miRTarBase - #MIRT035969


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pre-miRNA Information
pre-miRNA hsa-mir-1301   
Genomic Coordinates chr2: 25328640 - 25328721
Synonyms MIRN1301, hsa-mir-1301, MIR1301
Description Homo sapiens miR-1301 stem-loop
Comment None
RNA Secondary Structure
Associated Diseases

Mature miRNA Information
Mature miRNA hsa-miR-1301-3p
Sequence 48| UUGCAGCUGCCUGGGAGUGACUUC |71
Evidence Experimental
Experiments Illumina
Editing Events in miRNAs
Modification Type Position on miR Chromosome DNA Strand Genomic Position (hg38) List of PMIDs Variant details
A-to-I 5 2 - 25328670 26449202, 27298257, 28411194, 28550310, 28855684, 29267965, 29950133, 29165639, 29233923 MiREDiBase
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs775188648 6 dbSNP
rs1022364375 11 dbSNP
rs938368115 12 dbSNP
rs771728471 15 dbSNP
rs778709428 19 dbSNP
rs1358947891 20 dbSNP
Putative Targets

miRNA Expression profile
Human miRNA Tissue Atlas
miRNAs in Extracellular Vesicles
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol GLI3   
Synonyms ACLS, GCPS, GLI3-190, GLI3FL, PAP-A, PAPA, PAPA1, PAPB, PHS, PPDIV
Description GLI family zinc finger 3
Transcript NM_000168   
Expression
Putative miRNA Targets on GLI3
3'UTR of GLI3
(miRNA target sites are highlighted)		 
>GLI3|NM_000168|3'UTR
   1 GCTTTAGGAAAAAAAGACTGCAACCAACGGAAATCAATAGGAGTTGAAGAGATTAAACTGACTTTGTTTTGGCTGTTTTT
  81 TTAGTTCTGTATGTATTTTAGCAATCTCATCTCACCTAACTGAGATGTGTTTCAATTATATTCCTTTTATGGAAAAGGAC
 161 TCTGAAAAACCCTAAAGTATTCTAGGGAGAAACTGTCTTCCATTTCAGTTTTGAATCAGTATTGTTACACTCAAACCACC
 241 CTCTTTTTAAAAAAAAAAAAAAAAACTGTAAGCCCCGCCCCCTTTTTAGTAAACCGATGTAAATTTGTGATGTGCATATT
 321 CTTCTTTCTTTTAGAAGAGCAGTCAAATTAAAGGATTTGACATGTTTTGCTGTTGCTCAAAGGAAATAGGAGTTGGTGTG
 401 CTTGTGACCAAGGGGTTACACTTCCAGCTTTTAAAATTCTCCTTTACATGTGCTCAGTGTTTTGTTTTGTGTTTTGGTTT
 481 CTGTTTTTTATTTTAATTCCCACATTGGGCACAAGAATCAGAATATGGATAGCTAGTTTAAGAAACTTTTGTGGGTGCAC
 561 TGTAGCATAGATGACAGAATATTGATGTTCCCCCCATCTCCAATTCAGTTCAGGGCATTCCACAGTTAAACAGAAATGGG
 641 AACGTGGGGCTCTTATAAATGAAATGGGCGCTCACAGTTTTGGTTTTCAGCTCTTCATGTCTGTAAGTGTGCTTTGGGGG
 721 AGGCTATGTCTGTATGGTCGATTCTCAGTTATCACATTTGCCTCTCCTCCCACTACCTTCATGAACATTCAGTGCTGTTT
 801 CGCACTGCAGTTAGAGAGAAGGGACGGACAGTTGGTGACACTCAGCCACATTGCTACTTTTATCTGTTCTGGTAAGAAGT
 881 TAGATAGATGGTAGATTGAAGCAATTGGGTAGAATTAGTTGGGGGAATATTTATGAGTTGCTGTGTTTGTTGATTAGTTC
 961 CATCTCTTTCCCATTTTAACTGAGAATTGATTATATATAGCTCTAAGTATATAGGTATTTAAACAACCCCACAAGCGGCT
1041 GTATCAGTAACATTTATTAATTCCACTATAGTGAGGGAGGATTTCCATTCTAAATACCTTATTTTGAGGGATTTATAAAA
1121 CTTAGTTGTAAAAGAGAAAGCCCACATAGTGGGAATAAATTGCTTCAGCCATTTTTAGTATTTGAGAGCACTAGGGAAGA
1201 TGTTTAGTAGCTGTGTGGATGCCTTTTTTCACACCCTGTCTATTGAATGCTGCATCCATTCACGAAGTTAAATGTTACAT
1281 GCAGTTAGTCCTTAATGTGGACTGGATCTGTACTTTTGTTTTGGATTAAAACATTTAAAGATTTTTGAAGTGCAGCTACT
1361 CCCCACGTGCATTTGATACACATAAAAGTCATACTGTGTGTGCACAAAGAGTACATGGATTTTCCAGCATATTGCTTTAA
1441 AAAATTATATAAACTGTTAAAATATTAACACCTCAGGCTACCTGCTGTATTCTGTCCCATTGACCCCTGGAATTGGATTT
1521 ACTGCAAGTGATTGATAATTCAATTATGTGGCTTTTCCCCTTTAATCTTGCCATTTAAATTACAGTAGAAAGACAAAATC
1601 AAGTAAAATAAAGTGTTAGATAATAGAAAGAGTGTTAAGACCAGCCCACTTTTCTCATGTTTATGTTCTTTCATTTGGAC
1681 CAAGAATCTCCGCATGGAGGTTGATTTGCCACTGGGGACTTTGGCTAAGACTATTAGGTTTGCTTTCAACTAGATGTTCC
1761 TGAGACAAGCAGAGGGACACTGCAATTCCCCTTCCATGCCTGCTGTTCTCCCCCATGTAAGTCTTCTTTGAAATTAACGG
1841 ATGTGTCTCCTTTGGAACAGCCCCATAACAAAAGAGAACTACTGATCTGAGCATAGGAAAGTAGAGGCTCTACCACTTTT
1921 CAGTTGAAAAAGCAAGACTTTCTCTGTGTTTCTGAAACAAGGCATAATGTTGTCACAGAATCAGAGATCCAGTCTCACTT
2001 TTCCACAAATCTCCAAATCTCCAGTCTTATCTTGTGTGCTCTAATGGTTTGGTTCAATCCCTTTCCAACTCTTGTTTTCA
2081 AAGCATGGGGCCTGAGTGTTCTCCACTCCTCCTAAGAAAGGAGCTTGGGTGGAAGGGACCATGCTGACCTCCTCCATCAG
2161 AGGGCTCTTCCAGTAGTATTCTCGGATGCAACCTCCATTTCTCAGTTACCATTATTTCCTGTATCAGCTTTGTCCTTCCT
2241 GGAGGGATGCACAGTGATCCGGCCCACCACTGTTGTTGTCTTGTGCTTCTGCTCTTTCCTATGGTTTCAGGTTATTTTCT
2321 GGGTTTCCCCTATTCTTCTTTTATTTCTTTTTTTTTTTATATTTGCTTTCCTTTCTACTGCTTTTAGATTTGCAGGAGAT
2401 GCAAGTTTCAGCTCAATGTTTGGCTTCTCTCAATATGGAAATTTCAGAAGGACAGAGGAGAGGAGGGAGGAAGAAGAAAG
2481 TATACTCCTCCAGAATTTCAGTGATCTGTTGTGGCAGTCCAGTGGAAGGAAGGTCTTTTGAGGTCACTTAGAAGCATCTT
2561 TTTGGGACATCCTTTTGGGATCTCTGTAGGCTAGGCATCTCATATCTTGAGACTCACCCCCAGCCTCCAAGCCTCTCTCC
2641 ATTTCTCTAACCTATGCATTTTAGAGCGAGAGGACCGCCTCACTAGTGTCACCATCCTGCCTTTTCTAAAACATGCAGGC
2721 TCACACATTCTACTCCTGCTTAATGTCTGTGTTAAACGTTTTCTAACCATTTTTGTTTTATTTTTCTGAAAAAGTTAACC
2801 CCTCCCAACTCCTCACACATTGGCTCTTCCTCTTGAGCCACAAAGTTTTGATTCTTGCGATGTATGTGCCTTATTTTATG
2881 TTAATCTTGTCAATGAGAGGGACCAGTTGGTGTTGCCCAATCAGCACTCCAAGGCTGTGTGTGCACCAGCCAGAGAGCGC
2961 ACGGTGGTAGCAGAGTCGAGGCTGTCTTGTATCCTGGTTTCATGTGTTGTTTTGAACTGATAGGAGGATGTTCTCTTCTG
3041 ACAAGTTACCCTTGTGTATCCTGCAGACATGTAAAATAAAATACAAGTTCATTTTTTTCACCTTTTTTAGATTTTTTTAA
3121 AAAATAAAATGTGTAATCCTTTTTTTAAAAGAAACACATGTAAATACATTTAAGTATTGTAGGCATAGCGTTCAGATGTG
3201 ACTGGCCCAGGCGTTCCTCGGACAAGCCTGCATTCCCCGTGATCACGCCCACCTCAAGCCCAGGGGCTGCAGCCCAGCCA
3281 CAGATGAACTCTACCTTTGCTTTCAGAACCACTTAGTCCTTTTGTAACAAAGAAAAAAAAATGTTTCTTACAATGTCAAT
3361 AAAAAATTCTTTGTATGGAAAAAAAAAAAAAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1 
miRNA  3' cuucAGUGAGGGUCCGUCGACGUu 5'
              |||  |||||| :|||||| 
Target 5' caccTCAAGCCCAGG-GGCTGCAg 3'
 3250 - 3272 155.00 -25.80
2 
miRNA  3' cuucagUGAGG-GUCCGUCGACGUu 5'
                || || || ||:||||:| 
Target 5' taaacaACCCCACAAGCGGCTGTAt 3'
 1020 - 1044 134.00 -19.20
3 
miRNA  3' cuUCAGUGAGG-GUCCG-UC-GACGUu 5'
            || |::||| |:| | || ||||| 
Target 5' ccAGGCGTTCCTCGGACAAGCCTGCAt 3'
 3207 - 3233 134.00 -18.70
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
255411 11 ClinVar
255412 16 ClinVar
908860 28 ClinVar
255413 30 ClinVar
360219 66 ClinVar
910584 73 ClinVar
360218 136 ClinVar
360217 165 ClinVar
360216 185 ClinVar
909650 248 ClinVar
360213 249 ClinVar
