miRTarBase - #MIRT036263


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pre-miRNA Information
pre-miRNA hsa-mir-1229   
Genomic Coordinates chr5: 179798278 - 179798346
Synonyms MIRN1229, hsa-mir-1229, MIR1229
Description Homo sapiens miR-1229 stem-loop
Comment None
RNA Secondary Structure
Associated Diseases

Mature miRNA Information
Mature miRNA hsa-miR-1229-3p
Sequence 47| CUCUCACCACUGCCCUCCCACAG |69
Evidence Experimental
Experiments Cloned
DRVs in miRNA
Mutant ID Mutant Position Mutant Source
COSN20086841 1 COSMIC
COSN16303113 8 COSMIC
COSM6273761 14 COSMIC
COSM1066702 23 COSMIC
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs754734738 1 dbSNP
rs1479021409 8 dbSNP
rs200647784 9 dbSNP
rs1429872559 12 dbSNP
rs1373546432 13 dbSNP
rs766644214 15 dbSNP
rs758465824 18 dbSNP
rs1396376879 22 dbSNP
Putative Targets

miRNA Expression profile
Human miRNA Tissue Atlas
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol PBRM1   
Synonyms BAF180, PB1
Description polybromo 1
Transcript NM_018313   
Other Transcripts NM_181042   
Expression
Putative miRNA Targets on PBRM1
3'UTR of PBRM1
(miRNA target sites are highlighted)		 
>PBRM1|NM_018313|3'UTR
   1 TCACATCATTACGTTTCTTTTATATAGAAGCATAAAGAGTTGTGGATCAGTAGCCATTTTAGTTACTGGGGGTGGGGGGA
  81 AGGAACAAAGGAGGATAATTTTTATTGCATTTTACTGTACATCACAAGGCCATTTTTATATACGGACACTTTTAATAAGC
 161 TATTTCAATTTGTTTGTTATATTAAGTTGACTTTATCAAATACACAAAGATTTTTTTGCATATGTTTCCTTCGTTTAAAA
 241 CCAGTTTCATAATTGGTTGTATATGTAGACTTGGAGTTTTATCTTTTTACTTGTTGCCATGGAACTGAAACCATTAGAGG
 321 TTTTTGTCTTGGCTTGGGGTTTTTGTTTTCTTGGTTTTGGGTTTTTTTATATATATATATAAAAGAACAAAATGAAAAAA
 401 AACACACACACACAAGAGTTTACAGATTAGTTTAAATTGATAATGAAATGTGAAGTTTGTCCTAGTTTACATCTTAGAGA
 481 GGGGAGTATACTTGTGTTTGTTTCATGTGCCTGAATATCTTAAGCCACTTTCTGCAAAAGCTGTTTCTTACAGATGAAGT
 561 GCTTTCTTTGAAAGGTGGTTATTTAGGTTTTAGATGTTTAATAGACACAGCACATTTGCTCTATTAACTCAGAGGCTCAC
 641 TACAGAAATATGTAATCAGTGCTGTGCATCTGTCTGCAGCTAATGTACCTCCTGGACACCAGGAGGGGAAAAAGCACTTT
 721 TTCAATTGTGCTGAGTTAGACATCTGTGAGTTAGACTATGGTGTCAGTGATTTTTGCAGAACACGTGCACAACCCTGAGG
 801 TATGTTTAATCTAGGCAGGTACGTTTAAGGATATTTTGATCTATTTATAATGAATTCACAATTTATGCCTATAAATTTCA
 881 GATGATTTAAAATTTTAAACCTGTTACATTGAAAAACATTGAAGTTCGTCTTGAAGAAAGCATTAAGGTATGCATGGAGG
 961 TGATTTATTTTTAAACATAACACCTAACCTAACATGGGTAAGAGAGTATGGAACTAGATATGAGCTGTATAAGAAGCATA
1041 ATTGTGAACAAGTAGATTGATTGCCTTCATATACAAGTATGTTTTAGTATTCCTTATTTCCTTATTATCAGATGTATTTT
1121 TTCTTTTAAGTTTCAATGTTGTTATAATTCTCAACCAGAAATTTAATACTTTCTAAAATATTTTTTAAATTTAGCTTGTG
1201 CTTTTGAATTACAGGAGAAGGGAATCATAATTTAATAAAACGCTTACTAGAAAGACCATTACAGATCCCAAACACTTGGG
1281 TTTGGTGACCCTGTCTTTCTTATATGACCCTACAATAAACATTTGAAGGCAGCATAGGATGGCAGACAGTAGGAACATTG
1361 TTTCACTTGGCGGCATGTTTTTGAAACCTGCTTTATAGTAACTGGGTGATTGCCATTGTGGTAGAGCTTCCACTGCTGTT
1441 TATAATCTGAGAGAGTTAATCTCAGAGGATGCTTTTTTCCTTTTAATCTGCTATGAATCAGTACCCAGATGTTTAATTAC
1521 TGTACTTATTAAATCATGAGGGCAAAAGAGTGTAGAATGGAAAAAAGTCTCTTGTATCTAGATACTTTAAATATGGGAGG
1601 CCCTTTAACTTAATTGCCTTTAGTCAACCACTGGATTTGAATTTGCATCAAGTATTTTAAATAATATTGAATTTAAAAAA
1681 ATGTATTGCAGTAGTGTGTCAGTACCTTATTGTTAAAGTGAGTCAGATAAATCTTCAATTCCTGGCTATTTGGGCAATTG
1761 AATCATCATGGACTGTATAATGCAATCAGATTATTTTGTTTCTAGACATCCTTGAATTACACCAAAGAACATGAAATTTA
1841 GTTGTGGTTAAATTATTTATTTATTTCATGCATTCATTTTATTTCCCTTAAGGTCTGGATGAGACTTCTTTGGGGAGCCT
1921 CTAAAAAAATTTTTCACTGGGGGCCACGTGGGTCATTAGAAGCCAGAGCTCTCCTCCAGGCTCCTTCCCAGTGCCTAGAG
2001 GTGCTATAGGAAACATAGATCCAGCCAGGGGCTTCCCTAAAGCAGTGCAGCACCGGCCCAGGGCATCACTAGACAGGCCC
2081 TAATTAAGTTTTTTTTAAAAAGCCTGTGTATTTATTTTAGAATCATGTTTTTCTGTATATTAACTTGGGGGATATCGTTA
2161 ATATTTAGGATATAAGATTTGAGGTCAGCCATCTTCAAAAAAGAAAAAAAAATTGACTCAAGAAAGTACAAGTAAACTAT
2241 ACACCTTTTTTTCATAAGTTTTAGGAACTGTAGTAATGTGGCTTAGAAAGTATAATGGCCTAAATGTTTTCAAAATGTAA
2321 GTTCCTGTGGAGAAGAATTGTTTATATTGCAAACGGGGGGACTGAGGGGAACCTGTAGGTTTAAAACAGTATGTTTGTCA
2401 GCCAACTGATTTAAAAGGCCTTTAACTGTTTTGGTTGTTGTTTTTTTTTTAAGCCACTCTCCCCTTCCTATGAGGAAGAA
2481 TTGAGAGGGGCACCTATTTCTGTAAAATCCCCAAATTGGTGTTGATGATTTTGAGCTTGAATGTTTTCATACCTGATTAA
2561 AACTTGGTTTATTCTAATTTCTGTATCATATCATCTGAGGTTTACGTGGTAACTAGTCTTATAACATGTATGTATCTTTT
2641 TTTTGTTGTTCATCTAAAGCTTTTTAATCCAAATAAATACAGAGTTTGCAAAGTGATTTGGATTAACCAGGAAAAAAAAA
2721 AAAAAAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1 
miRNA  3' gacacccUCCCGUCACC-ACUCUc 5'
                 ||| |  ||| ||||| 
Target 5' tcccttaAGGTC--TGGATGAGAc 3'
 1884 - 1905 120.00 -9.00
2 
miRNA  3' gacacccucccGUCACCACUCUc 5'
                     ::| ||||:|: 
Target 5' attttagttacTGGGGGTGGGGg 3'
 56 - 78 112.00 -15.03
3 
