miRTarBase - #MIRT035959


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pre-miRNA Information
pre-miRNA hsa-mir-1301   
Genomic Coordinates chr2: 25328640 - 25328721
Synonyms MIRN1301, hsa-mir-1301, MIR1301
Description Homo sapiens miR-1301 stem-loop
Comment None
RNA Secondary Structure
Associated Diseases

Mature miRNA Information
Mature miRNA hsa-miR-1301-3p
Sequence 48| UUGCAGCUGCCUGGGAGUGACUUC |71
Evidence Experimental
Experiments Illumina
Editing Events in miRNAs
Modification Type Position on miR Chromosome DNA Strand Genomic Position (hg38) List of PMIDs Variant details
A-to-I 5 2 - 25328670 26449202, 27298257, 28411194, 28550310, 28855684, 29267965, 29950133, 29165639, 29233923 MiREDiBase
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs775188648 6 dbSNP
rs1022364375 11 dbSNP
rs938368115 12 dbSNP
rs771728471 15 dbSNP
rs778709428 19 dbSNP
rs1358947891 20 dbSNP
Putative Targets

miRNA Expression profile
Human miRNA Tissue Atlas
miRNAs in Extracellular Vesicles
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol HDLBP   
Synonyms HBP, PRO2900, VGL
Description high density lipoprotein binding protein
Transcript NM_005336   
Other Transcripts NM_203346   
Expression
Putative miRNA Targets on HDLBP
3'UTR of HDLBP
(miRNA target sites are highlighted)		 
>HDLBP|NM_005336|3'UTR
   1 TGATCAAAAAGAACAGAACCCTCTCCAGCCTGCTGACCCAAACCCAACCACACAATGGTTTGTCTCAATCTGACCCAGCG
  81 GCTGGACCCTCCGTAAATTGTTGACGCTCTTCCCCCTTCCCGAGGTCCCGCAGGGAGCCTAGCGCCTGGCTGTGTGTGCG
 161 GCCGCTCCTCCAGGCCTGGCCGTGCCCGCTCAGGACCTGCTCCACTGTTTAACACTAAACCAAGGTCATGAGCATTCGTG
 241 CTAAGATAACAGACTCCAGCTCCTGGTCCACCCGGCATGTCAGTCAGCACTCTGGCCTTCATCACGAGAGCTCCGCAGCC
 321 GTGGCTAGGATTCCACTTCCTGTGTCATGACCTCAGGAAATAAACGTCCTTGACTTTATAAAAGCCAAACGTTTGCCCTC
 401 TTCCTTTCCCACCTCCCTCCTGCCAGTTTCCCTTGGTCCAGACAGTCCTGTTTGTGGAGTGCAATCAGCCTCCTCCAGCT
 481 GCCAGAGCGCCTCAGCACAGGTGTCAGGGTGCAAGGAAGACCTGGCAATGGACAGCAGGAGGCAGGTTCCTGGAGCTGGG
 561 GGGTGACCTGAGAGGCAGAGGGTGACGGGTTCTCAGGCAGTCCTGATTTTACCTGCCGTGGGGTCTGAAAGCACCAAGGG
 641 TCCCTGCCCCTACCTCCACTGCCAGACCCTCAGCCTGAGGTCTGGTGAGTGGAGCCTGGAGGCAAGGTGGTAGGCACCAT
 721 CTGGGTCCCCTGTGGCCGTCACAGTGTCTGCTGTGATTGAGATGCGCACAGGTTGGGGGAGGTAGGGCCTTACGCTTGTC
 801 CTCAGTGGGGGCAGTTTGCCTTAGATGACAGCTGGGCTCTTCTTCACACCACCTGCAGCCCCTCCCTGCCCCTGCCCTAG
 881 CTGCTGTGTGTTCAGTTGCCTTCTTTCTACCTCAGCCGGCGTGGAGTGGTCTCTGTGCAGTTAGTGCCACCCCACACACC
 961 CGTCTCTTGATTGAGATGTTTCTGGTGGTTATGGGTTTCCCGTGGAGCTGGGGGTGGGCGCCGTGTACCTAAGCTGGAGG
1041 CTGGCGCTCTCCCTCAGCACAGGTGGGTCAGTGGCCAGCAGGCCCATCTGGAGTGGGAGTGGGCACTTCCACCCCGCCCA
1121 CAGGCCATCCGGCTGTGCAGGCCAGCCCCTAGGAGCAGGTCCCGGGTGACTGGCAGTTTTCACGGTCTAGGGCCGAGACG
1201 ATGGCATGGGGCCTAGAGCATGAGGTAGAGCAGAATGCAGACCACGCCGCTGGATGCCGAGAGACCCTGCTCTCCGAGGG
1281 AGGCATCTGTGTCATGCTGTGAGGGCTGAGGACGGGGCCCTAGTCTCTGGTTTTCTGGTCTTAACATCCTTATCTGTGTC
1361 CGCCACGGAGGTGACTGAGCTGCTAGCGAGTTGTCCTGTCCCAGGTACTTGAGTTTTGGAAAAGCTGACTCACGCCCATC
1441 CATCTCACAGCCCTTCCCTGGGGACAGTCGCTTCCGCCTTGACACCTCACTCTCAGTTGAATAACTCAAGCTTGGTCATC
1521 TTCAGACTCGAATTCTTGAGTAGACCCAGACGGCTTAGCCCAAGTCTAGTTGCAGCTGCCTCGGCAAGTCCCCATTTGCT
1601 CAGGCAGCCCTGAATGGGCCTGTTTACAGGAATGGTAAATTGGGATTGGAAGGAATATAGCTTCCAGCTTCATAGGCTAG
1681 GGTGACCACGGCTTAGGAAACAGGGAAAGAAAGCAAGGCCCTTTTCCTGCCTTTCCCGGGATCTGTCTACTCCACCTCCA
1761 CGGGGGAGGCCAGTGGGGAAGGGCTGTCACCTCTTCCCCATCTGCATGAGTTCTGGAACTCTGTCCTGTTGGCTGCTTGC
1841 TTCCAGCTCCCCCCAATCTCCATCGCAGCGGGTTCCTCCTGTCTTTTCTACAGTGTCATAAAACATCCTGCCCCTACCCT
1921 CTCCCAAAGGTCAATTTTAATTCTCACCAAGTTTTGCACATCTCTGTATGTCGCTTGATGTCTTAGACGCGAGCCCTTTC
2001 CTAAACTGTTCAGCGCTCTCTTTTCCTTTGGGTGGTTGTTGCAAGGGTGATGACATGACTGTCCCCAGGCCTGTCTCCCT
2081 GAAGCGTCTGTGCTGTCAGGACAGCCCTGGGCAGAGATGAGGCAGGGGTGAGGCGTGCGTGTGCTTTTCCTCCTTGTTGG
2161 ATGTCTTCCATATCATCTGTTTCCATAGCTACAATCCATCCCTTGGCCTTAACTTTGGAATTTGGAGATTATATGCAAAC
2241 ATGTGTAAAGGCTCATGAATATGGATGACACTGGAATTTTATAAATTCTAAAATAAAACCCGAAACCAGATGTAGCATGC
2321 TGGGACTCATTTTGTCAAAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1 
miRNA  3' cuucaGUGAGGGUC--CGUCGACGuu 5'
               ||  :|:||  ||||||||  
Target 5' tagccCAAGTCTAGTTGCAGCTGCct 3'
 1556 - 1581 141.00 -17.90
2 
miRNA  3' cuUCAGU--GAGGGUCCGUCGACGuu 5'
            | |||  ||||:   |||||||  
Target 5' gcAATCAGCCTCCT--CCAGCTGCca 3'
 461 - 484 140.00 -15.80
3 
miRNA  3' cuUCAGUGAGGGUC-----CG---UCGACGuu 5'
            || | ||||| |     ||   ||||||  
Target 5' gcAGCCCCTCCCTGCCCCTGCCCTAGCTGCtg 3'
 855 - 886 138.00 -15.80
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN31502711 7 COSMIC
COSN30506329 18 COSMIC
COSN16131409 23 COSMIC
