miRTarBase - #MIRT035967


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pre-miRNA Information
pre-miRNA hsa-mir-1301   
Genomic Coordinates chr2: 25328640 - 25328721
Synonyms MIRN1301, hsa-mir-1301, MIR1301
Description Homo sapiens miR-1301 stem-loop
Comment None
RNA Secondary Structure
Associated Diseases

Mature miRNA Information
Mature miRNA hsa-miR-1301-3p
Sequence 48| UUGCAGCUGCCUGGGAGUGACUUC |71
Evidence Experimental
Experiments Illumina
Editing Events in miRNAs
Modification Type Position on miR Chromosome DNA Strand Genomic Position (hg38) List of PMIDs Variant details
A-to-I 5 2 - 25328670 26449202, 27298257, 28411194, 28550310, 28855684, 29267965, 29950133, 29165639, 29233923 MiREDiBase
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs775188648 6 dbSNP
rs1022364375 11 dbSNP
rs938368115 12 dbSNP
rs771728471 15 dbSNP
rs778709428 19 dbSNP
rs1358947891 20 dbSNP
Putative Targets

miRNA Expression profile
Human miRNA Tissue Atlas
miRNAs in Extracellular Vesicles
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol CREBBP   
Synonyms CBP, KAT3A, RSTS, RSTS1
Description CREB binding protein
Transcript NM_001079846   
Other Transcripts NM_004380   
Expression
Putative miRNA Targets on CREBBP
3'UTR of CREBBP
(miRNA target sites are highlighted)		 
>CREBBP|NM_001079846|3'UTR
   1 CATTGTGAGAGCATCACCTTTTCCCTTTCATGTTCTTGGACCTTTTGTACTGAAAATCCAGGCATCTAGGTTCTTTTTAT
  81 TCCTAGATGGAACTGCGACTTCCGAGCCATGGAAGGGTGGATTGATGTTTAAAGAAACAATACAAAGAATATATTTTTTT
 161 GTTAAAAACCAGTTGATTTAAATATCTGGTCTCTCTCTTTGGTTTTTTTTTGGCGGGGGGGTGGGGGGGGTTCTTTTTTT
 241 TCCGTTTTGTTTTTGTTTGGGGGGAGGGGGGTTTTGTTTGGATTCTTTTTGTCGTCATTGCTGGTGACTCATGCCTTTTT
 321 TTAACGGGAAAAACAAGTTCATTATATTCATATTTTTTATTTGTATTTTCAAGACTTTAAACATTTATGTTTAAAAGTAA
 401 GAAGAAAAATAATATTCAGAACTGATTCCTGAAATAATGCAAGCTTATAATGTATCCCGATAACTTTGTGATGTTTCGGG
 481 AAGATTTTTTTCTATAGTGAACTCTGTGGGCGTCTCCCAGTATTACCCTGGATGATAGGAATTGACTCCGGCGTGCACAC
 561 ACGTACACACCCACACACATCTATCTATACATAATGGCTGAAGCCAAACTTGTCTTGCAGATGTAGAAATTGTTGCTTTG
 641 TTTCTCTGATAAAACTGGTTTTAGACAAAAAATAGGGATGATCACTCTTAGACCATGCTAATGTTACTAGAGAAGAAGCC
 721 TTCTTTTCTTTCTTCTATGTGAAACTTGAAATGAGGAAAAGCAATTCTAGTGTAAATCATGCAAGCGCTCTAATTCCTAT
 801 AAATACGAAACTCGAGAAGATTCAATCACTGTATAGAATGGTAAAATACCAACTCATTTCTTATATCATATTGTTAAATA
 881 AACTGTGTGCAACAGACAAAAAGGGTGGTCCTTCTTGAATTCATGTACATGGTATTAACACTTAGTGTTCGGGGTTTTTT
 961 GTTATGAAAATGCTGTTTTCAACATTGTATTTGGACTATGCATGTGTTTTTTCCCCATTGTATATAAAGTACCGCTTAAA
1041 ATTGATATAAATTACTGAGGTTTTTAACATGTATTCTGTTCTTTAAGATCCCTGTAAGAATGTTTAAGGTTTTTATTTAT
1121 TTATATATATTTTTTGAGTCTGTTCTTTGTAAGACATGGTTCTGGTTGTTCGCTCATAGCGGAGAGGCTGGGGCTGCGGT
1201 TGTGGTTGTGGCGGCGTGGGTGGTGGCTGGGAACTGTGGCCCAGGCTTAGCGGCCGCCCGGAGGCTTTTCTTCCCGGAGA
1281 CTGAGGTGGGCGACTGAGGTGGGCGGCTCAGCGTTGGCCCCACACATTCGAGGCTCACAGGTGATTGTCGCTCACACAGT
1361 TAGGGTCGTCAGTTGGTCTGAAACTGCATTTGGCCCACTCCTCCATCCTCCCTGTCCGTCGTAGCTGCCACCCCCAGAGG
1441 CGGCGCTTCTTCCCGTGTTCAGGCGGCTCCCCCCCCCCGTACACGACTCCCAGAATCTGAGGCAGAGAGTGCTCCAGGCT
1521 CGCGAGGTGCTTTCTGACTTCCCCCCAAATCCTGCCGCTGCCGCGCAGCATGTCCCGTGTGGCGTTTGAGGAAATGCTGA
1601 GGGACAGACACCTTGGAGCACCAGCTCCGGTCCCTGTTACAGTGAGAAAGGTCCCCCACTTCGGGGGATACTTGCACTTA
1681 GCCACATGGTCCTGCCTCCCTTGGAGTCCAGTTCCAGGCTCCCTTACTGAGTGGGTGAGACAAGTTCACAAAAACCGTAA
1761 AACTGAGAGGAGGACCATGGGCAGGGGAGCTGAAGTTCATCCCCTAAGTCTACCACCCCCAGCACCCAGAGAACCCACTT
1841 TATCCCTAGTCCCCCAACAAAGGCTGGTCTAGGTGGGGGTGATGGTAATTTTAGAAATCACGCCCCAAATAGCTTCCGTT
1921 TGGGCCCTTACATTCACAGATAGGTTTTAAATAGCTGAATACTTGGTTTGGGAATCTGAATTCGAGGAACCTTTCTAAGA
2001 AGTTGGAAAGGTCCGATCTAGTTTTAGCACAGAGCTTTGAACCTTGAGTTATAAAATGCAGAATAATTCAAGTAAAAATA
2081 AGACCACCATCTGGCACCCCTGACCAGCCCCCATTCACCCCATCCCAGGAGGGGAAGCACAGGCCGGGCCTCCGGTGGAG
2161 ATTGCTGCCACTGCTCGGCCTGCTGGGTTCTTAACCTCCAGTGTCCTCTTCATCTTTTCCACCCGTAGGGAAACCTTGAG
2241 CCATGTGTTCAAACAAGAAGTGGGGCTAGAGCCCGAGAGCAGCAGCTCTAAGCCCACACTCAGAAAGTGGCGCCCTCCTG
2321 GTTGTGCAGCCTTTTAATGTGGGCAGTGGAGGGGCCTCTGTTTCAGGTTATCCTGGAATTCAAAACGTTATGTACCAACC
2401 TCATCCTCTTTGGAGTCTGCATCCTGTGCAACCGTCTTGGGCAATCCAGATGTCGAAGGATGTGACCGAGAGCATGGTCT
2481 GTGGATGCTAACCCTAAGTTTGTCGTAAGGAAATTTCTGTAAGAAACCTGGAAAGCCCCAACGCTGTGTCTCATGCTGTA
2561 TACTTAAGAGGAGAAGAAAAAGTCCTATATTTGTGATCAAAAAGAGGAAACTTGAAATGTGATGGTGTTTATAATAAAAG
2641 ATGGTAAAACTACTTGGATTCAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1 
miRNA  3' cuucAGUGAGGGUC--CGUCGACGuu 5'
              || || :| |  |:||||||  
Target 5' atccTCCCTGTCCGTCGTAGCTGCca 3'
 1405 - 1430 138.00 -18.50
2 
miRNA  3' cuucAGU--GAGGGUCCGUC-GACGUu 5'
              |||  |||:: || || ||||| 
Target 5' aaccTCATCCTCTTTGG-AGTCTGCAt 3'
 2397 - 2422 129.00 -13.70
3 
miRNA  3' cuUCAGUGAGGGUCCGUCGACGUu 5'
            |||:: ||:   | | ||||| 
Target 5' tcAGTTGGTCT---GAAACTGCAt 3'
 1369 - 1389 123.00 -9.20
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
522462 247 ClinVar
COSN30487120 24 COSMIC
COSN30121764 35 COSMIC
COSN30130322 103 COSMIC
COSN31491915 143 COSMIC
COSN18739298 154 COSMIC
COSN31769317 202 COSMIC
COSN29211817 434 COSMIC
COSN31546876 465 COSMIC
COSN31482040 511 COSMIC
COSN26584349 562 COSMIC
COSN26568294 571 COSMIC