miRNA  3' gacacccucccGUCACCACUCUc 5'
                     ||  ||| ||| 
Target 5' acctaacctaaCATGGGTAAGAg 3'
 982 - 1004 112.00 -9.80
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN31494546 6 COSMIC
COSN19706243 12 COSMIC
COSN31525945 17 COSMIC
COSN26988037 69 COSMIC
COSN20069015 74 COSMIC
COSN26988038 80 COSMIC
COSN31587088 143 COSMIC
COSN28187223 150 COSMIC
COSN30167339 168 COSMIC
COSN26711766 307 COSMIC
COSN23987468 382 COSMIC
COSN29586076 394 COSMIC
COSN22550907 425 COSMIC
COSN30163824 515 COSMIC
COSN229104 673 COSMIC
COSN5537246 898 COSMIC
COSN5537245 912 COSMIC
COSN16419363 1068 COSMIC
COSN23508505 1095 COSMIC
COSN31549911 1174 COSMIC
COSN19664188 1233 COSMIC
COSN31556157 1371 COSMIC
COSN31589934 1371 COSMIC
COSN31487389 1465 COSMIC
COSN32061689 1561 COSMIC
COSN31546609 1610 COSMIC
COSN22794391 1674 COSMIC
COSN6769996 1725 COSMIC
COSN30544479 1755 COSMIC
COSN31520402 1838 COSMIC
COSN31516164 1854 COSMIC
COSN31565605 1978 COSMIC
COSN31479877 2010 COSMIC
COSN32173812 2018 COSMIC
COSN31593952 2096 COSMIC
COSN5003403 2157 COSMIC
COSN29564590 2440 COSMIC
COSN15943482 2649 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs577666469 3 dbSNP
rs754305466 12 dbSNP
rs779338157 12 dbSNP
rs769014525 13 dbSNP
rs749644367 19 dbSNP
rs1403677986 21 dbSNP
rs947528401 22 dbSNP
rs1347776609 27 dbSNP
rs1231955116 30 dbSNP
rs915057168 32 dbSNP
rs1049526974 34 dbSNP
rs369288473 35 dbSNP
rs780357089 38 dbSNP
rs756420051 39 dbSNP
rs750732604 40 dbSNP
rs781417763 42 dbSNP
rs1428746412 46 dbSNP
rs757324961 50 dbSNP
rs1281309615 51 dbSNP
rs1235277080 63 dbSNP
rs1430629422 70 dbSNP
rs1482535546 73 dbSNP
rs1344016588 74 dbSNP
rs1156244857 78 dbSNP
rs1031052687 79 dbSNP
rs932499091 80 dbSNP
rs1410769421 93 dbSNP
rs1175384987 96 dbSNP
rs114861355 98 dbSNP
rs754458000 99 dbSNP
rs1450045282 107 dbSNP
rs1429504789 108 dbSNP
rs1175222024 113 dbSNP
rs1339825877 120 dbSNP
rs906532348 126 dbSNP
rs961329654 130 dbSNP
rs148181025 143 dbSNP
rs576788015 144 dbSNP
rs1275824380 153 dbSNP
rs1012105504 168 dbSNP
rs952466957 176 dbSNP
rs1022741070 179 dbSNP
rs1488280631 180 dbSNP
rs1246133340 182 dbSNP
rs895090915 183 dbSNP
rs1013062899 185 dbSNP
rs1324410591 186 dbSNP
rs1265818565 188 dbSNP
rs1475829846 195 dbSNP
rs960204836 195 dbSNP
rs763523284 196 dbSNP
rs760163573 199 dbSNP
rs1423403820 202 dbSNP
rs1037599234 205 dbSNP
rs143189756 206 dbSNP
rs907720092 207 dbSNP
rs999157829 210 dbSNP
rs555916669 224 dbSNP
rs1326808481 225 dbSNP
rs1047433237 232 dbSNP
rs757058134 233 dbSNP
rs536819406 255 dbSNP
rs1307955236 256 dbSNP
rs1353572618 261 dbSNP
rs1360430147 267 dbSNP
rs1215096822 276 dbSNP
rs1286715639 281 dbSNP
rs757512263 296 dbSNP
rs574070378 299 dbSNP
rs911449653 300 dbSNP
rs989741919 319 dbSNP
rs189527883 334 dbSNP
rs1050477518 336 dbSNP
rs1406141931 350 dbSNP
rs367997520 367 dbSNP
rs1437673436 368 dbSNP
rs1464224336 373 dbSNP
rs1160398010 380 dbSNP
rs1385651747 382 dbSNP
rs1404543671 382 dbSNP
rs1321383640 384 dbSNP
rs1031628107 385 dbSNP
rs1351232709 387 dbSNP
rs1441203257 387 dbSNP
rs1374436227 388 dbSNP
rs901044050 389 dbSNP
rs999609179 393 dbSNP
rs1427730587 394 dbSNP
rs1307815640 399 dbSNP
rs35127839 401 dbSNP
rs1024958380 402 dbSNP
rs1012178838 403 dbSNP
rs939979726 403 dbSNP
rs983782256 403 dbSNP
rs1288195560 405 dbSNP
rs930981718 410 dbSNP
rs1469958970 411 dbSNP
rs1491234094 415 dbSNP
rs201549104 415 dbSNP
rs745492792 415 dbSNP
rs764424896 416 dbSNP
rs1472453095 422 dbSNP
rs1037545993 424 dbSNP
rs1006096378 426 dbSNP
rs886269275 441 dbSNP
rs1330256124 452 dbSNP
rs1252130913 455 dbSNP
rs1227097297 459 dbSNP
rs551356489 471 dbSNP
rs933068676 477 dbSNP
rs1317665732 481 dbSNP
rs1447984513 490 dbSNP
rs1282719101 491 dbSNP
rs923035676 504 dbSNP
rs1038798519 506 dbSNP
rs942984413 509 dbSNP
rs1313649404 515 dbSNP
rs1393809284 519 dbSNP
rs914245424 531 dbSNP
rs1251358903 539 dbSNP
rs1298427362 549 dbSNP
rs1441727068 550 dbSNP
rs1461210423 550 dbSNP
rs989730545 551 dbSNP
rs149122651 556 dbSNP
rs1259606271 557 dbSNP
rs1475412146 565 dbSNP
rs1169751498 566 dbSNP
rs569119708 578 dbSNP
rs1463222798 585 dbSNP
rs1384540121 596 dbSNP
rs924121222 601 dbSNP
rs1420987233 611 dbSNP
rs774898080 617 dbSNP
rs771323226 621 dbSNP
rs548922908 623 dbSNP
rs990872297 643 dbSNP
rs3199918 644 dbSNP
rs1338641287 646 dbSNP
rs1016257733 651 dbSNP
rs1006084857 654 dbSNP
rs930928553 662 dbSNP
rs886382766 663 dbSNP
rs1359273421 664 dbSNP
rs1264228423 672 dbSNP
rs1485987658 675 dbSNP
rs915619507 676 dbSNP
rs1260804695 682 dbSNP
