pre-miRNA Information
pre-miRNA hsa-mir-744   
Genomic Coordinates chr17: 12081899 - 12081996
Synonyms MIRN744, hsa-mir-744, MIR744
Description Homo sapiens miR-744 stem-loop
Comment This sequence was identified as a miRNA candidate by Berezikov et al. using RAKE and MPSS techniques .
RNA Secondary Structure
Associated Diseases

Mature miRNA Information
Mature miRNA hsa-miR-744-5p
Sequence 11| UGCGGGGCUAGGGCUAACAGCA |32
Evidence Experimental
Experiments Cloned
DRVs in miRNA
Mutant ID Mutant Position Mutant Source
COSN23015028 1 COSMIC
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs557969425 1 dbSNP
rs748252260 4 dbSNP
rs1470408501 7 dbSNP
rs1178657616 10 dbSNP
Putative Targets

miRNA Expression profile
Human miRNA Tissue Atlas
miRNAs in Extracellular Vesicles
Circulating MicroRNA Expression Profiling
Biomarker Information
Biomarker ID Name Type Discovered From Mode Level Source Testing Methods
B6B8SM miR-744-5p Safety Biomarker (SAF) Clinical/Experimental Data Expression Increase Urine Real-time polymerase chain reaction
Gene Information
Gene Symbol PDE4A   
Synonyms DPDE2, PDE4, PDE46
Description phosphodiesterase 4A
Transcript NM_001111307   
Other Transcripts NM_001111308 , NM_001111309 , NM_006202   
Expression
Putative miRNA Targets on PDE4A
3'UTR of PDE4A
(miRNA target sites are highlighted)
>PDE4A|NM_001111307|3'UTR
   1 TCCCCAGACCTCTGTCCCTGTTCCCCTCCACTCCTCCCCTCACTCCCCTGCTCCCCCGACCACCTCCTCCTCTGCCTCAA
  81 AGACTCTTGTCCTCTTGTCCCTCCTGAGAAAAAAGAAAACGAAAAGTGGGGTTTTTTTCTGTTTTCTTTTTTTCCCCTTT
 161 CCCCCTGCCCCCACCCACGGGGCCTTTTTTTGGAGGTGGGGGCTGGGGAATGAGGGGCTGAGGTCCCGGAAGGGATTTTA
 241 TTTTTTTGAATTTTAATTGTAACATTTTTAGAAAAAGAACAAAAAAAGAAAAAAAAAAGAAAGAAACACAGCAACTGTAG
 321 ATGCTCCTGTTCCTGGTTCCCGCTTTCCACTTCCAAATCCCTCCCCTCACCTTCCCCCACTGCCCCCCAAGTTCCAGGCT
 401 CAGTCTTCCAGCCGCCTGGGGAGTCTCTACCTGGGCCCAAGCAGGTGTGGGGCCTCCTTCTGGGCTTTTCTTCTGAATTT
 481 AGAGGATTTCTAGAACGTGGTCAGGAATAGCCATTCTAGGCGGGGCTGGGGCCAGGGTGGGGGGCAGTCACTGTGGGAGG
 561 TCCCAGCTCCAGCCCCCCTCTGGTTTGCTGCCTCCTCTCCCCTCTAAAAAAGTCTTCCGCTTGATTTTGCACAATCCCGG
 641 CGATACTCCTGGCGATACTGACTAGAAAGTCAGGGAGCTGGGGGAGCTGTTCACTTTAGGATACGGGGGTGGTATGGAAG
 721 GGAGCGTTCACACCGCCAGCCTCGGGCCTGGGATTTGAGGAGGGCCCTAGACCTCCTCCACTCTCCATCCCCTTTCCCTT
 801 CCACTTTGGGTTCACTTTGAATTTTCTCCGTTTTTTGGGGCAGTGGCTCTGATCCACTCACCCCCCCGCCCCCCGCCCCA
 881 CTTCTAGCTGCTTCTCCTCTTGTTTCTGCCTTAATAATTCCCACGGCCACAGGCAAGGGGGTTGCAGTGGCCGCCTGCAC
 961 CTTGGATGAGGCAGGGCCAGGCGCCCAGAACCCCCATCCTGGCCGCACCCCCCTTTCCAGGGTCCTCCGGACCCCACCTT
1041 CCACACTCTGATCACAGCCCCCCTACCTTTTGCCCTAGGAGGAAGCAATAATGGTGTATACCCTCATTCTCATTCCTGGG
1121 CAGCCCTTCCTTCCACCCTGGCACCAAAATAATTTCTCCTCCATCCGTACCTTGCCTAGCCTCTCCCTCTCCCCCAGCTA
1201 GTCCCTGAGCAATACGGCAGACAGATGCAAGACCATTTTTCTCCAAGCCATGGGGGACTGTTTGGAAGGAAAGCCCCCTC
1281 TCTCCCTCCTCCCCTCGCCCTCGGCCTGGTTCTGCAGCTGGACCGACCTCATTCATCGCCTGCCCCCTACCCAATTCTGA
1361 GCACACGGTACTGTAGCCCCCAGTTCCTCCCTAGCCTTCCATCCCTCTGTCCACCCCAGGGGGAGGTAACCCCGCACTCA
1441 CACTCCCTTGATGCTGTCTGTACAGGGTTCATATTTTGTAGCGAAAGTCGTTTTTGTCCCAGCCGGCGATCGGAGTGGGC
1521 CTTTTCTTTCTTTTTGTTCATTCTTTACCTTTTTTTCTTTTCTTTCTTTCTTTTTTGTACATACTGTAAGGTTGGTTTGT
1601 AAATTATTCTACGGAGGCAAAAAGGGAAAATAAAAACTTGCCCTTCCCTGGCTGACCCAGTCGGGAAGGTAGGGAAGGAG
1681 GTCTCCCGTTGGGAGAGTCTCTGTTCCTGCTGTATTATACAAACTGTACCATAGTCCTGGGAAAAGGGTGGACTCACCGC
1761 TGTTGTTTTATGGGAAGTCGTGTCATCCTAGGGGTTGGGGCTGGGCAGAGCCTGTCCCCTCCCCCCTTCTCCAGGAGCCA
1841 GGGGGTGACTGGAGAGACAGACCCACCCCCAAGCAGGGCTCCTCTCCCCAGGGTGAGCACAGGACCTCTGTAAGCTGCTT
1921 GTGTATTGTCCACTTTGACGATCAGTCATTCGGTCCGTTGATCAATAATCCTTCGATCTTGTCTCCAATTAAACCGAGGC
2001 TTTCACCGATAAAAAAAAAAAAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' acgacaaUCGGGAUCGGGGCGu 5'
                 |||:| |||||| | 
Target 5' aggtcccAGCTCCAGCCCCCCt 3'
558 - 579 131.00 -16.90
2
miRNA  3' acGACAAUCGGGAUCGGGGCGu 5'
            || | | | | |||||| | 
Target 5' caCTCTGATCAC-AGCCCCCCt 3'
1044 - 1064 123.00 -13.60
3
miRNA  3' acGACAAUCGGGAUC-GGGGCGu 5'
            |||||   |||:| :||||| 
Target 5' tcCTGTT---CCTGGTTCCCGCt 3'
325 - 344 121.00 -21.50
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN15625775 3 COSMIC
COSN26988375 5 COSMIC
COSN30511579 13 COSMIC
COSN31501569 13 COSMIC
COSN24314893 18 COSMIC
COSN30462359 34 COSMIC
COSN30153279 56 COSMIC
COSN13777856 59 COSMIC
COSN9347320 75 COSMIC
COSN30191911 87 COSMIC
COSN31501565 95 COSMIC
COSN18716229 116 COSMIC
COSN30471894 122 COSMIC
COSN31524969 136 COSMIC
COSN30533023 148 COSMIC
COSN26569906 218 COSMIC
COSN21988158 235 COSMIC
COSN505795 248 COSMIC
COSN28638732 289 COSMIC
COSN31541878 296 COSMIC
COSN7353600 297 COSMIC
COSN31555476 299 COSMIC
COSN26644381 367 COSMIC
COSN29521611 415 COSMIC
COSN31521976 421 COSMIC
COSN31512984 572 COSMIC
COSN31541321 596 COSMIC
COSN32158722 657 COSMIC
COSN31546503 804 COSMIC
COSN31482839 820 COSMIC
COSN29083691 925 COSMIC
COSN29692443 954 COSMIC
COSN8751942 1087 COSMIC
COSN32056172 1124 COSMIC
COSN26641736 1144 COSMIC
COSN31584954 1157 COSMIC
COSN26564396 1228 COSMIC
COSN31595019 1252 COSMIC
COSN26557209 1304 COSMIC
COSN26585593 1309 COSMIC
COSN26678645 1339 COSMIC
COSN30175078 1514 COSMIC
COSN24771504 1516 COSMIC
COSN5434648 1689 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs1008963453 7 dbSNP
rs202019733 12 dbSNP
rs200290504 17 dbSNP
rs772483122 21 dbSNP
rs1042411247 25 dbSNP
rs775422127 26 dbSNP
rs746859715 27 dbSNP
rs1173013531 31 dbSNP
rs1409178891 32 dbSNP
rs1452821527 34 dbSNP
rs768453312 35 dbSNP
rs200026978 37 dbSNP
rs201239702 39 dbSNP
rs1200060187 40 dbSNP
rs761686929 42 dbSNP
rs28395789 44 dbSNP
rs1437657113 47 dbSNP
rs764656611 48 dbSNP
rs1230228183 49 dbSNP
rs1268953124 52 dbSNP
rs777089455 53 dbSNP
rs1005013822 55 dbSNP
rs1173874027 56 dbSNP
rs1483665822 58 dbSNP
rs202238953 59 dbSNP
rs200483505 60 dbSNP
rs201563755 62 dbSNP
rs1349633500 63 dbSNP
rs75124486 65 dbSNP
rs973915162 67 dbSNP
rs1311690999 68 dbSNP
