miRTarBase - #MIRT035982


—
pre-miRNA Information
pre-miRNA hsa-mir-1301   
Genomic Coordinates chr2: 25328640 - 25328721
Synonyms MIRN1301, hsa-mir-1301, MIR1301
Description Homo sapiens miR-1301 stem-loop
Comment None
RNA Secondary Structure
Associated Diseases

Mature miRNA Information
Mature miRNA hsa-miR-1301-3p
Sequence 48| UUGCAGCUGCCUGGGAGUGACUUC |71
Evidence Experimental
Experiments Illumina
Editing Events in miRNAs
Modification Type Position on miR Chromosome DNA Strand Genomic Position (hg38) List of PMIDs Variant details
A-to-I 5 2 - 25328670 26449202, 27298257, 28411194, 28550310, 28855684, 29267965, 29950133, 29165639, 29233923 MiREDiBase
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs775188648 6 dbSNP
rs1022364375 11 dbSNP
rs938368115 12 dbSNP
rs771728471 15 dbSNP
rs778709428 19 dbSNP
rs1358947891 20 dbSNP
Putative Targets

miRNA Expression profile
Human miRNA Tissue Atlas
miRNAs in Extracellular Vesicles
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol BICD2   
Synonyms SMALED2, bA526D8.1
Description BICD cargo adaptor 2
Transcript NM_001003800   
Other Transcripts NM_015250   
Expression
Putative miRNA Targets on BICD2
3'UTR of BICD2
(miRNA target sites are highlighted)		 
>BICD2|NM_001003800|3'UTR
   1 GGGCTGTGGGGCGCCGCACGCTGCAGCTAACATCTGCTTCACCTCAACTAACCCAGCAGCAGCGGGACGGCGGTGCTAGG
  81 TCAATCTTAACGTGACTAATGCACAGAGGGTAGGAGTCTAGCCGAGGCGCCATGGGGCGTTGCATCAGCAGGACACTTGT
 161 GAGAGCTTTGTGTCGCTTCTCACTCCTCAAAGCCCCCTCAGGAGCACCCAGTCCTCAGCTGCTCTCTTAGGTGGGGGTCA
 241 GAGGTGGGGATAGAGCTGCACATTCTTGCAGCAGATGTGTGATGAAAGCATCTTCTAAGCCCTGCGCACCCGTGGGGAAA
 321 CCCAAGGGAGGAGTCCTGGTCCTGCTCCCTCAGCACCCAAAAGGGGCAGAACCTGAGTTGAGACTTGCATGTTCCTCGCA
 401 TGTGTCTAATGTCAGCACTAGAAAGCAGTTTTAGGAGGTTCCAGCCTGCAGCATAGGTACGACCTCAGAGGATGGCTTTG
 481 CACTTGGCATAGTTTCATGGAAAGGAGTACGTTGTAGTTTATGCAGTATCTGACTGCAAATCATATTCAGGAAAGAAGTG
 561 CAGAATTTCTTCCCCAAGCCCAGAGAAGAGCAGCCCTGAGCCCCTGTATTCTGCTGGCCAGACACACATGGCACAGACAC
 641 AGCTGACCATAACCCAGGAATCCAGAGCTCGGTTTCTCATTTCTGAGATCAGGATGCTTGTATAGTGGCCTGTGAGGTGA
 721 CAGATTGGCAGGGCCCAAGGCCCCAGGTTTTCATTTTTCATGAGAAAAGCTTTCCAAGTGCCTGGCCAGACCTTGGTCCT
 801 TAGTGCAGAGCCCGTCCTTTTGTACTTGGGGTGACCCCAGCAGCCAATTATCCGGCCTTCCATAGGGGGTTCAGTCCCAA
 881 AGACATGGGGCTTTGAAAACCCTAGCCTGAAGTCTGAGCCACCAAGGGCTTGGCTGGGTTGGACACCCACAGGTGTATCC
 961 AGAGCCCAGCCCGGTGCTGGGAAAGCTTTGCATAGGGCCAGGGCCACTTGTCAGGATTCACAGGTAGGAGATGTTTAGGT
1041 CTCTTTATTTAGTGCAATCTGGGGGATGGCAACAGAGAAAGAGGAAAGGTAGCTGTAGGGTTCTCCCATTTCCAGAGGCT
1121 CCATCCACACCTGCCTTCCCACATTCTGAGCAGAACTTTTCTCAGTACTTTTTTCCCGATCACCCTGTGGGACCAGCTGG
1201 ACCTGAGGCTGCAGTCTTCTCTCCTGCAGGCTGCTTGCCTTGTCTCTCATGCGGAAGAGGCATTCGAGTTACCTGGTGAG
1281 AGACCGTGTTGCCCCCTCCCACAGCTCTCTGCCCTGCGCGTTCTTCCCTTTGGTGCCGAGTATGTTTCGGTCCCCTCCAG
1361 ACTCCAGGACACGCCCATGTATGTCCCCTGCGTGTTCATCCTGGGCCCAGATCCCCCTGCCCCAGCAAGACTCGCAGTGG
1441 GATGGCTGCTGGCATGCCCACCCTGCATGCGCTTTGCCCTCTCCTTGCAAGCCTGGCACATAGCTTCTCTCCATACTCCT
1521 AAGGGACTTTGCAGACACCCAAGCCACTGGGACCCCTGCTAACACATGCAGGTCTTCTCTTCTGCCAACTAACGTGCTCG
1601 CGCCCTCCCAGCACGTGGAGAGCTTCAATTGTCAGATAAACAGGAAGCGACAGATGACCGCTTTCTAACGCTCTCTTTTC
1681 TCCCGTTTTCAGCTGTAGAGTAGCTGCCAGGAGGACTTGGCCACCCGGCCCTGTCACACTGCAGCCCCTTCCCCTTCCCT
1761 CTCGTGGCCCACAAGGAGGAAGGAAGGGCAACCTAAAAGCCCACTTAGAAACTTTTTGGATATGCCACTGCAATTCTTTT
1841 CAAAATAGCATTCCCCAGGTTTTTAATGGGAGGAAAAAAAGCTTTAATGTTGAGCATGCTGCGAGCTGCTGCGTGGAAAG
1921 GCCTCTGTATGGGCCGAAGACCCTTCTTCCCTGGCTGCCAGGCTCGCCAGGAGCCCACTGGAAACGCCCACCACGGGGGC
2001 TCCTTGTTACACATGTTCTTTTTTTATCCGATCAACCTGTGCACTTTTGATATTTTGATATTATATTTGCTTCCTTAATT
2081 CCTCGCGTAGAGACGGTCTCAGGTGCCGTGGTCTATGCTCGTGGTCCTGTAGCTGTCCGCCTCAGCTCCCACCGTGTTTG
2161 TCTGGTGTCAGCACGAGGCAGAGCTGTGTGCTCCATAGCGTGTAGCTTTAGACTCGGAGATGAGTGCTTTGACCCAGCGA
2241 GGAGCTCAGCTAAGTGTATCCACGCTGTGGTTCAGCAGCCTTTAGATCATACGGCATTGTGGTTCATGTTTGAAATTACA
2321 GATTTTAAATGCCATGTTCATTAAGAAATCCAGGGTATTCAGATTCTGGGGTTTTTCATATTGTATTATTATTATTCTTA
2401 GGAATAGTTCAATGTAACAAGAAGAAAACTTGACCTTTGCTCTGGTTAAAACAGTAATAGGCACTTGAAAAAAAAAGATA
2481 AATTATTGAATGAGTAGTATTACCTACAAATTCCAGAATTTTCTGGGTTTTAGGACGTTGTGAAGCATGACTGATTAACA
2561 GAATTTTATACAACTGTACCAATAAAATTCCAAATTGGAATTGTTTTGTTACTCTGGTTGTTGTGCCAAATTGTGGTACA
2641 CTTAGAAAATTCTACAGTCGTCGATTTTTAGGGTGTTCTCTTTCAACACCTTTTTGTTAGTAATCATTGCCAGTAGTGCC
2721 TTCATCAGTTAAGGGAGGTGTCCCAGCACAGATCATTCTCAAAAGCGAGCAGGGAAGAGCTAGTGGGCATGCTGAAGGCC
2801 AGCGTGGACAGCAGGTGAGGCAGGTGCTCCTCACACCCAGACCTGGGCATCTTCATTGAGGGAAAGAAAACAGTCATTGT
2881 GCAAAATTCTGTTAGTCAGTGATTCTTTACTTGCAAATTCAGGGGCTTAGAAAATGAAAGCAAACACAAAACCTTGAGTG
2961 TGCTTTGGGAACCAAATGGACCTTCTGGGACAAGCTGAGCAAGCTGTATGAACGCCACGTTTGTGAAGAGCTGAGGGTAT
3041 CAGGAGGGCCGACGCTGTGTTGGCATGCGCAGTAGGGGATGAGGGTTAGCCATAGTATTCTTTGCAAATGTGAAAGCGAG
3121 ACATTATATCTTCTCTTGCTTGGTGTAACTAATCACTGTTAATTTCAGGAAACAGAACTCATTAAAACTCCTTAGCAAAC
3201 CAGGTCTACATCCTGTTTTGTTTGCTGAGTGAGGTTAGTGGGAGTGGTCAAATTGGTACTCTTGGAGGAAGAAAAACTGT
3281 CCTTCCTTCTCCAAAAAAGGAAAAATTATAATAATATAAATGACAAAAATAAAAGAATTCTGTTTCCTGGAATAAGCATT
3361 TCTTATTCCTAGTTGTAGGGACTCCTATTTTTACCTTCCGTTACAGTGTTGATTCATAAGAAATATTGTTACATTTGAGA
3441 TAACTTCATCTGTATGGGGTATTTATTTGCAATGATGTCTGAGTACTGTATTTTTTCTGTGCATTACCTTAGTGTCAGAA
3521 TGTTGGTCTTTATTTTAAAGTCATATGCATGTTCTCCTGCCAAGGAACCTTTACACAGACCCAAACAAAAAAATAATAAT
3601 CAAATGCCTTCAATTTCTGAGAAAATGAGGCAGAGCATGGAAAAGGAATAGGAAGGAGAAATTAATTGAGATTTTCAGGA
3681 CACAGACATATGATGTGAATGCCTACAAAGCCAGTGCGCATAGGAACAGTGGGCCTGGGTAAAGAGTCACATTGGTAGGA
3761 CCAATAAAGAATAATAAAAAGACAAAGCACAAAAAAAAAAAAAAAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1 
miRNA  3' cuUCAGUGAGGGUCC----GUCGACGUu 5'