360214 249 ClinVar
360215 249 ClinVar
360212 265 ClinVar
360211 266 ClinVar
360210 267 ClinVar
908802 311 ClinVar
908801 332 ClinVar
908800 333 ClinVar
908799 386 ClinVar
360209 428 ClinVar
360208 512 ClinVar
360207 589 ClinVar
910522 603 ClinVar
360206 655 ClinVar
360205 726 ClinVar
360204 741 ClinVar
360203 835 ClinVar
360202 847 ClinVar
908742 889 ClinVar
360201 911 ClinVar
360200 943 ClinVar
360199 974 ClinVar
360198 1007 ClinVar
360197 1027 ClinVar
360196 1043 ClinVar
360195 1080 ClinVar
360194 1087 ClinVar
360193 1239 ClinVar
360192 1263 ClinVar
360191 1296 ClinVar
360190 1297 ClinVar
908683 1332 ClinVar
360189 1366 ClinVar
360188 1386 ClinVar
908682 1399 ClinVar
360187 1411 ClinVar
360186 1464 ClinVar
911630 1470 ClinVar
360185 1471 ClinVar
910409 1553 ClinVar
360184 1623 ClinVar
360183 1688 ClinVar
360182 1691 ClinVar
360181 1780 ClinVar
360180 1858 ClinVar
360179 2019 ClinVar
908613 2050 ClinVar
360178 2071 ClinVar
908612 2089 ClinVar
360177 2117 ClinVar
360176 2151 ClinVar
911564 2176 ClinVar
360175 2216 ClinVar
360174 2257 ClinVar
360173 2276 ClinVar
360172 2347 ClinVar
360171 2357 ClinVar
360170 2359 ClinVar
360169 2419 ClinVar
360168 2465 ClinVar
360167 2508 ClinVar
909401 2517 ClinVar
908536 2612 ClinVar
360166 2620 ClinVar
360165 2666 ClinVar
360164 2676 ClinVar
360163 2715 ClinVar
911505 2744 ClinVar
360162 2757 ClinVar
910291 2861 ClinVar
910290 3002 ClinVar
360161 3004 ClinVar
360160 3094 ClinVar
360159 3238 ClinVar
360158 3262 ClinVar
360157 3309 ClinVar
360156 3342 ClinVar
360155 3369 ClinVar
COSN30492382 1 COSMIC
COSN31574608 8 COSMIC
COSN26977481 9 COSMIC
COSN28886911 9 COSMIC
COSN30501910 20 COSMIC
COSN30515064 25 COSMIC
COSN24479487 37 COSMIC
COSN30109481 42 COSMIC
COSN30121609 51 COSMIC
COSN31514916 75 COSMIC
COSN30581403 76 COSMIC
COSN28830246 77 COSMIC
COSN30490020 80 COSMIC
COSN24395775 108 COSMIC
COSN28196095 149 COSMIC
COSN30160683 153 COSMIC
COSN28731987 174 COSMIC
COSN14942981 192 COSMIC
COSN31583761 240 COSMIC
COSN26602334 248 COSMIC
COSN30166734 249 COSMIC
COSN29539352 257 COSMIC
COSN26573261 281 COSMIC
COSN26465062 294 COSMIC
COSN23127348 391 COSMIC
COSN2223182 590 COSMIC
COSN5100836 690 COSMIC
COSN32057779 726 COSMIC
COSN20091566 823 COSMIC
COSN5100835 1087 COSMIC
COSN27902976 1092 COSMIC
COSN27050653 1222 COSMIC
COSN8021860 1546 COSMIC
COSN24695821 1626 COSMIC
COSN15662817 1878 COSMIC
COSN23794057 1989 COSMIC
COSN8021858 2047 COSMIC
COSN1349585 2166 COSMIC
COSN1349584 2348 COSMIC
COSN19544580 2403 COSMIC
COSN28293578 2520 COSMIC
COSN16860636 2618 COSMIC
COSN28794611 2676 COSMIC
COSN17525032 2731 COSMIC
COSN8021857 2745 COSMIC
COSN27101008 2793 COSMIC
COSN28201536 2806 COSMIC
COSN31486444 2841 COSMIC
COSN17649231 2846 COSMIC
COSN8021856 2975 COSMIC
COSN8301872 3022 COSMIC
COSN31533517 3061 COSMIC
COSN9989192 3101 COSMIC
COSN31596652 3111 COSMIC
COSN31536041 3131 COSMIC
COSN16053420 3132 COSMIC
COSN21549017 3134 COSMIC
COSN31518600 3139 COSMIC
COSN31516223 3151 COSMIC
COSN31547059 3195 COSMIC
COSN8021855 3227 COSMIC
COSN25906863 3231 COSMIC
COSN31531404 3243 COSMIC
COSN17775622 3255 COSMIC
COSN31547879 3319 COSMIC
COSN8801274 3327 COSMIC
COSN26552053 3328 COSMIC
COSN20104163 3332 COSMIC
COSN31523998 3365 COSMIC
rs2051935 428 GWAS
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs753279069 1 dbSNP
rs1345681780 8 dbSNP
rs187024593 9 dbSNP
rs139896177 11 dbSNP
rs886038264 16 dbSNP
rs1379413319 17 dbSNP
rs555183743 19 dbSNP
rs772787016 20 dbSNP
rs767226834 25 dbSNP
rs761585918 28 dbSNP
rs199988252 29 dbSNP
rs77886553 30 dbSNP
rs749136683 33 dbSNP
rs775517033 35 dbSNP
rs1353621406 37 dbSNP
rs572555717 39 dbSNP
rs753983018 42 dbSNP
rs1248695416 43 dbSNP
rs766892607 44 dbSNP
rs951451942 55 dbSNP
rs1025770632 65 dbSNP
rs886062334 66 dbSNP
rs1466541082 81 dbSNP
rs1192477584 83 dbSNP
rs554405441 84 dbSNP
rs538967404 88 dbSNP
rs1163109874 91 dbSNP
rs951041372 95 dbSNP
rs1381299474 101 dbSNP
rs898692402 107 dbSNP
rs1421975395 112 dbSNP
rs1018497834 115 dbSNP
rs771611053 120 dbSNP
rs1183781240 122 dbSNP
rs1295390263 129 dbSNP
rs1003433412 134 dbSNP
rs1456618552 134 dbSNP
rs78794712 136 dbSNP
rs1309966883 139 dbSNP
rs1378834337 141 dbSNP
rs1243554766 148 dbSNP
rs886062333 165 dbSNP
rs1321972670 172 dbSNP
rs1223079827 173 dbSNP
rs1023450854 174 dbSNP
rs1051209622 176 dbSNP
rs550978084 180 dbSNP
rs549923872 183 dbSNP
rs531678760 185 dbSNP
rs532726767 206 dbSNP
rs1219070951 209 dbSNP
rs1180497745 212 dbSNP
rs1320847166 219 dbSNP
rs999278320 222 dbSNP
rs1424616919 231 dbSNP
rs1166926955 232 dbSNP
rs182735918 233 dbSNP
rs1398190436 235 dbSNP
rs548766442 237 dbSNP
rs987005043 238 dbSNP
rs1374208185 239 dbSNP
rs1450126821 241 dbSNP
rs1283416330 247 dbSNP
rs61091998 248 dbSNP
rs1491346758 249 dbSNP
rs6972450 249 dbSNP
rs886062331 249 dbSNP
rs886062332 249 dbSNP
rs1051519802 250 dbSNP
rs796433186 250 dbSNP
rs921512238 257 dbSNP
rs934253568 257 dbSNP
rs1399233630 258 dbSNP
rs1183815640 259 dbSNP
rs1483818536 259 dbSNP
rs1039928005 260 dbSNP
rs1477526070 260 dbSNP
rs909636458 261 dbSNP
rs941476453 261 dbSNP
rs1457872867 262 dbSNP
rs1043479068 263 dbSNP
rs1359519696 263 dbSNP
rs946540479 264 dbSNP
rs201493390 265 dbSNP
rs1218665334 266 dbSNP
rs1433213807 266 dbSNP
rs550264781 266 dbSNP
rs879056397 266 dbSNP
rs990730469 266 dbSNP
rs1491581213 267 dbSNP
rs200963676 267 dbSNP
rs951133903 267 dbSNP
rs1477119155 268 dbSNP
rs927683128 270 dbSNP
rs1425847059 274 dbSNP
rs1415911055 277 dbSNP
rs1156643379 283 dbSNP
rs1441666290 283 dbSNP
rs1265397897 285 dbSNP
rs560096233 293 dbSNP
rs939270069 296 dbSNP
rs1400239279 307 dbSNP
rs1189349323 311 dbSNP
rs928621431 314 dbSNP
rs1488125119 316 dbSNP
rs1328845111 323 dbSNP
rs1265743196 325 dbSNP
rs190531579 332 dbSNP
rs1346358771 339 dbSNP
rs1221255723 346 dbSNP