rs889593399 71 dbSNP
rs199503786 80 dbSNP
rs1006642734 87 dbSNP
rs969391399 89 dbSNP
rs200361870 93 dbSNP
rs201160205 102 dbSNP
rs199649730 105 dbSNP
rs200805695 121 dbSNP
rs1184709253 127 dbSNP
rs1257376333 132 dbSNP
rs201640912 132 dbSNP
rs199830339 139 dbSNP
rs1486393459 154 dbSNP
rs200816067 157 dbSNP
rs367599517 162 dbSNP
rs148156032 173 dbSNP
rs1210300227 174 dbSNP
rs1207435059 175 dbSNP
rs1285013335 178 dbSNP
rs1228727965 179 dbSNP
rs1449282909 180 dbSNP
rs1416522905 183 dbSNP
rs1035199374 184 dbSNP
rs959773507 187 dbSNP
rs1400346279 198 dbSNP
rs915069414 199 dbSNP
rs1161857733 200 dbSNP
rs1473102272 209 dbSNP
rs1417556876 210 dbSNP
rs199858803 215 dbSNP
rs990997403 228 dbSNP
rs915368850 229 dbSNP
rs201176184 231 dbSNP
rs1444946519 232 dbSNP
rs372372643 233 dbSNP
rs946463945 236 dbSNP
rs1208931180 242 dbSNP
rs1333957536 250 dbSNP
rs762616332 258 dbSNP
rs201355118 264 dbSNP
rs1271025058 267 dbSNP
rs1432437208 270 dbSNP
rs201786301 271 dbSNP
rs1171526835 278 dbSNP
rs1039882418 281 dbSNP
rs1385019789 281 dbSNP
rs899485249 288 dbSNP
rs1322855997 289 dbSNP
rs1337633625 289 dbSNP
rs1394287598 289 dbSNP
rs200063981 289 dbSNP
rs1163140497 292 dbSNP
rs774973147 296 dbSNP
rs1316124936 297 dbSNP
rs567460982 298 dbSNP
rs201194954 300 dbSNP
rs1166840390 323 dbSNP
rs201985134 327 dbSNP
rs200538384 342 dbSNP
rs1415641386 343 dbSNP
rs1188875153 345 dbSNP
rs200895332 350 dbSNP
rs201753259 354 dbSNP
rs1223424204 357 dbSNP
rs1322283070 366 dbSNP
rs1005559237 371 dbSNP
rs1212707840 373 dbSNP
rs1441398879 374 dbSNP
rs200204183 375 dbSNP
rs1305310007 376 dbSNP
rs1015071898 378 dbSNP
rs201050884 383 dbSNP
rs1233817932 387 dbSNP
rs1370446794 389 dbSNP
rs994920351 391 dbSNP
rs1023710914 392 dbSNP
rs1280273771 407 dbSNP
rs1439004015 411 dbSNP
rs751444713 414 dbSNP
rs199815600 415 dbSNP
rs1408701705 417 dbSNP
rs35610871 418 dbSNP
rs1391555418 419 dbSNP
rs1051413108 422 dbSNP
rs1284200439 424 dbSNP
rs1392829022 430 dbSNP
rs200481873 433 dbSNP
rs1192742691 436 dbSNP
rs201570908 442 dbSNP
rs1232071855 445 dbSNP
rs1202432306 448 dbSNP
rs1483955546 454 dbSNP
rs556716143 457 dbSNP
rs186512382 465 dbSNP
rs200947386 474 dbSNP
rs1452237960 477 dbSNP
rs898271981 483 dbSNP
rs201778295 497 dbSNP
rs780749020 498 dbSNP
rs1433521390 504 dbSNP
rs1363939749 520 dbSNP
rs915060724 522 dbSNP
rs1470880523 523 dbSNP
rs1433398709 527 dbSNP
rs1406981412 528 dbSNP
rs993863256 530 dbSNP
rs1387860397 532 dbSNP
rs199625479 533 dbSNP
rs1461868789 535 dbSNP
rs34212445 539 dbSNP
rs906839942 540 dbSNP
rs1391998915 543 dbSNP
rs200615529 544 dbSNP
rs1312925975 556 dbSNP
rs1003807715 562 dbSNP
rs1226891667 564 dbSNP
rs201655163 565 dbSNP
rs200215010 570 dbSNP
rs1289574323 573 dbSNP
rs1329798446 574 dbSNP
rs1414687044 575 dbSNP
rs200725041 577 dbSNP
rs201925419 578 dbSNP
rs199822521 580 dbSNP
rs1012854436 583 dbSNP
rs1278991431 596 dbSNP
rs201002040 600 dbSNP
rs1156701337 605 dbSNP
rs200330339 606 dbSNP
rs968138780 612 dbSNP
rs45587445 619 dbSNP
rs200061039 620 dbSNP
rs200877896 621 dbSNP
rs201987984 622 dbSNP
rs1183618109 628 dbSNP
rs200542756 633 dbSNP
rs554199592 636 dbSNP
rs201468526 639 dbSNP
rs202191053 640 dbSNP
rs200177726 642 dbSNP
rs986810747 643 dbSNP
rs911168844 647 dbSNP
rs201270517 653 dbSNP
rs769083355 654 dbSNP
rs76081412 655 dbSNP
rs200742537 657 dbSNP
rs1318190328 660 dbSNP
rs1179101640 674 dbSNP
rs774006931 685 dbSNP
rs1023760096 689 dbSNP
rs1163855700 691 dbSNP
rs1459824240 693 dbSNP
rs576595475 696 dbSNP
rs1167043597 705 dbSNP
rs1424517483 705 dbSNP
rs905250517 705 dbSNP
rs191299578 706 dbSNP
rs1249046354 712 dbSNP
rs1046766832 716 dbSNP
rs539040027 719 dbSNP
rs988062463 725 dbSNP
rs3745260 727 dbSNP
rs1306472869 732 dbSNP
rs938388062 734 dbSNP
rs967995883 735 dbSNP
rs142010962 736 dbSNP
rs200951530 744 dbSNP
rs201779366 745 dbSNP
rs908197094 746 dbSNP
rs1168235624 748 dbSNP
rs1451580929 753 dbSNP
rs1390971700 758 dbSNP
rs372040942 763 dbSNP
rs1450290393 765 dbSNP
rs200074577 768 dbSNP
rs1022490312 769 dbSNP
rs761508697 772 dbSNP
rs771562046 775 dbSNP
rs1307550100 786 dbSNP
rs903982819 790 dbSNP
rs1229911043 791 dbSNP
rs999617725 792 dbSNP
rs1356157097 793 dbSNP
rs183883061 798 dbSNP
rs1031125196 811 dbSNP
rs955481624 819 dbSNP
rs200572058 823 dbSNP
rs1417233164 830 dbSNP
rs1291980899 831 dbSNP
rs201375030 831 dbSNP
rs899372877 835 dbSNP
rs930916678 837 dbSNP
rs1253417369 841 dbSNP
rs1045179358 855 dbSNP
rs1431746713 856 dbSNP
rs1371217058 858 dbSNP
rs1341101120 859 dbSNP
rs3745259 860 dbSNP
rs1019484831 861 dbSNP
rs1172271975 861 dbSNP
rs3833220 861 dbSNP
rs1193709319 862 dbSNP
rs905385972 862 dbSNP
rs560093785 863 dbSNP
rs1207882182 865 dbSNP
rs1250521344 866 dbSNP
rs527249198 868 dbSNP
rs1189379454 869 dbSNP
rs1018260297 875 dbSNP
rs1348355417 876 dbSNP
rs200170722 876 dbSNP
rs1423132007 881 dbSNP
rs1170930237 883 dbSNP
rs1374560498 884 dbSNP
rs73923234 894 dbSNP
rs1035095960 903 dbSNP
rs1168188567 907 dbSNP
rs1351254558 915 dbSNP
rs1376215982 916 dbSNP
rs1333512031 925 dbSNP
rs1337000543 928 dbSNP
rs62130738 929 dbSNP
rs1412994985 930 dbSNP
rs973935525 932 dbSNP
rs1404554981 939 dbSNP
rs1173561663 940 dbSNP
rs202187958 941 dbSNP
rs1436671868 942 dbSNP
rs919770504 948 dbSNP
rs929846596 949 dbSNP
rs199827373 954 dbSNP
rs1022304833 959 dbSNP
rs201347822 968 dbSNP
rs1443814164 971 dbSNP
rs202153542 972 dbSNP
rs1204161762 974 dbSNP
rs1028142893 975 dbSNP
rs1055881732 977 dbSNP
rs1228933670 979 dbSNP
rs894119422 983 dbSNP
rs1283696463 984 dbSNP
rs1445862388 986 dbSNP
rs974887766 991 dbSNP
rs200376276 993 dbSNP
rs775242800 995 dbSNP
rs1342311938 997 dbSNP
rs1325049427 998 dbSNP
rs111272496 1004 dbSNP
rs549984371 1005 dbSNP
rs1043966496 1007 dbSNP
rs1027826310 1008 dbSNP
rs571810666 1009 dbSNP
rs1161747384 1010 dbSNP
rs939790459 1011 dbSNP
rs1273484829 1013 dbSNP
rs999733959 1014 dbSNP
rs188609916 1026 dbSNP
