pre-miRNA Information
pre-miRNA hsa-mir-744   
Genomic Coordinates chr17: 12081899 - 12081996
Synonyms MIRN744, hsa-mir-744, MIR744
Description Homo sapiens miR-744 stem-loop
Comment This sequence was identified as a miRNA candidate by Berezikov et al. using RAKE and MPSS techniques .
RNA Secondary Structure
Associated Diseases

Mature miRNA Information
Mature miRNA hsa-miR-744-5p
Sequence 11| UGCGGGGCUAGGGCUAACAGCA |32
Evidence Experimental
Experiments Cloned
DRVs in miRNA
Mutant ID Mutant Position Mutant Source
COSN23015028 1 COSMIC
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs557969425 1 dbSNP
rs748252260 4 dbSNP
rs1470408501 7 dbSNP
rs1178657616 10 dbSNP
Putative Targets

miRNA Expression profile
Human miRNA Tissue Atlas
miRNAs in Extracellular Vesicles
Circulating MicroRNA Expression Profiling
Biomarker Information
Biomarker ID Name Type Discovered From Mode Level Source Testing Methods
B6B8SM miR-744-5p Safety Biomarker (SAF) Clinical/Experimental Data Expression Increase Urine Real-time polymerase chain reaction
Gene Information
Gene Symbol FKBP4   
Synonyms FKBP51, FKBP52, FKBP59, HBI, Hsp56, PPIase, p52
Description FK506 binding protein 4
Transcript NM_002014   
Expression
Putative miRNA Targets on FKBP4
3'UTR of FKBP4
(miRNA target sites are highlighted)
>FKBP4|NM_002014|3'UTR
   1 CCCCTCTCCACCAGCCCTACTCCTGCGGCTGCCTGCCCCCCAGTCTCCCCACTCCACCCTGTTAGTTTTGTAAAAACTGA
  81 AGAATTTTGAGTGAATTAGACCTTTATTTTTCTATCTGGTTGGATGGTGGCTTTAGGGGAAGGGGGAAAGGTGTAGGCTG
 161 GGGGATTGAGGTGGGGAATCATTTTAGCTGGTGTCAGCCCCTCTTCCCTTCCTCCATTGCACATGAACATATGTCCATCC
 241 ATATATATTCATCAGAATGTTAATTTATTTTGCTCCCTCTGTTAGGTCCATTTTCTAAGGGTAGAAGAGGCAAGTGGTAG
 321 GGATGAGGTCTGATAAGAACCCAGGGTGGAGAGGGAGACTCCTGGGCAGCCGTTTTCCTCATCCTTTCCCTCTCCCAGTC
 401 CATTTCCAAATGTGGCCTCCATGTGGGTGCTAGGGACATGGGAAAAACCACTGCTATGCCATTTCTTCTCTCTGTTCCCT
 481 TCCTCACCCCCGACGGTGTGGCTGATGATGTCTTCTGGTGTCATGGTGACCACCCCCTGTTCCCTGTTCTGGTATTTCCC
 561 CTGTCAGTTTCCCCTCTCGGCCAGGTTGTGTCCCAAAATCCCCTCAGCCTCTTCTCTGCACGTTGCTGAAGGTCCAGGCT
 641 TGCCTCAAGTTCCATGCTTGAGCAATAAAGTGGAAACAATAAAACCTGGGTGTCAGACAACCCTTTCTGTTCAGCCTTGG
 721 AGTGGTGGGTATGGGTGGGTACATAATGGGTAGTAGCACAATCAAGGGGTCACCCACTTAGTTCCAGTTGAGCTTAAATA
 801 AGTGAGCATCTCATGTAGATGCCATAGTTGGGCAGGAAGCAGCCCCACCATGCATGGCTTCCTGAGCACTGCACAGGCTG
 881 CCGCTGGGATTTGTGTCTATGGCTTCGCCCAAGGTTCCCAGCACTCCCTCCCTCCAGCAACCTGGCAGTTTTAGTGCCTC
 961 TGGTTTTCTTCCCTGACACTTAGGAAGACGAAAGTATAAAGATCTAGAAGACTGGGACACCATGCATGTTCATTTTGAAG
1041 TTGGAATTGGTCTTCTGCCTACCTCTGATCTGGCAGAGGTATCTGCATTTTGGTTTGTTAACAAGGTAAAACTCCTGGTG
1121 TCACTGACCTCCTCCTGTCAGATAACTTACATGATTAAGGTTAAGAGTAAAGCAGAGTGTTCACGTCCAGCTTCCTTCTC
1201 AGCCTTAACAGGAAAAGGCTTGTGCTTTTTTTCTAACTATGCTTTGACCCTTAACTCCTATGGCATGATGGGGCCCTGGG
1281 AGAAGCCAGGCAGCACAAGCCAGTCATGCTGAGCTGCCTCCAGATAATCCTGGCTCCAGGCCAGAGCCCGTGTCTGCCCT
1361 CATCCCTCTCTCCTACTGTGAGCTCTCCAGTCCTTTCCCAACAGCGATGTGGTTGTCTGCTTAGCCACATGCCTGTATAG
1441 TTCCTTCCAGAAGAAATGTATAATGGTGGAAGATGTATTTCTGTGTGAAAATTTTCACCAAGTCATACAACACAGCTGAT
1521 GCTGGAGCCAGGATTAAAATTGGGGTGTACAAGTCTCCCAGTGTGAGTATCCCTTGAGCCCAAGACACCAAGGATGCAGA