rs533095330 349 dbSNP
rs1284329586 350 dbSNP
rs543145080 351 dbSNP
rs1351036573 355 dbSNP
rs1353186675 357 dbSNP
rs1023501760 360 dbSNP
rs1288474417 363 dbSNP
rs1449914603 369 dbSNP
rs1198277831 376 dbSNP
rs1247172976 379 dbSNP
rs951401550 386 dbSNP
rs1025718566 389 dbSNP
rs1176480862 404 dbSNP
rs1379435846 411 dbSNP
rs1420146114 414 dbSNP
rs369321281 415 dbSNP
rs1404196330 420 dbSNP
rs1336978847 422 dbSNP
rs1332114979 424 dbSNP
rs2051935 428 dbSNP
rs1307790485 436 dbSNP
rs778454432 451 dbSNP
rs1018859556 467 dbSNP
rs1029702550 469 dbSNP
rs1007107311 471 dbSNP
rs998178289 472 dbSNP
rs900092166 482 dbSNP
rs1209242393 483 dbSNP
rs1039940951 488 dbSNP
rs941528832 489 dbSNP
rs1368994595 496 dbSNP
rs1237538711 502 dbSNP
rs1305323321 505 dbSNP
rs886062330 512 dbSNP
rs955805198 517 dbSNP
rs1047662602 519 dbSNP
rs1472264180 520 dbSNP
rs1029952874 527 dbSNP
rs1392244253 528 dbSNP
rs1463668591 529 dbSNP
rs999128247 543 dbSNP
rs1329878066 545 dbSNP
rs186012796 547 dbSNP
rs1159433743 552 dbSNP
rs749177297 562 dbSNP
rs927703508 563 dbSNP
rs1309611214 567 dbSNP
rs1375942305 568 dbSNP
rs555546978 569 dbSNP
rs1198254465 571 dbSNP
rs1432522693 577 dbSNP
rs886062329 589 dbSNP
rs1268045386 590 dbSNP
rs543233055 591 dbSNP
rs981836302 592 dbSNP
rs1487210407 596 dbSNP
rs778107482 596 dbSNP
rs1458186144 600 dbSNP
rs182121145 603 dbSNP
rs754906162 613 dbSNP
rs1216828425 625 dbSNP
rs1352395294 636 dbSNP
rs1043428838 638 dbSNP
rs1441690576 643 dbSNP
rs1187813212 644 dbSNP
rs1369887151 648 dbSNP
rs1476526310 652 dbSNP
rs77197280 655 dbSNP
rs1423449274 656 dbSNP
rs1466610722 667 dbSNP
rs146133227 669 dbSNP
rs755844016 670 dbSNP
rs1400508286 672 dbSNP
rs1285794911 677 dbSNP
rs939234731 687 dbSNP
rs927870493 688 dbSNP
rs1047703300 690 dbSNP
rs1340240812 691 dbSNP
rs1299204256 699 dbSNP
rs1384072528 713 dbSNP
rs1318438532 714 dbSNP
rs1229502932 716 dbSNP
rs1030855505 717 dbSNP
rs978326129 724 dbSNP
rs118157739 726 dbSNP
rs918608184 734 dbSNP
rs1030125479 738 dbSNP
rs998189973 740 dbSNP
rs114615136 741 dbSNP
rs1178455602 749 dbSNP
rs963126134 751 dbSNP
rs1476815133 752 dbSNP
rs1422587682 754 dbSNP
rs1018551095 757 dbSNP
rs1465815400 767 dbSNP
rs1194196437 770 dbSNP
rs1173563543 771 dbSNP
rs1005836181 775 dbSNP
rs372892775 781 dbSNP
rs1398402960 785 dbSNP
rs537899261 786 dbSNP
rs1297883161 787 dbSNP
rs1047268774 792 dbSNP
rs1384036770 795 dbSNP
rs986028467 802 dbSNP
rs1330480659 804 dbSNP
rs1282216088 805 dbSNP
rs567415011 808 dbSNP
rs758517726 810 dbSNP
rs1448353316 820 dbSNP
rs1286331647 821 dbSNP
rs1253697140 825 dbSNP
rs1199356707 826 dbSNP
rs1483266188 834 dbSNP
rs73688609 835 dbSNP
rs1433122155 843 dbSNP
rs999745844 845 dbSNP
rs116986447 847 dbSNP
rs1317847371 850 dbSNP
rs1397255673 851 dbSNP
rs1418329892 853 dbSNP
rs1158242061 856 dbSNP
rs1361471195 861 dbSNP
rs1455374248 866 dbSNP
rs1291862010 870 dbSNP
rs1279229912 871 dbSNP
rs947735354 875 dbSNP
rs1387265125 880 dbSNP
rs1305615881 881 dbSNP
rs191936402 885 dbSNP
rs936641071 887 dbSNP
rs1318388633 889 dbSNP
rs760553153 890 dbSNP
rs1218659927 894 dbSNP
rs1264368765 897 dbSNP
rs1010579308 899 dbSNP
rs144480749 901 dbSNP
rs1438200837 902 dbSNP
rs1178441867 907 dbSNP
rs187664615 911 dbSNP
rs1421120842 916 dbSNP
rs1003770857 920 dbSNP
rs372166793 925 dbSNP
rs1458508104 926 dbSNP
rs922729775 928 dbSNP
rs1398051060 933 dbSNP
rs976805361 936 dbSNP
rs139782938 943 dbSNP
rs760153793 962 dbSNP
rs1047653107 964 dbSNP
rs1329415514 966 dbSNP
rs1463992710 971 dbSNP
rs886062328 974 dbSNP
rs1168256717 984 dbSNP
rs1026284077 987 dbSNP
rs1275545876 989 dbSNP
rs1476292289 990 dbSNP
rs918555987 991 dbSNP
rs1366529702 1000 dbSNP
rs1038370508 1001 dbSNP
rs886062327 1007 dbSNP
rs1186338514 1012 dbSNP
rs1444878223 1015 dbSNP
rs886062326 1027 dbSNP
rs1180303285 1032 dbSNP
rs757553150 1035 dbSNP
rs766863557 1036 dbSNP
rs368476496 1037 dbSNP
rs1421311603 1041 dbSNP
rs200076691 1043 dbSNP
rs1171125560 1047 dbSNP
rs1356058866 1056 dbSNP
rs1445600126 1063 dbSNP
rs1046535318 1064 dbSNP
rs1011972693 1067 dbSNP
rs58924064 1080 dbSNP
rs922791761 1085 dbSNP
rs76023240 1087 dbSNP
rs1316819035 1089 dbSNP
rs966942431 1095 dbSNP
rs1022538205 1097 dbSNP
rs1309608543 1110 dbSNP
rs879008730 1117 dbSNP
rs923882724 1125 dbSNP
rs1197894664 1133 dbSNP
rs1042674945 1135 dbSNP
rs1190087827 1141 dbSNP
rs1354642455 1142 dbSNP
rs989106218 1146 dbSNP
rs1284001221 1153 dbSNP
rs1261108123 1159 dbSNP
rs1245725313 1171 dbSNP
rs1477575233 1174 dbSNP
rs1385274748 1178 dbSNP
rs1307155409 1180 dbSNP
rs1421632036 1184 dbSNP
rs1412497021 1194 dbSNP
rs1175133076 1220 dbSNP
rs1375612534 1230 dbSNP
rs886062325 1239 dbSNP
rs1436178620 1242 dbSNP
rs1296029440 1245 dbSNP
rs773447855 1247 dbSNP
rs561670729 1256 dbSNP
rs959095645 1259 dbSNP
rs886062324 1263 dbSNP
rs1446191614 1264 dbSNP
rs540303330 1266 dbSNP
rs572990622 1271 dbSNP
rs1364735129 1276 dbSNP
rs1399413167 1281 dbSNP
rs1278379366 1282 dbSNP
rs1003310601 1288 dbSNP
rs77126593 1296 dbSNP
rs116029585 1297 dbSNP
rs386712517 1298 dbSNP
rs868248188 1302 dbSNP
rs578196460 1304 dbSNP
rs1487993588 1306 dbSNP
rs911304049 1308 dbSNP
rs1424898917 1309 dbSNP
rs1243739476 1311 dbSNP
rs1190601005 1312 dbSNP
rs899078223 1313 dbSNP
rs1176212904 1318 dbSNP
rs1156434783 1324 dbSNP
rs1037644692 1325 dbSNP
rs941344763 1327 dbSNP
rs761351887 1332 dbSNP
rs1319719439 1337 dbSNP
rs1050249412 1352 dbSNP
rs1025906888 1355 dbSNP
rs146291268 1360 dbSNP
rs1237028449 1363 dbSNP
rs759370981 1365 dbSNP
rs994853836 1365 dbSNP
rs886062323 1366 dbSNP
rs1232987965 1367 dbSNP
rs538160791 1377 dbSNP
rs573648950 1380 dbSNP
rs1012360682 1383 dbSNP
rs886062322 1386 dbSNP
rs1470315098 1396 dbSNP
rs1160002644 1399 dbSNP
rs894906026 1404 dbSNP
rs180680220 1408 dbSNP
rs533889729 1409 dbSNP
rs148318176 1411 dbSNP
rs1000554702 1412 dbSNP