rs1439042319 1028 dbSNP
rs111653827 1029 dbSNP
rs1237535366 1030 dbSNP
rs1008281594 1034 dbSNP
rs952318441 1037 dbSNP
rs1018708645 1050 dbSNP
rs964046152 1054 dbSNP
rs1187609260 1058 dbSNP
rs1463218075 1058 dbSNP
rs200414052 1061 dbSNP
rs193079482 1063 dbSNP
rs1468002802 1068 dbSNP
rs754155825 1068 dbSNP
rs1287693518 1070 dbSNP
rs1263667255 1080 dbSNP
rs535751407 1082 dbSNP
rs1229939628 1085 dbSNP
rs199607972 1094 dbSNP
rs1358637995 1096 dbSNP
rs1284852978 1100 dbSNP
rs1227951790 1102 dbSNP
rs939554999 1103 dbSNP
rs1322997458 1106 dbSNP
rs1426517846 1116 dbSNP
rs1187628801 1131 dbSNP
rs1436325286 1134 dbSNP
rs1349636118 1135 dbSNP
rs1322207363 1137 dbSNP
rs200668875 1138 dbSNP
rs951284320 1146 dbSNP
rs1407567306 1148 dbSNP
rs772226583 1151 dbSNP
rs1167350094 1155 dbSNP
rs892512106 1156 dbSNP
rs1455714170 1157 dbSNP
rs1188769489 1159 dbSNP
rs555268786 1160 dbSNP
rs201445595 1162 dbSNP
rs199867330 1167 dbSNP
rs147338610 1169 dbSNP
rs984166030 1170 dbSNP
rs928459272 1171 dbSNP
rs200643585 1175 dbSNP
rs1452047459 1176 dbSNP
rs908190385 1177 dbSNP
rs7256672 1178 dbSNP
rs1044095462 1182 dbSNP
rs199526739 1187 dbSNP
rs915569687 1193 dbSNP
rs1300153223 1196 dbSNP
rs772691803 1197 dbSNP
rs1367421829 1200 dbSNP
rs1273369944 1204 dbSNP
rs200680423 1216 dbSNP
rs1350923754 1218 dbSNP
rs565132258 1221 dbSNP
rs1042741487 1228 dbSNP
rs925549751 1251 dbSNP
rs1383364603 1252 dbSNP
rs1371844850 1259 dbSNP
rs576976020 1261 dbSNP
rs1028280404 1271 dbSNP
rs1432231669 1275 dbSNP
rs955190998 1277 dbSNP
rs1192656766 1279 dbSNP
rs1478330556 1281 dbSNP
rs1250940923 1283 dbSNP
rs760641166 1297 dbSNP
rs1179893150 1298 dbSNP
rs201785838 1301 dbSNP
rs1276855405 1303 dbSNP
rs771217065 1304 dbSNP
rs1276975462 1305 dbSNP
rs7253115 1306 dbSNP
rs1221254053 1310 dbSNP
rs200078738 1325 dbSNP
rs201069524 1326 dbSNP
rs201890381 1328 dbSNP
rs891269216 1335 dbSNP
rs200138200 1338 dbSNP
rs201045189 1339 dbSNP
rs1039825940 1340 dbSNP
rs185281676 1343 dbSNP
rs980980951 1344 dbSNP
rs1180004177 1346 dbSNP
rs1473492456 1356 dbSNP
rs762754448 1359 dbSNP
rs1007996711 1360 dbSNP
rs1177802288 1360 dbSNP
rs1057007624 1367 dbSNP
rs202027799 1368 dbSNP
rs1267888860 1377 dbSNP
rs914093623 1378 dbSNP
rs1331767716 1384 dbSNP
rs200176640 1401 dbSNP
rs1307116704 1412 dbSNP
rs35473931 1419 dbSNP
rs201097300 1421 dbSNP
rs1377358171 1423 dbSNP
rs1026932665 1425 dbSNP
rs202155959 1427 dbSNP
rs951313584 1431 dbSNP
rs945435711 1432 dbSNP
rs200520700 1434 dbSNP
rs1458771004 1449 dbSNP
rs1035935425 1452 dbSNP
rs1412568669 1456 dbSNP
rs1163949653 1465 dbSNP
rs1423371034 1472 dbSNP
rs1455793841 1475 dbSNP
rs201441460 1483 dbSNP
rs190599329 1484 dbSNP
rs200365847 1490 dbSNP
rs996891790 1502 dbSNP
rs201166107 1505 dbSNP
rs199661135 1508 dbSNP
rs200670100 1509 dbSNP
rs201868141 1512 dbSNP
rs199788151 1513 dbSNP
rs1246271233 1514 dbSNP
rs566013803 1516 dbSNP
rs1318327839 1517 dbSNP
rs1457148713 1523 dbSNP
rs1437058892 1526 dbSNP
rs371889696 1532 dbSNP
rs1385373512 1533 dbSNP
rs3745258 1538 dbSNP
rs1456325994 1541 dbSNP
rs544446524 1547 dbSNP
rs1348210628 1550 dbSNP
rs373946546 1554 dbSNP
rs1389743303 1555 dbSNP
rs570059078 1557 dbSNP
rs1442733508 1558 dbSNP
rs536160903 1559 dbSNP
rs201694094 1561 dbSNP
rs1366389942 1563 dbSNP
rs1052660761 1567 dbSNP
rs368759825 1570 dbSNP
rs537348323 1581 dbSNP
rs969692778 1589 dbSNP
rs1487756141 1597 dbSNP
rs944261449 1598 dbSNP
rs1040260086 1607 dbSNP
rs1266719764 1611 dbSNP
rs199864689 1613 dbSNP
rs201185175 1614 dbSNP
rs1340803466 1617 dbSNP
rs201903455 1618 dbSNP
rs931368722 1655 dbSNP
rs979697437 1663 dbSNP
rs200056922 1664 dbSNP
rs796340919 1675 dbSNP
rs1300327166 1676 dbSNP
rs201070950 1676 dbSNP
rs1219043254 1681 dbSNP
rs202175913 1686 dbSNP
rs558783237 1688 dbSNP
rs1305072388 1689 dbSNP
rs992447094 1691 dbSNP
rs1246369628 1707 dbSNP
rs914044597 1709 dbSNP
rs1166957889 1711 dbSNP
rs945601526 1714 dbSNP
rs1044199262 1715 dbSNP
rs1004545536 1725 dbSNP
rs925320727 1725 dbSNP
rs1035644931 1726 dbSNP
rs200500237 1730 dbSNP
rs577036219 1734 dbSNP
rs181944321 1741 dbSNP
rs1249681837 1745 dbSNP
rs779770054 1749 dbSNP
rs201761663 1753 dbSNP
rs139234103 1759 dbSNP
rs943931990 1761 dbSNP
rs1255241740 1770 dbSNP
rs1460214233 1780 dbSNP
rs201054027 1781 dbSNP
rs1283871749 1797 dbSNP
rs199858326 1800 dbSNP
rs1031342274 1809 dbSNP
rs1350028188 1811 dbSNP
rs1306249886 1821 dbSNP
rs955655874 1822 dbSNP
rs1172173631 1823 dbSNP
rs1397447674 1823 dbSNP
rs1464878595 1825 dbSNP
rs987541673 1826 dbSNP
rs779476662 1827 dbSNP
rs1168720097 1836 dbSNP
rs200524110 1838 dbSNP
rs1348084358 1841 dbSNP
rs1438084754 1846 dbSNP
rs1255080369 1872 dbSNP
rs1198320469 1875 dbSNP
rs1346874442 1880 dbSNP
rs201445920 1882 dbSNP
rs1326971653 1883 dbSNP
rs199503347 1885 dbSNP
rs1293849224 1890 dbSNP
rs1444499939 1891 dbSNP
rs200840228 1895 dbSNP
rs765792221 1900 dbSNP
rs201421516 1904 dbSNP
rs1333771476 1906 dbSNP
rs1226429462 1910 dbSNP
rs1394444955 1924 dbSNP
rs921409510 1926 dbSNP
rs199721884 1931 dbSNP
rs143249472 1940 dbSNP
rs542648082 1941 dbSNP
rs560719649 1943 dbSNP
rs1048431210 1945 dbSNP
rs531285733 1948 dbSNP
rs201658178 1949 dbSNP
rs1457221507 1950 dbSNP
rs200187295 1952 dbSNP
rs200846665 1953 dbSNP
rs895761294 1957 dbSNP
rs992813043 1958 dbSNP
rs1462371466 1975 dbSNP
rs201665505 1976 dbSNP
rs1459997127 1977 dbSNP
rs1021248162 1982 dbSNP
rs199868391 1983 dbSNP
rs1013220708 1989 dbSNP
rs543750990 1991 dbSNP
rs201240954 1993 dbSNP
rs565143136 1996 dbSNP
rs201895922 1997 dbSNP
rs113138044 1999 dbSNP
rs1316218224 2001 dbSNP
rs1260252659 2007 dbSNP
rs200879608 2008 dbSNP
rs1472071140 2009 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
     
Conditions Flp-In T-REx 293-hAGO1 cells
Location of target site 3'UTR
Original Description (Extracted from the article) ... Validation of interactions identified by CLASH suppports their reliability. ...

