089568 1310 dbSNP
rs539505796 1324 dbSNP
rs959449754 1327 dbSNP
rs1302458188 1328 dbSNP
rs1316672422 1335 dbSNP
rs868927469 1338 dbSNP
rs1237231340 1339 dbSNP
rs532457143 1343 dbSNP
rs1354508863 1345 dbSNP
rs1221773812 1349 dbSNP
rs1289536089 1354 dbSNP
rs1490809596 1355 dbSNP
rs1191675062 1372 dbSNP
rs1249623052 1373 dbSNP
rs1161089353 1376 dbSNP
rs1183537362 1376 dbSNP
rs1294619381 1376 dbSNP
rs1366859723 1376 dbSNP
rs1377868906 1376 dbSNP
rs1380466716 1376 dbSNP
rs1394368573 1376 dbSNP
rs1417075145 1376 dbSNP
rs1459940785 1376 dbSNP
rs34191912 1376 dbSNP
rs570724106 1376 dbSNP
rs1245383185 1380 dbSNP
rs1289737649 1381 dbSNP
rs1361656862 1383 dbSNP
rs1222298087 1386 dbSNP
rs1250622112 1388 dbSNP
rs1479541021 1391 dbSNP
rs1197278752 1394 dbSNP
rs1033704129 1396 dbSNP
rs1001338947 1397 dbSNP
rs1443673200 1398 dbSNP
rs1181344348 1400 dbSNP
rs907034257 1401 dbSNP
rs1045675126 1403 dbSNP
rs1423886084 1404 dbSNP
rs1010568150 1411 dbSNP
rs891495087 1414 dbSNP
rs1354405697 1416 dbSNP
rs1054536784 1417 dbSNP
rs565224068 1420 dbSNP
rs935614219 1422 dbSNP
rs910987744 1423 dbSNP
rs1333746314 1431 dbSNP
rs1049492746 1441 dbSNP
rs1401445827 1446 dbSNP
rs781683555 1459 dbSNP
rs1381433281 1462 dbSNP
rs1228900930 1463 dbSNP
rs934169979 1471 dbSNP
rs79653015 1481 dbSNP
rs1294795350 1486 dbSNP
rs782201383 1488 dbSNP
rs1305652380 1492 dbSNP
rs755301432 1493 dbSNP
rs1258520947 1494 dbSNP
rs868994706 1494 dbSNP
rs782664151 1503 dbSNP
rs1201462128 1510 dbSNP
rs565561771 1510 dbSNP
rs546575026 1526 dbSNP
rs910093288 1527 dbSNP
rs1185381957 1530 dbSNP
rs528316808 1532 dbSNP
rs1419468978 1534 dbSNP
rs984101989 1535 dbSNP
rs959340441 1538 dbSNP
rs1033756588 1539 dbSNP
rs879990074 1545 dbSNP
rs1361057989 1548 dbSNP
rs1448885284 1553 dbSNP
rs1288404999 1554 dbSNP
rs1359928572 1561 dbSNP
rs1401828164 1563 dbSNP
rs1278758515 1569 dbSNP
rs1322566305 1576 dbSNP
rs1221402487 1582 dbSNP
rs1280322515 1584 dbSNP
rs2508563 1590 dbSNP
rs2508562 1591 dbSNP
rs35907809 1591 dbSNP
rs560911216 1593 dbSNP
rs868929375 1596 dbSNP
rs1239913325 1598 dbSNP
rs1488978812 1599 dbSNP
rs1196472152 1600 dbSNP
rs1264453559 1602 dbSNP
rs868917185 1604 dbSNP
rs1174674168 1610 dbSNP
rs1024552027 1614 dbSNP
rs1415306316 1615 dbSNP
rs1158637446 1618 dbSNP
rs1343577801 1621 dbSNP
rs1401851832 1622 dbSNP
rs1298748663 1634 dbSNP
rs1344745271 1635 dbSNP
rs1010039330 1638 dbSNP
rs780306859 1644 dbSNP
rs758617386 1645 dbSNP
rs1054349659 1646 dbSNP
rs1281695919 1650 dbSNP
rs1355241440 1653 dbSNP
rs1216636147 1661 dbSNP
rs1287398901 1671 dbSNP
rs1490340322 1673 dbSNP
rs1197342977 1681 dbSNP
rs1248877489 1683 dbSNP
rs999892011 1685 dbSNP
rs1478557337 1687 dbSNP
rs542330434 1699 dbSNP
rs1405994511 1700 dbSNP
rs1421618613 1706 dbSNP
rs782657198 1710 dbSNP
rs1159288762 1715 dbSNP
rs151066022 1716 dbSNP
rs535516714 1724 dbSNP
rs562949773 1725 dbSNP
rs1350325416 1726 dbSNP
rs1441133683 1728 dbSNP
rs1037606151 1729 dbSNP
rs1378602261 1736 dbSNP
rs201237884 1737 dbSNP
rs1313800640 1739 dbSNP
rs1356623409 1744 dbSNP
rs1208649358 1746 dbSNP
rs1292564391 1759 dbSNP
rs940177124 1760 dbSNP
rs1204206867 1762 dbSNP
rs1236617352 1768 dbSNP
rs1441820797 1776 dbSNP
rs910140531 1778 dbSNP
rs142846331 1780 dbSNP
rs1164939029 1781 dbSNP
rs1384752251 1781 dbSNP
rs1391299640 1781 dbSNP
rs571662633 1781 dbSNP
rs1409183401 1785 dbSNP
rs1326648416 1790 dbSNP
rs1402167935 1796 dbSNP