rs1329738893 1419 dbSNP
rs1335341591 1423 dbSNP
rs1240017873 1432 dbSNP
rs1281362399 1437 dbSNP
rs1444210987 1443 dbSNP
rs1354305000 1446 dbSNP
rs1329338872 1448 dbSNP
rs74543338 1449 dbSNP
rs1042044092 1456 dbSNP
rs548884793 1458 dbSNP
rs566417596 1464 dbSNP
rs1156419367 1470 dbSNP
rs886062321 1471 dbSNP
rs1472152184 1484 dbSNP
rs1418739823 1485 dbSNP
rs901758826 1489 dbSNP
rs1408006475 1490 dbSNP
rs34057741 1493 dbSNP
rs776161969 1494 dbSNP
rs879049658 1500 dbSNP
rs1392381018 1504 dbSNP
rs1331075089 1505 dbSNP
rs982241404 1511 dbSNP
rs749234465 1513 dbSNP
rs1477326185 1518 dbSNP
rs1026094261 1520 dbSNP
rs1246683612 1523 dbSNP
rs1293996349 1527 dbSNP
rs780020629 1532 dbSNP
rs539301458 1542 dbSNP
rs1216719318 1546 dbSNP
rs1250730627 1548 dbSNP
rs1327567842 1557 dbSNP
rs1339803988 1563 dbSNP
rs899032443 1565 dbSNP
rs188188688 1585 dbSNP
rs1016155489 1612 dbSNP
rs1007478736 1613 dbSNP
rs1441496061 1613 dbSNP
rs889760430 1616 dbSNP
rs183853326 1623 dbSNP
rs1476576240 1628 dbSNP
rs1192095012 1631 dbSNP
rs1373028971 1631 dbSNP
rs972754174 1632 dbSNP
rs970985638 1637 dbSNP
rs1400262991 1638 dbSNP
rs1317747305 1640 dbSNP
rs934013222 1641 dbSNP
rs1217602033 1642 dbSNP
rs990950892 1645 dbSNP
rs1357415984 1648 dbSNP
rs149597882 1649 dbSNP
rs1294710215 1668 dbSNP
rs1274226249 1673 dbSNP
rs886062320 1688 dbSNP
rs181261768 1691 dbSNP
rs745715121 1692 dbSNP
rs1021079269 1698 dbSNP
rs997186467 1703 dbSNP
rs1282077654 1708 dbSNP
rs1486991866 1712 dbSNP
rs901771714 1715 dbSNP
rs1296130980 1718 dbSNP
rs373900710 1722 dbSNP
rs546654313 1729 dbSNP
rs1429642690 1732 dbSNP
rs915415418 1733 dbSNP
rs188647859 1735 dbSNP
rs557547254 1738 dbSNP
rs990118228 1744 dbSNP
rs1423891099 1754 dbSNP
rs1177719224 1756 dbSNP
rs938291800 1759 dbSNP
rs1385512745 1761 dbSNP
rs1481711949 1768 dbSNP
rs1383841800 1772 dbSNP
rs564075117 1774 dbSNP
rs886062319 1780 dbSNP
rs1369942660 1785 dbSNP
rs981783936 1791 dbSNP
rs780827432 1794 dbSNP
rs931427054 1802 dbSNP
rs545577203 1805 dbSNP
rs578034942 1813 dbSNP
rs1207379990 1824 dbSNP
rs199672367 1829 dbSNP
rs562743623 1838 dbSNP
rs918186796 1839 dbSNP
rs963167845 1843 dbSNP
rs1438085210 1844 dbSNP
rs1158731884 1845 dbSNP
rs1364455978 1848 dbSNP
rs1455453805 1853 dbSNP
rs886062318 1858 dbSNP
rs1291662069 1863 dbSNP
rs1393678356 1865 dbSNP
rs138806624 1869 dbSNP
rs574007844 1873 dbSNP
rs1441271597 1884 dbSNP
rs1016116165 1888 dbSNP
rs1007859972 1889 dbSNP
rs1374458559 1889 dbSNP
rs1032947527 1900 dbSNP
rs1307313159 1904 dbSNP
rs1213839073 1911 dbSNP
rs1242012615 1924 dbSNP
rs1271779732 1937 dbSNP
rs1334773782 1938 dbSNP
rs953307774 1938 dbSNP
rs979623023 1957 dbSNP
rs146052635 1958 dbSNP
rs371217253 1961 dbSNP
rs1251539926 1962 dbSNP
rs1334059264 1974 dbSNP
rs1420913829 1998 dbSNP
rs998192851 2003 dbSNP
rs1358007801 2009 dbSNP
rs901213659 2016 dbSNP
rs73318085 2019 dbSNP
rs1167097177 2024 dbSNP
rs1397809658 2024 dbSNP
rs1441273103 2028 dbSNP
rs1298347022 2030 dbSNP
rs1471236020 2032 dbSNP
rs1011218413 2041 dbSNP
rs573860484 2050 dbSNP
rs1292152775 2051 dbSNP
rs1413343249 2060 dbSNP
rs1429531887 2066 dbSNP
rs539931592 2071 dbSNP
rs1234437698 2072 dbSNP
rs748339181 2074 dbSNP
rs938203222 2075 dbSNP
rs1422120650 2077 dbSNP
rs1180293408 2081 dbSNP
rs779140503 2085 dbSNP
rs1007502628 2086 dbSNP
rs865942966 2089 dbSNP
rs887689076 2101 dbSNP
rs1049400317 2108 dbSNP
rs993308923 2109 dbSNP
rs1475599452 2111 dbSNP
rs1205710938 2114 dbSNP
rs185099021 2117 dbSNP
rs1409114534 2119 dbSNP
rs1170885597 2123 dbSNP
rs1355863756 2131 dbSNP
rs1037094048 2135 dbSNP
rs1311966287 2137 dbSNP
rs949400596 2141 dbSNP
rs1416146120 2143 dbSNP
rs917944297 2148 dbSNP
rs774204684 2151 dbSNP
rs1297468304 2157 dbSNP
rs550811338 2168 dbSNP
rs948999824 2170 dbSNP
rs1309699367 2172 dbSNP
rs1226205074 2174 dbSNP
rs1279940837 2175 dbSNP
rs1486012871 2176 dbSNP
rs918928937 2179 dbSNP
rs535731576 2183 dbSNP
rs938307222 2184 dbSNP
rs1187099411 2210 dbSNP
rs1421388651 2211 dbSNP
rs1452391138 2214 dbSNP
rs886062317 2216 dbSNP
rs1172606340 2218 dbSNP
rs1375709356 2227 dbSNP
rs1435964599 2232 dbSNP
rs1315625027 2242 dbSNP
rs767426495 2244 dbSNP
rs1344147275 2254 dbSNP
rs1430636515 2254 dbSNP
rs886062316 2257 dbSNP
rs1454154852 2259 dbSNP
rs376660752 2260 dbSNP
rs772863901 2261 dbSNP
rs1348876366 2262 dbSNP
rs1462970981 2264 dbSNP
rs1236515836 2269 dbSNP
rs753954086 2270 dbSNP
rs985962539 2273 dbSNP
rs1446567219 2275 dbSNP
rs568393106 2276 dbSNP
rs371502219 2280 dbSNP
rs544296197 2280 dbSNP
rs965765637 2281 dbSNP
rs546617661 2293 dbSNP
rs1455293466 2297 dbSNP
rs1156511873 2298 dbSNP
rs1185457871 2309 dbSNP
rs1406569492 2310 dbSNP
rs528117077 2315 dbSNP
rs1319501872 2324 dbSNP
rs1391511811 2326 dbSNP
rs564120180 2330 dbSNP
rs1237683879 2332 dbSNP
rs965307622 2338 dbSNP
rs1020927702 2340 dbSNP
rs1176487191 2342 dbSNP
rs376539623 2343 dbSNP
rs1286173373 2346 dbSNP
rs1332600366 2347 dbSNP
rs138209843 2347 dbSNP
rs1172312037 2351 dbSNP
rs562705224 2357 dbSNP
rs1358247497 2358 dbSNP
rs1414758689 2359 dbSNP
rs144064690 2359 dbSNP
rs1470162479 2359 dbSNP
rs1460327705 2360 dbSNP
rs1292114382 2361 dbSNP
rs544434923 2362 dbSNP
rs1045960797 2364 dbSNP
rs529520994 2375 dbSNP
rs1054320289 2378 dbSNP
rs1407488489 2390 dbSNP
rs1327047599 2392 dbSNP
rs1335434706 2393 dbSNP
rs1442942223 2402 dbSNP
rs1305678839 2411 dbSNP
rs1002368797 2416 dbSNP
rs886062315 2419 dbSNP
rs1376234263 2427 dbSNP
rs1232568652 2434 dbSNP
rs1273788627 2440 dbSNP
rs771611130 2443 dbSNP
rs1336611657 2445 dbSNP
rs905367105 2450 dbSNP
rs562090095 2452 dbSNP
rs1271771468 2455 dbSNP
rs1046605922 2457 dbSNP
rs896572680 2461 dbSNP
rs886062314 2465 dbSNP
rs1055083858 2470 dbSNP
rs756551750 2471 dbSNP
rs1419242070 2477 dbSNP
rs918896410 2479 dbSNP
rs1459736316 2480 dbSNP
rs1036016221 2490 dbSNP