COSN31769938 917 COSMIC
COSN1698406 998 COSMIC
COSN31579687 1012 COSMIC
COSN31484069 1044 COSMIC
COSN8499610 1107 COSMIC
COSN31610385 1172 COSMIC
COSN31518210 1192 COSMIC
COSN20112561 1279 COSMIC
COSN27591735 1469 COSMIC
COSN31769937 1711 COSMIC
COSN32063820 1938 COSMIC
COSN17075825 2312 COSMIC
COSN31584755 2576 COSMIC
COSN26868700 2606 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs1007567958 7 dbSNP
rs780837684 10 dbSNP
rs1386623585 11 dbSNP
rs755034771 12 dbSNP
rs751483136 16 dbSNP
rs763197100 17 dbSNP
rs1333924375 18 dbSNP
rs2230140 22 dbSNP
rs199553418 23 dbSNP
rs201047390 26 dbSNP
rs201851173 26 dbSNP
rs1171710566 27 dbSNP
rs568317336 28 dbSNP
rs142721165 29 dbSNP
rs774602465 29 dbSNP
rs923792953 29 dbSNP
rs1345384993 30 dbSNP
rs554483949 32 dbSNP
rs761355594 36 dbSNP
rs1304261477 37 dbSNP
rs753170365 41 dbSNP
rs767800871 42 dbSNP
rs917680914 43 dbSNP
rs1185125180 44 dbSNP
rs760052559 48 dbSNP
rs774794414 51 dbSNP
rs1276841574 58 dbSNP
rs1442765003 63 dbSNP
rs922142096 64 dbSNP
rs147393693 68 dbSNP
rs1244418439 69 dbSNP
rs1374340432 72 dbSNP
rs1319768263 76 dbSNP
rs565641940 82 dbSNP
rs1440221736 83 dbSNP
rs908871433 85 dbSNP
rs777625262 96 dbSNP
rs950988032 98 dbSNP
rs758118196 99 dbSNP
rs912011429 103 dbSNP
rs142933739 104 dbSNP
rs1017728739 106 dbSNP
rs1177485080 108 dbSNP
rs866778193 109 dbSNP
rs1404391128 110 dbSNP
rs1412837512 112 dbSNP
rs1159117730 120 dbSNP
rs950805385 147 dbSNP
rs1336264921 148 dbSNP
rs1007639963 149 dbSNP
rs1422563275 161 dbSNP
rs893170111 161 dbSNP
rs1349696639 163 dbSNP
rs1223691766 169 dbSNP
rs1028080461 181 dbSNP
rs1342182148 182 dbSNP
rs1454959115 186 dbSNP
rs1199405465 188 dbSNP
rs1273168050 189 dbSNP
rs1207973518 193 dbSNP
rs1250038622 194 dbSNP
rs973392641 197 dbSNP
rs1042661759 199 dbSNP
rs1200321570 199 dbSNP
rs969951187 199 dbSNP
rs998832657 199 dbSNP
rs1397347582 201 dbSNP
rs1431523077 203 dbSNP
rs1306127696 206 dbSNP
rs1187212665 210 dbSNP
rs1466691766 211 dbSNP
rs1302885938 212 dbSNP
rs949249041 212 dbSNP
rs1243204280 214 dbSNP
rs1340926528 215 dbSNP
rs1174132463 217 dbSNP
rs1273112006 220 dbSNP
rs1209436180 221 dbSNP
rs1223670587 222 dbSNP
rs1450048543 222 dbSNP
rs976178119 222 dbSNP
rs532228107 223 dbSNP
rs1280949298 227 dbSNP
rs1166569294 229 dbSNP
rs1425288765 230 dbSNP
rs1295066189 231 dbSNP
rs1366655656 231 dbSNP
rs1388358843 231 dbSNP
rs966093068 231 dbSNP
rs1235346500 233 dbSNP
rs1296307791 236 dbSNP
rs1209422543 242 dbSNP
rs1246216543 242 dbSNP
rs1267578026 242 dbSNP
rs1342067297 242 dbSNP
rs1354711236 242 dbSNP
rs1348294215 243 dbSNP
rs1296667743 244 dbSNP
rs1226075054 249 dbSNP
rs1445136660 252 dbSNP
rs1363922020 254 dbSNP
rs1166889865 255 dbSNP
rs368559038 255 dbSNP
rs1289399736 258 dbSNP
rs896305093 260 dbSNP
rs1390365359 261 dbSNP
rs1432534282 262 dbSNP
rs1356974652 263 dbSNP
rs1382941769 264 dbSNP
rs1017589253 265 dbSNP
rs1397069729 265 dbSNP
rs1244535926 269 dbSNP
rs1054832232 271 dbSNP
rs1207104783 272 dbSNP
rs1267561260 276 dbSNP
rs937745745 277 dbSNP
rs1183488755 279 dbSNP
rs1254010564 281 dbSNP
rs1423230801 281 dbSNP
rs1182252650 286 dbSNP
rs567905024 288 dbSNP
rs867343107 289 dbSNP
rs569491710 293 dbSNP
rs1167029812 294 dbSNP
rs1014074793 298 dbSNP
rs908944533 300 dbSNP
rs549775416 304 dbSNP
rs376952863 312 dbSNP
rs1467134201 316 dbSNP
rs1305052630 317 dbSNP
rs928930858 323 dbSNP
rs530340770 325 dbSNP
rs999024790 326 dbSNP
rs904238799 343 dbSNP
rs1352767565 350 dbSNP
rs1226748613 358 dbSNP
rs966271963 362 dbSNP
rs1482298527 363 dbSNP
rs752407316 363 dbSNP
rs1017771792 365 dbSNP
rs1043117934 370 dbSNP
rs932304953 378 dbSNP
rs986236576 379 dbSNP
rs957460016 382 dbSNP
rs1033065558 384 dbSNP
rs998862254 389 dbSNP
rs1482867796 401 dbSNP
rs1205843649 403 dbSNP
rs1253638241 404 dbSNP
rs1482888452 407 dbSNP
rs1180917461 410 dbSNP
rs1429567975 415 dbSNP
rs900792095 424 dbSNP
rs1173342084 428 dbSNP
rs1358116946 429 dbSNP
rs1039291624 432 dbSNP
rs903141676 443 dbSNP
rs190213642 444 dbSNP
rs1309073521 450 dbSNP
rs1372757841 450 dbSNP
rs944882349 459 dbSNP
rs1013909203 477 dbSNP
rs1368566301 478 dbSNP
rs1296172494 479 dbSNP
rs912081720 486 dbSNP
rs1299254704 491 dbSNP
rs1311698527 496 dbSNP
rs561585661 501 dbSNP
rs896345147 506 dbSNP
rs368211307 509 dbSNP
rs1054905131 511 dbSNP
rs541266610 512 dbSNP
rs552303879 526 dbSNP
rs929387352 527 dbSNP
rs1489241834 530 dbSNP
rs1189151665 532 dbSNP
rs920648124 537 dbSNP
rs527930533 548 dbSNP
rs887536279 549 dbSNP
rs1414872731 550 dbSNP
rs973851347 551 dbSNP
rs1195605110 552 dbSNP
rs1305822255 553 dbSNP
rs1463812789 560 dbSNP
rs1355519449 562 dbSNP
rs1438816824 563 dbSNP
rs1292030473 564 dbSNP
rs1366913023 567 dbSNP
rs1164659819 570 dbSNP
rs1435919675 570 dbSNP
rs1299983654 571 dbSNP
rs1339972363 574 dbSNP
rs970023403 578 dbSNP
rs1022864838 587 dbSNP
rs374224689 589 dbSNP
rs1218876133 590 dbSNP
rs1483746756 600 dbSNP
rs992685848 607 dbSNP
rs1188661704 611 dbSNP
rs778506909 623 dbSNP
rs1249845834 624 dbSNP
rs1448179647 637 dbSNP
rs1167867452 643 dbSNP
rs1031929705 644 dbSNP
rs1040657272 645 dbSNP
