miRTarBase - #MIRT032111


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pre-miRNA Information
pre-miRNA hsa-let-7d   
Genomic Coordinates chr9: 94178834 - 94178920
Synonyms LET7D, MIRNLET7D, hsa-let-7d, let-7d, MIRLET7D
Description Homo sapiens let-7d stem-loop
Comment The mature sequence shown here represents the most commonly cloned form from large-scale cloning studies .
RNA Secondary Structure
Associated Diseases

Mature miRNA Information
Mature miRNA hsa-let-7d-5p
Sequence 8| AGAGGUAGUAGGUUGCAUAGUU |29
Evidence Experimental
Experiments Cloned
Editing Events in miRNAs
Modification Type Position on miR Chromosome DNA Strand Genomic Position (hg38) List of PMIDs Variant details
A-to-I 3 9 + 94178843 27292188 MiREDiBase
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs1462778813 2 dbSNP
rs1467512593 13 dbSNP
rs1329655735 14 dbSNP
Putative Targets

miRNA Expression profile
Human miRNA Tissue Atlas
miRNAs in Extracellular Vesicles
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol BUB3   
Synonyms BUB3L, hBUB3
Description BUB3, mitotic checkpoint protein
Transcript NM_004725   
Other Transcripts NM_001007793   
Expression
Putative miRNA Targets on BUB3
3'UTR of BUB3
(miRNA target sites are highlighted)		 
>BUB3|NM_004725|3'UTR
   1 CAAGATTTCATTTACTTAAGTGCCATGTTGATGATAATAAAACAATTCGTACTCCCCAATGGTGGATTTATTACTATTAA
  81 AGAAACCAGGGAAAATATTAATTTTAATATTATAACAACCTGAAAATAATGGAAAAGAGGTTTTTGAATTTTTTTTTTTA
 161 AATAAACACCTTCTTAAGTGCATGAGATGGTTTGATGGTTTGCTGCATTAAAGGTATTTGGGCAAACAAAATTGGAGGGC
 241 AAGTGACTGCAGTTTTGAGAATCAGTTTTGACCTTGATGATTTTTTGTTTCCACTGTGGAAATAAATGTTTGTAAATAAG
 321 TGTAATAAAAATCCCTTTGCATTCTTTCTGGACCTTAAATGGTAGAGGAAAAGGCTCGTGAGCCATTTGTTTCTTTTGCT
 401 GGTTATAGTTGCTAATTCTAAAGCTGCTTCAGACTGCTTCATGAGGAGGTTAATCTACAATTAAACAATATTTCCTCTTG
 481 GCCGTCCATTATTTTCTGAAGCAGATGGTTCATCATTTCCTGGGCTGTTAAACAAAGCGAGGTTAAGGTTAGACTCTTGG
 561 GAATCAGCTAGTTTTCAATCTTATTAGGGTGCAGAAGGAAAACTAATAAGAAAACCTCCTAATATCATTTTGTGACTGTA
 641 AACAATTATTTATTAGCAAACAATTGATCCCAGAAGGGCAAATTGTTTGAGTCAGTAATGAGCTGAGAAAAGACAGAGCA
 721 TATCTGTGTATTTGGAAAAATAATTGTAACGTAATTGCAGTGCATTTAGACAGGCATCTATTTGGACCTGTTTCTATCTC
 801 TAAATGAATTTTTGGAAACATTAATGAGGTTTACATATTTCTCTGACATTTATATAGTTCTTATGTCCATTTCAGTTGAC
 881 CAGCCGCTGGTGATTAAAGTTAAAAAGAAAAAAATTATAGTGAGAATGAGATTCATTTCAATGTAATGCACTAAAGCAGA
 961 ACACGAACTTAGCTTGGCCTATTCTAGGTAGTTCCAAATAGTATTTTTGTTGTCAAACTTTAAAATTTATATTAATTTGC
1041 AAATGTATGTCTCTGAGTAGGACTTGGACCTTTCCTGAGATTTATTTTATCCGTGATGTATTTTTTTTAATTCTTTTGAT
1121 ACAGAGAAGGGTCTTTTTTTTTTTAAGTATTTCAGTGAAAACTTGGTGTAAGTCTGAACCCATCTTTTGAAATGTATTTT
1201 CTTCATTGCAGGTCCACCTAATCATCCTGTGAAAGTGGTTTCTCTATGGAAAGCTTTGTTTGCTTCCTACAAATACATGC
1281 TTATTCCTTAAGGGATGTGTTAGAGTTACTGTGGATTTCTCTGTTTTCTGTCTTACAAGAAACTTGTCTATGTACCTTAA
1361 TACTTTGTTTAGGATGAGGAGTCTTTGTGTCCCTGTACAGTAGTCTGACGTATTTCCCCTTCTGTCCCCTAGTAAGCCCA
1441 GTTGCTGTATCTGAACAGTTTGAGCTCTTTTTGTAATATACTCTAAACCTGTTATTTCTGTGCTAATAAACGAGATGCAG
1521 AACCCTTGAATGTTGAAAAAAAAAAAAAAAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1 
miRNA  3' uuGAUACG-UUGGAU---GAUGGAGa 5'
            |||| : :||||:   |||:||| 
Target 5' atCTATTTGGACCTGTTTCTATCTCt 3'
 776 - 801 144.00 -16.20
2 
miRNA  3' uuGA-UACGUUGGA---UGAUGGAGa 5'
            || | || :|:|   |||:|:|| 
Target 5' ttCTAAAGCTGCTTCAGACTGCTTCa 3'
 416 - 441 124.00 -12.10
3 
miRNA  3' uugAUACG----UUGGAUGAUGGAGa 5'
             ||| |    |||||::||::|| 
Target 5' taaTATACTCTAAACCTGTTATTTCt 3'
 1474 - 1499 121.00 -15.70
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN30463029 10 COSMIC
COSN6944687 38 COSMIC
COSN31574443 49 COSMIC
COSN31518440 74 COSMIC
COSN28201244 83 COSMIC
COSN30108720 90 COSMIC
COSN31578043 99 COSMIC
COSN30658364 100 COSMIC
COSN30544749 127 COSMIC
COSN20077159 161 COSMIC
COSN8150496 891 COSMIC
COSN31601608 1028 COSMIC
COSN31479503 1068 COSMIC
COSN31506346 1114 COSMIC
COSN31557945 1114 COSMIC
COSN31513373 1130 COSMIC
COSN20107681 1144 COSMIC
COSN30497257 1145 COSMIC
COSN30117940 1149 COSMIC
COSN8150497 1185 COSMIC
COSN31596749 1193 COSMIC
COSN28759494 1202 COSMIC
COSN31606931 1243 COSMIC
COSN31530724 1245 COSMIC
COSN23677024 1278 COSMIC
COSN31510330 1287 COSMIC
COSN30040669 1304 COSMIC
COSN16606795 1329 COSMIC
COSN30157419 1351 COSMIC
COSN31554102 1411 COSMIC
COSN31581150 1465 COSMIC
COSN22406083 1654 COSMIC
COSN26261230 1873 COSMIC
COSN4712003 2314 COSMIC
COSN19083366 2406 COSMIC
COSN20780836 3147 COSMIC
COSN18908115 3477 COSMIC
COSN6944688 3713 COSMIC
COSN17113665 3816 COSMIC
COSN15428273 3949 COSMIC
COSN24822874 4149 COSMIC
COSN27070233 4373 COSMIC
COSN8919566 4656 COSMIC
COSN25007129 4754 COSMIC
COSN23750366 4864 COSMIC
COSN14441856 5098 COSMIC
COSN6059582 5226 COSMIC
COSN21239393 5590 COSMIC
COSN15721701 5923 COSMIC
COSN24837215 6365 COSMIC
COSN15403939 6399 COSMIC
rs10794599 5921 GWAS
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs1174865266 1 dbSNP
rs1408980860 26 dbSNP
rs756028806 27 dbSNP
rs1317024230 28 dbSNP
rs1342993241 31 dbSNP
rs1432441676 32 dbSNP
rs1419660481 34 dbSNP
rs1270457055 35 dbSNP
rs1366602287 36 dbSNP
rs201333657 37 dbSNP
rs749009869 42 dbSNP
rs201226325 43 dbSNP
rs1490505348 46 dbSNP
rs374733234 49 dbSNP
rs747621370 50 dbSNP
rs1287800344 53 dbSNP
rs1227883433 54 dbSNP
rs995039047 55 dbSNP
rs1352042574 57 dbSNP
rs1350207459 60 dbSNP
rs1299138118 76 dbSNP
rs543848746 77 dbSNP
rs951195366 79 dbSNP
rs562085562 87 dbSNP
rs529436507 88 dbSNP
rs1461458369 94 dbSNP
rs1042139768 95 dbSNP
rs777005250 99 dbSNP
rs1240273628 105 dbSNP
rs771143104 108 dbSNP
rs902226028 113 dbSNP
rs781723991 114 dbSNP