COSN30473704 25 COSMIC
COSN18727316 40 COSMIC
COSN16131473 64 COSMIC
COSN30518335 66 COSMIC
COSN30709638 76 COSMIC
COSN166453 92 COSMIC
COSN31514547 93 COSMIC
COSN20074397 105 COSMIC
COSN30120058 106 COSMIC
COSN30542953 125 COSMIC
COSN26442480 159 COSMIC
COSN30093788 174 COSMIC
COSN30093707 179 COSMIC
COSN30168726 181 COSMIC
COSN26736718 230 COSMIC
COSN30162901 285 COSMIC
COSN31541594 390 COSMIC
COSN28741680 441 COSMIC
COSN31563824 479 COSMIC
COSN28687290 498 COSMIC
COSN31552327 586 COSMIC
COSN21626151 612 COSMIC
COSN22092605 1014 COSMIC
COSN31490526 1022 COSMIC
COSN20740555 1023 COSMIC
COSN31588519 1045 COSMIC
COSN31552498 1078 COSMIC
COSM9423884 1242 COSMIC
COSM4133719 1263 COSMIC
COSM9427542 1360 COSMIC
COSM5781622 1440 COSMIC
COSN15117679 1470 COSMIC
COSN22411812 1804 COSMIC
COSN31487586 1810 COSMIC
COSN32062434 1813 COSMIC
COSN32057261 1848 COSMIC
COSN22213566 1980 COSMIC
COSN30174323 1988 COSMIC
COSN31541056 2009 COSMIC
COSN31526786 2114 COSMIC
COSN31596898 2138 COSMIC
COSN30165203 2156 COSMIC
COSN32064410 2183 COSMIC
rs15129 40 GWAS
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs1327397098 5 dbSNP
rs775321848 11 dbSNP
rs769609365 13 dbSNP
rs759203821 14 dbSNP
rs776522556 15 dbSNP
rs1390314942 19 dbSNP
rs770709432 20 dbSNP
rs746964103 21 dbSNP
rs149764127 26 dbSNP
rs1189510584 30 dbSNP
rs2230360 36 dbSNP
rs1321434441 39 dbSNP
rs15129 40 dbSNP
rs1198454140 41 dbSNP
rs1409357069 46 dbSNP
rs372425746 47 dbSNP
rs749580078 48 dbSNP
rs78125729 49 dbSNP
rs1328546192 51 dbSNP
rs922964904 52 dbSNP
rs1478125723 53 dbSNP
rs565782985 54 dbSNP
rs749765552 64 dbSNP
rs956478120 68 dbSNP
rs916408331 71 dbSNP
rs990569933 75 dbSNP
rs116424429 79 dbSNP
rs978949931 80 dbSNP
rs1283969326 87 dbSNP
rs749400516 89 dbSNP
rs2305069 92 dbSNP
rs1023611892 93 dbSNP
rs967007685 98 dbSNP
rs1019841890 105 dbSNP
rs1008475240 106 dbSNP
rs1379080738 109 dbSNP
rs889996556 110 dbSNP
rs187635424 113 dbSNP
rs1292446576 114 dbSNP
rs1446929478 115 dbSNP
rs1213959694 119 dbSNP
rs1398865051 120 dbSNP
rs1167902482 121 dbSNP
rs1013187288 129 dbSNP
rs1028476560 130 dbSNP
rs11552802 133 dbSNP
rs1472413226 135 dbSNP
rs1182254507 139 dbSNP
rs1386815339 143 dbSNP
rs960276660 144 dbSNP
rs898544514 146 dbSNP
rs867709502 150 dbSNP
rs1037053111 157 dbSNP
rs1332243009 159 dbSNP
rs368742242 159 dbSNP
rs1035727022 160 dbSNP
rs1449337262 161 dbSNP
rs567881180 163 dbSNP
rs897935169 164 dbSNP
rs1037482242 167 dbSNP
rs1005980258 168 dbSNP
rs879839113 179 dbSNP
rs888967568 181 dbSNP
rs778085361 182 dbSNP
rs1289679155 184 dbSNP
rs1244202703 186 dbSNP
rs117069991 187 dbSNP
rs750465650 188 dbSNP
rs1310662513 189 dbSNP
rs1441800469 192 dbSNP
rs530682380 201 dbSNP
rs1244757979 202 dbSNP
rs916439537 203 dbSNP
rs1177766240 207 dbSNP
rs1381199050 208 dbSNP
rs1170919945 210 dbSNP
rs990601052 211 dbSNP
rs933259771 224 dbSNP
rs936448636 225 dbSNP
rs748274762 227 dbSNP
rs1295938224 228 dbSNP
rs139790495 232 dbSNP
rs147268261 238 dbSNP
rs1332433822 240 dbSNP
rs1377211726 243 dbSNP
rs925052665 246 dbSNP
rs966810847 250 dbSNP
rs1343593677 254 dbSNP
rs1219288103 256 dbSNP
rs1264998110 258 dbSNP
rs761631938 258 dbSNP
rs1456357771 260 dbSNP
rs1197837194 263 dbSNP
rs1238513939 269 dbSNP
rs1322693693 270 dbSNP
rs912227431 272 dbSNP
rs529747064 273 dbSNP
rs879768862 274 dbSNP
rs1159194251 278 dbSNP
rs954263205 288 dbSNP
rs1178675230 289 dbSNP
rs559417833 290 dbSNP
rs1028507888 293 dbSNP
rs947515663 294 dbSNP
rs1392783253 301 dbSNP
rs541010493 305 dbSNP
rs992119367 314 dbSNP
rs1436616255 315 dbSNP
rs1284625005 318 dbSNP
rs754974616 320 dbSNP
rs1016061084 321 dbSNP
rs1036080186 330 dbSNP
rs1478503903 334 dbSNP
rs1341142570 337 dbSNP
rs1207830968 338 dbSNP
rs1267022142 339 dbSNP
rs1004293316 365 dbSNP
rs1246381087 366 dbSNP
rs547760012 369 dbSNP
rs1261070580 371 dbSNP
rs972065739 378 dbSNP
rs1477782556 384 dbSNP
rs1171935800 389 dbSNP
rs962030893 390 dbSNP
rs1045691577 391 dbSNP
rs1220477724 398 dbSNP
rs1163002415 408 dbSNP
rs1489485293 411 dbSNP
rs565532026 419 dbSNP
rs774319983 420 dbSNP
rs543665403 429 dbSNP
rs751512245 431 dbSNP
rs895039980 438 dbSNP
rs1054987733 448 dbSNP
rs1296285627 458 dbSNP
rs1006264714 459 dbSNP
rs936465580 460 dbSNP
rs1315640244 463 dbSNP
rs1264585746 464 dbSNP
rs1357360516 469 dbSNP
rs1283989129 471 dbSNP
rs1488035527 485 dbSNP
rs888913728 486 dbSNP
rs562487526 488 dbSNP
rs1042568337 489 dbSNP
rs1422554839 494 dbSNP
rs62186361 498 dbSNP
rs1369376263 504 dbSNP
rs912258742 508 dbSNP
rs1165028260 513 dbSNP