            :||||    ::||     ||||||| 
Target 5' ggGGTCAGAGGTGGGGATAGAGCTGCAc 3'
 234 - 261 144.00 -16.40
2 
miRNA  3' cuUCAGUGAGGGUC---CGUCGACGuu 5'
            ||  :| |||||    |||||||  
Target 5' tcAGGAGCACCCAGTCCTCAGCTGCtc 3'
 198 - 224 142.00 -20.60
3 
miRNA  3' cuucAGUGAGGGU--CCGUCGACGUu 5'
              |: |||||:    ||||||:| 
Target 5' ctctTTTCTCCCGTTTTCAGCTGTAg 3'
 1673 - 1698 142.00 -21.20
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
387216 20 ClinVar
1182885 136 ClinVar
COSN31555267 5 COSMIC
COSN29579442 15 COSMIC
COSN1382926 23 COSMIC
COSN30155540 34 COSMIC
COSN5124496 57 COSMIC
COSN30137555 61 COSMIC
COSN31595789 62 COSMIC
COSN31564275 72 COSMIC
COSN30540557 102 COSMIC
COSN30141156 128 COSMIC
COSN14774423 478 COSMIC
COSN21002311 876 COSMIC
COSN14763334 995 COSMIC
COSN14797069 1499 COSMIC
COSN31610587 1593 COSMIC
COSN30680668 1602 COSMIC
COSN30568128 1611 COSMIC
COSN20217860 1622 COSMIC
COSN30149586 1626 COSMIC
COSN26967858 1660 COSMIC
COSN30165936 1669 COSMIC
COSN30162729 1675 COSMIC
COSM7606096 1685 COSMIC
COSM5954106 1689 COSMIC
COSN28875754 1733 COSMIC
COSN30535794 1763 COSMIC
COSN31526790 1764 COSMIC
COSN31579098 1767 COSMIC
COSN31534171 1793 COSMIC
COSN31574097 1833 COSMIC
COSN31583887 1848 COSMIC
COSN2333890 1855 COSMIC
COSN31521419 1857 COSMIC
COSN28845162 1874 COSMIC
COSN31533558 1906 COSMIC
COSN6399643 1936 COSMIC
COSN31611249 2018 COSMIC
COSN27833823 2030 COSMIC
COSN26504850 2094 COSMIC
COSN31481478 2095 COSMIC
COSN31603429 2102 COSMIC
COSN31513551 2175 COSMIC
COSN31541695 2292 COSMIC
COSN31483853 2421 COSMIC
COSN31603128 2432 COSMIC
COSN29528954 2467 COSMIC
COSN30026905 2563 COSMIC
COSN31547903 2596 COSMIC
COSN2333889 2628 COSMIC
COSN31530379 2694 COSMIC
COSN24303155 2740 COSMIC
COSN32056112 2766 COSMIC
COSN31521581 2943 COSMIC
COSN31481146 3081 COSMIC
COSN9527928 3128 COSMIC
COSN32064061 3328 COSMIC
COSN30173234 3415 COSMIC
COSN31480779 3518 COSMIC
COSN17276532 3542 COSMIC
COSN31515140 3658 COSMIC
COSN31603489 3712 COSMIC
COSN31588686 3748 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs562747002 1 dbSNP
rs776882493 5 dbSNP
rs192369618 6 dbSNP
rs369835288 7 dbSNP
rs202007528 12 dbSNP
rs780776008 13 dbSNP
rs561687038 14 dbSNP
rs373817977 15 dbSNP
rs369592794 16 dbSNP
rs376313388 19 dbSNP
rs528694770 20 dbSNP
rs763889402 21 dbSNP
rs564069001 25 dbSNP
rs752484097 26 dbSNP
rs1415902771 29 dbSNP
rs1360499481 34 dbSNP
rs1231731343 37 dbSNP
rs1296717798 40 dbSNP
rs1031754766 43 dbSNP
rs772007562 45 dbSNP
rs767498609 46 dbSNP
rs1159309106 48 dbSNP
rs1318726681 53 dbSNP
rs1218503905 61 dbSNP
rs545583404 63 dbSNP
rs1444698100 66 dbSNP
rs1350836216 68 dbSNP
rs999368171 69 dbSNP
rs578131120 71 dbSNP
rs1423661805 72 dbSNP
rs62574681 73 dbSNP
rs891280557 80 dbSNP
rs556424835 84 dbSNP
rs1427166225 86 dbSNP
rs538163899 91 dbSNP
rs762591005 98 dbSNP
rs900085632 101 dbSNP
rs981731908 103 dbSNP
rs1300302305 106 dbSNP
rs1341141623 110 dbSNP
rs865999023 117 dbSNP
rs573671615 120 dbSNP
rs1268547079 122 dbSNP
rs1347723303 123 dbSNP
rs555349964 124 dbSNP
rs1399613491 128 dbSNP
rs941695891 129 dbSNP
rs1160339822 133 dbSNP
rs76331256 136 dbSNP
rs566952829 138 dbSNP
rs1006943047 139 dbSNP
rs929062675 144 dbSNP
rs879593684 159 dbSNP
rs1190371898 165 dbSNP
rs1247991771 166 dbSNP
rs1478292879 168 dbSNP
rs1481662110 170 dbSNP
rs554742961 174 dbSNP
rs1192550074 175 dbSNP
rs570762999 179 dbSNP
rs969915233 183 dbSNP
rs1399678424 186 dbSNP
rs1316270635 188 dbSNP
rs1198257570 192 dbSNP
rs1022828942 193 dbSNP
rs990513697 200 dbSNP
rs1242760622 208 dbSNP
rs901743311 210 dbSNP
rs569086325 220 dbSNP
rs1032118303 221 dbSNP
rs998920709 223 dbSNP
rs1451693445 224 dbSNP
rs1198004268 226 dbSNP
rs116761334 227 dbSNP
rs1441528772 230 dbSNP
rs1178995339 231 dbSNP
rs1029796850 236 dbSNP
rs997022783 237 dbSNP
rs12552502 241 dbSNP
rs1157068609 245 dbSNP
rs900033186 246 dbSNP
rs937059667 261 dbSNP
rs1406030058 262 dbSNP
rs1323053121 264 dbSNP
rs769346074 265 dbSNP
rs529204653 269 dbSNP
rs1236365104 282 dbSNP
rs1285603408 283 dbSNP
rs1356695193 295 dbSNP
rs1208715985 301 dbSNP
rs1202010601 302 dbSNP
rs981497060 305 dbSNP
rs761055007 306 dbSNP
rs1320479693 311 dbSNP
rs775752586 312 dbSNP
rs1047870696 316 dbSNP
rs989021121 319 dbSNP
rs957531856 322 dbSNP
rs1370411758 323 dbSNP
rs1401579301 332 dbSNP
rs929033893 348 dbSNP
rs567503840 353 dbSNP
rs928397495 354 dbSNP
rs549464456 356 dbSNP
rs1471231017 364 dbSNP
rs752203502 365 dbSNP
rs1045491576 366 dbSNP
rs985560376 367 dbSNP
rs1467600200 369 dbSNP
rs1332647175 388 dbSNP
rs1399941530 389 dbSNP
rs1390028916 394 dbSNP
rs948553992 396 dbSNP
rs954252202 397 dbSNP
rs561628503 398 dbSNP
rs990069634 400 dbSNP
rs1243659950 402 dbSNP
rs1374453025 404 dbSNP
rs1184879502 422 dbSNP
rs1290857713 433 dbSNP
rs957529028 440 dbSNP
rs924611529 441 dbSNP
rs1219103965 447 dbSNP
rs1257347304 448 dbSNP
rs1479655489 455 dbSNP
rs189279529 459 dbSNP
rs143423506 460 dbSNP
rs375935624 461 dbSNP
rs1257300738 462 dbSNP
rs1214966093 470 dbSNP
rs3203916 478 dbSNP
rs759392210 481 dbSNP
rs887626761 496 dbSNP
rs1048859408 510 dbSNP
rs1001316499 524 dbSNP
rs749380310 534 dbSNP
rs1403391619 536 dbSNP
rs1005779833 537 dbSNP
rs1413732873 545 dbSNP
rs905597777 548 dbSNP
rs1341761043 550 dbSNP
rs1400073337 554 dbSNP
rs533316706 557 dbSNP
rs1047360959 559 dbSNP
rs1235367744 560 dbSNP
rs993562523 562 dbSNP
rs906918096 563 dbSNP
rs1328708546 582 dbSNP
rs562765690 593 dbSNP
rs1210357725 595 dbSNP
rs1045439247 601 dbSNP
rs1489428710 602 dbSNP
rs948502271 614 dbSNP