rs925531030 2492 dbSNP
rs941698901 2493 dbSNP
rs1292139467 2505 dbSNP
rs886062313 2508 dbSNP
rs908958639 2512 dbSNP
rs986316715 2513 dbSNP
rs568690074 2517 dbSNP
rs945551638 2520 dbSNP
rs1293788806 2531 dbSNP
rs1475445971 2532 dbSNP
rs914105263 2534 dbSNP
rs1339911649 2538 dbSNP
rs1206820034 2542 dbSNP
rs1277811538 2544 dbSNP
rs976244412 2547 dbSNP
rs540611408 2548 dbSNP
rs1211023887 2551 dbSNP
rs1159999787 2554 dbSNP
rs573114465 2555 dbSNP
rs975945871 2557 dbSNP
rs1191747043 2562 dbSNP
rs1252631180 2564 dbSNP
rs1372832374 2564 dbSNP
rs1170663618 2565 dbSNP
rs1189226099 2567 dbSNP
rs1490111093 2569 dbSNP
rs1393533619 2581 dbSNP
rs967256182 2585 dbSNP
rs1269371096 2586 dbSNP
rs1434106801 2588 dbSNP
rs1020183493 2594 dbSNP
rs558135323 2595 dbSNP
rs1313574659 2597 dbSNP
rs1404513705 2601 dbSNP
rs1224169066 2604 dbSNP
rs988100047 2605 dbSNP
rs1351069430 2608 dbSNP
rs910267687 2615 dbSNP
rs1053467262 2616 dbSNP
rs1230369593 2618 dbSNP
rs56158069 2620 dbSNP
rs938597160 2628 dbSNP
rs1299873945 2639 dbSNP
rs1223477937 2653 dbSNP
rs1234639875 2655 dbSNP
rs1032394249 2656 dbSNP
rs866000596 2658 dbSNP
rs117987369 2666 dbSNP
rs773932894 2667 dbSNP
rs1465597123 2668 dbSNP
rs1190912354 2669 dbSNP
rs768206315 2673 dbSNP
rs886062312 2676 dbSNP
rs1013789928 2677 dbSNP
rs537218397 2684 dbSNP
rs898061193 2685 dbSNP
rs569422034 2689 dbSNP
rs1036653279 2691 dbSNP
rs1384610603 2691 dbSNP
rs1289493352 2692 dbSNP
rs1379416482 2696 dbSNP
rs1451786106 2700 dbSNP
rs1157881016 2701 dbSNP
rs1455457526 2704 dbSNP
rs193192167 2715 dbSNP
rs1014035525 2719 dbSNP
rs188602066 2722 dbSNP
rs1480071723 2723 dbSNP
rs375134173 2730 dbSNP
rs887446347 2732 dbSNP
rs1323666363 2733 dbSNP
rs1441140983 2734 dbSNP
rs896584027 2735 dbSNP
rs1314559826 2736 dbSNP
rs779891454 2738 dbSNP
rs1050141162 2744 dbSNP
rs185735706 2750 dbSNP
rs3823720 2757 dbSNP
rs539144419 2758 dbSNP
rs1330442335 2763 dbSNP
rs1211186398 2765 dbSNP
rs1487099857 2768 dbSNP
rs1260651126 2769 dbSNP
rs1205177817 2775 dbSNP
rs1468351493 2786 dbSNP
rs745633052 2790 dbSNP
rs1253749095 2792 dbSNP
rs568354334 2815 dbSNP
rs1324961580 2816 dbSNP
rs903826247 2820 dbSNP
rs1217229753 2824 dbSNP
rs975872311 2829 dbSNP
rs1181187386 2833 dbSNP
rs1326052594 2838 dbSNP
rs1364255853 2838 dbSNP
rs945924384 2842 dbSNP
rs1044106569 2843 dbSNP
rs1162750123 2853 dbSNP
rs1393426835 2855 dbSNP
rs527804928 2858 dbSNP
rs553265449 2859 dbSNP
rs1390252405 2864 dbSNP
rs534924307 2865 dbSNP
rs1336175247 2875 dbSNP
rs1351870648 2877 dbSNP
rs1230744908 2883 dbSNP
rs1271884281 2889 dbSNP
rs1469215623 2890 dbSNP
rs570322212 2892 dbSNP
rs958025456 2899 dbSNP
rs552163873 2906 dbSNP
rs1267389434 2925 dbSNP
rs1479790408 2927 dbSNP
rs1195508193 2934 dbSNP
rs1032775712 2937 dbSNP
rs944815080 2954 dbSNP
rs1185644231 2957 dbSNP
rs1474329555 2958 dbSNP
rs764872524 2958 dbSNP
rs1372308077 2959 dbSNP
rs980850756 2962 dbSNP
rs530503910 2963 dbSNP
rs1298458027 2968 dbSNP
rs930375298 2970 dbSNP
rs1025086555 2972 dbSNP
rs569438500 2977 dbSNP
rs1291902023 2980 dbSNP
rs1013758721 2992 dbSNP
rs1229196171 2993 dbSNP
rs898028580 2994 dbSNP
rs1306194266 2998 dbSNP
rs1204082338 2999 dbSNP
rs1275642596 3001 dbSNP
rs1484040578 3002 dbSNP
rs1015149415 3003 dbSNP
rs3735361 3004 dbSNP
rs766323586 3008 dbSNP
rs1183569234 3023 dbSNP
rs887425332 3026 dbSNP
rs1427762763 3029 dbSNP
rs1168772614 3030 dbSNP
rs1391634307 3031 dbSNP
rs1432278085 3033 dbSNP
rs1197327552 3040 dbSNP
rs529485690 3045 dbSNP
rs1359282246 3046 dbSNP
rs1449352754 3055 dbSNP
rs191295281 3056 dbSNP
rs1339096687 3058 dbSNP
rs992623918 3062 dbSNP
rs958510707 3068 dbSNP
rs1252257334 3069 dbSNP
rs1360244064 3073 dbSNP
rs1229812849 3088 dbSNP
rs150284632 3090 dbSNP
rs1298560396 3093 dbSNP
rs886062311 3094 dbSNP
rs995882999 3096 dbSNP
rs1033740136 3099 dbSNP
rs34650342 3099 dbSNP
rs1279663663 3104 dbSNP
rs1312916932 3110 dbSNP
rs1314458132 3113 dbSNP
rs1002324437 3117 dbSNP
rs186887428 3118 dbSNP
rs1022327737 3119 dbSNP
rs1040134691 3119 dbSNP
rs1009946641 3125 dbSNP
rs1172665767 3125 dbSNP
rs945850502 3127 dbSNP
rs1408148385 3131 dbSNP
rs377391339 3132 dbSNP
rs1178791318 3133 dbSNP
rs1040623689 3136 dbSNP
rs1168344200 3137 dbSNP
rs1434765012 3139 dbSNP
rs1321618827 3143 dbSNP
rs182402357 3146 dbSNP
rs35954049 3147 dbSNP
rs889315999 3147 dbSNP
rs1303025066 3155 dbSNP
rs1051014395 3156 dbSNP
rs1282013218 3158 dbSNP
rs1316290801 3160 dbSNP
rs1209329382 3161 dbSNP
rs1269748213 3164 dbSNP
rs1467019923 3167 dbSNP
rs1216453165 3175 dbSNP
rs930449201 3177 dbSNP
rs1383044940 3179 dbSNP
rs1246934582 3185 dbSNP
rs1182422396 3190 dbSNP
rs1444662081 3195 dbSNP
rs878887217 3199 dbSNP
rs1406673357 3205 dbSNP
rs1457148636 3206 dbSNP
rs920331476 3211 dbSNP
rs575807353 3212 dbSNP
rs557532656 3213 dbSNP
rs1323064880 3214 dbSNP
rs1437772899 3216 dbSNP
rs981161683 3219 dbSNP
rs369911012 3220 dbSNP
rs969452934 3223 dbSNP
rs1277827696 3227 dbSNP
rs1349989119 3229 dbSNP
rs917184632 3233 dbSNP
rs917998016 3235 dbSNP
rs1340096530 3237 dbSNP
rs372628047 3238 dbSNP
rs962163924 3239 dbSNP
rs1015116705 3244 dbSNP
rs757519798 3246 dbSNP
rs952379800 3247 dbSNP
rs1307198292 3248 dbSNP
rs1439923879 3253 dbSNP
rs73096902 3262 dbSNP
rs1474407282 3272 dbSNP
rs1329265561 3273 dbSNP
rs1163064029 3280 dbSNP
rs1392972300 3286 dbSNP
rs1391962519 3298 dbSNP
rs1363512319 3299 dbSNP
rs1407259060 3306 dbSNP
rs1327177647 3307 dbSNP
rs1370009084 3308 dbSNP
rs553151369 3309 dbSNP
rs1022761032 3319 dbSNP
rs1353510602 3323 dbSNP
rs534582242 3326 dbSNP
rs1424908207 3328 dbSNP
rs1284540788 3332 dbSNP
rs1386498152 3332 dbSNP
rs1212428256 3338 dbSNP
rs1009587489 3341 dbSNP
rs1206720682 3342 dbSNP
rs138425063 3342 dbSNP
rs1483058455 3342 dbSNP
rs1484963667 3359 dbSNP
rs1187508040 3365 dbSNP
rs1369402592 3366 dbSNP
rs901527458 3367 dbSNP