rs1358218671 519 dbSNP
rs1060202 528 dbSNP
rs1052518625 530 dbSNP
rs1288912410 534 dbSNP
rs1387111891 535 dbSNP
rs377357115 535 dbSNP
rs1394175316 545 dbSNP
rs903541351 550 dbSNP
rs1383177579 557 dbSNP
rs527662907 564 dbSNP
rs1307427869 568 dbSNP
rs1298569335 571 dbSNP
rs543138653 572 dbSNP
rs145584288 576 dbSNP
rs1482582935 577 dbSNP
rs1200321904 579 dbSNP
rs1257323786 582 dbSNP
rs1343334164 584 dbSNP
rs974276056 586 dbSNP
rs963239424 587 dbSNP
rs1438673965 591 dbSNP
rs1159234141 594 dbSNP
rs764991827 596 dbSNP
rs916059217 597 dbSNP
rs991694189 600 dbSNP
rs1464494726 604 dbSNP
rs938917419 606 dbSNP
rs1015761976 610 dbSNP
rs1406721595 612 dbSNP
rs1433868863 613 dbSNP
rs796081951 617 dbSNP
rs769330159 618 dbSNP
rs1310461801 623 dbSNP
rs1232610586 624 dbSNP
rs1478920614 633 dbSNP
rs1012847789 634 dbSNP
rs895071298 635 dbSNP
rs972306473 644 dbSNP
rs1197200452 645 dbSNP
rs1055420913 647 dbSNP
rs1485199899 652 dbSNP
rs1000785020 656 dbSNP
rs553767446 657 dbSNP
rs538618074 673 dbSNP
rs570415334 678 dbSNP
rs1042208899 681 dbSNP
rs114165757 690 dbSNP
rs536935031 691 dbSNP
rs1360355807 694 dbSNP
rs953528451 699 dbSNP
rs932270734 708 dbSNP
rs1300180831 709 dbSNP
rs920931162 711 dbSNP
rs1386324561 712 dbSNP
rs974770165 714 dbSNP
rs1221368555 716 dbSNP
rs1341964994 720 dbSNP
rs941604306 730 dbSNP
rs908734149 731 dbSNP
rs140076981 737 dbSNP
rs548059476 738 dbSNP
rs1359542654 741 dbSNP
rs529829526 743 dbSNP
rs1487286011 744 dbSNP
rs901687525 744 dbSNP
rs1030901774 745 dbSNP
rs1481381791 746 dbSNP
rs1191347742 748 dbSNP
rs565744567 753 dbSNP
rs999449036 763 dbSNP
rs1466422683 764 dbSNP
rs903488759 765 dbSNP
rs183327770 766 dbSNP
rs1348407671 769 dbSNP
rs1467428341 773 dbSNP
rs947765578 775 dbSNP
rs1347408499 783 dbSNP
rs958735729 786 dbSNP
rs532106130 793 dbSNP
rs761250846 793 dbSNP
rs903738081 794 dbSNP
rs1258634146 813 dbSNP
rs1490714724 816 dbSNP
rs564865013 818 dbSNP
rs745427510 827 dbSNP
rs1021224591 838 dbSNP
rs1241489599 843 dbSNP
rs151064874 846 dbSNP
rs374440141 847 dbSNP
rs1411309486 857 dbSNP
rs1423472989 866 dbSNP
rs544144576 870 dbSNP
rs1164509622 872 dbSNP
rs1367678094 874 dbSNP
rs1242042063 877 dbSNP
rs1297629907 879 dbSNP
rs555082124 884 dbSNP
rs1201197137 885 dbSNP
rs890886714 887 dbSNP
rs1433451233 888 dbSNP
rs1050865645 890 dbSNP
rs928798097 895 dbSNP
rs536407615 897 dbSNP
rs1036539630 898 dbSNP
rs1038028081 901 dbSNP
rs941622583 902 dbSNP
rs1226164218 903 dbSNP
rs940979532 904 dbSNP
rs1305554579 907 dbSNP
rs147546104 909 dbSNP
rs1217776689 910 dbSNP
rs984780864 914 dbSNP
rs1235650924 915 dbSNP
rs1396598747 916 dbSNP
rs561565959 917 dbSNP
rs572604441 918 dbSNP
rs1449133977 920 dbSNP
rs761379019 921 dbSNP
rs1158097607 924 dbSNP
rs572228244 927 dbSNP
rs560164417 935 dbSNP
rs1402964089 936 dbSNP
rs1332839558 938 dbSNP
rs1359095422 938 dbSNP
rs1453892394 938 dbSNP
rs753469620 940 dbSNP
rs1237455731 941 dbSNP
rs757939489 943 dbSNP
rs1370628821 949 dbSNP
rs976593255 950 dbSNP
rs141579846 961 dbSNP
rs1033436996 962 dbSNP
rs760059671 962 dbSNP
rs1427714941 966 dbSNP
rs1204081166 975 dbSNP
rs999437615 977 dbSNP
rs773542080 979 dbSNP
rs1456611346 981 dbSNP
rs967979415 984 dbSNP
rs1181284534 987 dbSNP
rs968388307 992 dbSNP
rs1471239740 993 dbSNP
rs1020842292 1000 dbSNP
rs1429269405 1001 dbSNP
rs1423785051 1002 dbSNP
rs1179073584 1006 dbSNP
rs774923849 1012 dbSNP
rs1009474908 1014 dbSNP
rs1335948776 1020 dbSNP
rs1161743970 1021 dbSNP
rs1011884880 1022 dbSNP
rs894820493 1023 dbSNP
rs1458721673 1025 dbSNP
rs1223968426 1028 dbSNP
rs529387406 1038 dbSNP
rs1315895322 1039 dbSNP
rs867377238 1045 dbSNP
rs191018074 1046 dbSNP
rs1439758300 1048 dbSNP
rs1196879250 1051 dbSNP
rs1479444142 1053 dbSNP
rs1481053381 1056 dbSNP
rs1267049819 1059 dbSNP
rs1461831391 1060 dbSNP
rs907373110 1062 dbSNP
rs1036528242 1066 dbSNP
rs772653397 1071 dbSNP
rs374770614 1083 dbSNP
rs771157466 1094 dbSNP
rs577653292 1096 dbSNP
rs1405012384 1098 dbSNP
rs1049315540 1101 dbSNP
rs1285189803 1109 dbSNP
rs1226491891 1114 dbSNP
rs556280625 1115 dbSNP
rs921931887 1116 dbSNP
rs1047328798 1118 dbSNP
rs976160410 1119 dbSNP
rs950303628 1120 dbSNP
rs1490551261 1122 dbSNP
rs1377753507 1127 dbSNP
rs539335099 1130 dbSNP
rs923769098 1131 dbSNP
rs576240508 1133 dbSNP
rs1428390652 1134 dbSNP
rs1250022013 1135 dbSNP
rs1375071309 1137 dbSNP
rs1055857558 1139 dbSNP
rs571883189 1153 dbSNP
rs1364565641 1156 dbSNP
rs926037635 1163 dbSNP
rs1304411628 1164 dbSNP
rs536406413 1165 dbSNP
rs1381542563 1166 dbSNP
rs1277914032 1168 dbSNP
rs1318732494 1171 dbSNP