rs577558449 1806 dbSNP
rs1335665494 1808 dbSNP
rs1379947573 1810 dbSNP
rs1246276493 1811 dbSNP
rs1357623702 1812 dbSNP
rs1214465947 1815 dbSNP
rs377609070 1816 dbSNP
rs926624499 1820 dbSNP
rs1459360937 1825 dbSNP
rs982196599 1828 dbSNP
rs971229377 1844 dbSNP
rs1242694384 1846 dbSNP
rs1440790240 1853 dbSNP
rs1189656421 1864 dbSNP
rs1369096589 1876 dbSNP
rs1475069855 1878 dbSNP
rs1020999345 1888 dbSNP
rs1168430913 1893 dbSNP
rs186956592 1894 dbSNP
rs955885452 1896 dbSNP
rs1033366619 1897 dbSNP
rs1175280249 1898 dbSNP
rs1403384310 1903 dbSNP
rs1000110169 1909 dbSNP
rs781899982 1909 dbSNP
rs1334292320 1917 dbSNP
rs1325329585 1918 dbSNP
rs1430721388 1922 dbSNP
rs889489034 1926 dbSNP
rs573397706 1928 dbSNP
rs1320456281 1932 dbSNP
rs1219573725 1933 dbSNP
rs1262783820 1937 dbSNP
rs1343182851 1941 dbSNP
rs997811134 1942 dbSNP
rs782683517 1944 dbSNP
rs148513852 1948 dbSNP
rs1191421120 1949 dbSNP
rs1265174150 1954 dbSNP
rs1478038210 1954 dbSNP
rs1175395808 1957 dbSNP
rs1375690964 1974 dbSNP
rs1467306200 1975 dbSNP
rs59295871 1978 dbSNP
rs551084776 1980 dbSNP
rs1383705244 1990 dbSNP
rs1417249256 1995 dbSNP
rs78718948 1996 dbSNP
rs1296906746 2004 dbSNP
rs1342887293 2011 dbSNP
rs1401105984 2013 dbSNP
rs181390377 2017 dbSNP
rs1329694413 2023 dbSNP
rs1235784454 2031 dbSNP
rs1256740935 2035 dbSNP
rs1350062237 2035 dbSNP
rs1048668371 2036 dbSNP
rs938259891 2038 dbSNP
rs926843556 2039 dbSNP
rs1198575325 2043 dbSNP
rs1265078023 2052 dbSNP
rs1434686157 2054 dbSNP
rs1199139427 2059 dbSNP
rs1362804687 2064 dbSNP
rs1437306245 2074 dbSNP
rs1159971563 2078 dbSNP
rs982081024 2078 dbSNP
rs949391246 2079 dbSNP
rs1420894825 2080 dbSNP
rs913988226 2085 dbSNP
rs1293452003 2089 dbSNP
rs781911895 2092 dbSNP
rs1389030040 2093 dbSNP
rs1388828773 2094 dbSNP
rs1302273733 2095 dbSNP
rs1376385746 2096 dbSNP
rs782690291 2098 dbSNP
rs782771724 2110 dbSNP
rs1221746736 2115 dbSNP
rs1263539254 2122 dbSNP
rs144697235 2124 dbSNP
rs1210166385 2127 dbSNP
rs546907983 2135 dbSNP
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rs528342019 2156 dbSNP
rs782133534 2164 dbSNP
rs998270641 2165 dbSNP
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rs1015785330 2171 dbSNP
rs1294528307 2174 dbSNP
rs548722560 2183 dbSNP
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rs1333614313 2187 dbSNP
rs1003966175 2195 dbSNP
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rs782362668 2214 dbSNP
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rs1173113982 2292 dbSNP
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rs913899217 2371 dbSNP
rs1258340735 2373 dbSNP
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rs978607749 2386 dbSNP
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rs1174210658 2399 dbSNP
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rs921208532 2409 dbSNP
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rs568378541 2427 dbSNP
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rs1312281465 2435 dbSNP
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rs573408569 2478 dbSNP
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rs1002341404 2492 dbSNP
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rs1238938653 2495 dbSNP
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rs1355217531 2498 dbSNP
rs905356913 2500 dbSNP
rs1242952928 2505 dbSNP
rs78678279 2524 dbSNP
rs1451413577 2531 dbSNP