rs1194455988 617 dbSNP
rs1261182155 618 dbSNP
rs915714747 621 dbSNP
rs949753037 623 dbSNP
rs1178894268 625 dbSNP
rs1378510715 627 dbSNP
rs1037369578 628 dbSNP
rs753783033 629 dbSNP
rs1054713387 632 dbSNP
rs1472246116 641 dbSNP
rs1419982218 655 dbSNP
rs912865146 656 dbSNP
rs1359283019 660 dbSNP
rs1388389485 662 dbSNP
rs778079741 668 dbSNP
rs1330520340 670 dbSNP
rs924531348 671 dbSNP
rs756312718 685 dbSNP
rs1356090325 687 dbSNP
rs933974794 692 dbSNP
rs1260164412 694 dbSNP
rs922619151 699 dbSNP
rs954189104 702 dbSNP
rs1454266524 703 dbSNP
rs1192118812 705 dbSNP
rs1437224198 722 dbSNP
rs747934786 725 dbSNP
rs975480202 726 dbSNP
rs1419877797 727 dbSNP
rs1237506593 729 dbSNP
rs544457423 730 dbSNP
rs1342862381 732 dbSNP
rs1205051930 734 dbSNP
rs1439402759 737 dbSNP
rs1393616272 740 dbSNP
rs1438678822 741 dbSNP
rs74896402 745 dbSNP
rs1017065241 747 dbSNP
rs566646493 751 dbSNP
rs951615298 755 dbSNP
rs1026313708 760 dbSNP
rs1315421299 761 dbSNP
rs1359034656 764 dbSNP
rs1004777247 769 dbSNP
rs1003775097 775 dbSNP
rs906865917 778 dbSNP
rs905654254 784 dbSNP
rs1045896473 785 dbSNP
rs1023940030 804 dbSNP
rs1012595799 806 dbSNP
rs1425242053 812 dbSNP
rs555686783 813 dbSNP
rs1054261086 814 dbSNP
rs1459761371 817 dbSNP
rs1333293839 824 dbSNP
rs766310310 830 dbSNP
rs1279560093 831 dbSNP
rs866687694 836 dbSNP
rs903054013 845 dbSNP
rs904767072 847 dbSNP
rs1371426262 851 dbSNP
rs540599196 853 dbSNP
rs548423034 854 dbSNP
rs1231926737 855 dbSNP
rs772242864 860 dbSNP
rs1165023485 862 dbSNP
rs866126410 863 dbSNP
rs1204244200 867 dbSNP
rs1417325785 869 dbSNP
rs1379138522 876 dbSNP
rs1484008311 883 dbSNP
rs975415272 885 dbSNP
rs558194518 898 dbSNP
rs909951563 905 dbSNP
rs1471103174 916 dbSNP
rs1256121374 922 dbSNP
rs1244873033 923 dbSNP
rs1197935370 924 dbSNP
rs1473940186 929 dbSNP
rs762039827 937 dbSNP
rs1292792112 944 dbSNP
rs375004856 947 dbSNP
rs539569013 961 dbSNP
rs940085361 964 dbSNP
rs371739830 965 dbSNP
rs984261443 972 dbSNP
rs908575925 973 dbSNP
rs1351668435 981 dbSNP
rs1450396579 989 dbSNP
rs1283617926 992 dbSNP
rs951613033 993 dbSNP
rs7862106 995 dbSNP
rs1340643292 996 dbSNP
rs373324688 997 dbSNP
rs970970973 1002 dbSNP
rs1023886007 1010 dbSNP
rs1012543839 1011 dbSNP
rs951999828 1026 dbSNP
rs74317560 1028 dbSNP
rs568363137 1030 dbSNP
rs546609779 1031 dbSNP
rs1263320462 1032 dbSNP
rs1475019640 1039 dbSNP
rs1184731145 1046 dbSNP
rs903000892 1057 dbSNP
rs1344133074 1062 dbSNP
rs1024116411 1075 dbSNP
rs1172848101 1083 dbSNP
rs1401892022 1086 dbSNP
rs1041584856 1087 dbSNP
rs528074047 1096 dbSNP
rs1300075162 1097 dbSNP
rs933858935 1099 dbSNP
rs1175540028 1105 dbSNP
rs1014443352 1111 dbSNP
rs1430576335 1114 dbSNP
rs1268934850 1117 dbSNP
rs1370440726 1119 dbSNP
rs570371788 1123 dbSNP
rs1235459752 1128 dbSNP
rs901099502 1130 dbSNP
rs1280127038 1135 dbSNP
rs71496409 1146 dbSNP
rs1345251798 1155 dbSNP
rs1039679933 1156 dbSNP
rs1284289049 1161 dbSNP
rs749817557 1165 dbSNP
rs760113075 1177 dbSNP
rs1048945392 1178 dbSNP
rs1201921180 1178 dbSNP
rs1248372348 1187 dbSNP
rs930090856 1190 dbSNP
rs1241701222 1192 dbSNP
rs1216615198 1197 dbSNP
rs1192744371 1201 dbSNP
rs530196701 1217 dbSNP
rs148903200 1226 dbSNP
rs904150921 1226 dbSNP
rs1160700178 1227 dbSNP
rs774928871 1228 dbSNP
rs530526089 1239 dbSNP
rs1400185066 1246 dbSNP
rs1223434577 1252 dbSNP
rs563081756 1253 dbSNP
rs1352097504 1256 dbSNP
rs970920113 1259 dbSNP
rs749331194 1266 dbSNP
rs1369269637 1268 dbSNP
rs901356912 1281 dbSNP
rs544396788 1285 dbSNP
rs958595038 1286 dbSNP
rs1202833492 1292 dbSNP
rs370147897 1295 dbSNP
rs1291455101 1301 dbSNP
rs1468829695 1306 dbSNP
rs940139867 1309 dbSNP
rs773195645 1313 dbSNP
rs770025339 1317 dbSNP
rs760290825 1318 dbSNP
rs967158228 1318 dbSNP
rs535167098 1319 dbSNP
rs998013855 1320 dbSNP
rs969980084 1322 dbSNP
rs1449451014 1323 dbSNP
rs1024587910 1327 dbSNP
rs748365315 1337 dbSNP
rs1236473128 1343 dbSNP
rs1336072091 1344 dbSNP
rs1171055170 1348 dbSNP
rs1039623643 1349 dbSNP
rs12344752 1351 dbSNP
rs1006837560 1353 dbSNP
rs1431210454 1358 dbSNP
rs888417799 1372 dbSNP
rs1048410101 1373 dbSNP
rs1419087863 1377 dbSNP
rs1196140078 1379 dbSNP
rs930010569 1380 dbSNP
rs1187262331 1381 dbSNP
rs918677644 1383 dbSNP
rs1437422782 1386 dbSNP
rs1179956926 1387 dbSNP
rs1390447523 1388 dbSNP
rs1259637222 1391 dbSNP
rs781038419 1392 dbSNP
rs999913572 1399 dbSNP
rs904201924 1401 dbSNP
rs754663467 1409 dbSNP
rs1464013812 1410 dbSNP
rs562387332 1415 dbSNP
rs1396253040 1419 dbSNP
rs540585749 1433 dbSNP
rs916769289 1434 dbSNP
rs901414007 1435 dbSNP
rs1413619849 1438 dbSNP
rs1290962247 1442 dbSNP
rs573162551 1446 dbSNP
rs958326319 1462 dbSNP
rs925584968 1467 dbSNP
rs562785558 1470 dbSNP
rs1376396937 1471 dbSNP
rs1004336827 1477 dbSNP
rs978461175 1479 dbSNP
rs967484578 1483 dbSNP
rs1048473382 1488 dbSNP
rs1187270485 1492 dbSNP
rs1255531933 1495 dbSNP
rs3739605 1499 dbSNP
rs546278282 1504 dbSNP
rs1194530945 1506 dbSNP
rs1372796788 1509 dbSNP
rs1408242551 1512 dbSNP
rs1460780017 1512 dbSNP
rs1375658969 1516 dbSNP
rs926638482 1518 dbSNP
rs1310503067 1521 dbSNP
rs997961601 1523 dbSNP
rs965194796 1535 dbSNP
rs948678884 1537 dbSNP
rs1354893895 1544 dbSNP
rs917169577 1551 dbSNP
rs1235113384 1555 dbSNP
rs992704321 1558 dbSNP
rs562433418 1563 dbSNP
rs1210462749 1564 dbSNP
rs1278210597 1566 dbSNP
rs1007197606 1567 dbSNP
rs1486890754 1577 dbSNP
rs1430489628 1582 dbSNP
rs532455136 1593 dbSNP
rs557538589 1594 dbSNP
rs779918322 1599 dbSNP
rs184343098 1600 dbSNP
rs191904362 1601 dbSNP
rs978527521 1602 dbSNP
rs994172580 1614 dbSNP