rs1022196143 1176 dbSNP
rs1259521098 1177 dbSNP
rs76969753 1183 dbSNP
rs959035114 1184 dbSNP
rs967433677 1186 dbSNP
rs1248288483 1189 dbSNP
rs913217764 1194 dbSNP
rs988096098 1195 dbSNP
rs1035131958 1199 dbSNP
rs74592012 1200 dbSNP
rs538734069 1204 dbSNP
rs1183337993 1207 dbSNP
rs1327316424 1211 dbSNP
rs1384280496 1216 dbSNP
rs1288026783 1218 dbSNP
rs1478313955 1219 dbSNP
rs896932246 1221 dbSNP
rs1361488444 1225 dbSNP
rs1452983940 1227 dbSNP
rs770094839 1228 dbSNP
rs1234279843 1230 dbSNP
rs571252393 1236 dbSNP
rs748221700 1242 dbSNP
rs996641941 1246 dbSNP
rs755274678 1248 dbSNP
rs964151934 1249 dbSNP
rs371260481 1258 dbSNP
rs1383839471 1259 dbSNP
rs1005698313 1260 dbSNP
rs528033648 1263 dbSNP
rs561396700 1264 dbSNP
rs1316468757 1265 dbSNP
rs1239852565 1267 dbSNP
rs1358035447 1272 dbSNP
rs1318375786 1275 dbSNP
rs185071438 1276 dbSNP
rs1203458522 1278 dbSNP
rs1244087705 1280 dbSNP
rs1461494445 1282 dbSNP
rs1184995154 1284 dbSNP
rs1247966632 1286 dbSNP
rs932235048 1288 dbSNP
rs1159159285 1291 dbSNP
rs1365485179 1294 dbSNP
rs527837684 1295 dbSNP
rs900494975 1297 dbSNP
rs896033766 1301 dbSNP
rs1055908459 1304 dbSNP
rs1040818673 1308 dbSNP
rs768728077 1313 dbSNP
rs567756519 1314 dbSNP
rs1309175322 1318 dbSNP
rs1475372869 1320 dbSNP
rs1043171681 1322 dbSNP
rs978188945 1325 dbSNP
rs1223359542 1327 dbSNP
rs183014750 1327 dbSNP
rs946120620 1340 dbSNP
rs1326173738 1347 dbSNP
rs1179995519 1349 dbSNP
rs1480077860 1355 dbSNP
rs1472444374 1356 dbSNP
rs545142279 1361 dbSNP
rs1251959707 1362 dbSNP
rs780390450 1367 dbSNP
rs116033831 1371 dbSNP
rs79035847 1375 dbSNP
rs1429900045 1378 dbSNP
rs12466277 1387 dbSNP
rs1168029065 1388 dbSNP
rs1462653546 1396 dbSNP
rs764728993 1401 dbSNP
rs922488721 1411 dbSNP
rs1214571679 1413 dbSNP
rs544244784 1419 dbSNP
rs975663790 1421 dbSNP
rs866365229 1426 dbSNP
rs1213231545 1427 dbSNP
rs1295251283 1432 dbSNP
rs746829172 1433 dbSNP
rs756257509 1433 dbSNP
rs1276319351 1434 dbSNP
rs1489675950 1434 dbSNP
rs1034672805 1439 dbSNP
rs758108556 1442 dbSNP
rs1005337679 1451 dbSNP
rs1184594428 1467 dbSNP
rs576306326 1469 dbSNP
rs527452609 1470 dbSNP
rs961041849 1471 dbSNP
rs1013852696 1475 dbSNP
rs1015274354 1476 dbSNP
rs536543067 1478 dbSNP
rs1288666144 1479 dbSNP
rs1363158730 1485 dbSNP
rs1005261994 1486 dbSNP
rs1299415784 1491 dbSNP
rs1034593829 1493 dbSNP
rs1244629785 1494 dbSNP
rs1291819958 1495 dbSNP
rs1002176290 1497 dbSNP
rs887914433 1501 dbSNP
rs1028273465 1505 dbSNP
rs750275395 1510 dbSNP
rs1486112986 1517 dbSNP
rs1283502918 1521 dbSNP
rs1203249378 1525 dbSNP
rs14345 1528 dbSNP
rs900776621 1529 dbSNP
rs560310191 1530 dbSNP
rs1164296165 1531 dbSNP
rs946160110 1536 dbSNP
rs944664356 1538 dbSNP
rs891846428 1545 dbSNP
rs553991219 1551 dbSNP
rs1042459842 1552 dbSNP
rs946816981 1553 dbSNP
rs1380165910 1555 dbSNP
rs1451378393 1564 dbSNP
rs915075463 1567 dbSNP
rs1357922644 1569 dbSNP
rs538775763 1572 dbSNP
rs1283529231 1573 dbSNP
rs1051784063 1580 dbSNP
rs1210383139 1581 dbSNP
rs933278605 1582 dbSNP
rs1461046021 1583 dbSNP
rs991083311 1584 dbSNP
rs1398238346 1591 dbSNP
rs1468704044 1594 dbSNP
rs937928454 1602 dbSNP
rs1403808477 1612 dbSNP
rs757033137 1614 dbSNP
rs1459248012 1615 dbSNP
rs927842696 1625 dbSNP
rs758435491 1626 dbSNP
rs1176505892 1630 dbSNP
rs1405738313 1642 dbSNP
rs894421844 1646 dbSNP
rs1337062492 1650 dbSNP
rs982070234 1651 dbSNP
rs1341864669 1655 dbSNP
rs1439459752 1664 dbSNP
rs960989506 1666 dbSNP
rs1278397845 1671 dbSNP
rs1064767 1679 dbSNP
rs942607962 1683 dbSNP
rs983828761 1689 dbSNP
rs191019713 1690 dbSNP
rs952506100 1691 dbSNP
rs1204023743 1702 dbSNP
rs909727577 1704 dbSNP
rs1241235144 1711 dbSNP
rs1203950389 1713 dbSNP
rs984324617 1718 dbSNP
rs1027807062 1719 dbSNP
rs1191015277 1720 dbSNP
rs996718214 1726 dbSNP
rs1473866829 1730 dbSNP
rs1444051100 1735 dbSNP
rs1429196275 1737 dbSNP
rs1480993684 1738 dbSNP
rs537394783 1741 dbSNP
rs900684814 1743 dbSNP
rs1243871826 1749 dbSNP
rs1261042519 1750 dbSNP
rs1407820550 1755 dbSNP
rs951155163 1757 dbSNP
rs1354667323 1761 dbSNP
rs1411117531 1762 dbSNP
rs1321455877 1766 dbSNP
rs111367332 1767 dbSNP
rs766876681 1767 dbSNP
rs1344778166 1775 dbSNP
rs1219420981 1781 dbSNP
rs1276351425 1782 dbSNP
rs1019574750 1786 dbSNP
rs1339147344 1790 dbSNP
rs992524634 1794 dbSNP
rs1009159294 1802 dbSNP
rs143881414 1806 dbSNP
rs1484115842 1810 dbSNP
rs1450892757 1815 dbSNP
rs1341572540 1819 dbSNP
rs1001828673 1822 dbSNP
rs1336865127 1833 dbSNP
rs1042449971 1840 dbSNP
rs1371635988 1849 dbSNP
rs1451307005 1852 dbSNP