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rs1013829914 2541 dbSNP
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rs1178242919 2547 dbSNP
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rs1441551095 2562 dbSNP
rs1159195528 2571 dbSNP
rs1412947611 2581 dbSNP
rs1403435100 2598 dbSNP
rs892676609 2599 dbSNP
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rs782067625 2611 dbSNP
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rs767346468 2682 dbSNP
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rs114868590 2990 dbSNP
rs1214001463 2990 dbSNP
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rs561597533 2995 dbSNP
rs188552302 2996 dbSNP
rs782606017 2999 dbSNP
rs1367156308 3010 dbSNP
rs139459064 3021 dbSNP
rs1299990422 3022 dbSNP
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rs192769638 3073 dbSNP
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rs480227 3123 dbSNP
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rs1305006239 3210 dbSNP
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rs1321496217 3318 dbSNP
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rs565673910 3502 dbSNP
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rs1373656019 3694 dbSNP
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rs1241842212 3751 dbSNP
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rs1188432416 3771 dbSNP
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rs1220255522 3811 dbSNP
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rs1279472220 3887 dbSNP
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rs879966136 4077 dbSNP
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rs1212785025 4097 dbSNP
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rs1323521936 6896 dbSNP
rs1202310673 6901 dbSNP
rs1281222443 6902 dbSNP
rs1443374002 6907 dbSNP
rs782049151 6915 dbSNP
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rs1194549391 6931 dbSNP
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rs1428657278 6933 dbSNP
rs1479438020 6934 dbSNP
rs3177631 6936 dbSNP
rs938789319 6940 dbSNP
rs781928713 6945 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Article - Hafner M; Landthaler M; Burger L; Khorshid et al.
- Cell, 2010
RNA transcripts are subject to posttranscriptional gene regulation involving hundreds of RNA-binding proteins (RBPs) and microRNA-containing ribonucleoprotein complexes (miRNPs) expressed in a cell-type dependent fashion. We developed a cell-based crosslinking approach to determine at high resolution and transcriptome-wide the binding sites of cellular RBPs and miRNPs. The crosslinked sites are revealed by thymidine to cytidine transitions in the cDNAs prepared from immunopurified RNPs of 4-thiouridine-treated cells. We determined the binding sites and regulatory consequences for several intensely studied RBPs and miRNPs, including PUM2, QKI, IGF2BP1-3, AGO/EIF2C1-4 and TNRC6A-C. Our study revealed that these factors bind thousands of sites containing defined sequence motifs and have distinct preferences for exonic versus intronic or coding versus untranslated transcript regions. The precise mapping of binding sites across the transcriptome will be critical to the interpretation of the rapidly emerging data on genetic variation between individuals and how these variations contribute to complex genetic diseases.