rs1194631150 118 dbSNP
rs1408421212 120 dbSNP
rs1000612064 133 dbSNP
rs547618270 135 dbSNP
rs1053658348 149 dbSNP
rs200759442 149 dbSNP
rs75406601 149 dbSNP
rs965055647 149 dbSNP
rs975315228 149 dbSNP
rs921206630 159 dbSNP
rs566010640 161 dbSNP
rs978653301 164 dbSNP
rs1012201007 170 dbSNP
rs1365932905 170 dbSNP
rs1274730525 177 dbSNP
rs190890741 180 dbSNP
rs1219022456 181 dbSNP
rs934721390 183 dbSNP
rs1024869523 188 dbSNP
rs1395994842 190 dbSNP
rs1246063925 199 dbSNP
rs183393015 209 dbSNP
rs572371579 214 dbSNP
rs1345491804 217 dbSNP
rs570381384 232 dbSNP
rs1412488101 242 dbSNP
rs1044608009 243 dbSNP
rs768573410 247 dbSNP
rs774303415 248 dbSNP
rs1015688671 252 dbSNP
rs1439151012 262 dbSNP
rs1164121674 271 dbSNP
rs746320970 275 dbSNP
rs961795891 297 dbSNP
rs148159262 305 dbSNP
rs141045488 307 dbSNP
rs1164462634 313 dbSNP
rs1485662163 322 dbSNP
rs886626371 335 dbSNP
rs560338669 343 dbSNP
rs1278411453 355 dbSNP
rs1235636908 361 dbSNP
rs1401707675 363 dbSNP
rs539329253 364 dbSNP
rs1373909038 368 dbSNP
rs527569482 372 dbSNP
rs1433628105 376 dbSNP
rs912764627 379 dbSNP
rs1290215829 383 dbSNP
rs1445395303 384 dbSNP
rs1174077235 390 dbSNP
rs1329885676 390 dbSNP
rs1019404271 395 dbSNP
rs879107527 398 dbSNP
rs1388319819 400 dbSNP
rs1167886422 403 dbSNP
rs1374088557 406 dbSNP
rs943726135 408 dbSNP
rs535625670 424 dbSNP
rs978195158 430 dbSNP
rs1440829427 432 dbSNP
rs1482428637 437 dbSNP
rs923627889 440 dbSNP
rs1284425033 450 dbSNP
rs1357951419 461 dbSNP
rs936428447 461 dbSNP
rs374121772 469 dbSNP
rs1350514161 470 dbSNP
rs965025176 471 dbSNP
rs1228345571 476 dbSNP
rs996554911 482 dbSNP
rs1288831687 483 dbSNP
rs1393905269 484 dbSNP
rs1053521535 485 dbSNP
rs1313256689 486 dbSNP
rs1416321373 488 dbSNP
rs894995005 506 dbSNP
rs777038313 509 dbSNP
rs968632520 515 dbSNP
rs1462469897 526 dbSNP
rs979091214 530 dbSNP
rs1046312635 539 dbSNP
rs1417342245 540 dbSNP
rs1188942603 554 dbSNP
rs1486831737 557 dbSNP
rs1250102591 558 dbSNP
rs369149974 560 dbSNP
rs553983272 564 dbSNP
rs1188268783 569 dbSNP
rs572286922 585 dbSNP
rs992910655 596 dbSNP
rs1242064365 611 dbSNP
rs1333529963 612 dbSNP
rs1471911854 615 dbSNP
rs1293463949 616 dbSNP
rs1234771242 619 dbSNP
rs546078340 620 dbSNP
rs1181468309 622 dbSNP
rs917353393 637 dbSNP
rs1004797223 639 dbSNP
rs186611999 640 dbSNP
rs576379747 647 dbSNP
rs1424855694 652 dbSNP
rs1467502286 656 dbSNP
rs112003546 664 dbSNP
rs897137468 671 dbSNP
rs567462989 672 dbSNP
rs1165878458 673 dbSNP
rs1476330899 683 dbSNP
rs1410182051 689 dbSNP
rs1027001522 703 dbSNP
rs1181609368 705 dbSNP
rs930871269 708 dbSNP
rs1253204422 719 dbSNP
rs1208591456 721 dbSNP
rs954211929 723 dbSNP
rs1467599077 729 dbSNP
rs1048461487 732 dbSNP
rs1446729395 737 dbSNP
rs562196354 751 dbSNP
rs146851508 752 dbSNP
rs752784439 755 dbSNP
rs1326710306 756 dbSNP
rs1278735681 757 dbSNP
rs1239421218 771 dbSNP
rs758840135 775 dbSNP
rs1337329917 781 dbSNP
rs1341925278 788 dbSNP
rs764640095 797 dbSNP
rs1370294709 798 dbSNP
rs773456481 804 dbSNP
rs1292269300 815 dbSNP
rs966054165 820 dbSNP
rs978348527 830 dbSNP
rs923630279 831 dbSNP
rs936294324 836 dbSNP
rs1158215939 848 dbSNP
rs1386808317 848 dbSNP
rs989248084 849 dbSNP
rs531287484 855 dbSNP
rs1454261579 856 dbSNP
rs1201142579 862 dbSNP
rs1027954917 865 dbSNP
rs947876478 868 dbSNP
rs1463164591 873 dbSNP
rs1283052698 881 dbSNP
rs1046696471 884 dbSNP
rs1280880192 885 dbSNP
rs1254071982 886 dbSNP
rs1233442498 893 dbSNP
rs1348572327 896 dbSNP
rs1440753957 908 dbSNP
rs1443105334 909 dbSNP
rs1324775770 912 dbSNP
rs906365512 918 dbSNP
rs1383020019 923 dbSNP
rs968806807 927 dbSNP
rs1171253501 928 dbSNP
rs541148780 932 dbSNP
rs559484307 935 dbSNP
rs1036251588 942 dbSNP
rs1176098001 946 dbSNP
rs1447084002 948 dbSNP
rs1032032276 951 dbSNP
rs182777521 956 dbSNP
rs1448417487 958 dbSNP
rs995425574 963 dbSNP
rs557720266 965 dbSNP
rs570294326 966 dbSNP
rs1282306183 968 dbSNP
rs1226117619 982 dbSNP
rs1337484131 987 dbSNP
rs1269713905 991 dbSNP
rs531321327 995 dbSNP
rs1328491113 1001 dbSNP
rs549543007 1005 dbSNP
rs1414488363 1013 dbSNP
rs980158578 1017 dbSNP
rs1020225087 1026 dbSNP
rs757657854 1030 dbSNP
rs920567506 1036 dbSNP
rs1360704081 1041 dbSNP
rs766731538 1045 dbSNP
rs1000200858 1046 dbSNP
rs7095154 1052 dbSNP
rs1276024803 1054 dbSNP
rs773974563 1057 dbSNP
rs1325611703 1062 dbSNP
rs1366277666 1073 dbSNP
rs745540406 1080 dbSNP
rs989112477 1092 dbSNP
rs916244291 1093 dbSNP
rs571356622 1094 dbSNP
rs1437227237 1096 dbSNP
rs1343048584 1097 dbSNP
rs1196387197 1099 dbSNP
rs1341578544 1101 dbSNP
rs538788291 1101 dbSNP
rs1287023017 1109 dbSNP
rs944887630 1115 dbSNP
rs927818048 1126 dbSNP
rs940510360 1131 dbSNP
rs879050212 1133 dbSNP
rs1354536622 1134 dbSNP
rs1391677614 1134 dbSNP
rs34736387 1134 dbSNP
rs36090124 1134 dbSNP
rs397845492 1134 dbSNP
rs398097262 1134 dbSNP
rs550722372 1134 dbSNP
rs569112571 1134 dbSNP
rs796211287 1134 dbSNP
rs1163706841 1145 dbSNP
rs1489364151 1145 dbSNP
rs1036689439 1146 dbSNP
rs1262967531 1147 dbSNP
rs1452526329 1149 dbSNP
rs1201721034 1150 dbSNP
rs1040533623 1155 dbSNP
rs754827243 1156 dbSNP
rs1445410938 1165 dbSNP
rs766350866 1169 dbSNP
rs771500312 1170 dbSNP
rs1179833091 1172 dbSNP
rs558050542 1173 dbSNP
rs1469441905 1174 dbSNP
rs747494124 1178 dbSNP
rs1197731284 1183 dbSNP
rs202101285 1185 dbSNP
rs771328391 1187 dbSNP
rs776894806 1199 dbSNP
rs1260345609 1201 dbSNP
rs759900033 1206 dbSNP
rs765391664 1210 dbSNP
rs1233331392 1212 dbSNP
rs775715440 1213 dbSNP
rs763193404 1216 dbSNP
rs1364593192 1217 dbSNP
rs764258230 1219 dbSNP
rs1474797147 1221 dbSNP
rs750432366 1222 dbSNP