rs138125541 683 dbSNP
rs752941365 689 dbSNP
rs1193472462 699 dbSNP
rs1376772815 715 dbSNP
rs1307151994 716 dbSNP
rs1390448963 724 dbSNP
rs997732375 725 dbSNP
rs901687052 730 dbSNP
rs1175018045 731 dbSNP
rs1377772258 742 dbSNP
rs1038766278 745 dbSNP
rs1297925776 750 dbSNP
rs928778372 755 dbSNP
rs977587832 756 dbSNP
rs967957236 758 dbSNP
rs1330787571 760 dbSNP
rs1231134030 763 dbSNP
rs116832639 784 dbSNP
rs1425082184 790 dbSNP
rs990400079 793 dbSNP
rs748188889 795 dbSNP
rs1486717446 808 dbSNP
rs781418872 812 dbSNP
rs182419365 815 dbSNP
rs997536027 822 dbSNP
rs966132629 823 dbSNP
rs936922342 830 dbSNP
rs1395187864 838 dbSNP
rs924165658 843 dbSNP
rs978379734 850 dbSNP
rs1271332413 863 dbSNP
rs1344021183 865 dbSNP
rs949549570 868 dbSNP
rs1289871806 869 dbSNP
rs1004016985 871 dbSNP
rs1200541145 896 dbSNP
rs1490298315 901 dbSNP
rs918093682 907 dbSNP
rs564117455 916 dbSNP
rs1327931986 919 dbSNP
rs544212158 920 dbSNP
rs990860913 922 dbSNP
rs1288224560 927 dbSNP
rs959480912 928 dbSNP
rs1318698426 937 dbSNP
rs1352110126 941 dbSNP
rs1260798141 947 dbSNP
rs1239474214 948 dbSNP
rs1016203953 960 dbSNP
rs1055492979 966 dbSNP
rs1253013911 969 dbSNP
rs1456929847 973 dbSNP
rs1326574626 978 dbSNP
rs1284838237 980 dbSNP
rs190361309 983 dbSNP
rs1421424314 988 dbSNP
rs1405220544 994 dbSNP
rs984777506 997 dbSNP
rs369365079 998 dbSNP
rs1026472052 1000 dbSNP
rs1167354211 1007 dbSNP
rs755246306 1008 dbSNP
rs1446087871 1018 dbSNP
rs1321409571 1022 dbSNP
rs1383843399 1027 dbSNP
rs946232338 1038 dbSNP
rs1385581315 1059 dbSNP
rs1311659161 1060 dbSNP
rs1332425904 1065 dbSNP
rs1026617545 1068 dbSNP
rs1158006460 1069 dbSNP
rs997447282 1075 dbSNP
rs914774094 1085 dbSNP
rs901672695 1094 dbSNP
rs1017484918 1096 dbSNP
rs368347697 1109 dbSNP
rs990347349 1110 dbSNP
rs544071531 1111 dbSNP
rs563167528 1114 dbSNP
rs542855064 1116 dbSNP
rs574135134 1123 dbSNP
rs1455729704 1126 dbSNP
rs1431671871 1127 dbSNP
rs1178295326 1128 dbSNP
rs922203223 1136 dbSNP
rs1418817273 1145 dbSNP
rs1480263154 1145 dbSNP
rs1245335900 1152 dbSNP
rs554060991 1159 dbSNP
rs1195862766 1160 dbSNP
rs540372165 1163 dbSNP
rs1462378432 1168 dbSNP
rs1302175887 1170 dbSNP
rs966451205 1176 dbSNP
rs1293706185 1181 dbSNP
rs1339404264 1188 dbSNP
rs1207501160 1192 dbSNP
rs760074293 1212 dbSNP
rs1212449021 1214 dbSNP
rs1054224247 1216 dbSNP
rs1463135156 1219 dbSNP
rs1264510490 1223 dbSNP
rs1274430757 1235 dbSNP
rs1307553184 1239 dbSNP
rs879104853 1241 dbSNP
rs866341716 1242 dbSNP
rs1485004479 1244 dbSNP
rs1042994002 1250 dbSNP
rs562785230 1254 dbSNP
rs1477578615 1269 dbSNP
rs1229354922 1275 dbSNP
rs1326900824 1287 dbSNP
rs949700200 1289 dbSNP
rs1026849536 1299 dbSNP
rs918077086 1302 dbSNP
rs577691860 1315 dbSNP
rs1175518281 1322 dbSNP
rs1373502258 1323 dbSNP
rs1436542102 1324 dbSNP
rs1313196138 1329 dbSNP
rs990975440 1335 dbSNP
rs894373831 1340 dbSNP
rs557767550 1348 dbSNP
rs145484613 1359 dbSNP
rs1002503000 1360 dbSNP
rs1218108076 1365 dbSNP
rs984851640 1371 dbSNP
rs569081047 1372 dbSNP
rs751772585 1376 dbSNP
rs1213646723 1391 dbSNP
rs1281420418 1393 dbSNP
rs1214173134 1396 dbSNP
rs1446768309 1396 dbSNP
rs544207420 1400 dbSNP
rs950739443 1403 dbSNP
rs1469479027 1404 dbSNP
rs1423331436 1406 dbSNP
rs1169952316 1410 dbSNP
rs1475960000 1421 dbSNP
rs115339799 1426 dbSNP
rs75386783 1427 dbSNP
rs1174173946 1435 dbSNP
rs966019260 1435 dbSNP
rs1447038899 1438 dbSNP
rs1017432346 1445 dbSNP
rs564153590 1450 dbSNP
rs879404478 1451 dbSNP
rs765816163 1456 dbSNP
rs1032727532 1464 dbSNP
rs1323224886 1479 dbSNP
rs932166781 1479 dbSNP
rs753721342 1484 dbSNP
rs546813566 1488 dbSNP
rs879651890 1493 dbSNP
rs184467212 1500 dbSNP
rs1296666008 1501 dbSNP
rs966071499 1505 dbSNP
rs1226072476 1510 dbSNP
rs902843894 1513 dbSNP
rs1384993544 1527 dbSNP
rs1447735033 1539 dbSNP
rs1213318951 1543 dbSNP
rs1251433021 1544 dbSNP
rs1469876281 1548 dbSNP
rs907902259 1548 dbSNP
rs1194391207 1550 dbSNP
rs533094137 1552 dbSNP
rs570526599 1553 dbSNP
rs1357596693 1554 dbSNP
rs1468554658 1576 dbSNP
rs1160044791 1582 dbSNP
rs1408447394 1592 dbSNP
rs879598727 1601 dbSNP
rs1162325622 1603 dbSNP
rs1396305095 1609 dbSNP
rs545850698 1612 dbSNP
rs572206118 1614 dbSNP
rs952250778 1622 dbSNP
rs1330124281 1624 dbSNP
rs1335647196 1630 dbSNP
rs1027760118 1650 dbSNP
rs1410787834 1666 dbSNP
rs973867503 1667 dbSNP
rs1370322244 1674 dbSNP
rs1167175685 1675 dbSNP
rs1233129138 1675 dbSNP
rs1446901286 1680 dbSNP
rs548715456 1682 dbSNP
rs1014239223 1683 dbSNP
rs1003236069 1684 dbSNP
rs1472194827 1687 dbSNP