rs1207611837 646 dbSNP
rs1349500358 653 dbSNP
rs1436179797 675 dbSNP
rs1481481914 681 dbSNP
rs140606942 688 dbSNP
rs545134240 694 dbSNP
rs576108743 696 dbSNP
rs1434222399 700 dbSNP
rs1284741563 703 dbSNP
rs1021369215 706 dbSNP
rs1380986675 707 dbSNP
rs986311564 711 dbSNP
rs1319786053 717 dbSNP
rs957490040 719 dbSNP
rs1274991581 720 dbSNP
rs996545213 721 dbSNP
rs899483370 722 dbSNP
rs967436804 726 dbSNP
rs556160720 732 dbSNP
rs1024711340 734 dbSNP
rs1238569926 735 dbSNP
rs558662947 735 dbSNP
rs960922802 737 dbSNP
rs1180473935 745 dbSNP
rs1040707582 751 dbSNP
rs1457947544 764 dbSNP
rs755459530 765 dbSNP
rs887608753 769 dbSNP
rs1400202618 770 dbSNP
rs1334675184 779 dbSNP
rs879503342 787 dbSNP
rs1350904575 788 dbSNP
rs1397268986 788 dbSNP
rs1229803601 791 dbSNP
rs1286074751 792 dbSNP
rs1327801158 799 dbSNP
rs993641114 802 dbSNP
rs767086157 806 dbSNP
rs373416613 807 dbSNP
rs929488418 812 dbSNP
rs574655119 813 dbSNP
rs944359051 814 dbSNP
rs1473141516 817 dbSNP
rs910814393 823 dbSNP
rs1184234631 825 dbSNP
rs1410055329 827 dbSNP
rs1469873013 831 dbSNP
rs1419971513 837 dbSNP
rs1173233143 839 dbSNP
rs1427410638 846 dbSNP
rs754327524 848 dbSNP
rs1190355453 849 dbSNP
rs1370862031 850 dbSNP
rs973498997 853 dbSNP
rs1487394959 856 dbSNP
rs948745221 864 dbSNP
rs1214287229 867 dbSNP
rs1334798875 871 dbSNP
rs532341326 872 dbSNP
rs1276086978 876 dbSNP
rs759148645 883 dbSNP
rs1217937351 884 dbSNP
rs1280249486 884 dbSNP
rs1265756217 885 dbSNP
rs375715485 890 dbSNP
rs915925853 892 dbSNP
rs977558375 903 dbSNP
rs1250152721 907 dbSNP
rs1437437255 911 dbSNP
rs1199875893 917 dbSNP
rs1379401259 924 dbSNP
rs1477081711 928 dbSNP
rs766761118 929 dbSNP
rs1390697513 932 dbSNP
rs1431621603 934 dbSNP
rs1385417811 945 dbSNP
rs1395570228 945 dbSNP
rs959951062 950 dbSNP
rs1373704824 951 dbSNP
rs1328783479 955 dbSNP
rs554803648 965 dbSNP
rs977694866 971 dbSNP
rs968570568 973 dbSNP
rs1231312877 982 dbSNP
rs1021818215 986 dbSNP
rs1272867837 993 dbSNP
rs958660347 995 dbSNP
rs1210587198 996 dbSNP
rs1033596295 1011 dbSNP
rs1450146486 1013 dbSNP
rs996618935 1015 dbSNP
rs1002069727 1017 dbSNP
rs1248766474 1018 dbSNP
rs1451229556 1022 dbSNP
rs1186621937 1023 dbSNP
rs1454386414 1031 dbSNP
rs951910424 1032 dbSNP
rs963760107 1033 dbSNP
rs993320256 1034 dbSNP
rs897583090 1035 dbSNP
rs1452306690 1040 dbSNP
rs1040088386 1042 dbSNP
rs1437847945 1048 dbSNP
rs1019297532 1066 dbSNP
rs1326152184 1068 dbSNP
rs1245968449 1069 dbSNP
rs1267673958 1071 dbSNP
rs1008980597 1082 dbSNP
rs1007856937 1084 dbSNP
rs888779065 1090 dbSNP
rs34148810 1093 dbSNP
rs534603318 1093 dbSNP
rs1466334373 1097 dbSNP
rs1186523274 1100 dbSNP
rs1260975025 1110 dbSNP
rs1424391022 1115 dbSNP
rs1189361208 1116 dbSNP
rs890739628 1120 dbSNP
rs756547297 1122 dbSNP
rs1366544624 1124 dbSNP
rs1474665099 1125 dbSNP
rs1050697899 1129 dbSNP
rs1390115128 1135 dbSNP
rs1464437449 1136 dbSNP
rs1455196451 1137 dbSNP
rs936223792 1138 dbSNP
rs904755288 1161 dbSNP
rs1397164051 1168 dbSNP
rs572303083 1171 dbSNP
rs773950779 1172 dbSNP
rs1232859704 1173 dbSNP
rs1485928860 1175 dbSNP
rs899312186 1180 dbSNP
rs1037811228 1181 dbSNP
rs917326198 1182 dbSNP
rs1483521000 1184 dbSNP
rs948815023 1187 dbSNP
rs78989292 1190 dbSNP
rs558763100 1196 dbSNP
rs1413689452 1197 dbSNP
rs938690373 1198 dbSNP
rs538759549 1199 dbSNP
rs924554715 1202 dbSNP
rs1377745012 1203 dbSNP
rs1466959578 1205 dbSNP
rs1320879968 1210 dbSNP
rs977348577 1212 dbSNP
rs376154310 1213 dbSNP
rs549516833 1214 dbSNP
rs1352562011 1215 dbSNP
rs1240815319 1216 dbSNP
rs927285049 1218 dbSNP
rs1401632807 1219 dbSNP
rs975208548 1220 dbSNP
rs879039927 1221 dbSNP
rs903829824 1224 dbSNP
rs1205599505 1225 dbSNP
rs957363361 1228 dbSNP
rs1479441108 1239 dbSNP
rs1176289062 1248 dbSNP
rs1267387481 1250 dbSNP
rs536196290 1251 dbSNP
rs1019369576 1252 dbSNP
rs1007930662 1255 dbSNP
rs972315788 1256 dbSNP
rs1372849979 1258 dbSNP
rs951067233 1259 dbSNP
rs1027005459 1260 dbSNP
rs1388575268 1264 dbSNP
rs993781761 1265 dbSNP
rs567146441 1271 dbSNP
rs1347019273 1274 dbSNP
rs1428575554 1275 dbSNP
rs899379726 1276 dbSNP
rs867579617 1279 dbSNP
rs1265679388 1286 dbSNP
rs1489291729 1290 dbSNP
rs113302498 1291 dbSNP
rs752807752 1291 dbSNP
rs766652133 1291 dbSNP
rs386787936 1292 dbSNP
rs894598464 1292 dbSNP
rs1208277556 1293 dbSNP
rs1454205172 1293 dbSNP
rs80164886 1293 dbSNP
rs1422049775 1294 dbSNP
rs375123238 1296 dbSNP
rs1486410793 1297 dbSNP
rs113182995 1306 dbSNP
rs1270451859 1306 dbSNP
rs1635399 1306 dbSNP
rs34630159 1306 dbSNP
rs1204826093 1307 dbSNP
rs1340522599 1308 dbSNP
rs1170258363 1309 dbSNP
rs1350677585 1312 dbSNP
rs1057133031 1313 dbSNP
rs1228852717 1322 dbSNP
rs1459674157 1325 dbSNP
rs938708024 1329 dbSNP
rs1028683030 1330 dbSNP
rs924655701 1337 dbSNP
rs1299735686 1339 dbSNP
rs904782975 1341 dbSNP
rs1376228165 1345 dbSNP
rs1396420907 1349 dbSNP
rs1042083799 1350 dbSNP
rs1213760708 1351 dbSNP
rs1307679221 1357 dbSNP
rs548111383 1358 dbSNP
rs1211495942 1359 dbSNP
rs946246645 1359 dbSNP
rs1464984413 1363 dbSNP
rs772893885 1364 dbSNP
rs914451578 1367 dbSNP
rs975281024 1368 dbSNP