rs756086719 1229 dbSNP
rs368167736 1234 dbSNP
rs14634 1239 dbSNP
rs766299601 1245 dbSNP
rs755382311 1247 dbSNP
rs753597737 1250 dbSNP
rs1225569703 1255 dbSNP
rs1213280307 1267 dbSNP
rs372160983 1270 dbSNP
rs1490249006 1272 dbSNP
rs1220622972 1277 dbSNP
rs778430582 1278 dbSNP
rs188288241 1279 dbSNP
rs1007413760 1293 dbSNP
rs553915820 1297 dbSNP
rs1280595929 1305 dbSNP
rs1041106071 1308 dbSNP
rs1000290886 1335 dbSNP
rs192785062 1337 dbSNP
rs1396136009 1338 dbSNP
rs1384052321 1339 dbSNP
rs1399849681 1347 dbSNP
rs1408483965 1349 dbSNP
rs1178850142 1351 dbSNP
rs999661447 1352 dbSNP
rs1452562545 1360 dbSNP
rs1251205715 1364 dbSNP
rs1387136421 1374 dbSNP
rs1193157609 1378 dbSNP
rs1014133548 1382 dbSNP
rs1031266881 1392 dbSNP
rs539299654 1393 dbSNP
rs969882601 1401 dbSNP
rs1325446632 1403 dbSNP
rs1213939933 1410 dbSNP
rs1316656890 1420 dbSNP
rs558020639 1427 dbSNP
rs1440287608 1428 dbSNP
rs1310019214 1433 dbSNP
rs748775104 1440 dbSNP
rs768038353 1445 dbSNP
rs969031525 1448 dbSNP
rs1440931638 1451 dbSNP
rs536537724 1451 dbSNP
rs1211945768 1452 dbSNP
rs576293332 1456 dbSNP
rs767432233 1462 dbSNP
rs982285680 1463 dbSNP
rs927694682 1468 dbSNP
rs962192078 1472 dbSNP
rs543778311 1475 dbSNP
rs1394327298 1476 dbSNP
rs920425253 1478 dbSNP
rs1174195306 1484 dbSNP
rs1179780491 1484 dbSNP
rs1238313439 1489 dbSNP
rs1427388658 1496 dbSNP
rs930585723 1506 dbSNP
rs907879972 1512 dbSNP
rs1243041755 1513 dbSNP
rs1219333570 1520 dbSNP
rs1362795907 1522 dbSNP
rs3168039 1529 dbSNP
rs1050291401 1536 dbSNP
rs1484903292 1554 dbSNP
rs555447529 1555 dbSNP
rs573712284 1557 dbSNP
rs1164725802 1561 dbSNP
rs1349383458 1565 dbSNP
rs944904179 1567 dbSNP
rs911234142 1570 dbSNP
rs1388528483 1580 dbSNP
rs1362308192 1584 dbSNP
rs1290268393 1585 dbSNP
rs942694315 1599 dbSNP
rs541081485 1600 dbSNP
rs748071400 1610 dbSNP
rs1436547011 1617 dbSNP
rs559468018 1618 dbSNP
rs1041530498 1622 dbSNP
rs1049485009 1626 dbSNP
rs1428137697 1629 dbSNP
rs1420421855 1630 dbSNP
rs1196146448 1633 dbSNP
rs1444649962 1635 dbSNP
rs1212201842 1637 dbSNP
rs904308439 1639 dbSNP
rs752632771 1644 dbSNP
rs1203130903 1649 dbSNP
rs577807573 1651 dbSNP
rs772045378 1653 dbSNP
rs773095214 1654 dbSNP
rs1231104850 1665 dbSNP
rs545307016 1671 dbSNP
rs1052645036 1682 dbSNP
rs759710955 1685 dbSNP
rs563989570 1696 dbSNP
rs1293731693 1698 dbSNP
rs139241822 1708 dbSNP
rs1394331080 1709 dbSNP
rs1023866216 1714 dbSNP
rs1297541838 1723 dbSNP
rs904857115 1727 dbSNP
rs549668809 1730 dbSNP
rs561628455 1733 dbSNP
rs1173058389 1735 dbSNP
rs1458720109 1736 dbSNP
rs1035087536 1742 dbSNP
rs1024205614 1746 dbSNP
rs1417579532 1746 dbSNP
rs1189180717 1747 dbSNP
rs775558569 1749 dbSNP
rs528898074 1751 dbSNP
rs763155607 1752 dbSNP
rs1027732286 1759 dbSNP
rs951851906 1760 dbSNP
rs1211410406 1765 dbSNP
rs1333774002 1768 dbSNP
rs1273574704 1778 dbSNP
rs547510239 1786 dbSNP
rs1246629219 1790 dbSNP
rs1333790982 1802 dbSNP
rs1306152360 1809 dbSNP
rs567090412 1819 dbSNP
rs986028946 1824 dbSNP
rs910431833 1825 dbSNP
rs1460071560 1829 dbSNP
rs1015319048 1838 dbSNP
rs942704574 1850 dbSNP
rs976813243 1851 dbSNP
rs922592384 1852 dbSNP
rs1158974838 1855 dbSNP
rs114252263 1857 dbSNP
rs11248419 1858 dbSNP
rs893992766 1859 dbSNP
rs143141112 1861 dbSNP
rs748916567 1864 dbSNP
rs1467643624 1865 dbSNP
rs1171380374 1875 dbSNP
rs953522809 1884 dbSNP
rs1045347885 1885 dbSNP
rs1348238303 1887 dbSNP
rs185268858 1890 dbSNP
rs1239666601 1891 dbSNP
rs925482212 1892 dbSNP
rs1438737057 1894 dbSNP
rs536913145 1895 dbSNP
rs1052891607 1896 dbSNP
rs1388780738 1899 dbSNP
rs1402964629 1908 dbSNP
rs1398059207 1917 dbSNP
rs1288713010 1921 dbSNP
rs912870707 1925 dbSNP
rs1310834389 1926 dbSNP
rs1355301973 1928 dbSNP
rs555251333 1944 dbSNP
rs1004199175 1946 dbSNP
rs1258736745 1952 dbSNP
rs1034715151 1957 dbSNP
rs1453225743 1959 dbSNP
rs949746142 1965 dbSNP
rs569252560 1968 dbSNP
rs1200523753 1973 dbSNP
rs897470893 1974 dbSNP
rs1205437034 1981 dbSNP
rs1316539328 1985 dbSNP
rs147479781 1991 dbSNP
rs1250305147 1997 dbSNP
rs1233511797 2000 dbSNP
rs1483276526 2002 dbSNP
rs1347198740 2005 dbSNP
rs1275563164 2007 dbSNP
rs1235675670 2011 dbSNP
rs1001415352 2019 dbSNP
rs1201878417 2043 dbSNP
rs1049332504 2045 dbSNP
rs187608050 2046 dbSNP
rs1474760137 2047 dbSNP
rs578054733 2050 dbSNP
rs138312001 2054 dbSNP
rs1311561052 2056 dbSNP
rs879423256 2059 dbSNP
rs563698568 2076 dbSNP
rs1375508722 2077 dbSNP
rs756850437 2080 dbSNP
rs1426704265 2084 dbSNP
rs1372088947 2090 dbSNP
rs575806523 2091 dbSNP
rs374285690 2092 dbSNP
rs1029239208 2097 dbSNP
rs966028813 2099 dbSNP
rs1255183396 2105 dbSNP
rs976388275 2106 dbSNP
rs1485990136 2115 dbSNP
rs1279415610 2116 dbSNP
rs778564502 2117 dbSNP
rs1337545501 2120 dbSNP
rs374410699 2123 dbSNP
rs1301326931 2124 dbSNP
rs925419769 2127 dbSNP
rs542906500 2130 dbSNP
rs1300390213 2135 dbSNP
rs1338855687 2138 dbSNP
rs750731577 2141 dbSNP
rs1341525625 2148 dbSNP
rs561613803 2169 dbSNP
rs915292757 2171 dbSNP
rs946774469 2175 dbSNP
rs528885250 2181 dbSNP
rs1045294951 2193 dbSNP
rs747305275 2195 dbSNP
rs574252136 2202 dbSNP
rs1415374582 2206 dbSNP
rs192467134 2211 dbSNP
rs1475414485 2225 dbSNP
rs1277765402 2226 dbSNP
rs755737198 2230 dbSNP
rs937233503 2231 dbSNP
rs779816973 2232 dbSNP
rs1216847463 2233 dbSNP
rs1048987964 2236 dbSNP
rs1320359343 2237 dbSNP
rs1484764440 2239 dbSNP
rs897507871 2240 dbSNP
rs1380382405 2242 dbSNP
rs993083734 2249 dbSNP
rs1048805771 2250 dbSNP
rs1185928999 2251 dbSNP
rs6599658 2257 dbSNP
rs940556213 2264 dbSNP
rs754575937 2268 dbSNP
rs1007260858 2270 dbSNP
rs1434997788 2274 dbSNP
rs1036849498 2289 dbSNP