rs896764170 1700 dbSNP
rs550615927 1701 dbSNP
rs906853565 1702 dbSNP
rs140333240 1706 dbSNP
rs563047045 1710 dbSNP
rs760319168 1715 dbSNP
rs1020392234 1716 dbSNP
rs1419512423 1718 dbSNP
rs938150087 1723 dbSNP
rs543344546 1737 dbSNP
rs1049612020 1742 dbSNP
rs929442737 1748 dbSNP
rs1411211609 1751 dbSNP
rs554017225 1755 dbSNP
rs919240273 1758 dbSNP
rs1336913397 1770 dbSNP
rs1414528975 1776 dbSNP
rs976132697 1778 dbSNP
rs1357563171 1783 dbSNP
rs764051418 1785 dbSNP
rs932114865 1798 dbSNP
rs966052504 1805 dbSNP
rs900719953 1808 dbSNP
rs1337512630 1809 dbSNP
rs1361434869 1820 dbSNP
rs910444533 1832 dbSNP
rs1273590244 1833 dbSNP
rs1452728813 1846 dbSNP
rs1208417583 1850 dbSNP
rs1040623027 1867 dbSNP
rs986054841 1867 dbSNP
rs957152699 1869 dbSNP
rs1377034383 1872 dbSNP
rs1281403651 1887 dbSNP
rs1443197510 1895 dbSNP
rs1350106286 1900 dbSNP
rs1476091087 1904 dbSNP
rs78691006 1906 dbSNP
rs1426967986 1920 dbSNP
rs1366688871 1929 dbSNP
rs1434675257 1930 dbSNP
rs1311370245 1934 dbSNP
rs1377665699 1935 dbSNP
rs1164651447 1940 dbSNP
rs907853474 1943 dbSNP
rs1324944020 1944 dbSNP
rs1410982257 1944 dbSNP
rs555608104 1948 dbSNP
rs1270880614 1955 dbSNP
rs1346980295 1956 dbSNP
rs1470271915 1962 dbSNP
rs930644455 1981 dbSNP
rs967182631 1982 dbSNP
rs143667506 1989 dbSNP
rs1024370491 1990 dbSNP
rs1179688004 1995 dbSNP
rs375673530 1998 dbSNP
rs542109728 1999 dbSNP
rs557804466 2001 dbSNP
rs544709704 2003 dbSNP
rs920638908 2007 dbSNP
rs1013895630 2011 dbSNP
rs990942079 2014 dbSNP
rs894156754 2016 dbSNP
rs1319923804 2018 dbSNP
rs1454175041 2020 dbSNP
rs1055268280 2024 dbSNP
rs1002451032 2054 dbSNP
rs887940603 2055 dbSNP
rs1224419951 2057 dbSNP
rs1466843364 2060 dbSNP
rs1049260265 2061 dbSNP
rs767106356 2064 dbSNP
rs140938617 2078 dbSNP
rs1384141123 2079 dbSNP
rs575556401 2080 dbSNP
rs1407036575 2081 dbSNP
rs375198570 2082 dbSNP
rs1020211039 2096 dbSNP
rs1010285323 2097 dbSNP
rs1237999214 2097 dbSNP
rs1305498475 2097 dbSNP
rs1258777069 2101 dbSNP
rs1434944382 2102 dbSNP
rs1347472408 2104 dbSNP
rs1160579618 2111 dbSNP
rs1205366771 2118 dbSNP
rs555468287 2119 dbSNP
rs535789466 2121 dbSNP
rs1466746003 2124 dbSNP
rs1194994497 2129 dbSNP
rs566632929 2132 dbSNP
rs1457332014 2137 dbSNP
rs553220136 2138 dbSNP
rs1255415224 2144 dbSNP
rs539614637 2149 dbSNP
rs1434273455 2151 dbSNP
rs1410719072 2156 dbSNP
rs892809689 2157 dbSNP
rs1156468541 2161 dbSNP
rs1455732670 2164 dbSNP
rs1160183037 2168 dbSNP
rs1394077852 2172 dbSNP
rs1438777606 2185 dbSNP
rs1481245855 2196 dbSNP
rs1328033605 2203 dbSNP
rs1368168087 2203 dbSNP
rs1425601052 2205 dbSNP
rs1032721485 2213 dbSNP
rs1337295053 2213 dbSNP
rs574964096 2213 dbSNP
rs944656450 2215 dbSNP
rs1332284298 2216 dbSNP
rs1214957544 2217 dbSNP
rs1040967533 2220 dbSNP
rs1489061295 2220 dbSNP
rs1177127053 2225 dbSNP
rs1249122678 2231 dbSNP
rs1487431613 2239 dbSNP
rs910559190 2244 dbSNP
rs1216535157 2253 dbSNP
rs944911788 2254 dbSNP
rs1266366145 2256 dbSNP
rs1225570332 2257 dbSNP
rs1324628134 2258 dbSNP
rs1460101415 2276 dbSNP
rs1300944120 2287 dbSNP
rs1167114398 2291 dbSNP
rs570565009 2299 dbSNP
rs192017644 2313 dbSNP
rs1461595256 2317 dbSNP
rs1296379658 2319 dbSNP
rs1375494843 2323 dbSNP
rs1047978170 2327 dbSNP
rs1292468695 2333 dbSNP
rs1364644461 2344 dbSNP
rs187105369 2354 dbSNP
rs1234765295 2355 dbSNP
rs771216450 2359 dbSNP
rs925764747 2360 dbSNP
rs199630726 2361 dbSNP
rs550744388 2361 dbSNP
rs1250105416 2362 dbSNP
rs938098158 2364 dbSNP
rs72947557 2366 dbSNP
rs967632009 2374 dbSNP
rs1024027624 2378 dbSNP
rs1228690480 2379 dbSNP
rs1352027933 2388 dbSNP
rs992542544 2399 dbSNP
rs1427960949 2418 dbSNP
rs747979790 2420 dbSNP
rs547853091 2421 dbSNP
rs1168481793 2426 dbSNP
rs1470711768 2434 dbSNP
rs184063003 2436 dbSNP
rs1175025240 2441 dbSNP
rs191534841 2442 dbSNP
rs1373381182 2451 dbSNP
rs913103511 2451 dbSNP
rs1303039447 2461 dbSNP
rs1360906434 2489 dbSNP
rs1212247312 2490 dbSNP
rs1297141310 2491 dbSNP
rs1136585 2492 dbSNP
rs1344854873 2493 dbSNP
rs1002400174 2494 dbSNP
rs888055257 2509 dbSNP
rs575408918 2517 dbSNP
rs988729100 2518 dbSNP
rs1421438490 2521 dbSNP
rs1484892477 2530 dbSNP
rs1028340678 2534 dbSNP
rs1189110712 2535 dbSNP
rs1238247270 2547 dbSNP
rs546814777 2557 dbSNP
rs151026536 2571 dbSNP
rs1040421543 2575 dbSNP
rs1450235971 2588 dbSNP
rs564250466 2595 dbSNP
rs1393241203 2599 dbSNP
rs142790728 2605 dbSNP
rs575647383 2606 dbSNP
rs748636440 2610 dbSNP
rs371228805 2616 dbSNP
rs562141443 2622 dbSNP
rs1290058373 2628 dbSNP
rs761742533 2628 dbSNP
rs1441329401 2630 dbSNP