- Helwak A; Kudla G; Dudnakova T; Tollervey D, 2013, Cell.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1
miRNA  3' acgacaaUCGGGAUCGGGGCGu 5'
                 |||:| |||||| | 
Target 5' aggtcccAGCTCCAGCCCCCCt 3'
1 - 22
Article - Helwak A; Kudla G; Dudnakova T; Tollervey D
- Cell, 2013
MicroRNAs (miRNAs) play key roles in gene regulation, but reliable bioinformatic or experimental identification of their targets remains difficult. To provide an unbiased view of human miRNA targets, we developed a technique for ligation and sequencing of miRNA-target RNA duplexes associated with human AGO1. Here, we report data sets of more than 18,000 high-confidence miRNA-mRNA interactions. The binding of most miRNAs includes the 5' seed region, but around 60% of seed interactions are noncanonical, containing bulged or mismatched nucleotides. Moreover, seed interactions are generally accompanied by specific, nonseed base pairing. 18% of miRNA-mRNA interactions involve the miRNA 3' end, with little evidence for 5' contacts, and some of these were functionally validated. Analyses of miRNA:mRNA base pairing showed that miRNA species systematically differ in their target RNA interactions, and strongly overrepresented motifs were found in the interaction sites of several miRNAs. We speculate that these affect the response of RISC to miRNA-target binding.
LinkOut: [PMID: 23622248]
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
GSE38974 Chronic obstructive pulmonary disease -0.616 5.2e-4 -0.712 3.3e-5 25 Click to see details
GSE21687 Ependynoma primary tumors 0.332 3.7e-3 0.318 5.2e-3 64 Click to see details
GSE26953 Aortic valvular endothelial cells -0.448 1.4e-2 -0.363 4.1e-2 24 Click to see details
GSE19783 ER+ ER+ breast cancer -0.461 2.0e-2 -0.495 1.3e-2 20 Click to see details
GSE28544 Breast cancer -0.385 3.2e-2 -0.452 1.3e-2 24 Click to see details
GSE42095 Differentiated embryonic stem cells -0.38 3.7e-2 -0.423 2.2e-2 23 Click to see details
GSE34608 Pulmonary tuberculosis and sarcoidosis -0.389 4.5e-2 -0.662 7.4e-4 20 Click to see details
GSE15076 Monocyte-derived dendritic cells 0.595 4.5e-2 0.383 1.5e-1 9 Click to see details
GSE19350 CNS germ cell tumors -0.45 7.1e-2 -0.350 1.3e-1 12 Click to see details
GSE19783 ER- ER- breast cancer 0.155 8.6e-2 0.178 5.8e-2 79 Click to see details
GSE35602 Colorectal cancer stromal tissue 0.28 8.8e-2 0.367 3.6e-2 25 Click to see details
GSE17498 Multiple myeloma 0.144 1.9e-1 -0.052 3.7e-1 40 Click to see details
GSE32688 Pancreatic cancer 0.16 1.9e-1 0.270 6.8e-2 32 Click to see details
GSE21032 Prostate cancer -0.053 3.2e-1 -0.059 3.0e-1 83 Click to see details
GSE19536 Breast cancer 0.047 3.2e-1 0.087 1.9e-1 100 Click to see details
GSE38226 Liver fibrosis 0.049 4.2e-1 0.308 8.7e-2 21 Click to see details
GSE28260 Renal cortex and medulla 0.027 4.7e-1 -0.038 4.5e-1 13 Click to see details
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
BRCA -0.343 0 -0.247 0.01 84 Click to see details
PRAD -0.369 0 -0.400 0 50 Click to see details
HNSC -0.386 0.01 -0.391 0.01 42 Click to see details
KIRP -0.414 0.01 -0.245 0.09 32 Click to see details
LIHC -0.327 0.01 -0.309 0.02 49 Click to see details
LUSC -0.182 0.14 -0.146 0.19 38 Click to see details
KICH 0.219 0.15 0.218 0.15 25 Click to see details
PAAD -0.686 0.16 -0.600 0.2 4 Click to see details
LUAD 0.303 0.17 0.294 0.18 12 Click to see details
ESCA -0.271 0.21 -0.282 0.2 11 Click to see details
UCEC -0.16 0.26 -0.132 0.3 19 Click to see details
COAD 0.262 0.27 0.167 0.35 8 Click to see details
THCA -0.083 0.27 -0.005 0.49 59 Click to see details
BLCA 0.154 0.27 0.224 0.19 18 Click to see details
STAD -0.101 0.29 -0.085 0.32 32 Click to see details
PCPG -0.547 0.32 -0.500 0.33 3 Click to see details
CESC -0.431 0.36 -0.500 0.33 3 Click to see details
KIRC -0.029 0.41 -0.048 0.35 68 Click to see details
CHOL 0.082 0.42 0.267 0.24 9 Click to see details
CHOL 0.082 0.42 0.267 0.24 9 Click to see details
CHOL 0.082 0.42 0.267 0.24 9 Click to see details
412 hsa-miR-744-5p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT016085 ARL15 ADP ribosylation factor like GTPase 15 1 1
MIRT016086 AGPAT3 1-acylglycerol-3-phosphate O-acyltransferase 3 1 2
MIRT016087 PPTC7 PTC7 protein phosphatase homolog 2 3
MIRT016088 RASSF1 Ras association domain family member 1 1 1
MIRT016089 IER5 immediate early response 5 1 1
MIRT037383 UFC1 ubiquitin-fold modifier conjugating enzyme 1 1 1
MIRT037384 STAM2 signal transducing adaptor molecule 2 1 1
MIRT037385 SRRM2 serine/arginine repetitive matrix 2 1 1
MIRT037386 DCXR dicarbonyl and L-xylulose reductase 1 1
MIRT037387 TSPAN17 tetraspanin 17 1 1
MIRT037388 ACTB actin beta 1 1
MIRT037389 HIST1H2BC histone cluster 1 H2B family member c 1 1
MIRT037390 ATP5B ATP synthase, H+ transporting, mitochondrial F1 complex, beta polypeptide 1 1
MIRT037391 VDAC1 voltage dependent anion channel 1 1 1
MIRT037392 RNASEK ribonuclease K 1 1
MIRT037393 CDK16 cyclin dependent kinase 16 1 1
MIRT037394 ZCCHC24 zinc finger CCHC-type containing 24 1 1
MIRT037395 ARRDC2 arrestin domain containing 2 1 1
MIRT037396 SGMS1 sphingomyelin synthase 1 1 1
MIRT037397 HSPD1 heat shock protein family D (Hsp60) member 1 1 1
MIRT037398 MRPL46 mitochondrial ribosomal protein L46 1 1
MIRT037399 RHEB Ras homolog, mTORC1 binding 1 1
MIRT037400 ND1 NADH dehydrogenase, subunit 1 (complex I) 1 1
MIRT037401 TP53I13 tumor protein p53 inducible protein 13 1 1
MIRT037402 CD44 CD44 molecule (Indian blood group) 1 1
MIRT037403 USP12 ubiquitin specific peptidase 12 1 1
MIRT037404 AP2B1 adaptor related protein complex 2 beta 1 subunit 1 1
MIRT037405 RPL18A ribosomal protein L18a 1 1
MIRT037406 PPP1CA protein phosphatase 1 catalytic subunit alpha 1 1
MIRT037407 TNRC6B trinucleotide repeat containing 6B 1 1
MIRT037408 PXK PX domain containing serine/threonine kinase like 1 1
MIRT037409 TDRKH tudor and KH domain containing 1 1
MIRT037410 PRRC2A proline rich coiled-coil 2A 1 1
MIRT037411 ATP11A ATPase phospholipid transporting 11A 1 1
MIRT037412 NDE1 nudE neurodevelopment protein 1 1 1
MIRT037413 STK16 serine/threonine kinase 16 1 1
MIRT037414 PSMB2 proteasome subunit beta 2 1 1
MIRT037415 EPN1 epsin 1 1 1
MIRT037416 EN2 engrailed homeobox 2 1 1
MIRT037417 LARP1 La ribonucleoprotein domain family member 1 1 1