rs1405691212 2296 dbSNP
rs532858660 2297 dbSNP
rs1017462308 2299 dbSNP
rs966259847 2308 dbSNP
rs997458570 2310 dbSNP
rs1171797378 2322 dbSNP
rs1469615389 2328 dbSNP
rs901960160 2330 dbSNP
rs997607119 2354 dbSNP
rs1028958812 2358 dbSNP
rs1251316762 2364 dbSNP
rs1394733607 2364 dbSNP
rs1031984793 2366 dbSNP
rs144614866 2370 dbSNP
rs889137895 2375 dbSNP
rs1292536104 2381 dbSNP
rs1222554315 2385 dbSNP
rs1350675604 2387 dbSNP
rs1160654713 2389 dbSNP
rs988172979 2392 dbSNP
rs915240235 2396 dbSNP
rs1430454060 2399 dbSNP
rs1368178737 2400 dbSNP
rs968146670 2416 dbSNP
rs957090707 2431 dbSNP
rs1370286770 2432 dbSNP
rs988361465 2436 dbSNP
rs7073325 2443 dbSNP
rs1316041990 2450 dbSNP
rs1300677551 2455 dbSNP
rs1399899025 2463 dbSNP
rs1380771404 2464 dbSNP
rs1160406385 2469 dbSNP
rs1346492112 2472 dbSNP
rs1441574658 2473 dbSNP
rs926824693 2474 dbSNP
rs748122511 2480 dbSNP
rs537299656 2482 dbSNP
rs1314917572 2483 dbSNP
rs1214741753 2484 dbSNP
rs772096724 2493 dbSNP
rs1287308941 2504 dbSNP
rs1242990493 2514 dbSNP
rs548857702 2517 dbSNP
rs1302131592 2528 dbSNP
rs376987467 2529 dbSNP
rs1191632499 2530 dbSNP
rs369746240 2541 dbSNP
rs929553509 2543 dbSNP
rs867972454 2545 dbSNP
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rs1314671646 5756 dbSNP
rs1453798199 5773 dbSNP
rs1381863329 5783 dbSNP
rs1296945962 5793 dbSNP
rs919882451 5796 dbSNP
rs78368091 5800 dbSNP
rs560480480 5801 dbSNP
rs145412626 5819 dbSNP
rs1163880442 5822 dbSNP
rs1425320595 5827 dbSNP
rs149230991 5836 dbSNP
rs1176415605 5841 dbSNP
rs944112910 5842 dbSNP
rs1041814958 5847 dbSNP
rs890954855 5857 dbSNP
rs1489892174 5865 dbSNP
rs1291292789 5869 dbSNP
rs1392351769 5870 dbSNP
rs1386484011 5871 dbSNP
rs943826749 5872 dbSNP
rs1223597932 5874 dbSNP
rs1374633733 5876 dbSNP
rs1310426268 5877 dbSNP
rs1402526317 5882 dbSNP
rs1337909207 5888 dbSNP
rs921256665 5893 dbSNP
rs146898291 5896 dbSNP
rs1361719591 5902 dbSNP
rs1158042320 5913 dbSNP
rs1419487318 5916 dbSNP
rs1414053620 5918 dbSNP
rs10794599 5921 dbSNP
rs549988579 5922 dbSNP
rs1479491352 5923 dbSNP
rs193141735 5939 dbSNP
rs1000782344 5940 dbSNP
rs1489557641 5948 dbSNP
rs1054899322 5966 dbSNP
rs1259212415 5970 dbSNP
rs115365659 5971 dbSNP
rs748393090 5972 dbSNP
rs547691781 5980 dbSNP
rs1290736964 5984 dbSNP
rs1274565476 5986 dbSNP
rs1345439151 5987 dbSNP
rs1013421162 5992 dbSNP
rs1487216521 5996 dbSNP
rs1388033267 5999 dbSNP
rs566416247 6004 dbSNP
rs184473620 6007 dbSNP
rs971550593 6010 dbSNP
rs11248423 6011 dbSNP
rs1013321942 6012 dbSNP
rs895983614 6012 dbSNP
rs77799448 6022 dbSNP
rs1250755362 6024 dbSNP
rs1475524669 6035 dbSNP
rs904857279 6039 dbSNP
rs1199616232 6041 dbSNP
rs777917823 6043 dbSNP
rs961644109 6044 dbSNP
rs537968420 6049 dbSNP
rs1186203848 6051 dbSNP
rs1465625717 6059 dbSNP
rs1270336943 6066 dbSNP
rs556359578 6070 dbSNP
rs1323391237 6080 dbSNP
rs116837332 6081 dbSNP
rs1168730052 6085 dbSNP
rs1324224491 6093 dbSNP
rs1294392512 6095 dbSNP
rs1435452180 6103 dbSNP
rs951239042 6104 dbSNP
rs953696836 6105 dbSNP
rs1469126372 6112 dbSNP
rs1406685906 6122 dbSNP
rs1390061898 6127 dbSNP
rs985629977 6128 dbSNP
rs141716356 6129 dbSNP
rs1169831029 6134 dbSNP
rs778413051 6147 dbSNP
rs1042286186 6148 dbSNP
rs965611422 6151 dbSNP
rs1291903439 6153 dbSNP
rs1461177832 6162 dbSNP
rs570156272 6164 dbSNP
rs542099555 6165 dbSNP
rs1319416979 6178 dbSNP
rs1243367894 6179 dbSNP
rs1053670798 6185 dbSNP
rs147068411 6191 dbSNP
rs572397459 6207 dbSNP
rs1250202935 6208 dbSNP
rs189294686 6215 dbSNP
rs1044777876 6235 dbSNP
rs907320538 6236 dbSNP
rs1312510304 6237 dbSNP
rs947501983 6244 dbSNP
rs34525900 6251 dbSNP
rs1189992986 6259 dbSNP
rs564585000 6261 dbSNP
rs1389534223 6262 dbSNP
rs1395697702 6276 dbSNP
rs1423343517 6284 dbSNP
rs771033170 6286 dbSNP
rs1430519891 6288 dbSNP
rs1392223122 6294 dbSNP
rs1161957814 6298 dbSNP
rs1444386278 6302 dbSNP
rs1381523651 6308 dbSNP
rs1193944409 6314 dbSNP
rs777314574 6314 dbSNP
rs1190059668 6335 dbSNP
rs1436521787 6337 dbSNP
rs961489444 6352 dbSNP
rs1205208371 6353 dbSNP
rs978691723 6358 dbSNP
rs776655659 6360 dbSNP
rs996162023 6360 dbSNP
rs1356615876 6375 dbSNP
rs1285676759 6383 dbSNP
rs1236640384 6392 dbSNP
rs1308600560 6396 dbSNP
rs1335055097 6396 dbSNP
rs79314852 6397 dbSNP
rs1372553940 6403 dbSNP
rs543523346 6404 dbSNP
rs1404919121 6409 dbSNP
rs746352477 6412 dbSNP
rs11248424 6413 dbSNP
rs1468891581 6419 dbSNP
rs1363754489 6420 dbSNP
rs116902943 6422 dbSNP
rs1379026464 6430 dbSNP
rs576385649 6433 dbSNP
rs1383233906 6437 dbSNP
rs1451873553 6440 dbSNP
rs376002895 6452 dbSNP
rs995259299 6455 dbSNP
rs1327669563 6456 dbSNP
rs977803353 6457 dbSNP
rs1288923474 6458 dbSNP
rs923772505 6460 dbSNP
rs936494359 6461 dbSNP
rs1273385400 6469 dbSNP
rs566283868 6471 dbSNP
rs192885299 6485 dbSNP
rs1004119701 6487 dbSNP
rs779183352 6498 dbSNP
rs1325726367 6504 dbSNP
rs947946964 6504 dbSNP
rs1019987335 6514 dbSNP
rs1388283466 6524 dbSNP
rs965234251 6527 dbSNP
rs1459340660 6528 dbSNP
rs373166917 6535 dbSNP
rs1254210246 6548 dbSNP
rs1478047422 6551 dbSNP
rs1248117901 6552 dbSNP
rs1482909466 6553 dbSNP
rs1190504731 6555 dbSNP
rs1044413859 6556 dbSNP
rs975616475 6558 dbSNP
rs1268600075 6561 dbSNP
rs1205626811 6563 dbSNP
rs907203114 6566 dbSNP
rs184055194 6574 dbSNP
rs570443955 6584 dbSNP
rs1368330547 6590 dbSNP
rs1276838129 6605 dbSNP
rs763593893 6609 dbSNP
rs978827274 6610 dbSNP
rs1188180767 6617 dbSNP
rs1037036287 6622 dbSNP
rs1395868054 6628 dbSNP
rs1455876036 6630 dbSNP
rs1404577331 6631 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Article - Hafner M; Landthaler M; Burger L; Khorshid et al.