rs10892 1853 dbSNP
rs1167029034 1855 dbSNP
rs562686969 1856 dbSNP
rs1055229729 1862 dbSNP
rs1410175799 1862 dbSNP
rs1221691209 1863 dbSNP
rs560342889 1864 dbSNP
rs565084282 1865 dbSNP
rs927822420 1869 dbSNP
rs11897278 1870 dbSNP
rs1324529498 1872 dbSNP
rs773693141 1876 dbSNP
rs562812203 1881 dbSNP
rs544605234 1883 dbSNP
rs1344560181 1884 dbSNP
rs1243904205 1888 dbSNP
rs76284946 1890 dbSNP
rs1360802622 1893 dbSNP
rs1460049848 1904 dbSNP
rs933371811 1907 dbSNP
rs376419718 1913 dbSNP
rs1260252193 1916 dbSNP
rs908217117 1919 dbSNP
rs373395059 1928 dbSNP
rs115328890 1932 dbSNP
rs1450901422 1934 dbSNP
rs117218138 1935 dbSNP
rs942637238 1943 dbSNP
rs1457958858 1945 dbSNP
rs1165002441 1949 dbSNP
rs909767870 1950 dbSNP
rs1230357140 1951 dbSNP
rs1320927569 1955 dbSNP
rs572358586 1960 dbSNP
rs1450640763 1961 dbSNP
rs1314483070 1962 dbSNP
rs1322471718 1966 dbSNP
rs573311376 1968 dbSNP
rs776869979 1968 dbSNP
rs918402489 1972 dbSNP
rs114465317 1973 dbSNP
rs1270337252 1980 dbSNP
rs137952649 1983 dbSNP
rs1019143419 1985 dbSNP
rs1009149584 1988 dbSNP
rs1423929590 1989 dbSNP
rs1353525197 1990 dbSNP
rs1188994033 1991 dbSNP
rs1362017951 1994 dbSNP
rs1326396236 2000 dbSNP
rs1406904498 2006 dbSNP
rs1390493698 2011 dbSNP
rs545010426 2011 dbSNP
rs1020954378 2014 dbSNP
rs555943485 2017 dbSNP
rs980136161 2020 dbSNP
rs1304911770 2022 dbSNP
rs145346443 2022 dbSNP
rs969014816 2023 dbSNP
rs141789883 2025 dbSNP
rs1055579727 2042 dbSNP
rs1002301739 2043 dbSNP
rs1010478939 2051 dbSNP
rs906352670 2055 dbSNP
rs1046256318 2057 dbSNP
rs572515450 2064 dbSNP
rs908497790 2072 dbSNP
rs1048314929 2079 dbSNP
rs554917993 2083 dbSNP
rs1483345972 2084 dbSNP
rs534254714 2085 dbSNP
rs74832529 2086 dbSNP
rs1030499664 2089 dbSNP
rs920945734 2092 dbSNP
rs997633153 2107 dbSNP
rs1414047234 2108 dbSNP
rs1479359591 2109 dbSNP
rs1175380746 2125 dbSNP
rs745641074 2129 dbSNP
rs1359995311 2134 dbSNP
rs975559084 2135 dbSNP
rs1296535439 2137 dbSNP
rs186568399 2138 dbSNP
rs965196633 2139 dbSNP
rs533316398 2141 dbSNP
rs1039055892 2144 dbSNP
rs1223976532 2149 dbSNP
rs1344151374 2149 dbSNP
rs1006607632 2153 dbSNP
rs1279396595 2156 dbSNP
rs887773447 2156 dbSNP
rs1312418276 2159 dbSNP
rs569426556 2168 dbSNP
rs1249250757 2169 dbSNP
rs550842850 2174 dbSNP
rs150128377 2177 dbSNP
rs1220973744 2180 dbSNP
rs929893837 2182 dbSNP
rs987666453 2185 dbSNP
rs1198426766 2186 dbSNP
rs1425533789 2189 dbSNP
rs1434674074 2191 dbSNP
rs562101573 2194 dbSNP
rs1372689503 2203 dbSNP
rs1308558713 2211 dbSNP
rs753270481 2216 dbSNP
rs1371927726 2218 dbSNP
rs1364286631 2226 dbSNP
rs77878964 2230 dbSNP
rs1021194814 2233 dbSNP
rs1294505312 2236 dbSNP
rs1370256763 2241 dbSNP
rs1491175718 2242 dbSNP
rs147465151 2243 dbSNP
rs1056860340 2245 dbSNP
rs1011166197 2252 dbSNP
rs1228535467 2261 dbSNP
rs938436601 2264 dbSNP
rs1357207870 2268 dbSNP
rs181622884 2273 dbSNP
rs958246047 2274 dbSNP
rs1033721255 2278 dbSNP
rs1302291601 2280 dbSNP
rs1489363665 2298 dbSNP
rs1002698238 2301 dbSNP
rs753779078 2302 dbSNP
rs1422723928 2307 dbSNP
rs189144149 2311 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
     
Conditions Flp-In T-REx 293-hAGO1 cells
Location of target site 3'UTR
Original Description (Extracted from the article) ... Validation of interactions identified by CLASH suppports their reliability. ...

- Helwak A; Kudla G; Dudnakova T; Tollervey D, 2013, Cell.

Article - Helwak A; Kudla G; Dudnakova T; Tollervey D
- Cell, 2013
MicroRNAs (miRNAs) play key roles in gene regulation, but reliable bioinformatic or experimental identification of their targets remains difficult. To provide an unbiased view of human miRNA targets, we developed a technique for ligation and sequencing of miRNA-target RNA duplexes associated with human AGO1. Here, we report data sets of more than 18,000 high-confidence miRNA-mRNA interactions. The binding of most miRNAs includes the 5' seed region, but around 60% of seed interactions are noncanonical, containing bulged or mismatched nucleotides. Moreover, seed interactions are generally accompanied by specific, nonseed base pairing. 18% of miRNA-mRNA interactions involve the miRNA 3' end, with little evidence for 5' contacts, and some of these were functionally validated. Analyses of miRNA:mRNA base pairing showed that miRNA species systematically differ in their target RNA interactions, and strongly overrepresented motifs were found in the interaction sites of several miRNAs. We speculate that these affect the response of RISC to miRNA-target binding.