rs1430436724 3368 dbSNP
rs886062310 3369 dbSNP
rs1373752849 3371 dbSNP
rs1395381050 3372 dbSNP
rs1334820306 3374 dbSNP
rs570760091 3380 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
     
Conditions Flp-In T-REx 293-hAGO1 cells
Location of target site CDS
Original Description (Extracted from the article) ... Validation of interactions identified by CLASH suppports their reliability. ...

- Helwak A; Kudla G; Dudnakova T; Tollervey D, 2013, Cell.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1 
miRNA  3' cuucagUGAGGGUC-CGUCG---ACGUu 5'
                || || || |||||   |||| 
Target 5' ------AC-CCAAGAGCAGCTTGTGCAc 3'
 		1 - 21
Article - Helwak A; Kudla G; Dudnakova T; Tollervey D
- Cell, 2013
MicroRNAs (miRNAs) play key roles in gene regulation, but reliable bioinformatic or experimental identification of their targets remains difficult. To provide an unbiased view of human miRNA targets, we developed a technique for ligation and sequencing of miRNA-target RNA duplexes associated with human AGO1. Here, we report data sets of more than 18,000 high-confidence miRNA-mRNA interactions. The binding of most miRNAs includes the 5' seed region, but around 60% of seed interactions are noncanonical, containing bulged or mismatched nucleotides. Moreover, seed interactions are generally accompanied by specific, nonseed base pairing. 18% of miRNA-mRNA interactions involve the miRNA 3' end, with little evidence for 5' contacts, and some of these were functionally validated. Analyses of miRNA:mRNA base pairing showed that miRNA species systematically differ in their target RNA interactions, and strongly overrepresented motifs were found in the interaction sites of several miRNAs. We speculate that these affect the response of RISC to miRNA-target binding.
LinkOut: [PMID: 23622248]
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
BRCA -0.374 0 -0.307 0 84 Click to see details
LUAD -0.749 0 -0.713 0 12 Click to see details
HNSC -0.408 0 -0.327 0.02 42 Click to see details
KICH 0.351 0.04 0.129 0.27 25 Click to see details
KIRP 0.296 0.05 0.321 0.04 32 Click to see details
KIRC -0.179 0.07 -0.169 0.08 68 Click to see details
PCPG 0.926 0.12 0.500 0.33 3 Click to see details
ESCA -0.283 0.2 -0.200 0.28 11 Click to see details
CESC 0.802 0.2 1.000 0.5 3 Click to see details
LUSC -0.129 0.22 -0.100 0.28 38 Click to see details
LIHC 0.108 0.23 0.092 0.26 49 Click to see details
STAD -0.089 0.31 -0.188 0.15 32 Click to see details
THCA 0.058 0.33 0.017 0.45 59 Click to see details
UCEC 0.089 0.36 0.025 0.46 19 Click to see details
BLCA 0.085 0.37 0.094 0.36 18 Click to see details
PRAD 0.035 0.4 0.036 0.4 50 Click to see details
COAD 0.101 0.41 0.429 0.14 8 Click to see details
CHOL 0.081 0.42 0.100 0.4 9 Click to see details
PAAD -0.006 0.5 -0.400 0.3 4 Click to see details
PAAD -0.006 0.5 -0.400 0.3 4 Click to see details
PAAD -0.006 0.5 -0.400 0.3 4 Click to see details
195 hsa-miR-1301-3p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT035957 MRPL10 mitochondrial ribosomal protein L10 1 1
MIRT035958 ZNF816 zinc finger protein 816 1 1
MIRT035959 HDLBP high density lipoprotein binding protein 1 1
MIRT035960 GNG10 G protein subunit gamma 10 1 1
MIRT035961 MICALL1 MICAL like 1 1 1
MIRT035962 CCNH cyclin H 1 1
MIRT035963 RAD23B RAD23 homolog B, nucleotide excision repair protein 1 1
MIRT035964 HIST2H2AC histone cluster 2 H2A family member c 1 1
MIRT035965 PARL presenilin associated rhomboid like 1 1
MIRT035966 TXN thioredoxin 1 1
MIRT035967 CREBBP CREB binding protein 1 1
MIRT035968 CYTB cytochrome b 1 1
MIRT035969 GLI3 GLI family zinc finger 3 1 1
MIRT035970 HMGCS1 3-hydroxy-3-methylglutaryl-CoA synthase 1 1 1
MIRT035971 PREP prolyl endopeptidase 1 1
MIRT035972 COL6A1 collagen type VI alpha 1 chain 1 1
MIRT035973 ATP5A1 ATP synthase, H+ transporting, mitochondrial F1 complex, alpha subunit 1, cardiac muscle 1 1
MIRT035974 ADCY3 adenylate cyclase 3 1 1
MIRT035975 POLB DNA polymerase beta 1 1
MIRT035976 HMGA1 high mobility group AT-hook 1 1 1
MIRT035977 SKP1 S-phase kinase associated protein 1 1 1
MIRT035978 ADD2 adducin 2 1 1
MIRT035979 ANXA11 annexin A11 1 1
MIRT035980 CORO1C coronin 1C 1 1
MIRT035981 MDH2 malate dehydrogenase 2 1 1
MIRT035982 BICD2 BICD cargo adaptor 2 1 1
MIRT035983 SPTBN1 spectrin beta, non-erythrocytic 1 1 1
MIRT035984 CDK5RAP2 CDK5 regulatory subunit associated protein 2 1 1
MIRT035985 POLR3H RNA polymerase III subunit H 1 1
MIRT035986 COX1 cytochrome c oxidase subunit I 1 1
MIRT035987 HEATR2 dynein axonemal assembly factor 5 1 1
MIRT035988 RPS5 ribosomal protein S5 1 1
MIRT035989 CCT3 chaperonin containing TCP1 subunit 3 1 1
MIRT035990 YWHAB tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein beta 1 1
MIRT035991 RPL3 ribosomal protein L3 1 1
MIRT035992 TMPO thymopoietin 1 1
MIRT035993 COPE coatomer protein complex subunit epsilon 1 1
MIRT035994 NONO non-POU domain containing octamer binding 1 1
MIRT035995 BLCAP bladder cancer associated protein 1 1
MIRT035996 NUP133 nucleoporin 133 1 1
MIRT035997 VCP valosin containing protein 1 1
MIRT035998 ARIH2 ariadne RBR E3 ubiquitin protein ligase 2 1 1
MIRT035999 SON SON DNA binding protein 1 1
MIRT036000 ATP5J ATP synthase, H+ transporting, mitochondrial Fo complex subunit F6 1 1
MIRT036001 VIM vimentin 1 1
MIRT036002 FKBP8 FK506 binding protein 8 1 1
MIRT036003 SPECC1L sperm antigen with calponin homology and coiled-coil domains 1 like 1 1
MIRT036004 ZCCHC14 zinc finger CCHC-type containing 14 1 1
MIRT036005 TXNL4A thioredoxin like 4A 1 1
MIRT036006 UBE2J2 ubiquitin conjugating enzyme E2 J2 1 1
MIRT036007 FOPNL FGFR1OP N-terminal like 1 1
MIRT036008 VDAC1 voltage dependent anion channel 1 1 1
MIRT036009 CDIP1 cell death inducing p53 target 1 1 1