rs1439608550 2631 dbSNP
rs1303272627 2638 dbSNP
rs541823843 2642 dbSNP
rs1363645460 2645 dbSNP
rs370189453 2645 dbSNP
rs886648527 2645 dbSNP
rs1279815798 2648 dbSNP
rs1294689022 2651 dbSNP
rs1454135800 2652 dbSNP
rs573113588 2653 dbSNP
rs1213926037 2687 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
     
Conditions Flp-In T-REx 293-hAGO1 cells
Location of target site CDS
Original Description (Extracted from the article) ... Validation of interactions identified by CLASH suppports their reliability. ...

- Helwak A; Kudla G; Dudnakova T; Tollervey D, 2013, Cell.

Article - Helwak A; Kudla G; Dudnakova T; Tollervey D
- Cell, 2013
MicroRNAs (miRNAs) play key roles in gene regulation, but reliable bioinformatic or experimental identification of their targets remains difficult. To provide an unbiased view of human miRNA targets, we developed a technique for ligation and sequencing of miRNA-target RNA duplexes associated with human AGO1. Here, we report data sets of more than 18,000 high-confidence miRNA-mRNA interactions. The binding of most miRNAs includes the 5' seed region, but around 60% of seed interactions are noncanonical, containing bulged or mismatched nucleotides. Moreover, seed interactions are generally accompanied by specific, nonseed base pairing. 18% of miRNA-mRNA interactions involve the miRNA 3' end, with little evidence for 5' contacts, and some of these were functionally validated. Analyses of miRNA:mRNA base pairing showed that miRNA species systematically differ in their target RNA interactions, and strongly overrepresented motifs were found in the interaction sites of several miRNAs. We speculate that these affect the response of RISC to miRNA-target binding.
LinkOut: [PMID: 23622248]
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
GSE19350 CNS germ cell tumors 0.658 1.0e-2 0.512 4.4e-2 12 Click to see details
GSE21032 Prostate cancer -0.194 3.9e-2 -0.224 2.1e-2 83 Click to see details
GSE34608 Pulmonary tuberculosis and sarcoidosis 0.399 4.1e-2 0.405 3.8e-2 20 Click to see details
GSE38974 Chronic obstructive pulmonary disease -0.339 4.9e-2 -0.283 8.5e-2 25 Click to see details
GSE28260 Renal cortex and medulla 0.428 7.2e-2 0.533 3.0e-2 13 Click to see details
GSE21687 Ependynoma primary tumors -0.147 1.2e-1 -0.223 3.8e-2 64 Click to see details
GSE17498 Multiple myeloma 0.169 1.5e-1 0.042 4.0e-1 40 Click to see details
GSE19536 Breast cancer 0.102 1.6e-1 0.072 2.4e-1 100 Click to see details
GSE42095 Differentiated embryonic stem cells -0.174 2.1e-1 -0.208 1.7e-1 23 Click to see details
GSE26953 Aortic valvular endothelial cells -0.152 2.4e-1 -0.067 3.8e-1 24 Click to see details
GSE19783 ER- ER- breast cancer 0.066 2.8e-1 0.025 4.1e-1 79 Click to see details
GSE38226 Liver fibrosis -0.123 3.0e-1 -0.085 3.6e-1 21 Click to see details
GSE15076 Monocyte-derived dendritic cells 0.185 3.2e-1 0.133 3.7e-1 9 Click to see details
GSE28544 Breast cancer -0.093 3.3e-1 -0.041 4.2e-1 24 Click to see details
GSE14794 Lymphoblastoid cells 0.041 3.5e-1 0.035 3.7e-1 90 Click to see details
GSE32688 Pancreatic cancer -0.06 3.7e-1 0.041 4.1e-1 32 Click to see details
GSE19783 ER+ ER+ breast cancer 0.062 4.0e-1 -0.129 2.9e-1 20 Click to see details
GSE35602 Colorectal cancer stromal tissue 0.052 4.0e-1 0.002 5.0e-1 25 Click to see details
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
KIRC -0.458 0 -0.488 0 51 Click to see details
KIRP -0.586 0 -0.607 0 24 Click to see details
COAD 0.831 0.08 1.000 0.5 4 Click to see details
BRCA 0.178 0.13 0.236 0.07 42 Click to see details
CHOL 0.603 0.2 0.400 0.3 4 Click to see details
LUSC -0.163 0.24 -0.119 0.3 21 Click to see details
KICH 0.155 0.31 0.324 0.14 13 Click to see details
HNSC 0.181 0.31 0.091 0.4 10 Click to see details
UCEC 0.161 0.34 0.150 0.35 9 Click to see details
PRAD 0.209 0.37 0.300 0.31 5 Click to see details
LIHC -0.064 0.37 -0.128 0.25 30 Click to see details
PAAD 0.163 0.42 0.200 0.4 4 Click to see details
STAD -0.046 0.43 -0.315 0.12 16 Click to see details
BLCA -0.074 0.44 0.143 0.39 6 Click to see details
THCA 0.018 0.46 0.155 0.19 34 Click to see details
LUAD -0.024 0.49 0.000 0.5 4 Click to see details
LUAD -0.024 0.49 0.000 0.5 4 Click to see details
LUAD -0.024 0.49 0.000 0.5 4 Click to see details
LUAD -0.024 0.49 0.000 0.5 4 Click to see details
LUAD -0.024 0.49 0.000 0.5 4 Click to see details
LUAD -0.024 0.49 0.000 0.5 4 Click to see details