- Cell, 2010
RNA transcripts are subject to posttranscriptional gene regulation involving hundreds of RNA-binding proteins (RBPs) and microRNA-containing ribonucleoprotein complexes (miRNPs) expressed in a cell-type dependent fashion. We developed a cell-based crosslinking approach to determine at high resolution and transcriptome-wide the binding sites of cellular RBPs and miRNPs. The crosslinked sites are revealed by thymidine to cytidine transitions in the cDNAs prepared from immunopurified RNPs of 4-thiouridine-treated cells. We determined the binding sites and regulatory consequences for several intensely studied RBPs and miRNPs, including PUM2, QKI, IGF2BP1-3, AGO/EIF2C1-4 and TNRC6A-C. Our study revealed that these factors bind thousands of sites containing defined sequence motifs and have distinct preferences for exonic versus intronic or coding versus untranslated transcript regions. The precise mapping of binding sites across the transcriptome will be critical to the interpretation of the rapidly emerging data on genetic variation between individuals and how these variations contribute to complex genetic diseases.
LinkOut: [PMID: 20371350]
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
ESCA 0.6 0.03 0.609 0.02 11 Click to see details
CHOL 0.576 0.05 0.450 0.11 9 Click to see details
LUAD -0.415 0.09 -0.315 0.16 12 Click to see details
CESC -0.949 0.1 -0.500 0.33 3 Click to see details
PCPG -0.935 0.12 -1.000 0.5 3 Click to see details
LIHC 0.142 0.17 0.104 0.24 49 Click to see details
BRCA -0.1 0.18 -0.073 0.25 84 Click to see details
LUSC -0.141 0.2 -0.138 0.2 38 Click to see details
PAAD 0.561 0.22 0.200 0.4 4 Click to see details
COAD -0.293 0.24 0.000 0.5 8 Click to see details
HNSC 0.109 0.25 0.109 0.25 42 Click to see details
KIRC -0.07 0.29 -0.079 0.26 68 Click to see details
UCEC -0.122 0.31 -0.021 0.47 19 Click to see details
KIRP -0.075 0.34 -0.109 0.28 32 Click to see details
STAD 0.073 0.35 0.076 0.34 32 Click to see details
PRAD -0.053 0.36 -0.108 0.23 50 Click to see details
BLCA -0.09 0.36 0.104 0.34 18 Click to see details
KICH -0.058 0.39 -0.009 0.48 25 Click to see details
THCA 0.028 0.42 0.102 0.22 59 Click to see details
THCA 0.028 0.42 0.102 0.22 59 Click to see details
THCA 0.028 0.42 0.102 0.22 59 Click to see details
370 hsa-let-7d-5p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT000401 BDNF brain derived neurotrophic factor 1 1
MIRT000402 CDK6 cyclin dependent kinase 6 1 1
MIRT000403 CDC25A cell division cycle 25A 1 1
MIRT000405 BCL2 BCL2, apoptosis regulator 1 1
MIRT000406 KRAS KRAS proto-oncogene, GTPase 1 1
MIRT002005 HMGA2 high mobility group AT-hook 2 6 8
MIRT003901 APP amyloid beta precursor protein 2 1
MIRT004347 DICER1 dicer 1, ribonuclease III 3 1
MIRT004505 SLC11A2 solute carrier family 11 member 2 6 5
MIRT005549 PDGFA platelet derived growth factor subunit A 3 1
MIRT006398 IL13 interleukin 13 2 1
MIRT006406 MPL MPL proto-oncogene, thrombopoietin receptor 1 1
MIRT032101 RABGAP1L RAB GTPase activating protein 1 like 1 1
MIRT032102 DRD3 dopamine receptor D3 1 1
MIRT032103 SMOX spermine oxidase 1 1
MIRT032104 DAD1 defender against cell death 1 1 1
MIRT032105 EIF4G2 eukaryotic translation initiation factor 4 gamma 2 3 5
MIRT032106 CALCOCO2 calcium binding and coiled-coil domain 2 1 1
MIRT032107 GPR63 G protein-coupled receptor 63 1 1
MIRT032108 FAM135A family with sequence similarity 135 member A 1 1
MIRT032109 CPNE1 copine 1 1 1
MIRT032110 NR4A1 nuclear receptor subfamily 4 group A member 1 1 1
MIRT032111 BUB3 BUB3, mitotic checkpoint protein 1 1
MIRT032112 TBC1D9B TBC1 domain family member 9B 1 1
MIRT032113 LARP4B La ribonucleoprotein domain family member 4B 1 1
MIRT032114 NAA20 N(alpha)-acetyltransferase 20, NatB catalytic subunit 2 3
MIRT032115 FBXO3 F-box protein 3 1 1
MIRT032116 ZNF763 zinc finger protein 763 1 1
MIRT032117 PCNP PEST proteolytic signal containing nuclear protein 1 1
MIRT032118 HOMER1 homer scaffolding protein 1 1 1
MIRT032119 RBM12 RNA binding motif protein 12 1 1
MIRT032120 KMT2A lysine methyltransferase 2A 1 1
MIRT032121 CBR4 carbonyl reductase 4 1 1
MIRT032122 THBS1 thrombospondin 1 2 4
MIRT032123 TLE4 transducin like enhancer of split 4 1 1
MIRT032124 TOMM20 translocase of outer mitochondrial membrane 20 1 1
MIRT032125 TMED4 transmembrane p24 trafficking protein 4 1 1
MIRT032126 AKAP8 A-kinase anchoring protein 8 2 4
MIRT032127 TST thiosulfate sulfurtransferase 1 1
MIRT032128 GPR137B G protein-coupled receptor 137B 1 1
MIRT032129 RALGAPB Ral GTPase activating protein non-catalytic beta subunit 1 1
MIRT032130 IGF2BP3 insulin like growth factor 2 mRNA binding protein 3 2 4
MIRT032131 RPUSD2 RNA pseudouridylate synthase domain containing 2 1 1
MIRT032132 ZBTB24 zinc finger and BTB domain containing 24 1 1
MIRT032133 SPATA2 spermatogenesis associated 2 1 1
MIRT032134 GOLT1B golgi transport 1B 1 1
MIRT032135 ERC1 ELKS/RAB6-interacting/CAST family member 1 1 1
MIRT032136 SREK1IP1 SREK1 interacting protein 1 1 1
MIRT032137 RFX5 regulatory factor X5 1 1
MIRT032138 BIN3 bridging integrator 3 1 1
MIRT032139 CEP120 centrosomal protein 120 2 3
MIRT032140 ZNF526 zinc finger protein 526 1 1
MIRT032141 ISL1 ISL LIM homeobox 1 1 1
MIRT032142 POLR2D RNA polymerase II subunit D 2 5
MIRT032143 SMCR7L mitochondrial elongation factor 1 1 4
MIRT032144 TMEM194A nuclear envelope integral membrane protein 1 1 1
MIRT032145 KATNAL1 katanin catalytic subunit A1 like 1 1 1
MIRT032146 C12orf4 chromosome 12 open reading frame 4 2 3
MIRT032147 TMEM2 transmembrane protein 2 1 1
MIRT032148 DLC1 DLC1 Rho GTPase activating protein 1 1
MIRT032149 TMTC3 transmembrane and tetratricopeptide repeat containing 3 2 3
MIRT032150 SREK1 splicing regulatory glutamic acid and lysine rich protein 1 1 1