MIRT036010 EBNA1BP2 EBNA1 binding protein 2 1 1
MIRT036011 CD276 CD276 molecule 1 1
MIRT036012 RPS2 ribosomal protein S2 1 1
MIRT036013 USP28 ubiquitin specific peptidase 28 1 1
MIRT036014 ZMIZ1 zinc finger MIZ-type containing 1 1 1
MIRT036015 B4GALT7 beta-1,4-galactosyltransferase 7 1 1
MIRT036016 CAND1 cullin associated and neddylation dissociated 1 1 1
MIRT036017 CCDC104 cilia and flagella associated protein 36 1 1
MIRT036018 IMPDH1 inosine monophosphate dehydrogenase 1 1 1
MIRT036019 ATXN2L ataxin 2 like 1 1
MIRT036020 PARP1 poly(ADP-ribose) polymerase 1 1 1
MIRT036021 TNXB tenascin XB 1 1
MIRT036022 SYNGR1 synaptogyrin 1 1 1
MIRT036023 TUT1 terminal uridylyl transferase 1, U6 snRNA-specific 1 1
MIRT036024 ATXN7L3B ataxin 7 like 3B 1 1
MIRT036025 BCL2L13 BCL2 like 13 1 1
MIRT036026 RBM42 RNA binding motif protein 42 1 1
MIRT036027 HDGF heparin binding growth factor 1 1
MIRT036028 NAT8L N-acetyltransferase 8 like 1 1
MIRT036029 DLST dihydrolipoamide S-succinyltransferase 1 1
MIRT036030 CEP104 centrosomal protein 104 1 1
MIRT036031 NCOR1 nuclear receptor corepressor 1 1 1
MIRT036032 COCH cochlin 1 1
MIRT036033 NUTF2 nuclear transport factor 2 1 1
MIRT036034 KMT2E lysine methyltransferase 2E 1 1
MIRT036035 RANGAP1 Ran GTPase activating protein 1 1 1
MIRT036036 SEPHS2 selenophosphate synthetase 2 1 1
MIRT036037 DYNC1I2 dynein cytoplasmic 1 intermediate chain 2 1 1
MIRT036038 ZCCHC24 zinc finger CCHC-type containing 24 1 1
MIRT036039 TRRAP transformation/transcription domain associated protein 1 1
MIRT036040 INPP4A inositol polyphosphate-4-phosphatase type I A 1 1
MIRT036041 CHN1 chimerin 1 1 1
MIRT036042 FECH ferrochelatase 1 1
MIRT036043 DCTD dCMP deaminase 1 1
MIRT036044 UBA1 ubiquitin like modifier activating enzyme 1 1 1
MIRT036045 PKM pyruvate kinase, muscle 1 1
MIRT036046 SSRP1 structure specific recognition protein 1 1 1
MIRT036047 CELF1 CUGBP Elav-like family member 1 1 1
MIRT036048 TSR2 TSR2, ribosome maturation factor 1 1
MIRT036049 TP53BP2 tumor protein p53 binding protein 2 1 1
MIRT036050 GSG2 histone H3 associated protein kinase 1 1
MIRT036051 WDFY1 WD repeat and FYVE domain containing 1 1 1
MIRT036052 RPA1 replication protein A1 1 1
MIRT036053 TMEM41A transmembrane protein 41A 1 1
MIRT036054 BIRC5 baculoviral IAP repeat containing 5 1 1
MIRT036055 NOP2 NOP2 nucleolar protein 1 1
MIRT036056 PEF1 penta-EF-hand domain containing 1 1 1
MIRT036057 CYB5D1 cytochrome b5 domain containing 1 1 1
MIRT036058 HIGD1A HIG1 hypoxia inducible domain family member 1A 1 1
MIRT036059 WDR61 WD repeat domain 61 1 1
MIRT036060 MINK1 misshapen like kinase 1 1 1
MIRT036061 RPL35A ribosomal protein L35a 1 1
MIRT036062 WNT3 Wnt family member 3 1 1
MIRT036063 SYNJ2 synaptojanin 2 1 1
MIRT036064 CFL1 cofilin 1 1 1
MIRT036065 ALDOA aldolase, fructose-bisphosphate A 1 1
MIRT036066 HIF1AN hypoxia inducible factor 1 alpha subunit inhibitor 1 1
MIRT064841 ZBTB18 zinc finger and BTB domain containing 18 2 4
MIRT090782 MBNL1 muscleblind like splicing regulator 1 2 2
MIRT163227 EDEM1 ER degradation enhancing alpha-mannosidase like protein 1 2 2
MIRT214143 LMNB1 lamin B1 2 2
MIRT291875 ZNF333 zinc finger protein 333 2 2
MIRT292477 ZNF507 zinc finger protein 507 2 2
MIRT306035 SKIL SKI like proto-oncogene 2 2
MIRT443004 TRIOBP TRIO and F-actin binding protein 2 2
MIRT457830 ITPRIP inositol 1,4,5-trisphosphate receptor interacting protein 2 2
MIRT460067 RFTN2 raftlin family member 2 2 2
MIRT460342 ARL14EP ADP ribosylation factor like GTPase 14 effector protein 2 2
MIRT463060 ZNF639 zinc finger protein 639 2 2
MIRT466204 TMED10 transmembrane p24 trafficking protein 10 2 2
MIRT476159 GOLGA8B golgin A8 family member B 2 2
MIRT486953 HLA-B major histocompatibility complex, class I, B 2 2
MIRT492391 SEMA6A semaphorin 6A 2 2
MIRT495050 CTRC chymotrypsin C 2 4
MIRT500010 ABCF2 ATP binding cassette subfamily F member 2 2 8
MIRT501565 PLEKHF2 pleckstrin homology and FYVE domain containing 2 2 4
MIRT502680 CSNK1G3 casein kinase 1 gamma 3 2 8
MIRT503058 CAB39 calcium binding protein 39 2 2
MIRT504615 PLK1 polo like kinase 1 2 2
MIRT505706 SESN2 sestrin 2 2 2
MIRT506197 PHF19 PHD finger protein 19 2 2
MIRT506821 KIF23 kinesin family member 23 2 6
MIRT513782 PAWR pro-apoptotic WT1 regulator 2 6
MIRT527011 MAGI2 membrane associated guanylate kinase, WW and PDZ domain containing 2 2 4
MIRT527806 KLRD1 killer cell lectin like receptor D1 2 2
MIRT537896 DYRK2 dual specificity tyrosine phosphorylation regulated kinase 2 2 4
MIRT537925 DST dystonin 2 2
MIRT540049 FOXC1 forkhead box C1 2 2
MIRT543395 DROSHA drosha ribonuclease III 2 2
MIRT545447 SC5D sterol-C5-desaturase 2 4
MIRT546876 RAB10 RAB10, member RAS oncogene family 2 4
MIRT549419 ACVR2B activin A receptor type 2B 2 2
MIRT551857 ASB6 ankyrin repeat and SOCS box containing 6 2 2
MIRT552453 ZNF410 zinc finger protein 410 2 2
MIRT552772 YIPF6 Yip1 domain family member 6 2 4
MIRT552788 YAF2 YY1 associated factor 2 2 2
MIRT554247 SLAIN2 SLAIN motif family member 2 2 2
MIRT554773 RHEBP1 RHEB pseudogene 1 2 4
MIRT555862 PAIP1 poly(A) binding protein interacting protein 1 2 2
MIRT556475 LIPA lipase A, lysosomal acid type 2 2
MIRT556655 KMT2D lysine methyltransferase 2D 2 4
MIRT558210 EFCAB14 EF-hand calcium binding domain 14 2 4
MIRT558306 DUSP14 dual specificity phosphatase 14 2 2
MIRT558818 CDCA4 cell division cycle associated 4 2 4
MIRT559370 ATP13A3 ATPase 13A3 2 2
MIRT559541 ARGLU1 arginine and glutamate rich 1 2 4
MIRT563022 ZNF680 zinc finger protein 680 2 2
MIRT563036 NBPF12 NBPF member 12 2 2
MIRT563791 SLC28A1 solute carrier family 28 member 1 2 2
MIRT565903 SCAMP2 secretory carrier membrane protein 2 2 2
MIRT566957 LBR lamin B receptor 2 2