rs553200550 1615 dbSNP
rs1382654938 1625 dbSNP
rs187095678 1628 dbSNP
rs369804595 1636 dbSNP
rs540452114 1640 dbSNP
rs1404423399 1641 dbSNP
rs895289803 1642 dbSNP
rs1465242582 1648 dbSNP
rs377278066 1649 dbSNP
rs887292445 1650 dbSNP
rs1239838353 1651 dbSNP
rs1262460552 1652 dbSNP
rs200096848 1653 dbSNP
rs1336737444 1654 dbSNP
rs149742917 1655 dbSNP
rs367810607 1659 dbSNP
rs200999144 1660 dbSNP
rs768999215 1661 dbSNP
rs1275101858 1664 dbSNP
rs1214164529 1665 dbSNP
rs747439503 1666 dbSNP
rs775972107 1667 dbSNP
rs372258246 1669 dbSNP
rs746342629 1670 dbSNP
rs945676409 1672 dbSNP
rs1271944602 1675 dbSNP
rs1363038898 1677 dbSNP
rs1293344761 1683 dbSNP
rs202060753 1684 dbSNP
rs756734185 1685 dbSNP
rs748896707 1692 dbSNP
rs777468137 1695 dbSNP
rs755748660 1699 dbSNP
rs752531250 1703 dbSNP
rs912933130 1704 dbSNP
rs199868369 1709 dbSNP
rs1430268552 1714 dbSNP
rs748408912 1717 dbSNP
rs1299713384 1724 dbSNP
rs529408978 1726 dbSNP
rs754894376 1727 dbSNP
rs1255198099 1728 dbSNP
rs751455860 1730 dbSNP
rs1317308497 1732 dbSNP
rs368065653 1733 dbSNP
rs1230214084 1744 dbSNP
rs1308644588 1746 dbSNP
rs781606144 1758 dbSNP
rs562165380 1759 dbSNP
rs757997843 1763 dbSNP
rs547225038 1772 dbSNP
rs978578551 1773 dbSNP
rs1274351513 1777 dbSNP
rs543850165 1778 dbSNP
rs985317207 1779 dbSNP
rs10992429 1789 dbSNP
rs1176277892 1791 dbSNP
rs1247719556 1813 dbSNP
rs1475898921 1816 dbSNP
rs1165081914 1820 dbSNP
rs1417043949 1829 dbSNP
rs1425451930 1833 dbSNP
rs1459851403 1845 dbSNP
rs1026898943 1846 dbSNP
rs1354920803 1855 dbSNP
rs1462639521 1856 dbSNP
rs1297827921 1859 dbSNP
rs142202786 1860 dbSNP
rs975531210 1871 dbSNP
rs865793409 1873 dbSNP
rs897149538 1878 dbSNP
rs183120828 1879 dbSNP
rs1019213739 1881 dbSNP
rs1004444558 1885 dbSNP
rs1275481486 1886 dbSNP
rs756924204 1889 dbSNP
rs1013599119 1892 dbSNP
rs1418969504 1903 dbSNP
rs1251826007 1910 dbSNP
rs1204344760 1911 dbSNP
rs753499051 1912 dbSNP
rs192032168 1913 dbSNP
rs1179345787 1918 dbSNP
rs1188003284 1920 dbSNP
rs1489946146 1936 dbSNP
rs1256237479 1952 dbSNP
rs1474159456 1963 dbSNP
rs778313731 1965 dbSNP
rs1222767180 1966 dbSNP
rs995685766 1977 dbSNP
rs563756331 1985 dbSNP
rs936852363 1986 dbSNP
rs774873947 1989 dbSNP
rs1368922267 1993 dbSNP
rs796851044 1994 dbSNP
rs904043729 1995 dbSNP
rs1374937690 1998 dbSNP
rs766953133 2002 dbSNP
rs1308986372 2003 dbSNP
rs945627081 2010 dbSNP
rs1363340952 2012 dbSNP
rs188836361 2014 dbSNP
rs1214323519 2015 dbSNP
rs1295909911 2026 dbSNP
rs763593674 2029 dbSNP
rs1211189260 2030 dbSNP
rs1278920903 2036 dbSNP
rs753001823 2043 dbSNP
rs912879981 2047 dbSNP
rs903095885 2063 dbSNP
rs1475071684 2070 dbSNP
rs1184529670 2072 dbSNP
rs1396684366 2080 dbSNP
rs16908498 2084 dbSNP
rs943736830 2086 dbSNP
rs910965260 2087 dbSNP
rs759994263 2094 dbSNP
rs985651301 2107 dbSNP
rs952556170 2108 dbSNP
rs1318900681 2115 dbSNP
rs1027262355 2119 dbSNP
rs972647676 2120 dbSNP
rs1156934804 2121 dbSNP
rs1453090050 2129 dbSNP
rs1302236079 2135 dbSNP
rs117206397 2138 dbSNP
rs769821350 2150 dbSNP
rs1224947831 2151 dbSNP
rs1024891261 2153 dbSNP
rs1013533566 2154 dbSNP
rs1206756516 2158 dbSNP
rs895190757 2158 dbSNP
rs1033750977 2163 dbSNP
rs147608984 2174 dbSNP
rs761958534 2175 dbSNP
rs1429013689 2176 dbSNP
rs969596956 2177 dbSNP
rs1199760194 2183 dbSNP
rs74759855 2184 dbSNP
rs1408840023 2186 dbSNP
rs1490729551 2186 dbSNP
rs368289614 2188 dbSNP
rs776661307 2191 dbSNP
rs1397409286 2195 dbSNP
rs903994968 2199 dbSNP
rs1259170166 2200 dbSNP
rs1328967251 2209 dbSNP
rs1042970838 2214 dbSNP
rs183893419 2215 dbSNP
rs902105699 2216 dbSNP
rs1040681024 2219 dbSNP
rs1485870033 2220 dbSNP
rs753371349 2221 dbSNP
rs746766435 2238 dbSNP
rs766494601 2239 dbSNP
rs1049476272 2243 dbSNP
rs542396951 2249 dbSNP
rs1042989933 2254 dbSNP
rs558839697 2256 dbSNP
rs779869172 2257 dbSNP
rs1472304663 2259 dbSNP
rs1180182882 2260 dbSNP
rs899686198 2263 dbSNP
rs771978389 2264 dbSNP
rs961242639 2274 dbSNP
rs190790523 2285 dbSNP
rs186267521 2292 dbSNP
rs1329114683 2294 dbSNP
rs1334862311 2297 dbSNP
rs959389516 2302 dbSNP
rs1294635543 2306 dbSNP
rs1355965821 2316 dbSNP
rs41273372 2329 dbSNP
rs1000937025 2340 dbSNP
rs919564083 2344 dbSNP
rs1341219215 2354 dbSNP
rs974370817 2377 dbSNP
rs968543070 2378 dbSNP
rs182153690 2380 dbSNP
rs1405861709 2381 dbSNP
rs1009732650 2385 dbSNP
rs1177629785 2390 dbSNP
rs1259740768 2397 dbSNP
rs1187466229 2400 dbSNP
rs1475793462 2400 dbSNP
rs190219056 2413 dbSNP
rs750260288 2420 dbSNP
rs902050065 2426 dbSNP
rs1476586464 2434 dbSNP
rs185358007 2439 dbSNP
rs1369518440 2440 dbSNP
rs1427452781 2445 dbSNP
rs1370987489 2461 dbSNP
rs1375532564 2477 dbSNP
rs992729968 2477 dbSNP
rs960822043 2479 dbSNP
rs1007840820 2483 dbSNP
rs546867625 2490 dbSNP
rs528732083 2496 dbSNP
rs889427484 2498 dbSNP
rs1328193131 2506 dbSNP
rs1192017306 2519 dbSNP
rs1227864014 2520 dbSNP
rs1269420508 2523 dbSNP
rs1031096048 2525 dbSNP
rs1428650966 2527 dbSNP
rs1263188252 2536 dbSNP
rs1486036649 2537 dbSNP
rs999578619 2542 dbSNP
rs181590675 2547 dbSNP
rs1254659693 2556 dbSNP
rs1449271976 2561 dbSNP
rs1194291386 2570 dbSNP
rs1049878672 2577 dbSNP
rs778478109 2592 dbSNP
rs1389968526 2608 dbSNP
rs968056066 2611 dbSNP
rs1175136960 2619 dbSNP
rs1395379259 2622 dbSNP
rs931037835 2627 dbSNP
rs1011518558 2641 dbSNP
rs919677147 2645 dbSNP
rs1387008630 2646 dbSNP
rs1036781638 2654 dbSNP
rs1382740673 2655 dbSNP
rs939840197 2659 dbSNP
rs1201732664 2662 dbSNP
rs1362788625 2663 dbSNP
rs1460837025 2670 dbSNP
rs1236303008 2671 dbSNP
rs1305880436 2675 dbSNP
rs899738003 2678 dbSNP