MIRT037418 SRCAP Snf2 related CREBBP activator protein 1 1
MIRT037419 SMARCD1 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1 1 1
MIRT037420 AP2A2 adaptor related protein complex 2 alpha 2 subunit 1 1
MIRT037421 ACTG1 actin gamma 1 1 1
MIRT037422 PIKFYVE phosphoinositide kinase, FYVE-type zinc finger containing 1 1
MIRT037423 UBE2O ubiquitin conjugating enzyme E2 O 1 1
MIRT037424 KLHL15 kelch like family member 15 1 1
MIRT037425 SECISBP2 SECIS binding protein 2 1 1
MIRT037426 KIAA0922 transmembrane 131 like 1 1
MIRT037427 PTMA prothymosin, alpha 1 1
MIRT037428 WDR45B WD repeat domain 45B 1 1
MIRT037429 ZNF282 zinc finger protein 282 1 1
MIRT037430 GART phosphoribosylglycinamide formyltransferase, phosphoribosylglycinamide synthetase, phosphoribosylaminoimidazole synthetase 1 1
MIRT037431 TNKS tankyrase 1 1
MIRT037432 NOP2 NOP2 nucleolar protein 1 1
MIRT037433 GAK cyclin G associated kinase 1 1
MIRT037434 ATP6 ATP synthase F0 subunit 6 1 1
MIRT037435 DIDO1 death inducer-obliterator 1 1 1
MIRT037436 RPL3 ribosomal protein L3 1 1
MIRT037437 AIMP2 aminoacyl tRNA synthetase complex interacting multifunctional protein 2 1 1
MIRT037438 PIGC phosphatidylinositol glycan anchor biosynthesis class C 1 1
MIRT037439 ARHGEF2 Rho/Rac guanine nucleotide exchange factor 2 1 1
MIRT037440 USP21 ubiquitin specific peptidase 21 1 1
MIRT037441 NUFIP2 NUFIP2, FMR1 interacting protein 2 1 1
MIRT037442 RPS6 ribosomal protein S6 1 1
MIRT037443 ILKAP ILK associated serine/threonine phosphatase 1 1
MIRT037444 COX1 cytochrome c oxidase subunit I 1 1
MIRT037445 VPS37C VPS37C, ESCRT-I subunit 1 1
MIRT037446 CDK12 cyclin dependent kinase 12 1 1
MIRT037447 RBM8A RNA binding motif protein 8A 1 1
MIRT037448 CKB creatine kinase B 1 1
MIRT037449 DHX57 DExH-box helicase 57 1 1
MIRT037450 DDX23 DEAD-box helicase 23 1 1
MIRT037451 ABI3 ABI family member 3 1 1
MIRT037452 GATAD2B GATA zinc finger domain containing 2B 1 1
MIRT037453 PDPK1 3-phosphoinositide dependent protein kinase 1 1 1
MIRT037454 C17orf70 Fanconi anemia core complex associated protein 100 1 1
MIRT037455 SKI SKI proto-oncogene 1 1
MIRT037456 KCTD11 potassium channel tetramerization domain containing 11 1 1
MIRT037457 GNB2L1 receptor for activated C kinase 1 1 1
MIRT037458 NCOA3 nuclear receptor coactivator 3 1 1
MIRT037459 PAK4 p21 (RAC1) activated kinase 4 2 3
MIRT037460 GDI2 GDP dissociation inhibitor 2 1 1
MIRT037461 SLC2A4RG SLC2A4 regulator 1 1
MIRT037462 SLX4 SLX4 structure-specific endonuclease subunit 1 1
MIRT037463 COPA coatomer protein complex subunit alpha 1 1
MIRT037464 GPRASP2 G protein-coupled receptor associated sorting protein 2 1 1
MIRT037465 GGA3 golgi associated, gamma adaptin ear containing, ARF binding protein 3 1 1
MIRT037466 LIMS1 LIM zinc finger domain containing 1 1 1
MIRT037467 COTL1 coactosin like F-actin binding protein 1 1 1
MIRT037468 CAPNS1 calpain small subunit 1 1 1
MIRT037469 FRZB frizzled-related protein 1 1
MIRT037470 UBQLN4 ubiquilin 4 1 1
MIRT037471 NUP153 nucleoporin 153 1 1
MIRT037472 TMEM175 transmembrane protein 175 1 1
MIRT037473 HIST1H2BD histone cluster 1 H2B family member d 1 1
MIRT037474 SREBF1 sterol regulatory element binding transcription factor 1 1 1
MIRT037475 BCL2L12 BCL2 like 12 1 1
MIRT037476 HIST2H2AA3 histone cluster 2 H2A family member a3 1 1
MIRT037477 MINK1 misshapen like kinase 1 1 1
MIRT037478 PDXK pyridoxal kinase 1 1
MIRT037479 FAM110A family with sequence similarity 110 member A 1 1
MIRT037480 ZNF598 zinc finger protein 598 1 1
MIRT037481 ILK integrin linked kinase 1 1
MIRT037482 HINT1 histidine triad nucleotide binding protein 1 1 1
MIRT037483 WBP2 WW domain binding protein 2 1 1
MIRT037484 CYTB cytochrome b 1 1
MIRT037485 SCAMP2 secretory carrier membrane protein 2 1 1
MIRT037486 TRIM33 tripartite motif containing 33 1 1
MIRT037487 SLC25A3 solute carrier family 25 member 3 1 1
MIRT037488 IRS4 insulin receptor substrate 4 1 1
MIRT037489 TSR1 TSR1, ribosome maturation factor 1 1
MIRT037490 TCOF1 treacle ribosome biogenesis factor 1 1 1
MIRT037491 ATXN2L ataxin 2 like 1 1
MIRT037492 MTOR mechanistic target of rapamycin kinase 1 1
MIRT037493 ZNF318 zinc finger protein 318 1 1
MIRT037494 HNRNPC heterogeneous nuclear ribonucleoprotein C (C1/C2) 2 3
MIRT037495 SAMD4B sterile alpha motif domain containing 4B 1 1
MIRT037496 STMN1 stathmin 1 1 1
MIRT037497 SAT1 spermidine/spermine N1-acetyltransferase 1 1 1
MIRT037498 SALL1 spalt like transcription factor 1 1 1
MIRT037499 ZSCAN18 zinc finger and SCAN domain containing 18 1 1
MIRT037500 SLC35D1 solute carrier family 35 member D1 1 1
MIRT037501 TM9SF3 transmembrane 9 superfamily member 3 1 1
MIRT037502 TIAM1 T-cell lymphoma invasion and metastasis 1 1 1
MIRT037503 CHD5 chromodomain helicase DNA binding protein 5 1 1
MIRT037504 BAG6 BCL2 associated athanogene 6 1 1
MIRT037505 MED28 mediator complex subunit 28 1 1
MIRT037506 ANKRD52 ankyrin repeat domain 52 1 1
MIRT037507 MTHFD1 methylenetetrahydrofolate dehydrogenase, cyclohydrolase and formyltetrahydrofolate synthetase 1 1 1
MIRT037508 PPDPF pancreatic progenitor cell differentiation and proliferation factor 1 1
MIRT037509 PRKACA protein kinase cAMP-activated catalytic subunit alpha 1 1
MIRT037510 HPCAL4 hippocalcin like 4 1 1
MIRT037511 ZNF256 zinc finger protein 256 1 1
MIRT037512 CGNL1 cingulin like 1 1 1
MIRT037513 TUBA1B tubulin alpha 1b 1 1
MIRT037514 LNPEP leucyl and cystinyl aminopeptidase 1 1
MIRT037515 PDE4A phosphodiesterase 4A 1 1
MIRT037516 HOXD11 homeobox D11 2 3
MIRT037517 QARS glutaminyl-tRNA synthetase 1 1
MIRT037518 G3BP1 G3BP stress granule assembly factor 1 1 1
MIRT037519 PLEKHM2 pleckstrin homology and RUN domain containing M2 1 1
MIRT037520 POLR2A RNA polymerase II subunit A 1 1
MIRT037521 KIAA1462 junctional cadherin 5 associated 1 1
MIRT037522 SF3A1 splicing factor 3a subunit 1 1 1
MIRT037523 YBX1 Y-box binding protein 1 1 1
MIRT037524 PTGES3 prostaglandin E synthase 3 1 1
MIRT037525 FOXO3 forkhead box O3 1 1
MIRT037526 ATP5G3 ATP synthase, H+ transporting, mitochondrial Fo complex subunit C3 (subunit 9) 1 1
MIRT037527 AARS alanyl-tRNA synthetase 1 1
MIRT037528 ZNF155 zinc finger protein 155 1 1
MIRT037529 NCS1 neuronal calcium sensor 1 1 1
MIRT037530 FKBP4 FK506 binding protein 4 1 1
MIRT037531 ARHGDIA Rho GDP dissociation inhibitor alpha 1 1
MIRT037532 MAPK7 mitogen-activated protein kinase 7 1 1