MIRT567971 CPEB3 cytoplasmic polyadenylation element binding protein 3 2 2
MIRT570389 TSC22D2 TSC22 domain family member 2 2 2
MIRT575250 Timp3 tissue inhibitor of metalloproteinase 3 2 2
MIRT611519 ZNF25 zinc finger protein 25 2 2
MIRT611592 POTED POTE ankyrin domain family member D 2 2
MIRT614228 NPTXR neuronal pentraxin receptor 2 2
MIRT625933 SCYL3 SCY1 like pseudokinase 3 2 2
MIRT627320 TULP4 tubby like protein 4 2 2
MIRT631516 CTBS chitobiase 2 2
MIRT640705 MRS2 MRS2, magnesium transporter 2 2
MIRT642208 RUVBL2 RuvB like AAA ATPase 2 2 2
MIRT642767 FAM9C family with sequence similarity 9 member C 2 2
MIRT648411 KIAA0146 scaffolding protein involved in DNA repair 1 1
MIRT658045 FUT11 fucosyltransferase 11 2 2
MIRT663720 GLUL glutamate-ammonia ligase 2 2
MIRT698536 TFRC transferrin receptor 2 2
MIRT699988 RPS24 ribosomal protein S24 2 2
MIRT700433 PURB purine rich element binding protein B 2 2
MIRT705890 ADCY9 adenylate cyclase 9 2 2
MIRT706974 XPO5 exportin 5 2 2
MIRT710564 KIAA1958 KIAA1958 2 2
MIRT714070 RUNDC3B RUN domain containing 3B 2 2
MIRT716931 FAM13A family with sequence similarity 13 member A 2 2
MIRT717341 RAB40A RAB40A, member RAS oncogene family 2 2
MIRT717738 MYLK myosin light chain kinase 5 2
MIRT722963 SLC25A26 solute carrier family 25 member 26 2 2
MIRT723470 WIPF2 WAS/WASL interacting protein family member 2 2 2
MIRT732447 STAT3 signal transducer and activator of transcription 3 2 0
MIRT733631 SIRT1 sirtuin 1 3 0
MIRT733632 CCND1 cyclin D1 3 0
MIRT736012 RHEB Ras homolog, mTORC1 binding 3 0
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-mir-1301 Cisplatin 5460033 NSC119875 approved resistant High Gastric Cancer cell line (SGC-7901)
hsa-mir-1301 Cisplatin 5460033 NSC119875 approved resistant High Gastric Cancer cell line (BGC823)
hsa-mir-1301 Dabrafenib 44462760 NSC764134 approved resistant cell line (A375)
hsa-mir-1301 Paclitaxel 36314 NSC125973 approved sensitive cell line (W1)
hsa-mir-1301 Topotecan 60699 NSC609699 approved sensitive cell line (W1)
hsa-mir-1301 Androstenedione 6128 NSC9563 sensitive cell line (MCF-7)
hsa-mir-1301 Androstenedione+Letrozole sensitive cell line (MCF-7)
hsa-mir-1301 Cisplatin 5460033 NSC119875 approved sensitive cell line (BxPC3)
hsa-mir-1301 Cisplatin 5460033 NSC119875 approved resistant cell line (SGC-7901)
hsa-mir-1301 Cisplatin 5460033 NSC119875 approved resistant cell line (BGC-823)
hsa-miR-1301-3p Oxaliplatin 6857599 NSC266046 approved sensitive High Colorectal Cancer cell line (RKO)
hsa-miR-1301-3p Gemcitabine 60750 NSC613327 approved resistant High Pancreatic Cancer cell line (SW1990)
hsa-miR-1301-3p Gemcitabine 60750 NSC613327 approved sensitive High Pancreatic Cancer cell line (SW1990)
hsa-miR-1301-3p Plx-4720 24180719 NSC757438 sensitive High Thyroid Cancer cell line (8505c, BCPAP)
hsa-miR-1301-3p Imatinib 5291 NSC743414 approved sensitive Low Chronic Myelogenous Leukemia cell line (K562)
hsa-miR-1301-3p Cisplatin 5460033 NSC119875 approved sensitive High Pancreatic Cancer cell line (BxPC-3)
hsa-miR-1301-3p Dabrafenib 44462760 NSC764134 approved sensitive High Melanoma cell line (A375, IGR37, 501Mel)
hsa-miR-1301-3p Vemurafenib 42611257 NSC761431 approved sensitive High Melanoma cell line (A375, IGR37, 501Mel)
hsa-miR-1301-3p Cisplatin 5460033 NSC119875 approved resistant High Gastric Cancer tissue
hsa-miR-1301-3p Fluorouracil 3385 NSC19893 approved resistant High Gastric Cancer tissue
hsa-miR-1301-3p Trametinib 11707110 NSC758246 approved sensitive High Melanoma cell line (M14) (2uM)
hsa-miR-1301-3p Vemurafenib 42611257 NSC761431 approved sensitive High Melanoma cell line (M14) (50nM)
hsa-miR-1301-3p Vemurafenib 42611257 NSC761431 approved sensitive High Melanoma cell line (M14) (2uM)
hsa-miR-1301-3p Trametinib 11707110 NSC758246 approved sensitive High Melanoma cell line (M14) (50nM)
hsa-miR-1301-3p Epirubicin 41867 NSC256942 approved sensitive Low Osteosarcoma cell line (U-2-OS, SAOS-2)
hsa-miR-1301-3p Gemcitabine 60750 NSC613327 approved resistant High Pancreatic Cancer cell line (AsPC-1)
hsa-miR-1301-3p Cisplatin 5460033 NSC119875 approved resistant High Gastric Cancer cell line (SGC-7901, BGC-823)
hsa-miR-1301-3p Cisplatin 5460033 NSC119875 approved resistant High Ovarian Cancer cell line (A2780CP20)
hsa-miR-1301-3p Cisplatin 5460033 NSC119875 approved resistant High Non-Small Cell Lung Cancer cell line (A549)
hsa-miR-1301-3p Oxaliplatin 6857599 NSC266046 approved sensitive High Colorectal Cancer cell line (SW480, HCT-116)
hsa-miR-1301-3p Cisplatin 5460033 NSC119875 approved sensitive High Epithelial Ovarian Cancer cell line (SKOV3)
hsa-miR-1301-3p Gefitinib 123631 NSC715055 approved resistant cell line (HCC827)
hsa-miR-1301-3p Osimertinib 71496458 NSC779217 approved sensitive cell line (HCC827)
hsa-miR-1301-3p Vemurafenib 42611257 NSC761431 approved resistant cell line (451Lu)
hsa-miR-1301-3p Palbociclib 5330286 NSC758247 approved resistant tissue (breast cancer)
hsa-miR-1301-3p Cisplatin 5460033 NSC119875 approved sensitive cell line
hsa-miR-1301-3p Doxorubicin 31703 NSC123127 approved sensitive cell line (HS578T)
hsa-miR-1301-3p Cisplatin 5460033 NSC119875 approved resistant cell line (A549)
hsa-miR-1301-3p Tamoxifen+Fulvestrant resistant cell line (LCC9)
hsa-miR-1301-3p Cisplatin 5460033 NSC119875 approved resistant cell line (CP20)
hsa-miR-1301-3p Cisplatin 5460033 NSC119875 approved resistant cell line (CIS)
hsa-miR-1301-3p 4-Hydroxytamoxifen+Tamoxifen sensitive cell line (LY2)
hsa-miR-1301-3p Ethanol+Tamoxifen sensitive cell line (LY2)
hsa-miR-1301-3p Cisplatin 5460033 NSC119875 approved resistant cell line (RPMI2650)
hsa-miR-1301-3p Cisplatin 5460033 NSC119875 approved sensitive cell line (A549)

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