LinkOut: [PMID: 23622248]
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
KICH 0.305 0.07 0.141 0.25 25 Click to see details
UCEC 0.314 0.1 0.246 0.16 19 Click to see details
PRAD 0.165 0.13 0.136 0.17 50 Click to see details
BRCA 0.126 0.13 0.096 0.19 84 Click to see details
PCPG 0.914 0.13 0.500 0.33 3 Click to see details
THCA -0.142 0.14 -0.161 0.11 59 Click to see details
LIHC -0.15 0.15 -0.110 0.23 49 Click to see details
CESC -0.887 0.15 -1.000 0.5 3 Click to see details
KIRC 0.122 0.16 0.217 0.04 68 Click to see details
KIRP 0.144 0.22 0.145 0.21 32 Click to see details
CHOL -0.239 0.27 -0.300 0.22 9 Click to see details
LUSC -0.092 0.29 -0.081 0.31 38 Click to see details
COAD -0.23 0.29 -0.500 0.1 8 Click to see details
PAAD 0.253 0.37 0.000 0.5 4 Click to see details
BLCA -0.08 0.38 -0.146 0.28 18 Click to see details
LUAD 0.099 0.38 0.126 0.35 12 Click to see details
HNSC 0.02 0.45 0.014 0.46 42 Click to see details
STAD -0.004 0.49 -0.042 0.41 32 Click to see details
ESCA 0.005 0.49 -0.109 0.37 11 Click to see details
ESCA 0.005 0.49 -0.109 0.37 11 Click to see details
ESCA 0.005 0.49 -0.109 0.37 11 Click to see details
195 hsa-miR-1301-3p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT035957 MRPL10 mitochondrial ribosomal protein L10 1 1
MIRT035958 ZNF816 zinc finger protein 816 1 1
MIRT035959 HDLBP high density lipoprotein binding protein 1 1
MIRT035960 GNG10 G protein subunit gamma 10 1 1
MIRT035961 MICALL1 MICAL like 1 1 1
MIRT035962 CCNH cyclin H 1 1
MIRT035963 RAD23B RAD23 homolog B, nucleotide excision repair protein 1 1
MIRT035964 HIST2H2AC histone cluster 2 H2A family member c 1 1
MIRT035965 PARL presenilin associated rhomboid like 1 1
MIRT035966 TXN thioredoxin 1 1
MIRT035967 CREBBP CREB binding protein 1 1
MIRT035968 CYTB cytochrome b 1 1
MIRT035969 GLI3 GLI family zinc finger 3 1 1
MIRT035970 HMGCS1 3-hydroxy-3-methylglutaryl-CoA synthase 1 1 1
MIRT035971 PREP prolyl endopeptidase 1 1
MIRT035972 COL6A1 collagen type VI alpha 1 chain 1 1
MIRT035973 ATP5A1 ATP synthase, H+ transporting, mitochondrial F1 complex, alpha subunit 1, cardiac muscle 1 1
MIRT035974 ADCY3 adenylate cyclase 3 1 1
MIRT035975 POLB DNA polymerase beta 1 1
MIRT035976 HMGA1 high mobility group AT-hook 1 1 1
MIRT035977 SKP1 S-phase kinase associated protein 1 1 1
MIRT035978 ADD2 adducin 2 1 1
MIRT035979 ANXA11 annexin A11 1 1
MIRT035980 CORO1C coronin 1C 1 1
MIRT035981 MDH2 malate dehydrogenase 2 1 1
MIRT035982 BICD2 BICD cargo adaptor 2 1 1
MIRT035983 SPTBN1 spectrin beta, non-erythrocytic 1 1 1
MIRT035984 CDK5RAP2 CDK5 regulatory subunit associated protein 2 1 1
MIRT035985 POLR3H RNA polymerase III subunit H 1 1
MIRT035986 COX1 cytochrome c oxidase subunit I 1 1
MIRT035987 HEATR2 dynein axonemal assembly factor 5 1 1
MIRT035988 RPS5 ribosomal protein S5 1 1
MIRT035989 CCT3 chaperonin containing TCP1 subunit 3 1 1
MIRT035990 YWHAB tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein beta 1 1
MIRT035991 RPL3 ribosomal protein L3 1 1
MIRT035992 TMPO thymopoietin 1 1
MIRT035993 COPE coatomer protein complex subunit epsilon 1 1
MIRT035994 NONO non-POU domain containing octamer binding 1 1
MIRT035995 BLCAP bladder cancer associated protein 1 1
MIRT035996 NUP133 nucleoporin 133 1 1
MIRT035997 VCP valosin containing protein 1 1
MIRT035998 ARIH2 ariadne RBR E3 ubiquitin protein ligase 2 1 1
MIRT035999 SON SON DNA binding protein 1 1
MIRT036000 ATP5J ATP synthase, H+ transporting, mitochondrial Fo complex subunit F6 1 1
MIRT036001 VIM vimentin 1 1
MIRT036002 FKBP8 FK506 binding protein 8 1 1
MIRT036003 SPECC1L sperm antigen with calponin homology and coiled-coil domains 1 like 1 1
MIRT036004 ZCCHC14 zinc finger CCHC-type containing 14 1 1
MIRT036005 TXNL4A thioredoxin like 4A 1 1
MIRT036006 UBE2J2 ubiquitin conjugating enzyme E2 J2 1 1
MIRT036007 FOPNL FGFR1OP N-terminal like 1 1
MIRT036008 VDAC1 voltage dependent anion channel 1 1 1
MIRT036009 CDIP1 cell death inducing p53 target 1 1 1
MIRT036010 EBNA1BP2 EBNA1 binding protein 2 1 1
MIRT036011 CD276 CD276 molecule 1 1
MIRT036012 RPS2 ribosomal protein S2 1 1
MIRT036013 USP28 ubiquitin specific peptidase 28 1 1
MIRT036014 ZMIZ1 zinc finger MIZ-type containing 1 1 1
MIRT036015 B4GALT7 beta-1,4-galactosyltransferase 7 1 1
MIRT036016 CAND1 cullin associated and neddylation dissociated 1 1 1
MIRT036017 CCDC104 cilia and flagella associated protein 36 1 1
MIRT036018 IMPDH1 inosine monophosphate dehydrogenase 1 1 1
MIRT036019 ATXN2L ataxin 2 like 1 1
MIRT036020 PARP1 poly(ADP-ribose) polymerase 1 1 1
MIRT036021 TNXB tenascin XB 1 1
MIRT036022 SYNGR1 synaptogyrin 1 1 1
MIRT036023 TUT1 terminal uridylyl transferase 1, U6 snRNA-specific 1 1
MIRT036024 ATXN7L3B ataxin 7 like 3B 1 1
MIRT036025 BCL2L13 BCL2 like 13 1 1
MIRT036026 RBM42 RNA binding motif protein 42 1 1
MIRT036027 HDGF heparin binding growth factor 1 1
MIRT036028 NAT8L N-acetyltransferase 8 like 1 1
MIRT036029 DLST dihydrolipoamide S-succinyltransferase 1 1
MIRT036030 CEP104 centrosomal protein 104 1 1
MIRT036031 NCOR1 nuclear receptor corepressor 1 1 1
MIRT036032 COCH cochlin 1 1
MIRT036033 NUTF2 nuclear transport factor 2 1 1