MIRT037533 AGPAT2 1-acylglycerol-3-phosphate O-acyltransferase 2 1 1
MIRT037534 HIST1H1E histone cluster 1 H1 family member e 1 1
MIRT037535 MLF2 myeloid leukemia factor 2 1 1
MIRT037536 EDC3 enhancer of mRNA decapping 3 1 1
MIRT037537 CHRAC1 chromatin accessibility complex 1 1 1
MIRT037538 WIPF3 WAS/WASL interacting protein family member 3 1 1
MIRT037539 COX2 cytochrome c oxidase subunit II 1 1
MIRT037540 SRSF1 serine and arginine rich splicing factor 1 1 1
MIRT037541 CTNNBIP1 catenin beta interacting protein 1 1 1
MIRT037542 RPL4 ribosomal protein L4 1 1
MIRT037543 COX3 cytochrome c oxidase III 1 1
MIRT037544 DDX54 DEAD-box helicase 54 1 1
MIRT037545 TOB2 transducer of ERBB2, 2 1 1
MIRT037546 MAN2C1 mannosidase alpha class 2C member 1 1 1
MIRT037547 SMCR7L mitochondrial elongation factor 1 1 1
MIRT037548 RPLP1 ribosomal protein lateral stalk subunit P1 1 1
MIRT037549 RAN RAN, member RAS oncogene family 1 1
MIRT037550 NONO non-POU domain containing octamer binding 1 1
MIRT037551 CYB5R3 cytochrome b5 reductase 3 1 1
MIRT037552 SRGAP1 SLIT-ROBO Rho GTPase activating protein 1 1 1
MIRT037553 COLGALT1 collagen beta(1-O)galactosyltransferase 1 1 1
MIRT037554 MGRN1 mahogunin ring finger 1 1 1
MIRT037555 ANAPC1 anaphase promoting complex subunit 1 1 1
MIRT037556 TBX1 T-box 1 1 1
MIRT037557 NXPH4 neurexophilin 4 1 1
MIRT037558 HSPA1B heat shock protein family A (Hsp70) member 1B 1 1
MIRT037559 UBE2A ubiquitin conjugating enzyme E2 A 1 1
MIRT037560 KPNB1 karyopherin subunit beta 1 1 1
MIRT037561 NDUFB10 NADH:ubiquinone oxidoreductase subunit B10 1 1
MIRT037562 SYMPK symplekin 1 1
MIRT037563 SYPL1 synaptophysin like 1 1 1
MIRT037564 LRP3 LDL receptor related protein 3 1 1
MIRT037565 DDX24 DEAD-box helicase 24 1 1
MIRT037566 WDR37 WD repeat domain 37 1 1
MIRT037567 RPS14 ribosomal protein S14 1 1
MIRT037568 FAM53C family with sequence similarity 53 member C 1 1
MIRT037569 NMT1 N-myristoyltransferase 1 1 1
MIRT037570 PAGR1 PAXIP1 associated glutamate rich protein 1 1 1
MIRT037571 AKT2 AKT serine/threonine kinase 2 1 1
MIRT037572 TMEM14C transmembrane protein 14C 1 1
MIRT037573 MEX3D mex-3 RNA binding family member D 1 1
MIRT037574 BRAF B-Raf proto-oncogene, serine/threonine kinase 1 1
MIRT037575 POLR2L RNA polymerase II subunit L 1 1
MIRT037576 SERP1 stress associated endoplasmic reticulum protein 1 1 1
MIRT037577 C8orf33 chromosome 8 open reading frame 33 1 1
MIRT037578 NR1D2 nuclear receptor subfamily 1 group D member 2 1 1
MIRT037579 POLD3 DNA polymerase delta 3, accessory subunit 1 1
MIRT037580 HMGA1 high mobility group AT-hook 1 1 1
MIRT037581 SLC35B4 solute carrier family 35 member B4 1 1
MIRT037582 PELP1 proline, glutamate and leucine rich protein 1 1 1
MIRT037583 PLEKHG2 pleckstrin homology and RhoGEF domain containing G2 1 1
MIRT037584 RPL7A ribosomal protein L7a 1 1
MIRT037585 LAIR1 leukocyte associated immunoglobulin like receptor 1 1 1
MIRT037586 RPL10 ribosomal protein L10 1 1
MIRT037587 MRPS16 mitochondrial ribosomal protein S16 1 1
MIRT037588 SRM spermidine synthase 1 1
MIRT037589 EIF3K eukaryotic translation initiation factor 3 subunit K 1 1
MIRT037590 DESI1 desumoylating isopeptidase 1 1 1
MIRT037591 BET1 Bet1 golgi vesicular membrane trafficking protein 1 1
MIRT037592 HTRA2 HtrA serine peptidase 2 1 1
MIRT037593 LARP6 La ribonucleoprotein domain family member 6 1 1
MIRT037594 NOTCH2 notch 2 1 1
MIRT037595 ADCY9 adenylate cyclase 9 1 1
MIRT037596 C6orf62 chromosome 6 open reading frame 62 1 1
MIRT037597 FBXL19 F-box and leucine rich repeat protein 19 1 1
MIRT037598 L3MBTL2 L3MBTL2, polycomb repressive complex 1 subunit 1 1
MIRT037599 TRIM28 tripartite motif containing 28 1 1
MIRT037600 LGALS3 galectin 3 1 1
MIRT037601 IGSF8 immunoglobulin superfamily member 8 1 1
MIRT037602 LIN37 lin-37 DREAM MuvB core complex component 1 1
MIRT037603 PTPRF protein tyrosine phosphatase, receptor type F 1 1
MIRT037604 MTSS1L MTSS1L, I-BAR domain containing 1 1
MIRT037605 TRMT2A tRNA methyltransferase 2 homolog A 1 1
MIRT037606 DVL1 dishevelled segment polarity protein 1 1 1
MIRT037607 ATP5S ATP synthase, H+ transporting, mitochondrial Fo complex subunit s (factor B) 1 1
MIRT037608 TOR2A torsin family 2 member A 1 1
MIRT037609 RPS6KA5 ribosomal protein S6 kinase A5 1 1
MIRT037610 SMYD4 SET and MYND domain containing 4 1 1
MIRT037611 TJAP1 tight junction associated protein 1 1 1
MIRT037612 IRAK1 interleukin 1 receptor associated kinase 1 1 1
MIRT037613 PPM1M protein phosphatase, Mg2+/Mn2+ dependent 1M 1 1
MIRT037614 EIF4A2 eukaryotic translation initiation factor 4A2 1 1
MIRT037615 GFER growth factor, augmenter of liver regeneration 1 1
MIRT037616 PKP2 plakophilin 2 1 1
MIRT037617 FARSB phenylalanyl-tRNA synthetase beta subunit 1 1
MIRT037618 OPRD1 opioid receptor delta 1 1 1
MIRT037619 CCNY cyclin Y 1 1
MIRT037620 CNOT1 CCR4-NOT transcription complex subunit 1 1 1
MIRT037621 CXCL16 C-X-C motif chemokine ligand 16 1 1
MIRT037622 CEBPA CCAAT/enhancer binding protein alpha 1 1
MIRT037623 DDX11 DEAD/H-box helicase 11 1 1
MIRT037624 URB1 URB1 ribosome biogenesis 1 homolog (S. cerevisiae) 1 1
MIRT037625 SBF1 SET binding factor 1 1 1
MIRT037626 GNB2 G protein subunit beta 2 1 1
MIRT037627 KMT2D lysine methyltransferase 2D 2 3
MIRT037628 DDX17 DEAD-box helicase 17 1 1
MIRT037629 SORBS3 sorbin and SH3 domain containing 3 1 1
MIRT037630 TAPBP TAP binding protein 1 1
MIRT037631 BCR BCR, RhoGEF and GTPase activating protein 1 1
MIRT037632 RPL18 ribosomal protein L18 1 1
MIRT037633 INTS3 integrator complex subunit 3 1 1
MIRT037634 CDC25B cell division cycle 25B 1 1
MIRT037635 LDOC1L retrotransposon Gag like 6 1 1
MIRT037636 TUB tubby bipartite transcription factor 1 1
MIRT037637 NUDT2 nudix hydrolase 2 1 1
MIRT037638 CDAN1 codanin 1 1 1
MIRT037639 MRS2 MRS2, magnesium transporter 1 1
MIRT037640 PYGB glycogen phosphorylase B 1 1
MIRT037641 LDLRAD3 low density lipoprotein receptor class A domain containing 3 1 1
MIRT037642 COL5A1 collagen type V alpha 1 chain 1 1
MIRT037643 ATF7IP activating transcription factor 7 interacting protein 1 1
MIRT037644 AGO1 argonaute 1, RISC catalytic component 1 1
MIRT037645 ZNF212 zinc finger protein 212 1 1
MIRT037646 TSC2 TSC complex subunit 2 1 1
MIRT037647 FASN fatty acid synthase 1 1
MIRT037648 NOL9 nucleolar protein 9 1 1
MIRT037649 CLUH clustered mitochondria homolog 1 1