rs1348930548 2681 dbSNP
rs1232580919 2691 dbSNP
rs917778811 2696 dbSNP
rs140781395 2702 dbSNP
rs890923994 2705 dbSNP
rs959573256 2708 dbSNP
rs1247720753 2713 dbSNP
rs1046811473 2724 dbSNP
rs926608578 2727 dbSNP
rs1253219293 2730 dbSNP
rs1432281773 2740 dbSNP
rs1205350461 2741 dbSNP
rs1337129533 2747 dbSNP
rs1365056411 2760 dbSNP
rs979851859 2765 dbSNP
rs919627091 2766 dbSNP
rs1268710696 2780 dbSNP
rs1158343230 2789 dbSNP
rs1386432212 2790 dbSNP
rs866422782 2793 dbSNP
rs1038432458 2800 dbSNP
rs1326379074 2803 dbSNP
rs1368523581 2804 dbSNP
rs530892328 2809 dbSNP
rs1299207302 2812 dbSNP
rs1226952369 2817 dbSNP
rs1239944604 2819 dbSNP
rs1268040589 2823 dbSNP
rs1327768045 2825 dbSNP
rs1215911646 2833 dbSNP
rs1327152921 2834 dbSNP
rs563698657 2841 dbSNP
rs968111612 2847 dbSNP
rs36032422 2851 dbSNP
rs753397720 2856 dbSNP
rs1021046040 2858 dbSNP
rs1009677293 2859 dbSNP
rs12002133 2864 dbSNP
rs1450490689 2866 dbSNP
rs777238354 2868 dbSNP
rs1180887161 2870 dbSNP
rs960874097 2878 dbSNP
rs966184964 2905 dbSNP
rs755861207 2909 dbSNP
rs1349098794 2915 dbSNP
rs924079976 2916 dbSNP
rs542299224 2926 dbSNP
rs978192299 2927 dbSNP
rs1410495328 2940 dbSNP
rs968109254 2943 dbSNP
rs1022327851 2948 dbSNP
rs1235704032 2952 dbSNP
rs1290964313 2953 dbSNP
rs996576002 2957 dbSNP
rs1219914641 2959 dbSNP
rs1252678176 2961 dbSNP
rs751941216 2964 dbSNP
rs889369177 2968 dbSNP
rs190090718 2975 dbSNP
rs559840277 2984 dbSNP
rs1188569600 2988 dbSNP
rs995571529 2995 dbSNP
rs1374391576 3005 dbSNP
rs964702505 3013 dbSNP
rs1172336025 3014 dbSNP
rs1356468888 3016 dbSNP
rs1430685104 3018 dbSNP
rs1181235543 3019 dbSNP
rs1443422569 3038 dbSNP
rs898184919 3050 dbSNP
rs879274501 3051 dbSNP
rs540845698 3052 dbSNP
rs577136018 3053 dbSNP
rs1226932825 3063 dbSNP
rs939787786 3068 dbSNP
rs1046862555 3069 dbSNP
rs1227225886 3075 dbSNP
rs1271998147 3076 dbSNP
rs774899649 3079 dbSNP
rs1211048134 3081 dbSNP
rs1195487199 3084 dbSNP
rs896299904 3085 dbSNP
rs1482260398 3088 dbSNP
rs1056232992 3093 dbSNP
rs937911689 3094 dbSNP
rs1450262633 3096 dbSNP
rs577000217 3117 dbSNP
rs1388624692 3118 dbSNP
rs9774 3122 dbSNP
rs1436648724 3127 dbSNP
rs926527267 3132 dbSNP
rs1382117977 3133 dbSNP
rs979413665 3151 dbSNP
rs1290940255 3156 dbSNP
rs1366379140 3159 dbSNP
rs558394124 3170 dbSNP
rs913932103 3171 dbSNP
rs988192713 3174 dbSNP
rs1434910122 3175 dbSNP
rs767276832 3177 dbSNP
rs1349665110 3178 dbSNP
rs1450784606 3182 dbSNP
rs1334393125 3187 dbSNP
rs1277345182 3190 dbSNP
rs116410879 3191 dbSNP
rs1217880399 3194 dbSNP
rs1248341707 3200 dbSNP
rs1464272020 3201 dbSNP
rs1186507034 3202 dbSNP
rs1246389999 3204 dbSNP
rs1038080100 3205 dbSNP
rs1173183389 3206 dbSNP
rs1392276755 3209 dbSNP
rs1372041828 3210 dbSNP
rs1161216799 3211 dbSNP
rs763538993 3215 dbSNP
rs1385301726 3220 dbSNP
rs1413191869 3226 dbSNP
rs947716263 3242 dbSNP
rs916216188 3243 dbSNP
rs986710656 3245 dbSNP
rs953604924 3255 dbSNP
rs1165450632 3262 dbSNP
rs1028304565 3263 dbSNP
rs1372677049 3266 dbSNP
rs368693515 3280 dbSNP
rs1273678052 3286 dbSNP
rs1056746862 3290 dbSNP
rs1364882013 3290 dbSNP
rs1468510303 3290 dbSNP
rs1232194465 3291 dbSNP
rs1062898 3299 dbSNP
rs75204748 3306 dbSNP
rs898137946 3317 dbSNP
rs1015231904 3320 dbSNP
rs1003881460 3324 dbSNP
rs924132338 3331 dbSNP
rs978246189 3332 dbSNP
rs750830283 3335 dbSNP
rs968198235 3335 dbSNP
rs1254326721 3341 dbSNP
rs1220517871 3349 dbSNP
rs1358877784 3352 dbSNP
rs974819926 3356 dbSNP
rs1413298301 3366 dbSNP
rs1457208935 3371 dbSNP
rs965085755 3380 dbSNP
rs1397164395 3387 dbSNP
rs1405521650 3395 dbSNP
rs1292547024 3399 dbSNP
rs1056177843 3400 dbSNP
rs1443715568 3410 dbSNP
rs1288460683 3412 dbSNP
rs1018922289 3416 dbSNP
rs1230059315 3421 dbSNP
rs1292396612 3423 dbSNP
rs986703156 3433 dbSNP
rs1349185990 3440 dbSNP
rs1294827342 3449 dbSNP
rs148507929 3454 dbSNP
rs867455956 3472 dbSNP
rs993959672 3473 dbSNP
rs1352714035 3482 dbSNP
rs1450124592 3532 dbSNP
rs1207335037 3537 dbSNP
rs1252659455 3544 dbSNP
rs1472519753 3553 dbSNP
rs1180659685 3561 dbSNP
rs1370769426 3578 dbSNP
rs1300975122 3580 dbSNP
rs1163090523 3581 dbSNP
rs1403931332 3589 dbSNP
rs1411321253 3593 dbSNP
rs898291046 3596 dbSNP
rs1324992548 3604 dbSNP
rs1017104863 3605 dbSNP
rs905047097 3613 dbSNP
rs1398404327 3616 dbSNP
rs1314632031 3618 dbSNP
rs558797603 3620 dbSNP
rs1341042042 3630 dbSNP
rs1011971608 3631 dbSNP
rs894823891 3637 dbSNP
rs536283821 3643 dbSNP
rs1230905818 3646 dbSNP
rs565637364 3651 dbSNP
rs144863179 3655 dbSNP
rs939614696 3665 dbSNP
rs946665474 3666 dbSNP
rs1258848094 3683 dbSNP
rs534890805 3688 dbSNP
rs1187218971 3689 dbSNP
rs1197582019 3691 dbSNP
rs565627335 3692 dbSNP
rs1269805212 3712 dbSNP
rs988142091 3715 dbSNP
rs556 3717 dbSNP
rs112230287 3718 dbSNP
rs986271457 3720 dbSNP
rs953659243 3724 dbSNP
rs1027836730 3746 dbSNP
rs1331888776 3747 dbSNP
rs1284263327 3754 dbSNP
rs1327985013 3756 dbSNP
rs974039838 3760 dbSNP
rs1290191764 3762 dbSNP
rs1243194140 3780 dbSNP
rs761750365 3781 dbSNP
rs3177284 3782 dbSNP
rs1226239674 3788 dbSNP
rs3180437 3789 dbSNP
rs187198056 3791 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
     
Conditions Flp-In T-REx 293-hAGO1 cells
Location of target site CDS
Original Description (Extracted from the article) ... Validation of interactions identified by CLASH suppports their reliability. ...

- Helwak A; Kudla G; Dudnakova T; Tollervey D, 2013, Cell.

Article - Helwak A; Kudla G; Dudnakova T; Tollervey D
- Cell, 2013