MIRT032151 ZNF354B zinc finger protein 354B 1 1
MIRT032152 ZNF200 zinc finger protein 200 2 4
MIRT032153 ADCY9 adenylate cyclase 9 1 1
MIRT032154 TNRC6A trinucleotide repeat containing 6A 1 1
MIRT032155 STK40 serine/threonine kinase 40 1 1
MIRT032156 PCGF3 polycomb group ring finger 3 2 6
MIRT032157 ZBTB39 zinc finger and BTB domain containing 39 1 1
MIRT032158 LIN52 lin-52 DREAM MuvB core complex component 1 1
MIRT032159 RAD9A RAD9 checkpoint clamp component A 1 1
MIRT032160 ARRDC4 arrestin domain containing 4 1 1
MIRT032161 SLC30A6 solute carrier family 30 member 6 1 1
MIRT032162 LBR lamin B receptor 1 1
MIRT032163 C9orf41 carnosine N-methyltransferase 1 1 1
MIRT032164 ESPL1 extra spindle pole bodies like 1, separase 2 5
MIRT032165 ABT1 activator of basal transcription 1 2 9
MIRT032166 NHLRC3 NHL repeat containing 3 2 6
MIRT032167 GLMN glomulin, FKBP associated protein 1 1
MIRT032168 IGDCC4 immunoglobulin superfamily DCC subclass member 4 2 6
MIRT032169 ZNF644 zinc finger protein 644 2 3
MIRT032170 C11orf57 chromosome 11 open reading frame 57 2 5
MIRT032171 FAM104A family with sequence similarity 104 member A 2 2
MIRT032172 SPRYD4 SPRY domain containing 4 1 1
MIRT032173 ARID3A AT-rich interaction domain 3A 2 3
MIRT032174 SLC10A7 solute carrier family 10 member 7 2 6
MIRT032175 ONECUT2 one cut homeobox 2 2 3
MIRT032176 USP24 ubiquitin specific peptidase 24 1 1
MIRT032177 SMARCAD1 SWI/SNF-related, matrix-associated actin-dependent regulator of chromatin, subfamily a, containing DEAD/H box 1 2 4
MIRT032178 TGFBR1 transforming growth factor beta receptor 1 1 1
MIRT032179 HAND1 heart and neural crest derivatives expressed 1 2 3
MIRT032180 KPNA5 karyopherin subunit alpha 5 2 8
MIRT032181 IGF1R insulin like growth factor 1 receptor 2 9
MIRT032182 TMEM135 transmembrane protein 135 1 1
MIRT032183 SLC20A1 solute carrier family 20 member 1 2 4
MIRT032184 ZNF280B zinc finger protein 280B 1 1
MIRT032185 LIN28B lin-28 homolog B 1 1
MIRT032186 IGF2BP1 insulin like growth factor 2 mRNA binding protein 1 2 3
MIRT051710 CACNG8 calcium voltage-gated channel auxiliary subunit gamma 8 1 1
MIRT051711 PRR13 proline rich 13 1 1
MIRT051712 ZNF746 zinc finger protein 746 1 1
MIRT051713 SLC35A4 solute carrier family 35 member A4 1 1
MIRT051714 RPL31 ribosomal protein L31 1 1
MIRT051715 TPD52L2 tumor protein D52 like 2 1 1
MIRT051716 MRPL51 mitochondrial ribosomal protein L51 1 1
MIRT051717 CTDP1 CTD phosphatase subunit 1 1 1
MIRT051718 RPS6 ribosomal protein S6 1 1
MIRT051719 SENP5 SUMO1/sentrin specific peptidase 5 1 1
MIRT051720 PAXBP1 PAX3 and PAX7 binding protein 1 1 1
MIRT051721 DHX57 DExH-box helicase 57 1 1
MIRT051722 H2AFX H2A histone family member X 1 1
MIRT051723 DSC3 desmocollin 3 1 1
MIRT051724 CIZ1 CDKN1A interacting zinc finger protein 1 1 1
MIRT051725 NCOA1 nuclear receptor coactivator 1 1 1
MIRT051726 LRRC42 leucine rich repeat containing 42 1 1
MIRT051727 UTP6 UTP6, small subunit processome component 1 1
MIRT063194 ADIPOR2 adiponectin receptor 2 2 2
MIRT068153 TXLNA taxilin alpha 2 2
MIRT068788 FNDC3A fibronectin type III domain containing 3A 2 2
MIRT073005 ARID3B AT-rich interaction domain 3B 2 6
MIRT076222 SMCR8 Smith-Magenis syndrome chromosome region, candidate 8 2 6
MIRT083299 ZCCHC3 zinc finger CCHC-type containing 3 2 2
MIRT084975 BACH1 BTB domain and CNC homolog 1 4 3
MIRT095765 GRPEL2 GrpE like 2, mitochondrial 2 10
MIRT112241 MDM4 MDM4, p53 regulator 2 4
MIRT118585 STK4 serine/threonine kinase 4 2 2
MIRT120920 PDE12 phosphodiesterase 12 2 8
MIRT123316 CALU calumenin 2 2
MIRT123975 POLR3D RNA polymerase III subunit D 2 2
MIRT152271 TNFSF9 TNF superfamily member 9 2 2
MIRT153846 NCOA3 nuclear receptor coactivator 3 2 2
MIRT168582 HMGA1 high mobility group AT-hook 1 2 4
MIRT180602 CRY2 cryptochrome circadian clock 2 2 2
MIRT187716 SUOX sulfite oxidase 2 2
MIRT191403 NAA30 N(alpha)-acetyltransferase 30, NatC catalytic subunit 2 2
MIRT193100 MAPK6 mitogen-activated protein kinase 6 2 2
MIRT215719 C5ORF51 chromosome 5 open reading frame 51 2 10
MIRT218814 CDKN1A cyclin dependent kinase inhibitor 1A 2 2
MIRT240329 UBXN2B UBX domain protein 2B 2 2
MIRT243472 TRIM71 tripartite motif containing 71 2 2
MIRT244068 EDN1 endothelin 1 2 2
MIRT252329 SALL3 spalt like transcription factor 3 2 2
MIRT255313 CDV3 CDV3 homolog 2 2
MIRT259276 PGRMC1 progesterone receptor membrane component 1 2 2
MIRT259478 TXLNG taxilin gamma 2 2
MIRT260706 CLDN12 claudin 12 2 6
MIRT266211 PEX11B peroxisomal biogenesis factor 11 beta 2 2
MIRT266625 CHTOP chromatin target of PRMT1 2 2
MIRT268838 C1ORF21 chromosome 1 open reading frame 21 2 2
MIRT284527 PDP2 pyruvate dehyrogenase phosphatase catalytic subunit 2 2 2
MIRT294445 ZNF264 zinc finger protein 264 2 2
MIRT297012 RRM2 ribonucleotide reductase regulatory subunit M2 2 2
MIRT300036 BZW1 basic leucine zipper and W2 domains 1 2 4
MIRT300892 KREMEN1 kringle containing transmembrane protein 1 2 2
MIRT303319 MXD1 MAX dimerization protein 1 2 2
MIRT309845 NAT8L N-acetyltransferase 8 like 2 2
MIRT322427 PPP2R2A protein phosphatase 2 regulatory subunit Balpha 2 2
MIRT324730 ACER2 alkaline ceramidase 2 2 2
MIRT402056 ATP6V1F ATPase H+ transporting V1 subunit F 2 4
MIRT437855 EIF2C1 argonaute 1, RISC catalytic component 3 1
MIRT438633 TNFRSF10B TNF receptor superfamily member 10b 2 1
MIRT439136 ZEB2 zinc finger E-box binding homeobox 2 0 1
MIRT439137 MYC MYC proto-oncogene, bHLH transcription factor 0 1
MIRT442021 NDUFA4P1 NDUFA4, mitochondrial complex associated pseudogene 1 2 2
MIRT445659 ATP6V1G1 ATPase H+ transporting V1 subunit G1 2 6
MIRT447137 KIF27 kinesin family member 27 2 2
MIRT448263 ZNF774 zinc finger protein 774 2 2
MIRT449006 ANKRD46 ankyrin repeat domain 46 2 2