MIRT037650 PHF8 PHD finger protein 8 1 1
MIRT037651 EIF4G1 eukaryotic translation initiation factor 4 gamma 1 1 1
MIRT037652 TRAPPC12 trafficking protein particle complex 12 1 1
MIRT037653 HOXC11 homeobox C11 1 1
MIRT037654 DGCR14 ess-2 splicing factor homolog 1 1
MIRT037655 SLC25A1 solute carrier family 25 member 1 1 1
MIRT037656 MEX3C mex-3 RNA binding family member C 1 1
MIRT037657 RAI1 retinoic acid induced 1 1 1
MIRT037658 LY6E lymphocyte antigen 6 family member E 1 1
MIRT037659 SEC16A SEC16 homolog A, endoplasmic reticulum export factor 1 1
MIRT037660 RPL37 ribosomal protein L37 1 1
MIRT037661 CNN2 calponin 2 1 1
MIRT037662 ALDH18A1 aldehyde dehydrogenase 18 family member A1 1 1
MIRT037663 POMGNT1 protein O-linked mannose N-acetylglucosaminyltransferase 1 (beta 1,2-) 1 1
MIRT037664 EIF4A1 eukaryotic translation initiation factor 4A1 1 1
MIRT037665 PIM3 Pim-3 proto-oncogene, serine/threonine kinase 1 1
MIRT037666 PTPMT1 protein tyrosine phosphatase, mitochondrial 1 1 1
MIRT037667 NCEH1 neutral cholesterol ester hydrolase 1 1 1
MIRT037668 ART5 ADP-ribosyltransferase 5 1 1
MIRT037669 MRPS2 mitochondrial ribosomal protein S2 1 1
MIRT037670 NCL nucleolin 1 1
MIRT037671 NCKAP5L NCK associated protein 5 like 1 1
MIRT037672 ZCCHC14 zinc finger CCHC-type containing 14 1 1
MIRT037673 CCDC71 coiled-coil domain containing 71 1 1
MIRT037674 SURF4 surfeit 4 1 1
MIRT037675 RPL13 ribosomal protein L13 1 1
MIRT037676 ACTN4 actinin alpha 4 1 1
MIRT037677 PA2G4 proliferation-associated 2G4 1 1
MIRT037678 MIF macrophage migration inhibitory factor 1 1
MIRT037679 UBE2N ubiquitin conjugating enzyme E2 N 1 1
MIRT037680 LYNX1 Ly6/neurotoxin 1 1 1
MIRT037681 TACC3 transforming acidic coiled-coil containing protein 3 1 1
MIRT037682 GSR glutathione-disulfide reductase 1 1
MIRT037683 GSK3A glycogen synthase kinase 3 alpha 1 1
MIRT037684 ZMYM3 zinc finger MYM-type containing 3 1 1
MIRT037685 ERP29 endoplasmic reticulum protein 29 1 1
MIRT037686 MATR3 matrin 3 1 1
MIRT037687 FANCG Fanconi anemia complementation group G 1 1
MIRT037688 FAM83G family with sequence similarity 83 member G 1 1
MIRT037689 DUSP18 dual specificity phosphatase 18 1 1
MIRT037690 MYC MYC proto-oncogene, bHLH transcription factor 3 2
MIRT037691 TSPAN7 tetraspanin 7 1 1
MIRT037692 ATMIN ATM interactor 1 1
MIRT037693 SEPT2 septin 2 1 1
MIRT037694 FOXRED2 FAD dependent oxidoreductase domain containing 2 1 1
MIRT037695 TECR trans-2,3-enoyl-CoA reductase 1 1
MIRT037696 MRPL11 mitochondrial ribosomal protein L11 1 1
MIRT037697 IP6K1 inositol hexakisphosphate kinase 1 1 1
MIRT037698 PSMD4 proteasome 26S subunit, non-ATPase 4 1 1
MIRT037699 SH3GL1 SH3 domain containing GRB2 like 1, endophilin A2 1 1
MIRT037700 CTNNB1 catenin beta 1 1 1
MIRT037701 TMEM189 transmembrane protein 189 1 1
MIRT037702 LDLR low density lipoprotein receptor 1 1
MIRT037703 OGFR opioid growth factor receptor 1 1
MIRT037704 ADAP2 ArfGAP with dual PH domains 2 1 1
MIRT037705 LIPA lipase A, lysosomal acid type 1 1
MIRT037706 SNAPC4 small nuclear RNA activating complex polypeptide 4 1 1
MIRT037707 FBN2 fibrillin 2 1 1
MIRT037708 ZNF704 zinc finger protein 704 1 1
MIRT037709 EIF3M eukaryotic translation initiation factor 3 subunit M 1 1
MIRT037710 SMC1A structural maintenance of chromosomes 1A 1 1
MIRT037711 FZR1 fizzy and cell division cycle 20 related 1 1 1
MIRT037712 NANOS1 nanos C2HC-type zinc finger 1 1 1
MIRT037713 PRR12 proline rich 12 1 1
MIRT037714 PHC2 polyhomeotic homolog 2 1 1
MIRT037715 NOP9 NOP9 nucleolar protein 1 1
MIRT037716 HM13 histocompatibility minor 13 1 1
MIRT037717 PRDX5 peroxiredoxin 5 1 1
MIRT037718 IRGQ immunity related GTPase Q 1 1
MIRT037719 TGFB1 transforming growth factor beta 1 7 2
MIRT037720 MARCH3 membrane associated ring-CH-type finger 3 1 1
MIRT037721 TBX2 T-box 2 1 1
MIRT037722 TSC22D3 TSC22 domain family member 3 1 1
MIRT037723 DUT deoxyuridine triphosphatase 1 1
MIRT037724 FAM171A2 family with sequence similarity 171 member A2 1 1
MIRT037725 FGFR1 fibroblast growth factor receptor 1 1 1
MIRT037726 FRAT1 FRAT1, WNT signaling pathway regulator 1 1
MIRT037727 PSMD11 proteasome 26S subunit, non-ATPase 11 1 1
MIRT037728 PABPC1 poly(A) binding protein cytoplasmic 1 1 1
MIRT037729 ENO1 enolase 1 1 1
MIRT037730 AP3D1 adaptor related protein complex 3 delta 1 subunit 1 1
MIRT037731 TUBA1A tubulin alpha 1a 1 1
MIRT037732 ULK3 unc-51 like kinase 3 1 1
MIRT037733 PIP5K1A phosphatidylinositol-4-phosphate 5-kinase type 1 alpha 1 1
MIRT037734 SLC25A46 solute carrier family 25 member 46 1 1
MIRT037735 MED15 mediator complex subunit 15 1 1
MIRT037736 IRF2BP1 interferon regulatory factor 2 binding protein 1 1 1
MIRT037737 UBA1 ubiquitin like modifier activating enzyme 1 1 1
MIRT037738 ATHL1 protein-glucosylgalactosylhydroxylysine glucosidase 1 1
MIRT037739 CTNNA1 catenin alpha 1 1 1
MIRT037740 ADRM1 adhesion regulating molecule 1 1 1
MIRT037741 CCDC106 coiled-coil domain containing 106 1 1
MIRT054493 EEF1A2 eukaryotic translation elongation factor 1 alpha 2 3 1
MIRT451195 PIN1 peptidylprolyl cis/trans isomerase, NIMA-interacting 1 2 2
MIRT452931 DISC1 disrupted in schizophrenia 1 2 2
MIRT455468 LYPLA2 lysophospholipase II 2 2
MIRT457068 TOR4A torsin family 4 member A 2 2
MIRT464195 VGLL4 vestigial like family member 4 2 4
MIRT483030 KHSRP KH-type splicing regulatory protein 2 4
MIRT486062 CTDNEP1 CTD nuclear envelope phosphatase 1 2 2
MIRT486120 INO80E INO80 complex subunit E 2 2
MIRT486866 DPF1 double PHD fingers 1 2 2
MIRT488343 PAX2 paired box 2 2 2
MIRT488790 POFUT2 protein O-fucosyltransferase 2 2 2
MIRT490249 MFI2 melanotransferrin 2 2
MIRT490264 HAAO 3-hydroxyanthranilate 3,4-dioxygenase 2 2
MIRT490756 SRCIN1 SRC kinase signaling inhibitor 1 2 2
MIRT492321 SETD1B SET domain containing 1B 2 2
MIRT492851 NRGN neurogranin 2 2
MIRT499604 ANKRD45 ankyrin repeat domain 45 2 2
MIRT500189 BARX1 BARX homeobox 1 2 4
MIRT516765 FAM212B family with sequence similarity 212 member B 2 4
MIRT517949 TRIM59 tripartite motif containing 59 2 2
MIRT521182 SCAF4 SR-related CTD associated factor 4 2 2
MIRT526462 OSBPL5 oxysterol binding protein like 5 2 2
MIRT535148 PLEKHG5 pleckstrin homology and RhoGEF domain containing G5 2 2
MIRT569528 AP5Z1 adaptor related protein complex 5 zeta 1 subunit 2 2
MIRT570593 NFIX nuclear factor I X 2 2
MIRT571219 F2R coagulation factor II thrombin receptor 2 2