MIRT036034 KMT2E lysine methyltransferase 2E 1 1
MIRT036035 RANGAP1 Ran GTPase activating protein 1 1 1
MIRT036036 SEPHS2 selenophosphate synthetase 2 1 1
MIRT036037 DYNC1I2 dynein cytoplasmic 1 intermediate chain 2 1 1
MIRT036038 ZCCHC24 zinc finger CCHC-type containing 24 1 1
MIRT036039 TRRAP transformation/transcription domain associated protein 1 1
MIRT036040 INPP4A inositol polyphosphate-4-phosphatase type I A 1 1
MIRT036041 CHN1 chimerin 1 1 1
MIRT036042 FECH ferrochelatase 1 1
MIRT036043 DCTD dCMP deaminase 1 1
MIRT036044 UBA1 ubiquitin like modifier activating enzyme 1 1 1
MIRT036045 PKM pyruvate kinase, muscle 1 1
MIRT036046 SSRP1 structure specific recognition protein 1 1 1
MIRT036047 CELF1 CUGBP Elav-like family member 1 1 1
MIRT036048 TSR2 TSR2, ribosome maturation factor 1 1
MIRT036049 TP53BP2 tumor protein p53 binding protein 2 1 1
MIRT036050 GSG2 histone H3 associated protein kinase 1 1
MIRT036051 WDFY1 WD repeat and FYVE domain containing 1 1 1
MIRT036052 RPA1 replication protein A1 1 1
MIRT036053 TMEM41A transmembrane protein 41A 1 1
MIRT036054 BIRC5 baculoviral IAP repeat containing 5 1 1
MIRT036055 NOP2 NOP2 nucleolar protein 1 1
MIRT036056 PEF1 penta-EF-hand domain containing 1 1 1
MIRT036057 CYB5D1 cytochrome b5 domain containing 1 1 1
MIRT036058 HIGD1A HIG1 hypoxia inducible domain family member 1A 1 1
MIRT036059 WDR61 WD repeat domain 61 1 1
MIRT036060 MINK1 misshapen like kinase 1 1 1
MIRT036061 RPL35A ribosomal protein L35a 1 1
MIRT036062 WNT3 Wnt family member 3 1 1
MIRT036063 SYNJ2 synaptojanin 2 1 1
MIRT036064 CFL1 cofilin 1 1 1
MIRT036065 ALDOA aldolase, fructose-bisphosphate A 1 1
MIRT036066 HIF1AN hypoxia inducible factor 1 alpha subunit inhibitor 1 1
MIRT064841 ZBTB18 zinc finger and BTB domain containing 18 2 4
MIRT090782 MBNL1 muscleblind like splicing regulator 1 2 2
MIRT163227 EDEM1 ER degradation enhancing alpha-mannosidase like protein 1 2 2
MIRT214143 LMNB1 lamin B1 2 2
MIRT291875 ZNF333 zinc finger protein 333 2 2
MIRT292477 ZNF507 zinc finger protein 507 2 2
MIRT306035 SKIL SKI like proto-oncogene 2 2
MIRT443004 TRIOBP TRIO and F-actin binding protein 2 2
MIRT457830 ITPRIP inositol 1,4,5-trisphosphate receptor interacting protein 2 2
MIRT460067 RFTN2 raftlin family member 2 2 2
MIRT460342 ARL14EP ADP ribosylation factor like GTPase 14 effector protein 2 2
MIRT463060 ZNF639 zinc finger protein 639 2 2
MIRT466204 TMED10 transmembrane p24 trafficking protein 10 2 2
MIRT476159 GOLGA8B golgin A8 family member B 2 2
MIRT486953 HLA-B major histocompatibility complex, class I, B 2 2
MIRT492391 SEMA6A semaphorin 6A 2 2
MIRT495050 CTRC chymotrypsin C 2 4
MIRT500010 ABCF2 ATP binding cassette subfamily F member 2 2 8
MIRT501565 PLEKHF2 pleckstrin homology and FYVE domain containing 2 2 4
MIRT502680 CSNK1G3 casein kinase 1 gamma 3 2 8
MIRT503058 CAB39 calcium binding protein 39 2 2
MIRT504615 PLK1 polo like kinase 1 2 2
MIRT505706 SESN2 sestrin 2 2 2
MIRT506197 PHF19 PHD finger protein 19 2 2
MIRT506821 KIF23 kinesin family member 23 2 6
MIRT513782 PAWR pro-apoptotic WT1 regulator 2 6
MIRT527011 MAGI2 membrane associated guanylate kinase, WW and PDZ domain containing 2 2 4
MIRT527806 KLRD1 killer cell lectin like receptor D1 2 2
MIRT537896 DYRK2 dual specificity tyrosine phosphorylation regulated kinase 2 2 4
MIRT537925 DST dystonin 2 2
MIRT540049 FOXC1 forkhead box C1 2 2
MIRT543395 DROSHA drosha ribonuclease III 2 2
MIRT545447 SC5D sterol-C5-desaturase 2 4
MIRT546876 RAB10 RAB10, member RAS oncogene family 2 4
MIRT549419 ACVR2B activin A receptor type 2B 2 2
MIRT551857 ASB6 ankyrin repeat and SOCS box containing 6 2 2
MIRT552453 ZNF410 zinc finger protein 410 2 2
MIRT552772 YIPF6 Yip1 domain family member 6 2 4
MIRT552788 YAF2 YY1 associated factor 2 2 2
MIRT554247 SLAIN2 SLAIN motif family member 2 2 2
MIRT554773 RHEBP1 RHEB pseudogene 1 2 4
MIRT555862 PAIP1 poly(A) binding protein interacting protein 1 2 2
MIRT556475 LIPA lipase A, lysosomal acid type 2 2
MIRT556655 KMT2D lysine methyltransferase 2D 2 4
MIRT558210 EFCAB14 EF-hand calcium binding domain 14 2 4
MIRT558306 DUSP14 dual specificity phosphatase 14 2 2
MIRT558818 CDCA4 cell division cycle associated 4 2 4
MIRT559370 ATP13A3 ATPase 13A3 2 2
MIRT559541 ARGLU1 arginine and glutamate rich 1 2 4
MIRT563022 ZNF680 zinc finger protein 680 2 2
MIRT563036 NBPF12 NBPF member 12 2 2
MIRT563791 SLC28A1 solute carrier family 28 member 1 2 2
MIRT565903 SCAMP2 secretory carrier membrane protein 2 2 2
MIRT566957 LBR lamin B receptor 2 2
MIRT567971 CPEB3 cytoplasmic polyadenylation element binding protein 3 2 2
MIRT570389 TSC22D2 TSC22 domain family member 2 2 2
MIRT575250 Timp3 tissue inhibitor of metalloproteinase 3 2 2
MIRT611519 ZNF25 zinc finger protein 25 2 2
MIRT611592 POTED POTE ankyrin domain family member D 2 2
MIRT614228 NPTXR neuronal pentraxin receptor 2 2
MIRT625933 SCYL3 SCY1 like pseudokinase 3 2 2
MIRT627320 TULP4 tubby like protein 4 2 2
MIRT631516 CTBS chitobiase 2 2
MIRT640705 MRS2 MRS2, magnesium transporter 2 2
MIRT642208 RUVBL2 RuvB like AAA ATPase 2 2 2
MIRT642767 FAM9C family with sequence similarity 9 member C 2 2