rs1185082965 1369 dbSNP
rs1415038657 1372 dbSNP
rs1476281826 1379 dbSNP
rs144692279 1385 dbSNP
rs912342904 1386 dbSNP
rs986530338 1392 dbSNP
rs1181060550 1393 dbSNP
rs1322714471 1394 dbSNP
rs1343361925 1395 dbSNP
rs937408994 1396 dbSNP
rs565169280 1401 dbSNP
rs1381106508 1405 dbSNP
rs1025321267 1411 dbSNP
rs3179352 1412 dbSNP
rs1275621903 1416 dbSNP
rs963703226 1417 dbSNP
rs531708637 1418 dbSNP
rs562603203 1420 dbSNP
rs867727493 1421 dbSNP
rs1215731032 1423 dbSNP
rs542660820 1428 dbSNP
rs1018765427 1433 dbSNP
rs1186005107 1441 dbSNP
rs574027491 1442 dbSNP
rs560270968 1444 dbSNP
rs1287943951 1445 dbSNP
rs903230076 1447 dbSNP
rs1041719694 1448 dbSNP
rs1333768794 1450 dbSNP
rs1028715420 1454 dbSNP
rs541345097 1455 dbSNP
rs572342292 1464 dbSNP
rs1410337834 1465 dbSNP
rs1229900767 1466 dbSNP
rs1277213765 1468 dbSNP
rs1389865424 1468 dbSNP
rs1020990661 1469 dbSNP
rs1039628447 1470 dbSNP
rs558800596 1471 dbSNP
rs2286005 1472 dbSNP
rs150542689 1473 dbSNP
rs369136324 1473 dbSNP
rs370838201 1474 dbSNP
rs535953791 1474 dbSNP
rs149315725 1475 dbSNP
rs567290539 1475 dbSNP
rs547057736 1476 dbSNP
rs960332016 1476 dbSNP
rs1437525842 1477 dbSNP
rs962341717 1477 dbSNP
rs571576565 1478 dbSNP
rs1173343548 1479 dbSNP
rs879026614 1479 dbSNP
rs897169094 1479 dbSNP
rs1439297058 1480 dbSNP
rs1182905096 1482 dbSNP
rs1303321866 1482 dbSNP
rs991721445 1484 dbSNP
rs1230058357 1485 dbSNP
rs1268825295 1487 dbSNP
rs1338953706 1488 dbSNP
rs958921065 1489 dbSNP
rs944004010 1490 dbSNP
rs1212926217 1495 dbSNP
rs551569596 1497 dbSNP
rs911816172 1502 dbSNP
rs1245317261 1508 dbSNP
rs1051680708 1509 dbSNP
rs1182358765 1510 dbSNP
rs931838817 1510 dbSNP
rs1035830157 1514 dbSNP
rs1003412668 1519 dbSNP
rs1166685672 1521 dbSNP
rs200431216 1521 dbSNP
rs1391569370 1522 dbSNP
rs903304610 1523 dbSNP
rs375800423 1524 dbSNP
rs968516218 1543 dbSNP
rs1316613149 1546 dbSNP
rs912945021 1547 dbSNP
rs3179351 1548 dbSNP
rs1333038148 1549 dbSNP
rs1232745961 1550 dbSNP
rs893122828 1551 dbSNP
rs1039702838 1552 dbSNP
rs1443085923 1555 dbSNP
rs959934178 1556 dbSNP
rs1394570614 1562 dbSNP
rs565611155 1563 dbSNP
rs1398461314 1564 dbSNP
rs1415196475 1565 dbSNP
rs1474717367 1573 dbSNP
rs761967972 1574 dbSNP
rs562939791 1576 dbSNP
rs891014170 1577 dbSNP
rs1050983509 1578 dbSNP
rs929791157 1583 dbSNP
rs183781082 1584 dbSNP
rs191308240 1586 dbSNP
rs1315264902 1587 dbSNP
rs1196052871 1589 dbSNP
rs187239900 1596 dbSNP
rs1027089838 1597 dbSNP
rs1318848070 1602 dbSNP
rs1236714392 1607 dbSNP
rs996053402 1610 dbSNP
rs540227845 1611 dbSNP
rs897249999 1611 dbSNP
rs1008269756 1620 dbSNP
rs916262870 1627 dbSNP
rs572377260 1628 dbSNP
rs1182485250 1629 dbSNP
rs1213670832 1630 dbSNP
rs565126855 1631 dbSNP
rs1416802139 1636 dbSNP
rs1157804336 1637 dbSNP
rs1363723249 1639 dbSNP
rs1175895719 1640 dbSNP
rs544349484 1640 dbSNP
rs1374051804 1644 dbSNP
rs1285181705 1655 dbSNP
rs931868195 1657 dbSNP
rs928876553 1662 dbSNP
rs981666309 1663 dbSNP
rs1346864118 1670 dbSNP
rs1371607830 1671 dbSNP
rs1042909923 1675 dbSNP
rs768692820 1675 dbSNP
rs967935656 1678 dbSNP
rs377663933 1681 dbSNP
rs1011685935 1682 dbSNP
rs957412761 1687 dbSNP
rs1427988355 1693 dbSNP
rs1346491779 1697 dbSNP
rs1176093113 1698 dbSNP
rs1318556072 1711 dbSNP
rs1018295447 1715 dbSNP
rs1196090749 1716 dbSNP
rs912982523 1719 dbSNP
rs1171633251 1722 dbSNP
rs1373249550 1723 dbSNP
rs988963368 1726 dbSNP
rs1297662529 1727 dbSNP
rs1395348265 1729 dbSNP
rs149345743 1733 dbSNP
rs1301173095 1740 dbSNP
rs76100714 1741 dbSNP
rs1185329032 1742 dbSNP
rs1476421233 1749 dbSNP
rs1242832806 1751 dbSNP
rs1305378101 1755 dbSNP
rs980343126 1755 dbSNP
rs565152311 1756 dbSNP
rs150224533 1757 dbSNP
rs1282755937 1759 dbSNP
rs897000435 1761 dbSNP
rs1038179164 1764 dbSNP
rs1422160414 1765 dbSNP
rs1426917262 1774 dbSNP
rs1170237822 1775 dbSNP
rs1418588318 1777 dbSNP
rs1463064093 1779 dbSNP
rs974272679 1781 dbSNP
rs1393600180 1796 dbSNP
rs1431454373 1799 dbSNP
rs553747903 1804 dbSNP
rs1290362308 1812 dbSNP
rs916293990 1814 dbSNP
rs533504505 1816 dbSNP
rs961843314 1817 dbSNP
rs1213558108 1828 dbSNP
rs1015714723 1829 dbSNP
rs1293545369 1835 dbSNP
rs1336572244 1836 dbSNP
rs1212688902 1838 dbSNP
rs1054756590 1841 dbSNP
rs772102936 1851 dbSNP
rs1451519709 1852 dbSNP
rs939009790 1853 dbSNP
rs928930312 1854 dbSNP
rs982080797 1856 dbSNP
rs1193467063 1857 dbSNP
rs1258479408 1864 dbSNP
rs1312641859 1866 dbSNP
rs1451902729 1867 dbSNP
rs571610394 1869 dbSNP
rs558078722 1873 dbSNP
rs1162849898 1877 dbSNP
rs990282835 1878 dbSNP
rs996821889 1879 dbSNP
rs1161208158 1885 dbSNP
rs957443817 1891 dbSNP
rs1270208038 1895 dbSNP
rs1413648723 1897 dbSNP
rs1353132267 1898 dbSNP
rs1314363300 1899 dbSNP
rs1412602657 1901 dbSNP
rs1292067901 1902 dbSNP
rs538141981 1903 dbSNP
rs376586513 1908 dbSNP
rs776680528 1912 dbSNP
rs569461330 1916 dbSNP
rs759051612 1917 dbSNP
rs745908607 1918 dbSNP
rs994506417 1922 dbSNP
rs1186081374 1923 dbSNP
rs1236935049 1930 dbSNP
rs1179072953 1931 dbSNP
rs1405660058 1931 dbSNP
rs897039101 1932 dbSNP
rs549281952 1933 dbSNP
rs79075099 1937 dbSNP
rs938413659 1938 dbSNP