MicroRNAs (miRNAs) play key roles in gene regulation, but reliable bioinformatic or experimental identification of their targets remains difficult. To provide an unbiased view of human miRNA targets, we developed a technique for ligation and sequencing of miRNA-target RNA duplexes associated with human AGO1. Here, we report data sets of more than 18,000 high-confidence miRNA-mRNA interactions. The binding of most miRNAs includes the 5' seed region, but around 60% of seed interactions are noncanonical, containing bulged or mismatched nucleotides. Moreover, seed interactions are generally accompanied by specific, nonseed base pairing. 18% of miRNA-mRNA interactions involve the miRNA 3' end, with little evidence for 5' contacts, and some of these were functionally validated. Analyses of miRNA:mRNA base pairing showed that miRNA species systematically differ in their target RNA interactions, and strongly overrepresented motifs were found in the interaction sites of several miRNAs. We speculate that these affect the response of RISC to miRNA-target binding.
LinkOut: [PMID: 23622248]
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
HNSC -0.347 0.01 -0.320 0.02 42 Click to see details
CESC 0.999 0.01 1.000 0.5 3 Click to see details
LUSC -0.263 0.06 -0.206 0.11 38 Click to see details
COAD 0.592 0.06 0.452 0.13 8 Click to see details
LIHC 0.211 0.07 0.216 0.07 49 Click to see details
PRAD 0.177 0.11 0.224 0.06 50 Click to see details
CHOL -0.406 0.14 -0.333 0.19 9 Click to see details
LUAD -0.334 0.14 -0.385 0.11 12 Click to see details
STAD -0.179 0.16 -0.169 0.18 32 Click to see details
THCA -0.125 0.17 -0.151 0.13 59 Click to see details
UCEC -0.213 0.19 -0.242 0.16 19 Click to see details
ESCA -0.155 0.32 -0.255 0.22 11 Click to see details
PCPG -0.511 0.33 -0.500 0.33 3 Click to see details
KICH -0.091 0.33 -0.081 0.35 25 Click to see details
KIRP -0.071 0.35 -0.185 0.16 32 Click to see details
KIRC -0.047 0.35 0.017 0.45 68 Click to see details
BLCA -0.061 0.4 -0.034 0.45 18 Click to see details
PAAD -0.079 0.46 0.400 0.3 4 Click to see details
BRCA -0.005 0.48 0.070 0.26 84 Click to see details
BRCA -0.005 0.48 0.070 0.26 84 Click to see details
BRCA -0.005 0.48 0.070 0.26 84 Click to see details
195 hsa-miR-1301-3p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT035957 MRPL10 mitochondrial ribosomal protein L10 1 1
MIRT035958 ZNF816 zinc finger protein 816 1 1
MIRT035959 HDLBP high density lipoprotein binding protein 1 1
MIRT035960 GNG10 G protein subunit gamma 10 1 1
MIRT035961 MICALL1 MICAL like 1 1 1
MIRT035962 CCNH cyclin H 1 1
MIRT035963 RAD23B RAD23 homolog B, nucleotide excision repair protein 1 1
MIRT035964 HIST2H2AC histone cluster 2 H2A family member c 1 1
MIRT035965 PARL presenilin associated rhomboid like 1 1
MIRT035966 TXN thioredoxin 1 1
MIRT035967 CREBBP CREB binding protein 1 1
MIRT035968 CYTB cytochrome b 1 1
MIRT035969 GLI3 GLI family zinc finger 3 1 1
MIRT035970 HMGCS1 3-hydroxy-3-methylglutaryl-CoA synthase 1 1 1
MIRT035971 PREP prolyl endopeptidase 1 1
MIRT035972 COL6A1 collagen type VI alpha 1 chain 1 1
MIRT035973 ATP5A1 ATP synthase, H+ transporting, mitochondrial F1 complex, alpha subunit 1, cardiac muscle 1 1
MIRT035974 ADCY3 adenylate cyclase 3 1 1
MIRT035975 POLB DNA polymerase beta 1 1
MIRT035976 HMGA1 high mobility group AT-hook 1 1 1
MIRT035977 SKP1 S-phase kinase associated protein 1 1 1
MIRT035978 ADD2 adducin 2 1 1
MIRT035979 ANXA11 annexin A11 1 1
MIRT035980 CORO1C coronin 1C 1 1
MIRT035981 MDH2 malate dehydrogenase 2 1 1
MIRT035982 BICD2 BICD cargo adaptor 2 1 1
MIRT035983 SPTBN1 spectrin beta, non-erythrocytic 1 1 1
MIRT035984 CDK5RAP2 CDK5 regulatory subunit associated protein 2 1 1
MIRT035985 POLR3H RNA polymerase III subunit H 1 1
MIRT035986 COX1 cytochrome c oxidase subunit I 1 1
MIRT035987 HEATR2 dynein axonemal assembly factor 5 1 1
MIRT035988 RPS5 ribosomal protein S5 1 1
MIRT035989 CCT3 chaperonin containing TCP1 subunit 3 1 1
MIRT035990 YWHAB tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein beta 1 1
MIRT035991 RPL3 ribosomal protein L3 1 1
MIRT035992 TMPO thymopoietin 1 1
MIRT035993 COPE coatomer protein complex subunit epsilon 1 1
MIRT035994 NONO non-POU domain containing octamer binding 1 1
MIRT035995 BLCAP bladder cancer associated protein 1 1
MIRT035996 NUP133 nucleoporin 133 1 1
MIRT035997 VCP valosin containing protein 1 1
MIRT035998 ARIH2 ariadne RBR E3 ubiquitin protein ligase 2 1 1
MIRT035999 SON SON DNA binding protein 1 1
MIRT036000 ATP5J ATP synthase, H+ transporting, mitochondrial Fo complex subunit F6 1 1
MIRT036001 VIM vimentin 1 1
MIRT036002 FKBP8 FK506 binding protein 8 1 1
MIRT036003 SPECC1L sperm antigen with calponin homology and coiled-coil domains 1 like 1 1
MIRT036004 ZCCHC14 zinc finger CCHC-type containing 14 1 1
MIRT036005 TXNL4A thioredoxin like 4A 1 1
MIRT036006 UBE2J2 ubiquitin conjugating enzyme E2 J2 1 1
MIRT036007 FOPNL FGFR1OP N-terminal like 1 1
MIRT036008 VDAC1 voltage dependent anion channel 1 1 1
MIRT036009 CDIP1 cell death inducing p53 target 1 1 1
MIRT036010 EBNA1BP2 EBNA1 binding protein 2 1 1
MIRT036011 CD276 CD276 molecule 1 1
MIRT036012 RPS2 ribosomal protein S2 1 1
MIRT036013 USP28 ubiquitin specific peptidase 28 1 1
MIRT036014 ZMIZ1 zinc finger MIZ-type containing 1 1 1
MIRT036015 B4GALT7 beta-1,4-galactosyltransferase 7 1 1
MIRT036016 CAND1 cullin associated and neddylation dissociated 1 1 1
MIRT036017 CCDC104 cilia and flagella associated protein 36 1 1
MIRT036018 IMPDH1 inosine monophosphate dehydrogenase 1 1 1