196 hsa-miR-1229-3p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT036258 VWA8 von Willebrand factor A domain containing 8 1 1
MIRT036259 SORBS3 sorbin and SH3 domain containing 3 1 1
MIRT036260 HIST1H3A histone cluster 1 H3 family member a 1 1
MIRT036261 TIA1 TIA1 cytotoxic granule associated RNA binding protein 1 1
MIRT036262 COIL coilin 1 1
MIRT036263 PBRM1 polybromo 1 1 1
MIRT036264 KRT28 keratin 28 1 1
MIRT036265 RPL7A ribosomal protein L7a 1 1
MIRT036266 EEF2 eukaryotic translation elongation factor 2 1 1
MIRT036267 CEP152 centrosomal protein 152 1 1
MIRT036268 CPT1B carnitine palmitoyltransferase 1B 1 1
MIRT036269 CEP55 centrosomal protein 55 1 1
MIRT036270 ZMYM2 zinc finger MYM-type containing 2 1 1
MIRT036271 CRISP3 cysteine rich secretory protein 3 1 1
MIRT036272 CDKN1A cyclin dependent kinase inhibitor 1A 1 1
MIRT036273 ADPRHL2 ADP-ribosylhydrolase like 2 1 1
MIRT036274 PHRF1 PHD and ring finger domains 1 1 1
MIRT036275 RPL3 ribosomal protein L3 1 1
MIRT036276 CSDE1 cold shock domain containing E1 1 1
MIRT036277 PTPRF protein tyrosine phosphatase, receptor type F 1 1
MIRT036278 ZNF264 zinc finger protein 264 1 1
MIRT036279 AHCYL1 adenosylhomocysteinase like 1 1 1
MIRT036280 GAPDH glyceraldehyde-3-phosphate dehydrogenase 1 1
MIRT036281 INTS10 integrator complex subunit 10 1 1
MIRT036282 TARDBP TAR DNA binding protein 1 1
MIRT036283 CTNND1 catenin delta 1 1 1
MIRT036284 KCTD15 potassium channel tetramerization domain containing 15 1 1
MIRT036285 CEP350 centrosomal protein 350 1 1
MIRT036286 C19orf10 myeloid derived growth factor 1 1
MIRT036287 TNRC6B trinucleotide repeat containing 6B 1 1
MIRT036288 CHCHD2 coiled-coil-helix-coiled-coil-helix domain containing 2 1 1
MIRT036289 POLR2D RNA polymerase II subunit D 1 1
MIRT036290 PHC1 polyhomeotic homolog 1 1 1
MIRT036291 HNRNPD heterogeneous nuclear ribonucleoprotein D 1 1
MIRT036292 OPA3 OPA3, outer mitochondrial membrane lipid metabolism regulator 1 1
MIRT036293 AIF1L allograft inflammatory factor 1 like 1 1
MIRT036294 NEU3 neuraminidase 3 1 1
MIRT036295 DCTD dCMP deaminase 1 1
MIRT036296 TUBA1B tubulin alpha 1b 1 1
MIRT036297 HADHB hydroxyacyl-CoA dehydrogenase/3-ketoacyl-CoA thiolase/enoyl-CoA hydratase (trifunctional protein), beta subunit 1 1
MIRT036298 ACOT7 acyl-CoA thioesterase 7 1 1
MIRT036299 MDK midkine 1 1
MIRT036300 INO80D INO80 complex subunit D 1 1
MIRT036301 LDOC1L retrotransposon Gag like 6 1 1
MIRT036302 C2orf44 WD repeat and coiled coil containing 1 1
MIRT036303 SRCAP Snf2 related CREBBP activator protein 1 1
MIRT036304 EPB41L2 erythrocyte membrane protein band 4.1 like 2 1 1
MIRT036305 REXO2 RNA exonuclease 2 1 1
MIRT036306 CTNNBL1 catenin beta like 1 1 1
MIRT036307 SAFB scaffold attachment factor B 1 1
MIRT036308 PPP6R1 protein phosphatase 6 regulatory subunit 1 1 1
MIRT036309 FEN1 flap structure-specific endonuclease 1 1 1
MIRT036310 LRBA LPS responsive beige-like anchor protein 1 1
MIRT036311 SCAMP5 secretory carrier membrane protein 5 1 1
MIRT036312 DAG1 dystroglycan 1 1 1
MIRT036313 HYPK huntingtin interacting protein K 1 1
MIRT036314 HIST1H4C histone cluster 1 H4 family member c 1 1
MIRT036315 CDC42EP4 CDC42 effector protein 4 1 1
MIRT036316 ERC1 ELKS/RAB6-interacting/CAST family member 1 1 1
MIRT036317 GTF2I general transcription factor IIi 1 1
MIRT036318 RPGRIP1L RPGRIP1 like 1 1
MIRT036319 ATP5A1 ATP synthase, H+ transporting, mitochondrial F1 complex, alpha subunit 1, cardiac muscle 1 1
MIRT036320 TRRAP transformation/transcription domain associated protein 1 1
MIRT036321 PHF8 PHD finger protein 8 1 1
MIRT036322 TSC22D3 TSC22 domain family member 3 1 1
MIRT036323 MPP2 membrane palmitoylated protein 2 1 1
MIRT036324 NAA50 N(alpha)-acetyltransferase 50, NatE catalytic subunit 1 1
MIRT036325 ALS2 ALS2, alsin Rho guanine nucleotide exchange factor 1 1
MIRT036326 KMT2D lysine methyltransferase 2D 1 1
MIRT036327 ITGA5 integrin subunit alpha 5 1 1
MIRT036328 ABCC5 ATP binding cassette subfamily C member 5 1 1
MIRT036329 KIF24 kinesin family member 24 1 1
MIRT036330 PPP4C protein phosphatase 4 catalytic subunit 1 1
MIRT036331 FMNL2 formin like 2 1 1
MIRT036332 NF2 neurofibromin 2 1 1
MIRT036333 NUP210 nucleoporin 210 1 1
MIRT036334 CTDNEP1 CTD nuclear envelope phosphatase 1 1 1
MIRT036335 EIF4G2 eukaryotic translation initiation factor 4 gamma 2 1 1
MIRT036336 CTCF CCCTC-binding factor 1 1
MIRT036337 LRIT1 leucine rich repeat, Ig-like and transmembrane domains 1 1 1