rs928362894 1939 dbSNP
rs1038616548 1940 dbSNP
rs1005337077 1943 dbSNP
rs529403217 1944 dbSNP
rs1054787376 1964 dbSNP
rs939042320 1966 dbSNP
rs1336037954 1967 dbSNP
rs1181294392 1976 dbSNP
rs1474279780 1978 dbSNP
rs201153295 1983 dbSNP
rs1240078543 1984 dbSNP
rs1281413873 1985 dbSNP
rs1635400 2002 dbSNP
rs1485862328 2004 dbSNP
rs974724455 2007 dbSNP
rs961598353 2011 dbSNP
rs908684955 2013 dbSNP
rs547016419 2015 dbSNP
rs1438940961 2021 dbSNP
rs553144571 2024 dbSNP
rs986966024 2027 dbSNP
rs946298617 2030 dbSNP
rs1171827742 2032 dbSNP
rs1452321344 2032 dbSNP
rs1396766839 2034 dbSNP
rs1250618627 2047 dbSNP
rs1326217491 2050 dbSNP
rs1398927955 2051 dbSNP
rs913444418 2052 dbSNP
rs1382847839 2055 dbSNP
rs1202191688 2058 dbSNP
rs1304839500 2060 dbSNP
rs1373890872 2063 dbSNP
rs1309128464 2065 dbSNP
rs1273662197 2069 dbSNP
rs1232508750 2072 dbSNP
rs1232109765 2084 dbSNP
rs1274697974 2085 dbSNP
rs1340301750 2088 dbSNP
rs771863263 2089 dbSNP
rs747752150 2097 dbSNP
rs1294722830 2099 dbSNP
rs1415082798 2102 dbSNP
rs1457391837 2103 dbSNP
rs1214455915 2104 dbSNP
rs1254786466 2112 dbSNP
rs911334901 2113 dbSNP
rs955457002 2117 dbSNP
rs985561948 2120 dbSNP
rs955457664 2123 dbSNP
rs533409550 2124 dbSNP
rs1028378798 2125 dbSNP
rs1476152909 2132 dbSNP
rs8059201 2136 dbSNP
rs1422224859 2143 dbSNP
rs879147833 2145 dbSNP
rs968036393 2146 dbSNP
rs961632286 2147 dbSNP
rs1385647448 2149 dbSNP
rs184111765 2150 dbSNP
rs754553941 2153 dbSNP
rs1459909565 2154 dbSNP
rs891650210 2157 dbSNP
rs894963071 2158 dbSNP
rs1420172049 2160 dbSNP
rs1165904520 2163 dbSNP
rs531615796 2171 dbSNP
rs192964796 2176 dbSNP
rs756515091 2177 dbSNP
rs906247019 2178 dbSNP
rs1175220531 2180 dbSNP
rs1481513185 2183 dbSNP
rs1233355763 2186 dbSNP
rs1042449618 2187 dbSNP
rs1044123791 2190 dbSNP
rs1213044695 2194 dbSNP
rs1332018813 2195 dbSNP
rs1190821606 2196 dbSNP
rs1261979277 2205 dbSNP
rs1475368614 2208 dbSNP
rs1166447071 2211 dbSNP
rs948424452 2211 dbSNP
rs573633262 2223 dbSNP
rs1163218517 2224 dbSNP
rs188658312 2225 dbSNP
rs1054695484 2234 dbSNP
rs542425636 2235 dbSNP
rs908767259 2237 dbSNP
rs1415643966 2238 dbSNP
rs1295135537 2242 dbSNP
rs1374554713 2243 dbSNP
rs986976652 2249 dbSNP
rs1243913348 2257 dbSNP
rs1261218717 2260 dbSNP
rs911407197 2263 dbSNP
rs184069497 2265 dbSNP
rs975485103 2267 dbSNP
rs1326597463 2268 dbSNP
rs968103256 2269 dbSNP
rs142823437 2274 dbSNP
rs956163210 2275 dbSNP
rs569468762 2280 dbSNP
rs1157175207 2282 dbSNP
rs1360294646 2285 dbSNP
rs558800860 2286 dbSNP
rs1315037484 2288 dbSNP
rs961386426 2289 dbSNP
rs539938276 2293 dbSNP
rs1016827752 2304 dbSNP
rs1395494027 2307 dbSNP
rs984020080 2308 dbSNP
rs1337448509 2312 dbSNP
rs1192931283 2318 dbSNP
rs1237884986 2326 dbSNP
rs907037889 2329 dbSNP
rs1348360499 2331 dbSNP
rs1212510329 2335 dbSNP
rs1254825471 2342 dbSNP
rs959252592 2346 dbSNP
rs1482764521 2351 dbSNP
rs1195863658 2352 dbSNP
rs1033481526 2354 dbSNP
rs1044154828 2356 dbSNP
rs1485277093 2362 dbSNP
rs1003338389 2364 dbSNP
rs117551000 2367 dbSNP
rs898223973 2370 dbSNP
rs764200235 2374 dbSNP
rs1317878248 2379 dbSNP
rs1175963649 2381 dbSNP
rs538684283 2386 dbSNP
rs566521450 2387 dbSNP
rs893495968 2389 dbSNP
rs1053422306 2390 dbSNP
rs1000458775 2392 dbSNP
rs538167515 2395 dbSNP
rs1304855320 2398 dbSNP
rs890004855 2400 dbSNP
rs752714303 2402 dbSNP
rs766344592 2403 dbSNP
rs934169696 2413 dbSNP
rs975516163 2420 dbSNP
rs1252516780 2426 dbSNP
rs1456087731 2431 dbSNP
rs922704211 2433 dbSNP
rs1238072559 2434 dbSNP
rs1037098827 2452 dbSNP
rs1193273239 2454 dbSNP
rs569415301 2455 dbSNP
rs940073959 2458 dbSNP
rs988554666 2459 dbSNP
rs1171430931 2461 dbSNP
rs1375078555 2462 dbSNP
rs1464106797 2465 dbSNP
rs193262955 2467 dbSNP
rs535625078 2468 dbSNP
rs567048198 2474 dbSNP
rs187552100 2477 dbSNP
rs959283878 2485 dbSNP
rs1396767352 2486 dbSNP
rs1031585110 2492 dbSNP
rs1199542319 2492 dbSNP
rs1217479294 2493 dbSNP
rs1427381754 2495 dbSNP
rs760630174 2496 dbSNP
rs926539117 2497 dbSNP
rs375742594 2498 dbSNP
rs1224433502 2504 dbSNP
rs771949537 2505 dbSNP
rs1485951143 2509 dbSNP
rs546740096 2517 dbSNP
rs1476999484 2521 dbSNP
rs1169992178 2523 dbSNP
rs761667070 2527 dbSNP
rs1418674455 2530 dbSNP
rs182274996 2538 dbSNP
rs189649723 2542 dbSNP
rs1454093503 2543 dbSNP
rs957742172 2545 dbSNP
rs1290483532 2550 dbSNP
rs9392 2550 dbSNP
rs1399025441 2563 dbSNP
rs567712178 2564 dbSNP
rs1356846879 2566 dbSNP
rs886768121 2570 dbSNP
rs1321682608 2571 dbSNP
rs570738685 2571 dbSNP
rs1216945147 2574 dbSNP
rs1288624672 2580 dbSNP
rs1487395275 2584 dbSNP
rs550968281 2600 dbSNP
rs1355000901 2604 dbSNP
rs1311323457 2614 dbSNP
rs1258259544 2615 dbSNP
rs1473805956 2619 dbSNP
rs531651621 2623 dbSNP
rs900059419 2624 dbSNP
rs375372620 2629 dbSNP
rs1432593255 2650 dbSNP
rs748838577 2653 dbSNP
rs1412972313 2654 dbSNP
rs890078518 2665 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
     
Conditions Flp-In T-REx 293-hAGO1 cells
Location of target site CDS
Original Description (Extracted from the article) ... Validation of interactions identified by CLASH suppports their reliability. ...