MIRT648411 KIAA0146 scaffolding protein involved in DNA repair 1 1
MIRT658045 FUT11 fucosyltransferase 11 2 2
MIRT663720 GLUL glutamate-ammonia ligase 2 2
MIRT698536 TFRC transferrin receptor 2 2
MIRT699988 RPS24 ribosomal protein S24 2 2
MIRT700433 PURB purine rich element binding protein B 2 2
MIRT705890 ADCY9 adenylate cyclase 9 2 2
MIRT706974 XPO5 exportin 5 2 2
MIRT710564 KIAA1958 KIAA1958 2 2
MIRT714070 RUNDC3B RUN domain containing 3B 2 2
MIRT716931 FAM13A family with sequence similarity 13 member A 2 2
MIRT717341 RAB40A RAB40A, member RAS oncogene family 2 2
MIRT717738 MYLK myosin light chain kinase 5 2
MIRT722963 SLC25A26 solute carrier family 25 member 26 2 2
MIRT723470 WIPF2 WAS/WASL interacting protein family member 2 2 2
MIRT732447 STAT3 signal transducer and activator of transcription 3 2 0
MIRT733631 SIRT1 sirtuin 1 3 0
MIRT733632 CCND1 cyclin D1 3 0
MIRT736012 RHEB Ras homolog, mTORC1 binding 3 0
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-mir-1301 Cisplatin 5460033 NSC119875 approved resistant High Gastric Cancer cell line (SGC-7901)
hsa-mir-1301 Cisplatin 5460033 NSC119875 approved resistant High Gastric Cancer cell line (BGC823)
hsa-mir-1301 Dabrafenib 44462760 NSC764134 approved resistant cell line (A375)
hsa-mir-1301 Paclitaxel 36314 NSC125973 approved sensitive cell line (W1)
hsa-mir-1301 Topotecan 60699 NSC609699 approved sensitive cell line (W1)
hsa-mir-1301 Androstenedione 6128 NSC9563 sensitive cell line (MCF-7)
hsa-mir-1301 Androstenedione+Letrozole sensitive cell line (MCF-7)
hsa-mir-1301 Cisplatin 5460033 NSC119875 approved sensitive cell line (BxPC3)
hsa-mir-1301 Cisplatin 5460033 NSC119875 approved resistant cell line (SGC-7901)
hsa-mir-1301 Cisplatin 5460033 NSC119875 approved resistant cell line (BGC-823)
hsa-miR-1301-3p Oxaliplatin 6857599 NSC266046 approved sensitive High Colorectal Cancer cell line (RKO)
hsa-miR-1301-3p Gemcitabine 60750 NSC613327 approved resistant High Pancreatic Cancer cell line (SW1990)
hsa-miR-1301-3p Gemcitabine 60750 NSC613327 approved sensitive High Pancreatic Cancer cell line (SW1990)
hsa-miR-1301-3p Plx-4720 24180719 NSC757438 sensitive High Thyroid Cancer cell line (8505c, BCPAP)
hsa-miR-1301-3p Imatinib 5291 NSC743414 approved sensitive Low Chronic Myelogenous Leukemia cell line (K562)
hsa-miR-1301-3p Cisplatin 5460033 NSC119875 approved sensitive High Pancreatic Cancer cell line (BxPC-3)
hsa-miR-1301-3p Dabrafenib 44462760 NSC764134 approved sensitive High Melanoma cell line (A375, IGR37, 501Mel)
hsa-miR-1301-3p Vemurafenib 42611257 NSC761431 approved sensitive High Melanoma cell line (A375, IGR37, 501Mel)
hsa-miR-1301-3p Cisplatin 5460033 NSC119875 approved resistant High Gastric Cancer tissue
hsa-miR-1301-3p Fluorouracil 3385 NSC19893 approved resistant High Gastric Cancer tissue
hsa-miR-1301-3p Trametinib 11707110 NSC758246 approved sensitive High Melanoma cell line (M14) (2uM)
hsa-miR-1301-3p Vemurafenib 42611257 NSC761431 approved sensitive High Melanoma cell line (M14) (50nM)
hsa-miR-1301-3p Vemurafenib 42611257 NSC761431 approved sensitive High Melanoma cell line (M14) (2uM)
hsa-miR-1301-3p Trametinib 11707110 NSC758246 approved sensitive High Melanoma cell line (M14) (50nM)
hsa-miR-1301-3p Epirubicin 41867 NSC256942 approved sensitive Low Osteosarcoma cell line (U-2-OS, SAOS-2)
hsa-miR-1301-3p Gemcitabine 60750 NSC613327 approved resistant High Pancreatic Cancer cell line (AsPC-1)
hsa-miR-1301-3p Cisplatin 5460033 NSC119875 approved resistant High Gastric Cancer cell line (SGC-7901, BGC-823)
hsa-miR-1301-3p Cisplatin 5460033 NSC119875 approved resistant High Ovarian Cancer cell line (A2780CP20)
hsa-miR-1301-3p Cisplatin 5460033 NSC119875 approved resistant High Non-Small Cell Lung Cancer cell line (A549)
hsa-miR-1301-3p Oxaliplatin 6857599 NSC266046 approved sensitive High Colorectal Cancer cell line (SW480, HCT-116)
hsa-miR-1301-3p Cisplatin 5460033 NSC119875 approved sensitive High Epithelial Ovarian Cancer cell line (SKOV3)
hsa-miR-1301-3p Gefitinib 123631 NSC715055 approved resistant cell line (HCC827)
hsa-miR-1301-3p Osimertinib 71496458 NSC779217 approved sensitive cell line (HCC827)
hsa-miR-1301-3p Vemurafenib 42611257 NSC761431 approved resistant cell line (451Lu)
hsa-miR-1301-3p Palbociclib 5330286 NSC758247 approved resistant tissue (breast cancer)
hsa-miR-1301-3p Cisplatin 5460033 NSC119875 approved sensitive cell line
hsa-miR-1301-3p Doxorubicin 31703 NSC123127 approved sensitive cell line (HS578T)
hsa-miR-1301-3p Cisplatin 5460033 NSC119875 approved resistant cell line (A549)
hsa-miR-1301-3p Tamoxifen+Fulvestrant resistant cell line (LCC9)
hsa-miR-1301-3p Cisplatin 5460033 NSC119875 approved resistant cell line (CP20)
hsa-miR-1301-3p Cisplatin 5460033 NSC119875 approved resistant cell line (CIS)
hsa-miR-1301-3p 4-Hydroxytamoxifen+Tamoxifen sensitive cell line (LY2)
hsa-miR-1301-3p Ethanol+Tamoxifen sensitive cell line (LY2)
hsa-miR-1301-3p Cisplatin 5460033 NSC119875 approved resistant cell line (RPMI2650)
hsa-miR-1301-3p Cisplatin 5460033 NSC119875 approved sensitive cell line (A549)

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