MIRT036338 SFPQ splicing factor proline and glutamine rich 1 1
MIRT036339 CDIPT CDP-diacylglycerol--inositol 3-phosphatidyltransferase 1 1
MIRT036340 NAPEPLD N-acyl phosphatidylethanolamine phospholipase D 1 1
MIRT036341 SLC39A7 solute carrier family 39 member 7 1 1
MIRT036342 KDM5C lysine demethylase 5C 1 1
MIRT036343 ACLY ATP citrate lyase 1 1
MIRT036344 MED19 mediator complex subunit 19 1 1
MIRT036345 SRP72 signal recognition particle 72 1 1
MIRT036346 RUVBL2 RuvB like AAA ATPase 2 1 1
MIRT036347 CLSTN3 calsyntenin 3 1 1
MIRT036348 SAE1 SUMO1 activating enzyme subunit 1 1 1
MIRT036349 TUBG1 tubulin gamma 1 1 1
MIRT036350 FOXP1 forkhead box P1 1 1
MIRT036351 ZNF687 zinc finger protein 687 1 1
MIRT036352 HNRNPUL1 heterogeneous nuclear ribonucleoprotein U like 1 1 1
MIRT036353 HNRNPA3 heterogeneous nuclear ribonucleoprotein A3 1 1
MIRT036354 RNF40 ring finger protein 40 1 1
MIRT036355 KPNB1 karyopherin subunit beta 1 1 1
MIRT036356 HNRNPA1 heterogeneous nuclear ribonucleoprotein A1 1 1
MIRT036357 DDX23 DEAD-box helicase 23 1 1
MIRT036358 BET1L Bet1 golgi vesicular membrane trafficking protein like 1 1
MIRT036359 BRD2 bromodomain containing 2 1 1
MIRT036360 EML1 echinoderm microtubule associated protein like 1 1 1
MIRT036361 BAP1 BRCA1 associated protein 1 1 1
MIRT036362 STAT5B signal transducer and activator of transcription 5B 1 1
MIRT036363 SUPT5H SPT5 homolog, DSIF elongation factor subunit 1 1
MIRT036364 GPI glucose-6-phosphate isomerase 1 1
MIRT036365 PTBP3 polypyrimidine tract binding protein 3 1 1
MIRT036366 RPS15 ribosomal protein S15 1 1
MIRT036367 ZDHHC7 zinc finger DHHC-type containing 7 1 1
MIRT036368 ARL6IP1 ADP ribosylation factor like GTPase 6 interacting protein 1 1 1
MIRT036369 SNX12 sorting nexin 12 1 1
MIRT036370 OTUD7B OTU deubiquitinase 7B 1 1
MIRT036371 AP2M1 adaptor related protein complex 2 mu 1 subunit 1 1
MIRT036372 C9orf114 SPOUT domain containing methyltransferase 1 1 1
MIRT036373 MAPKAPK2 mitogen-activated protein kinase-activated protein kinase 2 1 1
MIRT036374 FOXK1 forkhead box K1 1 1
MIRT036375 SIK2 salt inducible kinase 2 1 1
MIRT036376 SCD stearoyl-CoA desaturase 1 1
MIRT036377 PHGDH phosphoglycerate dehydrogenase 1 1
MIRT036378 PITPNB phosphatidylinositol transfer protein beta 1 1
MIRT036379 MAD2L2 mitotic arrest deficient 2 like 2 1 1
MIRT036380 TUSC3 tumor suppressor candidate 3 1 1
MIRT036381 PRKRIP1 PRKR interacting protein 1 1 1
MIRT036382 DCAF7 DDB1 and CUL4 associated factor 7 1 1
MIRT036383 NME2 NME/NM23 nucleoside diphosphate kinase 2 1 1
MIRT036384 YWHAZ tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein zeta 1 1
MIRT036385 SLC16A13 solute carrier family 16 member 13 1 1
MIRT036386 PRDX4 peroxiredoxin 4 1 1
MIRT036387 NXPE3 neurexophilin and PC-esterase domain family member 3 1 1
MIRT036388 IGF2BP1 insulin like growth factor 2 mRNA binding protein 1 1 1
MIRT036389 CPNE1 copine 1 1 1
MIRT036390 PSMC5 proteasome 26S subunit, ATPase 5 1 1
MIRT036391 PAK4 p21 (RAC1) activated kinase 4 1 1
MIRT059262 CELF1 CUGBP Elav-like family member 1 2 2
MIRT061283 IPO7 importin 7 2 2
MIRT080097 IER3IP1 immediate early response 3 interacting protein 1 2 2
MIRT345981 BIRC5 baculoviral IAP repeat containing 5 2 8
MIRT366471 KLHL15 kelch like family member 15 2 2
MIRT379534 HNRNPK heterogeneous nuclear ribonucleoprotein K 2 2
MIRT443697 HUNK hormonally up-regulated Neu-associated kinase 2 4
MIRT472347 NETO2 neuropilin and tolloid like 2 2 2
MIRT497842 GATA6 GATA binding protein 6 2 4
MIRT510408 ZNF268 zinc finger protein 268 2 4
MIRT519621 ZNF781 zinc finger protein 781 2 2
MIRT519830 ZFP69B ZFP69 zinc finger protein B 2 4
MIRT530712 ORMDL3 ORMDL sphingolipid biosynthesis regulator 3 2 2
MIRT530802 GPR182 G protein-coupled receptor 182 2 2
MIRT534374 SETD7 SET domain containing lysine methyltransferase 7 2 2
MIRT535541 P2RY2 purinergic receptor P2Y2 2 2
MIRT536016 MCUR1 mitochondrial calcium uniporter regulator 1 2 2
MIRT556019 MYBL1 MYB proto-oncogene like 1 2 2
MIRT560009 ZNF525 zinc finger protein 525 2 2
MIRT560072 ZNF195 zinc finger protein 195 2 2
MIRT565948 RRAGD Ras related GTP binding D 2 2
MIRT570131 IL1RL2 interleukin 1 receptor like 2 2 2
MIRT570887 ZNF780A zinc finger protein 780A 2 4
MIRT609775 VWC2L von Willebrand factor C domain containing protein 2 like 2 4
MIRT611445 NRIP3 nuclear receptor interacting protein 3 2 2
MIRT611975 ZNF175 zinc finger protein 175 2 2
MIRT612871 IGFBP5 insulin like growth factor binding protein 5 2 4