- Helwak A; Kudla G; Dudnakova T; Tollervey D, 2013, Cell.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1 
miRNA  3' cuucagugaGGGUCCGUCGACGuu 5'
                   ||||| |||| ||  
Target 5' -------tcCCCAGCCAGCAGCtc 3'
 		1 - 17
2 
miRNA  3' cuucagugaggguccgucGACGUu 5'
                            |||:: 
Target 5' ccactcagccatcaactcCTGTGt 3'
 		18 - 41
Article - Helwak A; Kudla G; Dudnakova T; Tollervey D
- Cell, 2013
MicroRNAs (miRNAs) play key roles in gene regulation, but reliable bioinformatic or experimental identification of their targets remains difficult. To provide an unbiased view of human miRNA targets, we developed a technique for ligation and sequencing of miRNA-target RNA duplexes associated with human AGO1. Here, we report data sets of more than 18,000 high-confidence miRNA-mRNA interactions. The binding of most miRNAs includes the 5' seed region, but around 60% of seed interactions are noncanonical, containing bulged or mismatched nucleotides. Moreover, seed interactions are generally accompanied by specific, nonseed base pairing. 18% of miRNA-mRNA interactions involve the miRNA 3' end, with little evidence for 5' contacts, and some of these were functionally validated. Analyses of miRNA:mRNA base pairing showed that miRNA species systematically differ in their target RNA interactions, and strongly overrepresented motifs were found in the interaction sites of several miRNAs. We speculate that these affect the response of RISC to miRNA-target binding.
LinkOut: [PMID: 23622248]
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
BRCA -0.187 0.04 -0.158 0.08 84 Click to see details
PCPG 0.986 0.05 1.000 0.5 3 Click to see details
COAD 0.52 0.09 0.476 0.12 8 Click to see details
LIHC 0.183 0.1 0.149 0.15 49 Click to see details
LUSC -0.186 0.13 -0.140 0.2 38 Click to see details
KICH -0.212 0.15 -0.248 0.12 25 Click to see details
BLCA -0.247 0.16 -0.249 0.16 18 Click to see details
LUAD 0.312 0.16 0.217 0.25 12 Click to see details
THCA 0.095 0.24 0.053 0.35 59 Click to see details
KIRP -0.13 0.24 -0.139 0.22 32 Click to see details
PRAD 0.095 0.26 0.137 0.17 50 Click to see details
CESC 0.661 0.27 0.500 0.33 3 Click to see details
CHOL -0.229 0.28 -0.183 0.32 9 Click to see details
ESCA -0.17 0.31 -0.018 0.48 11 Click to see details
UCEC 0.122 0.31 0.104 0.34 19 Click to see details
KIRC -0.048 0.35 -0.073 0.28 68 Click to see details
STAD 0.02 0.46 -0.125 0.25 32 Click to see details
HNSC -0.014 0.46 0.031 0.42 42 Click to see details
PAAD 0.011 0.49 0.600 0.2 4 Click to see details
PAAD 0.011 0.49 0.600 0.2 4 Click to see details
PAAD 0.011 0.49 0.600 0.2 4 Click to see details
195 hsa-miR-1301-3p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT035957 MRPL10 mitochondrial ribosomal protein L10 1 1
MIRT035958 ZNF816 zinc finger protein 816 1 1
MIRT035959 HDLBP high density lipoprotein binding protein 1 1
MIRT035960 GNG10 G protein subunit gamma 10 1 1
MIRT035961 MICALL1 MICAL like 1 1 1
MIRT035962 CCNH cyclin H 1 1
MIRT035963 RAD23B RAD23 homolog B, nucleotide excision repair protein 1 1
MIRT035964 HIST2H2AC histone cluster 2 H2A family member c 1 1
MIRT035965 PARL presenilin associated rhomboid like 1 1
MIRT035966 TXN thioredoxin 1 1
MIRT035967 CREBBP CREB binding protein 1 1
MIRT035968 CYTB cytochrome b 1 1
MIRT035969 GLI3 GLI family zinc finger 3 1 1
MIRT035970 HMGCS1 3-hydroxy-3-methylglutaryl-CoA synthase 1 1 1
MIRT035971 PREP prolyl endopeptidase 1 1
MIRT035972 COL6A1 collagen type VI alpha 1 chain 1 1
MIRT035973 ATP5A1 ATP synthase, H+ transporting, mitochondrial F1 complex, alpha subunit 1, cardiac muscle 1 1
MIRT035974 ADCY3 adenylate cyclase 3 1 1
MIRT035975 POLB DNA polymerase beta 1 1
MIRT035976 HMGA1 high mobility group AT-hook 1 1 1
MIRT035977 SKP1 S-phase kinase associated protein 1 1 1
MIRT035978 ADD2 adducin 2 1 1
MIRT035979 ANXA11 annexin A11 1 1
MIRT035980 CORO1C coronin 1C 1 1
MIRT035981 MDH2 malate dehydrogenase 2 1 1
MIRT035982 BICD2 BICD cargo adaptor 2 1 1
MIRT035983 SPTBN1 spectrin beta, non-erythrocytic 1 1 1
MIRT035984 CDK5RAP2 CDK5 regulatory subunit associated protein 2 1 1
MIRT035985 POLR3H RNA polymerase III subunit H 1 1
MIRT035986 COX1 cytochrome c oxidase subunit I 1 1
MIRT035987 HEATR2 dynein axonemal assembly factor 5 1 1
MIRT035988 RPS5 ribosomal protein S5 1 1
MIRT035989 CCT3 chaperonin containing TCP1 subunit 3 1 1
MIRT035990 YWHAB tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein beta 1 1
MIRT035991 RPL3 ribosomal protein L3 1 1
MIRT035992 TMPO thymopoietin 1 1
MIRT035993 COPE coatomer protein complex subunit epsilon 1 1
MIRT035994 NONO non-POU domain containing octamer binding 1 1
MIRT035995 BLCAP bladder cancer associated protein 1 1
MIRT035996 NUP133 nucleoporin 133 1 1
MIRT035997 VCP valosin containing protein 1 1
MIRT035998 ARIH2 ariadne RBR E3 ubiquitin protein ligase 2 1 1
MIRT035999 SON SON DNA binding protein 1 1
MIRT036000 ATP5J ATP synthase, H+ transporting, mitochondrial Fo complex subunit F6 1 1
MIRT036001 VIM vimentin 1 1
MIRT036002 FKBP8 FK506 binding protein 8 1 1
MIRT036003 SPECC1L sperm antigen with calponin homology and coiled-coil domains 1 like 1 1
MIRT036004 ZCCHC14 zinc finger CCHC-type containing 14 1 1
MIRT036005 TXNL4A thioredoxin like 4A 1 1
MIRT036006 UBE2J2 ubiquitin conjugating enzyme E2 J2 1 1
MIRT036007 FOPNL FGFR1OP N-terminal like 1 1
MIRT036008 VDAC1 voltage dependent anion channel 1 1 1
MIRT036009 CDIP1 cell death inducing p53 target 1 1 1
MIRT036010 EBNA1BP2 EBNA1 binding protein 2 1 1
MIRT036011 CD276 CD276 molecule 1 1
MIRT036012 RPS2 ribosomal protein S2 1 1
MIRT036013 USP28 ubiquitin specific peptidase 28 1 1