MIRT574145 MARVELD1 MARVEL domain containing 1 2 2
MIRT608758 CACNA1A calcium voltage-gated channel subunit alpha1 A 2 2
MIRT649509 RAB17 RAB17, member RAS oncogene family 2 2
MIRT692165 RNF207 ring finger protein 207 2 2
MIRT703495 FNDC3B fibronectin type III domain containing 3B 2 2
MIRT711081 NEUROD2 neuronal differentiation 2 2 2
MIRT712090 UNC13A unc-13 homolog A 2 2
MIRT712531 CYTH2 cytohesin 2 2 2
MIRT712755 GMDS GDP-mannose 4,6-dehydratase 2 2
MIRT712893 TGFA transforming growth factor alpha 2 2
MIRT714684 PRX periaxin 2 2
MIRT714723 VPS8 VPS8, CORVET complex subunit 2 2
MIRT714814 NOB1 NIN1/PSMD8 binding protein 1 homolog 2 2
MIRT716774 C1orf229 chromosome 1 open reading frame 229 2 2
MIRT717511 HRNR hornerin 2 2
MIRT717653 THBS2 thrombospondin 2 2 2
MIRT719595 PIAS4 protein inhibitor of activated STAT 4 2 2
MIRT720525 PTGR2 prostaglandin reductase 2 2 2
MIRT724925 VPS18 VPS18, CORVET/HOPS core subunit 2 2
MIRT737146 NOS3 nitric oxide synthase 3 1 0
MIRT756003 SLC7A5 solute carrier family 7 member 5 3 1
miRNA-Drug Associations
miRNA Small Melocule FDA CID Detection Method Condition PMID Year Expression Pattern of miRNA
miR-744 Hexahydro-1,3,5-trinitro-1,3,5-triazine (RDX) NULL 8490 Microarray mouse brain 19270793 2009 down-regulated
miR-744 Tert-butyl hydroperoxide (t-BHP) NULL 6410 Microarray mouse auditory cells 20510889 2010 up-regulated
miR-744 Ursodeoxycholic acid (UDCA) approved 31401 Microarray rat Liver 20689055 2010 up-regulated
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-mir-744 Cisplatin 5460033 NSC119875 approved resistant High Gastric Cancer cell line (SGC-7901)
hsa-mir-744 Dabrafenib 44462760 NSC764134 approved resistant cell line (A375)
hsa-mir-744 Androstenedione 6128 NSC9563 sensitive cell line (MCF-7)
hsa-mir-744 Fluorouracil 3385 NSC19893 approved resistant cell line (OE19)
hsa-mir-744 Fluorouracil 3385 NSC19893 approved resistant cell line (KYSE)
hsa-mir-744 Ceritinib 57379345 NSC776422 approved resistant cell line (H3122)
hsa-mir-744 Cisplatin 5460033 NSC119875 approved resistant cell line (SGC-7901)
hsa-miR-744-5p [1,1'-binaphthalene]-2,2',3,3'-tetrol 316673 NSC245006 sensitive
hsa-miR-744-5p 4-n-[12-[(5-amino-6-chloropyrimidin-4-yl)amino]dodecyl]-6-chloropyrimidine-4,5-diamine 358989 NSC619196 sensitive
hsa-miR-744-5p 5,7-dibromo-2-[(e)-2-(4-hydroxy-3-methoxyphenyl)ethenyl]quinolin-8-ol 135460261 NSC67090 sensitive
hsa-miR-744-5p Benzyl 2-(dibenzylamino)-3-phenylpropanoate 375616 NSC655438 sensitive
hsa-miR-744-5p N'-[(Z)-[(4Z)-2-(1,3-benzodioxol-5-yl)-4-[[4-oxo-4-[2-(trifluoromethyl)anilino]butanoyl]hydrazinylidene]chromen-3-ylidene]amino]-N-[2-(trifluoromethyl)phenyl]butanediamide 6399328 NSC641210 sensitive
hsa-miR-744-5p Paullone analog 47 396411 NSC702373 sensitive
hsa-miR-744-5p Ursa-11,13(18)-dien-28-oic acid-3.beta.-ol 378695 NSC661747 sensitive
hsa-miR-744-5p Tamoxifen 2733525 NSC180973 approved resistant High Breast Cancer cell line (MCF-7, LY2)
hsa-miR-744-5p Cisplatin 5460033 NSC119875 approved resistant High Ovarian Cancer cell line (SKOV3)
hsa-miR-744-5p Carboplatin 38904 NSC241240 approved sensitive High Ovarian Cancer tissue and cell line (MDAH-2274, SKOV3)
hsa-miR-744-5p Gefitinib 123631 NSC715055 approved resistant High Lung Adenocarcinoma cell line (A549)
hsa-miR-744-5p Cisplatin 5460033 NSC119875 approved sensitive High Esophageal Squamous Cell Carcinoma cell line (KYSE410)
hsa-miR-744-5p Tamoxifen 2733525 NSC180973 approved sensitive High Breast Cancer cell line (MCF-7)
hsa-miR-744-5p Cisplatin 5460033 NSC119875 approved resistant High Non-Small Cell Lung Cancer cell line (A549)
hsa-miR-744-5p Vinorelbine 44424639 approved resistant High Breast Cancer cell line (MDA-MB-231)
hsa-miR-744-5p Epirubicin 41867 NSC256942 approved resistant High Breast Cancer cell line (MDA-MB-231)
hsa-miR-744-5p Erlotinib 176870 NSC718781 approved sensitive High Non-Small Cell Lung Cancer tissue
hsa-miR-744-5p Gefitinib 123631 NSC715055 approved sensitive High Non-Small Cell Lung Cancer tissue
hsa-miR-744-5p Sunitinib 5329102 NSC750690 approved sensitive High Renal Cell Cancer tissue
hsa-miR-744-5p Gemcitabine 60750 NSC613327 approved resistant High Pancreatic Cancer cell line (AsPC-1)
hsa-miR-744-5p Sorafenib 216239 NSC747971 approved sensitive Low Hepatocellular Carcinoma cell line (HepG2)
hsa-miR-744-5p Cisplatin 5460033 NSC119875 approved resistant High Gastric Cancer cell line (SGC-7901, BGC-823)
hsa-miR-744-5p Oxaliplatin 6857599 NSC266046 approved resistant Low Colorectal Cancer cell line (HCT-116)
hsa-miR-744-5p Bortezomib 387447 NSC681239 approved sensitive Low Multiple Myeloma tissue
hsa-miR-744-5p Cisplatin 5460033 NSC119875 approved resistant High Non-Small Cell Lung Cancer cell line (A549)
hsa-miR-744-5p Osimertinib 71496458 NSC779217 approved sensitive cell line (HCC827)
hsa-miR-744-5p Osimertinib 71496458 NSC779217 approved resistant cell line (PC9)
hsa-miR-744-5p Cisplatin 5460033 NSC119875 approved sensitive cell line (CAL-27) (cytosolic RNA)
hsa-miR-744-5p Doxorubicin 31703 NSC123127 approved sensitive cell line (HS578T)
hsa-miR-744-5p Cisplatin 5460033 NSC119875 approved resistant cell line (A549)
hsa-miR-744-5p Fluorouracil 3385 NSC19893 approved sensitive cell line (HCT15)
hsa-miR-744-5p 4-Hydroxytamoxifen+Tamoxifen sensitive cell line (LY2)
hsa-miR-744-5p Ethanol+Tamoxifen sensitive cell line (LY2)
hsa-miR-744-5p Methotrexate 126941 NSC740 approved resistant cell line (HT29)
hsa-miR-744-5p Fluorouracil 3385 NSC19893 approved resistant cell line (KM12C) (72 h)
hsa-miR-744-5p Cisplatin 5460033 NSC119875 approved resistant cell line (RPMI2650)
hsa-miR-744-5p Sunitinib 5329102 NSC750690 approved resistant tissue (CardA)
hsa-miR-744-5p Gemcitabine 60750 NSC613327 approved resistant cell line (MDA-231)
hsa-miR-744-5p Paclitaxel 36314 NSC125973 approved sensitive cell line (PC3PR20)
hsa-miR-744-5p Cisplatin 5460033 NSC119875 approved sensitive cell line (A549)
hsa-miR-744-5p Gemcitabine 60750 NSC613327 approved resistant cell line (PANC-1) (1500 ng/ml)
hsa-miR-744-5p Gemcitabine 60750 NSC613327 approved resistant cell line (Panc1-GR4)
hsa-miR-744-5p Ceritinib 57379345 NSC776422 approved resistant cell line (H3122)
hsa-miR-744-5p Cisplatin 5460033 NSC119875 approved sensitive cell line (H23)

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