MIRT449954 FMNL3 formin like 3 2 2
MIRT451156 C19orf53 chromosome 19 open reading frame 53 2 2
MIRT451625 MEIS3P1 Meis homeobox 3 pseudogene 1 2 2
MIRT451694 C1RL complement C1r subcomponent like 2 2
MIRT452093 NUCB2 nucleobindin 2 2 2
MIRT452432 QDPR quinoid dihydropteridine reductase 2 2
MIRT452944 DISC1 disrupted in schizophrenia 1 2 2
MIRT453402 RHD Rh blood group D antigen 2 6
MIRT454165 HIST1H2BK histone cluster 1 H2B family member k 2 2
MIRT454281 FXN frataxin 2 2
MIRT454540 RABL2A RAB, member of RAS oncogene family like 2A 2 2
MIRT454855 ACOT9 acyl-CoA thioesterase 9 2 4
MIRT455677 GLO1 glyoxalase I 2 2
MIRT457249 RABL2B RAB, member of RAS oncogene family like 2B 2 2
MIRT457678 ZNF587 zinc finger protein 587 2 2
MIRT457888 THEM6 thioesterase superfamily member 6 2 4
MIRT458017 MRPL12 mitochondrial ribosomal protein L12 2 2
MIRT458280 FUT10 fucosyltransferase 10 2 2
MIRT459737 RRM1 ribonucleotide reductase catalytic subunit M1 2 2
MIRT460454 NOM1 nucleolar protein with MIF4G domain 1 2 4
MIRT460501 FAM105A family with sequence similarity 105 member A 2 6
MIRT460939 NOA1 nitric oxide associated 1 2 4
MIRT461093 OPA3 OPA3, outer mitochondrial membrane lipid metabolism regulator 2 2
MIRT461365 COL8A1 collagen type VIII alpha 1 chain 2 2
MIRT462383 YAE1D1 Yae1 domain containing 1 2 2
MIRT462781 ZNF8 zinc finger protein 8 2 2
MIRT463418 ZC3HAV1L zinc finger CCCH-type containing, antiviral 1 like 2 2
MIRT463663 YWHAZ tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein zeta 2 2
MIRT464266 VCL vinculin 2 2
MIRT465125 TSC22D2 TSC22 domain family member 2 2 4
MIRT466186 TMED5 transmembrane p24 trafficking protein 5 2 4
MIRT466720 SYNJ2BP synaptojanin 2 binding protein 2 2
MIRT469103 RNF144B ring finger protein 144B 2 2
MIRT469713 RAB40C RAB40C, member RAS oncogene family 2 2
MIRT470424 PPP1R15B protein phosphatase 1 regulatory subunit 15B 2 2
MIRT470860 PLXND1 plexin D1 2 2
MIRT471270 PGM2L1 phosphoglucomutase 2 like 1 2 2
MIRT471965 NR6A1 nuclear receptor subfamily 6 group A member 1 2 2
MIRT472738 MTUS1 microtubule associated scaffold protein 1 2 6
MIRT473135 MLLT10 MLLT10, histone lysine methyltransferase DOT1L cofactor 2 2
MIRT473829 MAP2K7 mitogen-activated protein kinase kinase 7 2 2
MIRT473941 LYN LYN proto-oncogene, Src family tyrosine kinase 2 2
MIRT474024 LRRC20 leucine rich repeat containing 20 2 2
MIRT474501 KLHDC8B kelch domain containing 8B 2 2
MIRT474760 KIAA0930 KIAA0930 2 2
MIRT474908 KCTD21 potassium channel tetramerization domain containing 21 2 2
MIRT475332 IFNLR1 interferon lambda receptor 1 2 2
MIRT475380 ICOSLG inducible T-cell costimulator ligand 2 2
MIRT475734 HERPUD1 homocysteine inducible ER protein with ubiquitin like domain 1 2 4
MIRT476549 GABPB1 GA binding protein transcription factor beta subunit 1 2 4
MIRT476974 FAM83G family with sequence similarity 83 member G 2 4
MIRT477679 EFHD2 EF-hand domain family member D2 2 2
MIRT479750 CCND1 cyclin D1 2 2
MIRT481194 ATXN7L3B ataxin 7 like 3B 2 4
MIRT481239 ATXN7L3 ataxin 7 like 3 2 2
MIRT481364 ATG9A autophagy related 9A 2 2
MIRT481389 ATG12 autophagy related 12 2 2
MIRT481653 AREL1 apoptosis resistant E3 ubiquitin protein ligase 1 2 2
MIRT481853 AP1S1 adaptor related protein complex 1 sigma 1 subunit 2 2
MIRT482185 AHR aryl hydrocarbon receptor 2 2
MIRT482221 AHCYL2 adenosylhomocysteinase like 2 2 2
MIRT485297 PLAGL2 PLAG1 like zinc finger 2 2 2
MIRT486660 ZNF28 zinc finger protein 28 2 2
MIRT489414 TUBB2A tubulin beta 2A class IIa 2 2
MIRT491865 ZBTB5 zinc finger and BTB domain containing 5 2 8
MIRT492211 SOCS1 suppressor of cytokine signaling 1 2 2
MIRT492625 PMAIP1 phorbol-12-myristate-13-acetate-induced protein 1 2 2
MIRT493322 LIMD2 LIM domain containing 2 2 2
MIRT493902 FAM43A family with sequence similarity 43 member A 2 4
MIRT495969 TBC1D19 TBC1 domain family member 19 2 2
MIRT496113 SNX17 sorting nexin 17 2 2
MIRT497876 SLC12A7 solute carrier family 12 member 7 2 2
MIRT498118 PLEKHO1 pleckstrin homology domain containing O1 2 4
MIRT499406 PLCG2 phospholipase C gamma 2 2 4
MIRT499494 GGA3 golgi associated, gamma adaptin ear containing, ARF binding protein 3 2 2
MIRT499654 SDR42E1 short chain dehydrogenase/reductase family 42E, member 1 2 2
MIRT499943 MFSD8 major facilitator superfamily domain containing 8 2 2
MIRT499998 HIST1H2BD histone cluster 1 H2B family member d 2 4
MIRT500899 STRN striatin 2 4
MIRT501113 SLC5A6 solute carrier family 5 member 6 2 4
MIRT501209 SUMO1 small ubiquitin-like modifier 1 2 2
MIRT501247 SEMA4C semaphorin 4C 2 6
MIRT501327 RNFT1 ring finger protein, transmembrane 1 2 2
MIRT501349 RNF44 ring finger protein 44 2 4
MIRT501388 RBFOX2 RNA binding protein, fox-1 homolog 2 2 10
MIRT501442 RAB11FIP4 RAB11 family interacting protein 4 2 2
MIRT501752 NSD1 nuclear receptor binding SET domain protein 1 2 2
MIRT501941 MBD2 methyl-CpG binding domain protein 2 2 8
MIRT502121 KMT2D lysine methyltransferase 2D 2 4
MIRT502783 CEP135 centrosomal protein 135 2 2
MIRT502840 CELF1 CUGBP Elav-like family member 1 2 2
MIRT505579 SMC1A structural maintenance of chromosomes 1A 2 6
MIRT506360 NUP155 nucleoporin 155 2 6
MIRT507243 FIGN fidgetin, microtubule severing factor 2 8
MIRT507689 COIL coilin 2 6
MIRT508402 C1orf210 chromosome 1 open reading frame 210 2 6
MIRT508666 DIABLO diablo IAP-binding mitochondrial protein 2 4
MIRT508933 AK4 adenylate kinase 4 2 4
MIRT510392 ZNF566 zinc finger protein 566 2 6
MIRT510514 YOD1 YOD1 deubiquitinase 2 6
MIRT511387 IKZF3 IKAROS family zinc finger 3 2 4
MIRT512747 CD59 CD59 molecule (CD59 blood group) 2 4
MIRT515955 C9orf156 tRNA methyltransferase O 2 2
MIRT516084 ZBTB8OS zinc finger and BTB domain containing 8 opposite strand 2 4
MIRT521390 RDX radixin 2 4
MIRT522349 NCKIPSD NCK interacting protein with SH3 domain 2 4