MIRT036019 ATXN2L ataxin 2 like 1 1
MIRT036020 PARP1 poly(ADP-ribose) polymerase 1 1 1
MIRT036021 TNXB tenascin XB 1 1
MIRT036022 SYNGR1 synaptogyrin 1 1 1
MIRT036023 TUT1 terminal uridylyl transferase 1, U6 snRNA-specific 1 1
MIRT036024 ATXN7L3B ataxin 7 like 3B 1 1
MIRT036025 BCL2L13 BCL2 like 13 1 1
MIRT036026 RBM42 RNA binding motif protein 42 1 1
MIRT036027 HDGF heparin binding growth factor 1 1
MIRT036028 NAT8L N-acetyltransferase 8 like 1 1
MIRT036029 DLST dihydrolipoamide S-succinyltransferase 1 1
MIRT036030 CEP104 centrosomal protein 104 1 1
MIRT036031 NCOR1 nuclear receptor corepressor 1 1 1
MIRT036032 COCH cochlin 1 1
MIRT036033 NUTF2 nuclear transport factor 2 1 1
MIRT036034 KMT2E lysine methyltransferase 2E 1 1
MIRT036035 RANGAP1 Ran GTPase activating protein 1 1 1
MIRT036036 SEPHS2 selenophosphate synthetase 2 1 1
MIRT036037 DYNC1I2 dynein cytoplasmic 1 intermediate chain 2 1 1
MIRT036038 ZCCHC24 zinc finger CCHC-type containing 24 1 1
MIRT036039 TRRAP transformation/transcription domain associated protein 1 1
MIRT036040 INPP4A inositol polyphosphate-4-phosphatase type I A 1 1
MIRT036041 CHN1 chimerin 1 1 1
MIRT036042 FECH ferrochelatase 1 1
MIRT036043 DCTD dCMP deaminase 1 1
MIRT036044 UBA1 ubiquitin like modifier activating enzyme 1 1 1
MIRT036045 PKM pyruvate kinase, muscle 1 1
MIRT036046 SSRP1 structure specific recognition protein 1 1 1
MIRT036047 CELF1 CUGBP Elav-like family member 1 1 1
MIRT036048 TSR2 TSR2, ribosome maturation factor 1 1
MIRT036049 TP53BP2 tumor protein p53 binding protein 2 1 1
MIRT036050 GSG2 histone H3 associated protein kinase 1 1
MIRT036051 WDFY1 WD repeat and FYVE domain containing 1 1 1
MIRT036052 RPA1 replication protein A1 1 1
MIRT036053 TMEM41A transmembrane protein 41A 1 1
MIRT036054 BIRC5 baculoviral IAP repeat containing 5 1 1
MIRT036055 NOP2 NOP2 nucleolar protein 1 1
MIRT036056 PEF1 penta-EF-hand domain containing 1 1 1
MIRT036057 CYB5D1 cytochrome b5 domain containing 1 1 1
MIRT036058 HIGD1A HIG1 hypoxia inducible domain family member 1A 1 1
MIRT036059 WDR61 WD repeat domain 61 1 1
MIRT036060 MINK1 misshapen like kinase 1 1 1
MIRT036061 RPL35A ribosomal protein L35a 1 1
MIRT036062 WNT3 Wnt family member 3 1 1
MIRT036063 SYNJ2 synaptojanin 2 1 1
MIRT036064 CFL1 cofilin 1 1 1
MIRT036065 ALDOA aldolase, fructose-bisphosphate A 1 1
MIRT036066 HIF1AN hypoxia inducible factor 1 alpha subunit inhibitor 1 1
MIRT064841 ZBTB18 zinc finger and BTB domain containing 18 2 4
MIRT090782 MBNL1 muscleblind like splicing regulator 1 2 2
MIRT163227 EDEM1 ER degradation enhancing alpha-mannosidase like protein 1 2 2
MIRT214143 LMNB1 lamin B1 2 2
MIRT291875 ZNF333 zinc finger protein 333 2 2
MIRT292477 ZNF507 zinc finger protein 507 2 2
MIRT306035 SKIL SKI like proto-oncogene 2 2
MIRT443004 TRIOBP TRIO and F-actin binding protein 2 2
MIRT457830 ITPRIP inositol 1,4,5-trisphosphate receptor interacting protein 2 2
MIRT460067 RFTN2 raftlin family member 2 2 2
MIRT460342 ARL14EP ADP ribosylation factor like GTPase 14 effector protein 2 2
MIRT463060 ZNF639 zinc finger protein 639 2 2
MIRT466204 TMED10 transmembrane p24 trafficking protein 10 2 2
MIRT476159 GOLGA8B golgin A8 family member B 2 2
MIRT486953 HLA-B major histocompatibility complex, class I, B 2 2
MIRT492391 SEMA6A semaphorin 6A 2 2
MIRT495050 CTRC chymotrypsin C 2 4
MIRT500010 ABCF2 ATP binding cassette subfamily F member 2 2 8
MIRT501565 PLEKHF2 pleckstrin homology and FYVE domain containing 2 2 4
MIRT502680 CSNK1G3 casein kinase 1 gamma 3 2 8
MIRT503058 CAB39 calcium binding protein 39 2 2
MIRT504615 PLK1 polo like kinase 1 2 2
MIRT505706 SESN2 sestrin 2 2 2
MIRT506197 PHF19 PHD finger protein 19 2 2
MIRT506821 KIF23 kinesin family member 23 2 6
MIRT513782 PAWR pro-apoptotic WT1 regulator 2 6
MIRT527011 MAGI2 membrane associated guanylate kinase, WW and PDZ domain containing 2 2 4
MIRT527806 KLRD1 killer cell lectin like receptor D1 2 2
MIRT537896 DYRK2 dual specificity tyrosine phosphorylation regulated kinase 2 2 4
MIRT537925 DST dystonin 2 2
MIRT540049 FOXC1 forkhead box C1 2 2
MIRT543395 DROSHA drosha ribonuclease III 2 2
MIRT545447 SC5D sterol-C5-desaturase 2 4
MIRT546876 RAB10 RAB10, member RAS oncogene family 2 4
MIRT549419 ACVR2B activin A receptor type 2B 2 2
MIRT551857 ASB6 ankyrin repeat and SOCS box containing 6 2 2
MIRT552453 ZNF410 zinc finger protein 410 2 2
MIRT552772 YIPF6 Yip1 domain family member 6 2 4
MIRT552788 YAF2 YY1 associated factor 2 2 2
MIRT554247 SLAIN2 SLAIN motif family member 2 2 2
MIRT554773 RHEBP1 RHEB pseudogene 1 2 4
MIRT555862 PAIP1 poly(A) binding protein interacting protein 1 2 2
MIRT556475 LIPA lipase A, lysosomal acid type 2 2
MIRT556655 KMT2D lysine methyltransferase 2D 2 4
MIRT558210 EFCAB14 EF-hand calcium binding domain 14 2 4
MIRT558306 DUSP14 dual specificity phosphatase 14 2 2
MIRT558818 CDCA4 cell division cycle associated 4 2 4
MIRT559370 ATP13A3 ATPase 13A3 2 2
MIRT559541 ARGLU1 arginine and glutamate rich 1 2 4
MIRT563022 ZNF680 zinc finger protein 680 2 2
MIRT563036 NBPF12 NBPF member 12 2 2
MIRT563791 SLC28A1 solute carrier family 28 member 1 2 2
MIRT565903 SCAMP2 secretory carrier membrane protein 2 2 2
MIRT566957 LBR lamin B receptor 2 2
MIRT567971 CPEB3 cytoplasmic polyadenylation element binding protein 3 2 2
MIRT570389 TSC22D2 TSC22 domain family member 2 2 2
MIRT575250 Timp3 tissue inhibitor of metalloproteinase 3 2 2
MIRT611519 ZNF25 zinc finger protein 25 2 2
MIRT611592 POTED POTE ankyrin domain family member D 2 2