MIRT613012 GABPB1 GA binding protein transcription factor beta subunit 1 2 4
MIRT617515 PTDSS1 phosphatidylserine synthase 1 2 2
MIRT636095 ZDHHC22 zinc finger DHHC-type containing 22 2 2
MIRT637442 ZNF324B zinc finger protein 324B 2 2
MIRT638303 SCO1 SCO1, cytochrome c oxidase assembly protein 2 2
MIRT638920 CALCOCO2 calcium binding and coiled-coil domain 2 2 2
MIRT640590 TM9SF4 transmembrane 9 superfamily member 4 2 2
MIRT646760 WDR3 WD repeat domain 3 2 2
MIRT652591 TIMM8A translocase of inner mitochondrial membrane 8A 2 2
MIRT654866 PPL periplakin 2 2
MIRT654952 PMEPA1 prostate transmembrane protein, androgen induced 1 2 2
MIRT656021 MYO5B myosin VB 2 2
MIRT657078 JMY junction mediating and regulatory protein, p53 cofactor 2 2
MIRT657880 GFPT1 glutamine--fructose-6-phosphate transaminase 1 2 2
MIRT659231 CXCR5 C-X-C motif chemokine receptor 5 2 2
MIRT662904 MED18 mediator complex subunit 18 2 2
MIRT685610 C12orf49 chromosome 12 open reading frame 49 2 2
MIRT687424 NRIP1 nuclear receptor interacting protein 1 2 2
MIRT692293 CNNM3 cyclin and CBS domain divalent metal cation transport mediator 3 2 2
MIRT693749 ZNF383 zinc finger protein 383 2 2
MIRT695121 PRY2 PTPN13-like, Y-linked 2 2 2
MIRT695138 PRY PTPN13-like, Y-linked 2 2
MIRT709581 LETMD1 LETM1 domain containing 1 2 2
MIRT709737 TRIM27 tripartite motif containing 27 2 2
MIRT711058 UGT2B4 UDP glucuronosyltransferase family 2 member B4 2 2
MIRT714189 TRAF7 TNF receptor associated factor 7 2 2
MIRT715924 CHD4 chromodomain helicase DNA binding protein 4 2 2
MIRT719463 SRF serum response factor 2 2
MIRT720172 PANK2 pantothenate kinase 2 2 2
MIRT720456 RAB31 RAB31, member RAS oncogene family 2 2
MIRT721642 ZNF207 zinc finger protein 207 2 2
MIRT721996 CLLU1OS chronic lymphocytic leukemia up-regulated 1 opposite strand 2 2
MIRT722187 DNAJC9 DnaJ heat shock protein family (Hsp40) member C9 2 2
MIRT725196 PTRF caveolae associated protein 1 2 2
MIRT725518 FAM229B family with sequence similarity 229 member B 2 2
miRNA-Drug Associations
miRNA Small Melocule FDA CID Detection Method Condition PMID Year Expression Pattern of miRNA
miR-1229 Progesterone approved 5994 Microarray Breast cancer 22330642 2012 down-regulated
miR-1229 5-Fluorouracil approved 3385 Microarray CNE cells 22614822 2012 up-regulated
miR-1229 Goserelin approved 47725 Microarray prostate 22674191 2012 up-regulated
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-mir-1229 Fluorouracil 3385 NSC19893 approved sensitive cell line (KYSE)
hsa-miR-1229-3p Cisplatin 5460033 NSC119875 approved sensitive High Gastric Cancer cell line (SGC7901)
hsa-miR-1229-3p Doxorubicin 31703 NSC123127 approved sensitive High Gastric Cancer cell line (SGC7901)
hsa-miR-1229-3p Fluorouracil 3385 NSC19893 approved sensitive High Gastric Cancer cell line (SGC7901)
hsa-miR-1229-3p Vincristine 5978 approved sensitive High Gastric Cancer cell line (SGC7901)
hsa-miR-1229-3p Oxaliplatin 6857599 NSC266046 approved sensitive High Colorectal Cancer cell line (HCT-116)
hsa-miR-1229-3p Oxaliplatin 6857599 NSC266046 approved resistant High Colorectal Cancer cell line (HT-29)
hsa-miR-1229-3p Sorafenib 216239 NSC747971 approved sensitive High Hepatocellular Carcinoma cell line (Huh-7, PLC)
hsa-miR-1229-3p Trametinib 11707110 NSC758246 approved resistant High Melanoma cell line (WM266) (1uM)
hsa-miR-1229-3p Vemurafenib 42611257 NSC761431 approved resistant High Melanoma cell line (WM266) (1uM)
hsa-miR-1229-3p Fluorouracil 3385 NSC19893 approved resistant Low Gastric Cancer cell line (HGC-27, GFP-MKN45)
hsa-miR-1229-3p Sorafenib 216239 NSC747971 approved sensitive High Hepatocellular Carcinoma cell line (Huh-7, PLC)
hsa-miR-1229-3p Temozolomide 5394 NSC362856 approved resistant cell line (U251)
hsa-miR-1229-3p Osimertinib 71496458 NSC779217 approved resistant cell line (HCC827)
hsa-miR-1229-3p Osimertinib 71496458 NSC779217 approved resistant cell line (PC9)
hsa-miR-1229-3p Vemurafenib 42611257 NSC761431 approved resistant cell line (451Lu)
hsa-miR-1229-3p Cisplatin 5460033 NSC119875 approved resistant cell line (A549)
hsa-miR-1229-3p Tamoxifen 2733525 NSC180973 approved sensitive cell line (LCC2)
hsa-miR-1229-3p Gemcitabine 60750 NSC613327 approved resistant cell line (MDA-231)
hsa-miR-1229-3p Cisplatin 5460033 NSC119875 approved sensitive cell line (A549)
hsa-miR-1229-3p Gemcitabine 60750 NSC613327 approved resistant cell line (PANC-1) (1500 ng/ml)

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