LinkOut: [PMID: 20371350]
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
GSE34608 Pulmonary tuberculosis and sarcoidosis 0.601 2.5e-3 0.493 1.4e-2 20 Click to see details
GSE21687 Ependynoma primary tumors -0.335 3.4e-3 -0.071 2.9e-1 64 Click to see details
GSE19536 Breast cancer 0.171 4.4e-2 0.146 7.4e-2 100 Click to see details
GSE35602 Colorectal cancer stromal tissue 0.272 9.4e-2 0.254 1.1e-1 25 Click to see details
GSE14794 Lymphoblastoid cells 0.138 9.7e-2 0.035 3.7e-1 90 Click to see details
GSE42095 Differentiated embryonic stem cells 0.215 1.6e-1 0.145 2.5e-1 23 Click to see details
GSE19783 ER+ ER+ breast cancer 0.224 1.7e-1 0.299 1.0e-1 20 Click to see details
GSE28260 Renal cortex and medulla -0.251 2.0e-1 -0.126 3.4e-1 13 Click to see details
GSE21032 Prostate cancer 0.087 2.2e-1 0.034 3.8e-1 83 Click to see details
GSE32688 Pancreatic cancer -0.135 2.3e-1 -0.189 1.5e-1 32 Click to see details
GSE19783 ER- ER- breast cancer 0.084 2.3e-1 0.073 2.6e-1 79 Click to see details
GSE21849 B cell lymphoma -0.142 2.3e-1 -0.078 3.4e-1 29 Click to see details
GSE15076 Monocyte-derived dendritic cells 0.278 2.3e-1 0.317 2.0e-1 9 Click to see details
GSE28544 Breast cancer 0.142 2.5e-1 0.371 3.7e-2 24 Click to see details
GSE17306 Multiple myeloma -0.072 3.1e-1 -0.022 4.4e-1 49 Click to see details
GSE38226 Liver fibrosis 0.075 3.7e-1 0.092 3.5e-1 21 Click to see details
GSE38974 Chronic obstructive pulmonary disease 0.061 3.9e-1 -0.074 3.6e-1 25 Click to see details
GSE27834 Pluripotent stem cells -0.069 4.0e-1 -0.059 4.1e-1 16 Click to see details
GSE26953 Aortic valvular endothelial cells -0.036 4.3e-1 -0.135 2.6e-1 24 Click to see details
GSE17498 Multiple myeloma -0.019 4.5e-1 0.118 2.3e-1 40 Click to see details
GSE19350 CNS germ cell tumors 0.014 4.8e-1 -0.168 3.0e-1 12 Click to see details
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
STAD -0.514 0 -0.504 0 32 Click to see details
KIRP -0.311 0.04 -0.440 0.01 32 Click to see details
CESC -0.918 0.13 -1.000 0.5 3 Click to see details
PCPG -0.84 0.18 -0.500 0.33 3 Click to see details
CHOL -0.336 0.19 -0.150 0.35 9 Click to see details
LUSC -0.145 0.19 -0.176 0.15 38 Click to see details
ESCA -0.289 0.19 -0.482 0.07 11 Click to see details
HNSC -0.135 0.2 -0.118 0.23 42 Click to see details
BLCA -0.209 0.2 -0.152 0.27 18 Click to see details
KIRC 0.102 0.2 0.060 0.31 68 Click to see details
UCEC -0.177 0.23 -0.267 0.13 19 Click to see details
LIHC -0.103 0.24 -0.117 0.21 49 Click to see details
LUAD -0.171 0.3 -0.189 0.28 12 Click to see details
PRAD -0.048 0.37 -0.115 0.21 50 Click to see details
KICH -0.066 0.38 -0.055 0.4 25 Click to see details
COAD -0.128 0.38 -0.667 0.04 8 Click to see details
THCA 0.029 0.41 -0.078 0.28 59 Click to see details
PAAD 0.17 0.42 0.400 0.3 4