MIRT614228 NPTXR neuronal pentraxin receptor 2 2
MIRT625933 SCYL3 SCY1 like pseudokinase 3 2 2
MIRT627320 TULP4 tubby like protein 4 2 2
MIRT631516 CTBS chitobiase 2 2
MIRT640705 MRS2 MRS2, magnesium transporter 2 2
MIRT642208 RUVBL2 RuvB like AAA ATPase 2 2 2
MIRT642767 FAM9C family with sequence similarity 9 member C 2 2
MIRT648411 KIAA0146 scaffolding protein involved in DNA repair 1 1
MIRT658045 FUT11 fucosyltransferase 11 2 2
MIRT663720 GLUL glutamate-ammonia ligase 2 2
MIRT698536 TFRC transferrin receptor 2 2
MIRT699988 RPS24 ribosomal protein S24 2 2
MIRT700433 PURB purine rich element binding protein B 2 2
MIRT705890 ADCY9 adenylate cyclase 9 2 2
MIRT706974 XPO5 exportin 5 2 2
MIRT710564 KIAA1958 KIAA1958 2 2
MIRT714070 RUNDC3B RUN domain containing 3B 2 2
MIRT716931 FAM13A family with sequence similarity 13 member A 2 2
MIRT717341 RAB40A RAB40A, member RAS oncogene family 2 2
MIRT717738 MYLK myosin light chain kinase 5 2
MIRT722963 SLC25A26 solute carrier family 25 member 26 2 2
MIRT723470 WIPF2 WAS/WASL interacting protein family member 2 2 2
MIRT732447 STAT3 signal transducer and activator of transcription 3 2 0
MIRT733631 SIRT1 sirtuin 1 3 0
MIRT733632 CCND1 cyclin D1 3 0
MIRT736012 RHEB Ras homolog, mTORC1 binding 3 0
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-mir-1301 Cisplatin 5460033 NSC119875 approved resistant High Gastric Cancer cell line (SGC-7901)
hsa-mir-1301 Cisplatin 5460033 NSC119875 approved resistant High Gastric Cancer cell line (BGC823)
hsa-mir-1301 Dabrafenib 44462760 NSC764134 approved resistant cell line (A375)
hsa-mir-1301 Paclitaxel 36314 NSC125973 approved sensitive cell line (W1)
hsa-mir-1301 Topotecan 60699 NSC609699 approved sensitive cell line (W1)
hsa-mir-1301 Androstenedione 6128 NSC9563 sensitive cell line (MCF-7)
hsa-mir-1301 Androstenedione+Letrozole sensitive cell line (MCF-7)
hsa-mir-1301 Cisplatin 5460033 NSC119875 approved sensitive cell line (BxPC3)
hsa-mir-1301 Cisplatin 5460033 NSC119875 approved resistant cell line (SGC-7901)
hsa-mir-1301 Cisplatin 5460033 NSC119875 approved resistant cell line (BGC-823)
hsa-miR-1301-3p Oxaliplatin 6857599 NSC266046 approved sensitive High Colorectal Cancer cell line (RKO)
hsa-miR-1301-3p Gemcitabine 60750 NSC613327 approved resistant High Pancreatic Cancer cell line (SW1990)
hsa-miR-1301-3p Gemcitabine 60750 NSC613327 approved sensitive High Pancreatic Cancer cell line (SW1990)
hsa-miR-1301-3p Plx-4720 24180719 NSC757438 sensitive High Thyroid Cancer cell line (8505c, BCPAP)
hsa-miR-1301-3p Imatinib 5291 NSC743414 approved sensitive Low Chronic Myelogenous Leukemia cell line (K562)
hsa-miR-1301-3p Cisplatin 5460033 NSC119875 approved sensitive High Pancreatic Cancer cell line (BxPC-3)
hsa-miR-1301-3p Dabrafenib 44462760 NSC764134 approved sensitive High Melanoma cell line (A375, IGR37, 501Mel)
hsa-miR-1301-3p Vemurafenib 42611257 NSC761431 approved sensitive High Melanoma cell line (A375, IGR37, 501Mel)
hsa-miR-1301-3p Cisplatin 5460033 NSC119875 approved resistant High Gastric Cancer tissue
hsa-miR-1301-3p Fluorouracil 3385 NSC19893 approved resistant High Gastric Cancer tissue
hsa-miR-1301-3p Trametinib 11707110 NSC758246 approved sensitive High Melanoma cell line (M14) (2uM)
hsa-miR-1301-3p Vemurafenib 42611257 NSC761431 approved sensitive High Melanoma cell line (M14) (50nM)
hsa-miR-1301-3p Vemurafenib 42611257 NSC761431 approved sensitive High Melanoma cell line (M14) (2uM)
hsa-miR-1301-3p Trametinib 11707110 NSC758246 approved sensitive High Melanoma cell line (M14) (50nM)
hsa-miR-1301-3p Epirubicin 41867 NSC256942 approved sensitive Low Osteosarcoma cell line (U-2-OS, SAOS-2)
hsa-miR-1301-3p Gemcitabine 60750 NSC613327 approved resistant High Pancreatic Cancer cell line (AsPC-1)
hsa-miR-1301-3p Cisplatin 5460033 NSC119875 approved resistant High Gastric Cancer cell line (SGC-7901, BGC-823)
hsa-miR-1301-3p Cisplatin 5460033 NSC119875 approved resistant High Ovarian Cancer cell line (A2780CP20)
hsa-miR-1301-3p Cisplatin 5460033 NSC119875 approved resistant High Non-Small Cell Lung Cancer cell line (A549)
hsa-miR-1301-3p Oxaliplatin 6857599 NSC266046 approved sensitive High Colorectal Cancer cell line (SW480, HCT-116)
hsa-miR-1301-3p Cisplatin 5460033 NSC119875 approved sensitive High Epithelial Ovarian Cancer cell line (SKOV3)
hsa-miR-1301-3p Gefitinib 123631 NSC715055 approved resistant cell line (HCC827)
hsa-miR-1301-3p Osimertinib 71496458 NSC779217 approved sensitive cell line (HCC827)
hsa-miR-1301-3p Vemurafenib 42611257 NSC761431 approved resistant cell line (451Lu)
hsa-miR-1301-3p Palbociclib 5330286 NSC758247 approved resistant tissue (breast cancer)
hsa-miR-1301-3p Cisplatin 5460033 NSC119875 approved sensitive cell line
hsa-miR-1301-3p Doxorubicin 31703 NSC123127 approved sensitive cell line (HS578T)
hsa-miR-1301-3p Cisplatin 5460033 NSC119875 approved resistant cell line (A549)
hsa-miR-1301-3p Tamoxifen+Fulvestrant resistant cell line (LCC9)
hsa-miR-1301-3p Cisplatin 5460033 NSC119875 approved resistant cell line (CP20)
hsa-miR-1301-3p Cisplatin 5460033 NSC119875 approved resistant cell line (CIS)
hsa-miR-1301-3p 4-Hydroxytamoxifen+Tamoxifen sensitive cell line (LY2)
hsa-miR-1301-3p Ethanol+Tamoxifen sensitive cell line (LY2)
hsa-miR-1301-3p Cisplatin 5460033 NSC119875 approved resistant cell line (RPMI2650)
hsa-miR-1301-3p Cisplatin 5460033 NSC119875 approved sensitive cell line (A549)

Error report submission