MIRT036014 ZMIZ1 zinc finger MIZ-type containing 1 1 1
MIRT036015 B4GALT7 beta-1,4-galactosyltransferase 7 1 1
MIRT036016 CAND1 cullin associated and neddylation dissociated 1 1 1
MIRT036017 CCDC104 cilia and flagella associated protein 36 1 1
MIRT036018 IMPDH1 inosine monophosphate dehydrogenase 1 1 1
MIRT036019 ATXN2L ataxin 2 like 1 1
MIRT036020 PARP1 poly(ADP-ribose) polymerase 1 1 1
MIRT036021 TNXB tenascin XB 1 1
MIRT036022 SYNGR1 synaptogyrin 1 1 1
MIRT036023 TUT1 terminal uridylyl transferase 1, U6 snRNA-specific 1 1
MIRT036024 ATXN7L3B ataxin 7 like 3B 1 1
MIRT036025 BCL2L13 BCL2 like 13 1 1
MIRT036026 RBM42 RNA binding motif protein 42 1 1
MIRT036027 HDGF heparin binding growth factor 1 1
MIRT036028 NAT8L N-acetyltransferase 8 like 1 1
MIRT036029 DLST dihydrolipoamide S-succinyltransferase 1 1
MIRT036030 CEP104 centrosomal protein 104 1 1
MIRT036031 NCOR1 nuclear receptor corepressor 1 1 1
MIRT036032 COCH cochlin 1 1
MIRT036033 NUTF2 nuclear transport factor 2 1 1
MIRT036034 KMT2E lysine methyltransferase 2E 1 1
MIRT036035 RANGAP1 Ran GTPase activating protein 1 1 1
MIRT036036 SEPHS2 selenophosphate synthetase 2 1 1
MIRT036037 DYNC1I2 dynein cytoplasmic 1 intermediate chain 2 1 1
MIRT036038 ZCCHC24 zinc finger CCHC-type containing 24 1 1
MIRT036039 TRRAP transformation/transcription domain associated protein 1 1
MIRT036040 INPP4A inositol polyphosphate-4-phosphatase type I A 1 1
MIRT036041 CHN1 chimerin 1 1 1
MIRT036042 FECH ferrochelatase 1 1
MIRT036043 DCTD dCMP deaminase 1 1
MIRT036044 UBA1 ubiquitin like modifier activating enzyme 1 1 1
MIRT036045 PKM pyruvate kinase, muscle 1 1
MIRT036046 SSRP1 structure specific recognition protein 1 1 1
MIRT036047 CELF1 CUGBP Elav-like family member 1 1 1
MIRT036048 TSR2 TSR2, ribosome maturation factor 1 1
MIRT036049 TP53BP2 tumor protein p53 binding protein 2 1 1
MIRT036050 GSG2 histone H3 associated protein kinase 1 1
MIRT036051 WDFY1 WD repeat and FYVE domain containing 1 1 1
MIRT036052 RPA1 replication protein A1 1 1
MIRT036053 TMEM41A transmembrane protein 41A 1 1
MIRT036054 BIRC5 baculoviral IAP repeat containing 5 1 1
MIRT036055 NOP2 NOP2 nucleolar protein 1 1
MIRT036056 PEF1 penta-EF-hand domain containing 1 1 1
MIRT036057 CYB5D1 cytochrome b5 domain containing 1 1 1
MIRT036058 HIGD1A HIG1 hypoxia inducible domain family member 1A 1 1
MIRT036059 WDR61 WD repeat domain 61 1 1
MIRT036060 MINK1 misshapen like kinase 1 1 1
MIRT036061 RPL35A ribosomal protein L35a 1 1
MIRT036062 WNT3 Wnt family member 3 1 1
MIRT036063 SYNJ2 synaptojanin 2 1 1
MIRT036064 CFL1 cofilin 1 1 1
MIRT036065 ALDOA aldolase, fructose-bisphosphate A 1 1
MIRT036066 HIF1AN hypoxia inducible factor 1 alpha subunit inhibitor 1 1
MIRT064841 ZBTB18 zinc finger and BTB domain containing 18 2 4
MIRT090782 MBNL1 muscleblind like splicing regulator 1 2 2
MIRT163227 EDEM1 ER degradation enhancing alpha-mannosidase like protein 1 2 2
MIRT214143 LMNB1 lamin B1 2 2
MIRT291875 ZNF333 zinc finger protein 333 2 2
MIRT292477 ZNF507 zinc finger protein 507 2 2
MIRT306035 SKIL SKI like proto-oncogene 2 2
MIRT443004 TRIOBP TRIO and F-actin binding protein 2 2
MIRT457830 ITPRIP inositol 1,4,5-trisphosphate receptor interacting protein 2 2
MIRT460067 RFTN2 raftlin family member 2 2 2
MIRT460342 ARL14EP ADP ribosylation factor like GTPase 14 effector protein 2 2
MIRT463060 ZNF639 zinc finger protein 639 2 2
MIRT466204 TMED10 transmembrane p24 trafficking protein 10 2 2
MIRT476159 GOLGA8B golgin A8 family member B 2 2
MIRT486953 HLA-B major histocompatibility complex, class I, B 2 2
MIRT492391 SEMA6A semaphorin 6A 2 2
MIRT495050 CTRC chymotrypsin C 2 4
MIRT500010 ABCF2 ATP binding cassette subfamily F member 2 2 8
MIRT501565 PLEKHF2 pleckstrin homology and FYVE domain containing 2 2 4
MIRT502680 CSNK1G3 casein kinase 1 gamma 3 2 8
MIRT503058 CAB39 calcium binding protein 39 2 2
MIRT504615 PLK1 polo like kinase 1 2 2
MIRT505706 SESN2 sestrin 2 2 2
MIRT506197 PHF19 PHD finger protein 19 2 2
MIRT506821 KIF23 kinesin family member 23 2 6
MIRT513782 PAWR pro-apoptotic WT1 regulator 2 6
MIRT527011 MAGI2 membrane associated guanylate kinase, WW and PDZ domain containing 2 2 4
MIRT527806 KLRD1 killer cell lectin like receptor D1 2 2
MIRT537896 DYRK2 dual specificity tyrosine phosphorylation regulated kinase 2 2 4
MIRT537925 DST dystonin 2 2
MIRT540049 FOXC1 forkhead box C1 2 2
MIRT543395 DROSHA drosha ribonuclease III 2 2
MIRT545447 SC5D sterol-C5-desaturase 2 4
MIRT546876 RAB10 RAB10, member RAS oncogene family 2 4
MIRT549419 ACVR2B activin A receptor type 2B 2 2
MIRT551857 ASB6 ankyrin repeat and SOCS box containing 6 2 2
MIRT552453 ZNF410 zinc finger protein 410 2 2
MIRT552772 YIPF6 Yip1 domain family member 6 2 4
MIRT552788 YAF2 YY1 associated factor 2 2 2
MIRT554247 SLAIN2 SLAIN motif family member 2 2 2
MIRT554773 RHEBP1 RHEB pseudogene 1 2 4
MIRT555862 PAIP1 poly(A) binding protein interacting protein 1 2 2
MIRT556475 LIPA lipase A, lysosomal acid type 2 2
MIRT556655 KMT2D lysine methyltransferase 2D 2 4
MIRT558210 EFCAB14 EF-hand calcium binding domain 14 2 4
MIRT558306 DUSP14 dual specificity phosphatase 14 2 2
MIRT558818 CDCA4 cell division cycle associated 4 2 4
MIRT559370 ATP13A3 ATPase 13A3 2 2
MIRT559541 ARGLU1 arginine and glutamate rich 1 2 4
MIRT563022 ZNF680 zinc finger protein 680 2 2
MIRT563036 NBPF12 NBPF member 12 2 2
MIRT563791 SLC28A1 solute carrier family 28 member 1 2 2
MIRT565903 SCAMP2 secretory carrier membrane protein 2 2 2
MIRT566957 LBR lamin B receptor 2 2
MIRT567971 CPEB3 cytoplasmic polyadenylation element binding protein 3 2 2
MIRT570389 TSC22D2 TSC22 domain family member 2 2 2