MIRT523627 FZD9 frizzled class receptor 9 2 4
MIRT523734 FBXW2 F-box and WD repeat domain containing 2 2 4
MIRT523983 DVL3 dishevelled segment polarity protein 3 2 2
MIRT524115 DNA2 DNA replication helicase/nuclease 2 2 2
MIRT525728 SOD2 superoxide dismutase 2 2 2
MIRT527764 RRAD RRAD, Ras related glycolysis inhibitor and calcium channel regulator 2 2
MIRT529728 OPRL1 opioid related nociceptin receptor 1 2 2
MIRT533189 WASL Wiskott-Aldrich syndrome like 2 6
MIRT536379 LEFTY1 left-right determination factor 1 2 2
MIRT543786 RBM12B RNA binding motif protein 12B 2 4
MIRT543869 SLC16A9 solute carrier family 16 member 9 2 2
MIRT545388 PM20D2 peptidase M20 domain containing 2 2 2
MIRT546329 TGFBR3 transforming growth factor beta receptor 3 2 2
MIRT547372 MSI2 musashi RNA binding protein 2 2 2
MIRT547573 LRIG3 leucine rich repeats and immunoglobulin like domains 3 2 4
MIRT548266 FBXL20 F-box and leucine rich repeat protein 20 2 2
MIRT548346 EPHA4 EPH receptor A4 2 2
MIRT548535 DUSP1 dual specificity phosphatase 1 2 2
MIRT548564 DNAL1 dynein axonemal light chain 1 2 2
MIRT548780 COLEC12 collectin subfamily member 12 2 2
MIRT548972 CCNT2 cyclin T2 2 2
MIRT549022 CBX5 chromobox 5 2 2
MIRT549207 BEND4 BEN domain containing 4 2 4
MIRT549764 ZNF611 zinc finger protein 611 2 6
MIRT549800 KIAA0391 KIAA0391 2 2
MIRT549848 ECHDC1 ethylmalonyl-CoA decarboxylase 1 2 2
MIRT550727 PMPCA peptidase, mitochondrial processing alpha subunit 2 4
MIRT550899 ACTA1 actin, alpha 1, skeletal muscle 2 2
MIRT551284 MCF2L2 MCF.2 cell line derived transforming sequence-like 2 2 6
MIRT551319 GSG2 histone H3 associated protein kinase 2 6
MIRT552004 RAD18 RAD18, E3 ubiquitin protein ligase 2 2
MIRT552411 ZNF460 zinc finger protein 460 2 4
MIRT553018 USP38 ubiquitin specific peptidase 38 2 2
MIRT555551 PLEKHA3 pleckstrin homology domain containing A3 2 2
MIRT555717 PDZD8 PDZ domain containing 8 2 2
MIRT557967 FAM222B family with sequence similarity 222 member B 2 2
MIRT559088 C19orf47 chromosome 19 open reading frame 47 2 4
MIRT559498 ARIH1 ariadne RBR E3 ubiquitin protein ligase 1 2 2
MIRT561776 PEG10 paternally expressed 10 2 2
MIRT564403 EMILIN2 elastin microfibril interfacer 2 2 4
MIRT565450 SURF4 surfeit 4 2 2
MIRT566519 PARP16 poly(ADP-ribose) polymerase family member 16 2 2
MIRT567430 GNG5 G protein subunit gamma 5 2 2
MIRT567718 E2F6 E2F transcription factor 6 2 2
MIRT568649 ABHD17C abhydrolase domain containing 17C 2 2
MIRT569499 THYN1 thymocyte nuclear protein 1 2 2
MIRT573821 TGOLN2 trans-golgi network protein 2 2 2
MIRT574364 ZBTB37 zinc finger and BTB domain containing 37 2 2
MIRT574749 GOLGA4 golgin A4 2 2
MIRT576088 Poteg POTE ankyrin domain family, member G 2 2
MIRT576807 Thbs1 thrombospondin 1 2 3
MIRT616371 RWDD1 RWD domain containing 1 2 2
MIRT617852 FMO4 flavin containing monooxygenase 4 2 2
MIRT642395 ZNF556 zinc finger protein 556 2 2
MIRT680520 PRIM2 DNA primase subunit 2 2 2
MIRT680548 ZNF584 zinc finger protein 584 2 2
MIRT680801 ZNF578 zinc finger protein 578 2 2
MIRT680839 ARL8B ADP ribosylation factor like GTPase 8B 2 2
MIRT681142 INTS7 integrator complex subunit 7 2 2
MIRT681272 RFC2 replication factor C subunit 2 2 2
MIRT681324 ZFAND4 zinc finger AN1-type containing 4 2 4
MIRT681360 BRI3BP BRI3 binding protein 2 2
MIRT681507 STAT2 signal transducer and activator of transcription 2 2 2
MIRT681537 ZNF738 zinc finger protein 738 2 2
MIRT681659 DTX3L deltex E3 ubiquitin ligase 3L 2 2
MIRT681739 RAB19 RAB19, member RAS oncogene family 2 4
MIRT681761 CDKAL1 CDK5 regulatory subunit associated protein 1 like 1 2 2
MIRT681798 EIF4A3 eukaryotic translation initiation factor 4A3 2 2
MIRT681870 DNAH9 dynein axonemal heavy chain 9 2 2
MIRT681942 SLC19A3 solute carrier family 19 member 3 2 2
MIRT682103 ITGA3 integrin subunit alpha 3 2 4
MIRT682182 SLC38A7 solute carrier family 38 member 7 2 2
MIRT682239 SAR1A secretion associated Ras related GTPase 1A 2 2
MIRT682385 PHACTR4 phosphatase and actin regulator 4 2 2
MIRT682445 MTX3 metaxin 3 2 2
MIRT682605 CPA4 carboxypeptidase A4 2 2
MIRT682641 COX6B1 cytochrome c oxidase subunit 6B1 2 2
MIRT689328 FPR1 formyl peptide receptor 1 2 2
MIRT689731 ATXN2 ataxin 2 2 2
MIRT691037 ZNF799 zinc finger protein 799 2 2
MIRT691936 DNAJC28 DnaJ heat shock protein family (Hsp40) member C28 2 2
MIRT694885 ZNF417 zinc finger protein 417 2 2
MIRT695256 ZNF443 zinc finger protein 443 2 2
MIRT695414 ADH5 alcohol dehydrogenase 5 (class III), chi polypeptide 2 2
MIRT700588 PRSS22 protease, serine 22 2 2
MIRT701425 NHLRC2 NHL repeat containing 2 2 2
MIRT702485 KIAA1328 KIAA1328 2 2
MIRT702714 IPO9 importin 9 2 2
MIRT704030 EDEM3 ER degradation enhancing alpha-mannosidase like protein 3 2 2
MIRT704422 CTPS1 CTP synthase 1 2 2
MIRT705751 AMD1 adenosylmethionine decarboxylase 1 2 2
MIRT712372 NAP1L1 nucleosome assembly protein 1 like 1 2 2
MIRT713521 PAFAH2 platelet activating factor acetylhydrolase 2 2 2
MIRT734116 Olr1 oxidized low density lipoprotein (lectin-like) receptor 1 3 0
MIRT734252 OPRM1 opioid receptor mu 1 3 0
MIRT735524 CD274 CD274 molecule 3 0
miRNA-Drug Associations
miRNA Small Melocule FDA CID Detection Method Condition PMID Year Expression Pattern of miRNA
let-7d Benzene NULL 241 MiRNA PCR array white blood cell 24780745 2014 up-regulated
let-7d Benzene NULL 241 MiRNA PCR array blood mononuclear cells 24780745 2014 up-regulated
let-7d Hydroxamic acid HDACi LAQ824 NULL NULL Microarray breast cancer cell line SKBr3 16452179 2006 down-regulated
let-7d Gemcitabine approved 60750 Northern blot Mz-ChA-1 human cholangiocarcinoma cell lines 16762633 2006 up-regulated
let-7d All-trans-retinoic acid (ATRA) approved 444795 Microarray acute promyelocytic leukemia 17260024 2008 up-regulated