MIRT575250 Timp3 tissue inhibitor of metalloproteinase 3 2 2
MIRT611519 ZNF25 zinc finger protein 25 2 2
MIRT611592 POTED POTE ankyrin domain family member D 2 2
MIRT614228 NPTXR neuronal pentraxin receptor 2 2
MIRT625933 SCYL3 SCY1 like pseudokinase 3 2 2
MIRT627320 TULP4 tubby like protein 4 2 2
MIRT631516 CTBS chitobiase 2 2
MIRT640705 MRS2 MRS2, magnesium transporter 2 2
MIRT642208 RUVBL2 RuvB like AAA ATPase 2 2 2
MIRT642767 FAM9C family with sequence similarity 9 member C 2 2
MIRT648411 KIAA0146 scaffolding protein involved in DNA repair 1 1
MIRT658045 FUT11 fucosyltransferase 11 2 2
MIRT663720 GLUL glutamate-ammonia ligase 2 2
MIRT698536 TFRC transferrin receptor 2 2
MIRT699988 RPS24 ribosomal protein S24 2 2
MIRT700433 PURB purine rich element binding protein B 2 2
MIRT705890 ADCY9 adenylate cyclase 9 2 2
MIRT706974 XPO5 exportin 5 2 2
MIRT710564 KIAA1958 KIAA1958 2 2
MIRT714070 RUNDC3B RUN domain containing 3B 2 2
MIRT716931 FAM13A family with sequence similarity 13 member A 2 2
MIRT717341 RAB40A RAB40A, member RAS oncogene family 2 2
MIRT717738 MYLK myosin light chain kinase 5 2
MIRT722963 SLC25A26 solute carrier family 25 member 26 2 2
MIRT723470 WIPF2 WAS/WASL interacting protein family member 2 2 2
MIRT732447 STAT3 signal transducer and activator of transcription 3 2 0
MIRT733631 SIRT1 sirtuin 1 3 0
MIRT733632 CCND1 cyclin D1 3 0
MIRT736012 RHEB Ras homolog, mTORC1 binding 3 0
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-mir-1301 Cisplatin 5460033 NSC119875 approved resistant High Gastric Cancer cell line (SGC-7901)
hsa-mir-1301 Cisplatin 5460033 NSC119875 approved resistant High Gastric Cancer cell line (BGC823)
hsa-mir-1301 Dabrafenib 44462760 NSC764134 approved resistant cell line (A375)
hsa-mir-1301 Paclitaxel 36314 NSC125973 approved sensitive cell line (W1)
hsa-mir-1301 Topotecan 60699 NSC609699 approved sensitive cell line (W1)
hsa-mir-1301 Androstenedione 6128 NSC9563 sensitive cell line (MCF-7)
hsa-mir-1301 Androstenedione+Letrozole sensitive cell line (MCF-7)
hsa-mir-1301 Cisplatin 5460033 NSC119875 approved sensitive cell line (BxPC3)
hsa-mir-1301 Cisplatin 5460033 NSC119875 approved resistant cell line (SGC-7901)
hsa-mir-1301 Cisplatin 5460033 NSC119875 approved resistant cell line (BGC-823)
hsa-miR-1301-3p Oxaliplatin 6857599 NSC266046 approved sensitive High Colorectal Cancer cell line (RKO)
hsa-miR-1301-3p Gemcitabine 60750 NSC613327 approved resistant High Pancreatic Cancer cell line (SW1990)
hsa-miR-1301-3p Gemcitabine 60750 NSC613327 approved sensitive High Pancreatic Cancer cell line (SW1990)
hsa-miR-1301-3p Plx-4720 24180719 NSC757438 sensitive High Thyroid Cancer cell line (8505c, BCPAP)
hsa-miR-1301-3p Imatinib 5291 NSC743414 approved sensitive Low Chronic Myelogenous Leukemia cell line (K562)
hsa-miR-1301-3p Cisplatin 5460033 NSC119875 approved sensitive High Pancreatic Cancer cell line (BxPC-3)
hsa-miR-1301-3p Dabrafenib 44462760 NSC764134 approved sensitive High Melanoma cell line (A375, IGR37, 501Mel)
hsa-miR-1301-3p Vemurafenib 42611257 NSC761431 approved sensitive High Melanoma cell line (A375, IGR37, 501Mel)
hsa-miR-1301-3p Cisplatin 5460033 NSC119875 approved resistant High Gastric Cancer tissue
hsa-miR-1301-3p Fluorouracil 3385 NSC19893 approved resistant High Gastric Cancer tissue
hsa-miR-1301-3p Trametinib 11707110 NSC758246 approved sensitive High Melanoma cell line (M14) (2uM)
hsa-miR-1301-3p Vemurafenib 42611257 NSC761431 approved sensitive High Melanoma cell line (M14) (50nM)
hsa-miR-1301-3p Vemurafenib 42611257 NSC761431 approved sensitive High Melanoma cell line (M14) (2uM)
hsa-miR-1301-3p Trametinib 11707110 NSC758246 approved sensitive High Melanoma cell line (M14) (50nM)
hsa-miR-1301-3p Epirubicin 41867 NSC256942 approved sensitive Low Osteosarcoma cell line (U-2-OS, SAOS-2)
hsa-miR-1301-3p Gemcitabine 60750 NSC613327 approved resistant High Pancreatic Cancer cell line (AsPC-1)
hsa-miR-1301-3p Cisplatin 5460033 NSC119875 approved resistant High Gastric Cancer cell line (SGC-7901, BGC-823)
hsa-miR-1301-3p Cisplatin 5460033 NSC119875 approved resistant High Ovarian Cancer cell line (A2780CP20)
hsa-miR-1301-3p Cisplatin 5460033 NSC119875 approved resistant High Non-Small Cell Lung Cancer cell line (A549)
hsa-miR-1301-3p Oxaliplatin 6857599 NSC266046 approved sensitive High Colorectal Cancer cell line (SW480, HCT-116)
hsa-miR-1301-3p Cisplatin 5460033 NSC119875 approved sensitive High Epithelial Ovarian Cancer cell line (SKOV3)
hsa-miR-1301-3p Gefitinib 123631 NSC715055 approved resistant cell line (HCC827)
hsa-miR-1301-3p Osimertinib 71496458 NSC779217 approved sensitive cell line (HCC827)
hsa-miR-1301-3p Vemurafenib 42611257 NSC761431 approved resistant cell line (451Lu)
hsa-miR-1301-3p Palbociclib 5330286 NSC758247 approved resistant tissue (breast cancer)
hsa-miR-1301-3p Cisplatin 5460033 NSC119875 approved sensitive cell line
hsa-miR-1301-3p Doxorubicin 31703 NSC123127 approved sensitive cell line (HS578T)
hsa-miR-1301-3p Cisplatin 5460033 NSC119875 approved resistant cell line (A549)
hsa-miR-1301-3p Tamoxifen+Fulvestrant resistant cell line (LCC9)
hsa-miR-1301-3p Cisplatin 5460033 NSC119875 approved resistant cell line (CP20)
hsa-miR-1301-3p Cisplatin 5460033 NSC119875 approved resistant cell line (CIS)
hsa-miR-1301-3p 4-Hydroxytamoxifen+Tamoxifen sensitive cell line (LY2)
hsa-miR-1301-3p Ethanol+Tamoxifen sensitive cell line (LY2)
hsa-miR-1301-3p Cisplatin 5460033 NSC119875 approved resistant cell line (RPMI2650)
hsa-miR-1301-3p Cisplatin 5460033 NSC119875 approved sensitive cell line (A549)

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