1601 GAACTGTGACTGTGCCACTGCACGCCAGCCTGGGCAAGAGAGTGAGACCATCTCTTTTTTAAAAAAGTCCCTGTGTAACT
1681 GCTTTCTTACTGGGCTTACCTCACATCACAGCCCTGTGTTTGTGGTTTGTGTCTGGGTCCTCTTGGTATTTCAAAAGTAG
1761 TAGATTCTTACGCCTGCAGCCAACAATAATCACTAACTCAAGCATTTATGGAGTAAGCCTAGCACTGTACTGACAGCATC
1841 ACATGAGTGAAACTGAATCCTTGCAACCATCCTACAAAGAAGGTATAACTTTAATAACCCTATTTACAGATAAGAAAACC
1921 AAGACTCAGAAGTTAAATGGAAAGGTGAGGTCTCTGAACTAATCCAGACTCTCCCATGAGGTTCCTTTGGCAAGTCCTGG
2001 GCTTCTGTCCTCATCTGCAAAATCGAAAGCATTCCTGAGGTTTCTTCCAGCTCTGCATCCTGTAGGATTCCAAGAATGTA
2081 AAACTGCATGTAACCGTGGAACATCTAGAGATAAGTCTTAGTTTATGTAACATTAAAACTGTCTAGTGAGGATGTTTTGT
2161 TAAAAAAAAAAAAAAAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' acgaCAAUCGGGAUCGGGGCGu 5'
              |||  ::| |||:|:|| 
Target 5' tgagGTTTCTTCCAGCTCTGCa 3'
2036 - 2057 126.00 -19.00
2
miRNA  3' acgACAAUCGG----GAUCGGGGCGu 5'
             | |||||:    : |||||| | 
Target 5' tcaTTTTAGCTGGTGTCAGCCCCTCt 3'
179 - 204 125.00 -18.10
3
miRNA  3' acGACAAUCGGG-AUCGGGGCGu 5'
            :|||  |:|: |:||::||| 
Target 5' atTTGT--GTCTATGGCTTCGCc 3'
889 - 909 124.00 -14.50
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN26555325 365 COSMIC
COSN15827963 390 COSMIC
COSN31584299 466 COSMIC
COSN31535515 490 COSMIC
COSN31556578 504 COSMIC
COSN31588412 609 COSMIC
COSN26556498 633 COSMIC
COSN19493984 661 COSMIC
COSN20109073 805 COSMIC
COSN8585923 836 COSMIC
COSN17078501 884 COSMIC
COSN28893779 1347 COSMIC
COSN30662726 1981 COSMIC
COSN30546860 2079 COSMIC
COSN9747789 2084 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs773954350 1 dbSNP
rs1305245841 2 dbSNP
rs1236280539 10 dbSNP
rs745676560 13 dbSNP
rs1307234968 17 dbSNP
rs373346391 20 dbSNP
rs11548612 27 dbSNP
rs760730381 28 dbSNP
rs547678038 32 dbSNP
rs768038200 36 dbSNP
rs768027685 37 dbSNP
rs1212514113 40 dbSNP
rs373364321 41 dbSNP
rs761366011 42 dbSNP
rs764945892 44 dbSNP
rs1803818 46 dbSNP
rs918974677 48 dbSNP
rs759915682 49 dbSNP
rs930136468 51 dbSNP
rs776413239 52 dbSNP
rs1459541910 53 dbSNP
rs1042261 57 dbSNP
rs1369206578 58 dbSNP
rs1164500633 60 dbSNP
rs1257659794 61 dbSNP
rs1048534403 62 dbSNP
rs1415444489 71 dbSNP
rs1195722190 79 dbSNP
rs1188463506 83 dbSNP
rs888710147 85 dbSNP
rs1260994333 86 dbSNP
rs1202783092 92 dbSNP
rs948320054 105 dbSNP
rs1273412459 113 dbSNP
rs1451675131 117 dbSNP
rs549884979 126 dbSNP
rs1212759490 127 dbSNP
rs73050594 132 dbSNP
rs906541666 135 dbSNP
rs192814328 143 dbSNP
rs1033256354 145 dbSNP
rs1003616691 147 dbSNP
rs538735382 148 dbSNP
rs1031054610 150 dbSNP
rs892512678 151 dbSNP
rs558770809 154 dbSNP
rs1022115123 158 dbSNP
rs1402982335 160 dbSNP
rs1460114004 173 dbSNP
rs1007728865 176 dbSNP
rs1172500895 191 dbSNP
rs1475621113 193 dbSNP
rs1434528615 202 dbSNP
rs1296741308 203 dbSNP
rs1191004581 208 dbSNP
rs953441760 209 dbSNP
rs1362977738 212 dbSNP
rs184572826 224 dbSNP
rs1230274660 230 dbSNP
rs534872952 233 dbSNP
rs1018654061 237 dbSNP
rs116790819 240 dbSNP
rs965700800 242 dbSNP
rs1196684107 244 dbSNP
rs971682595 245 dbSNP
rs919029847 251 dbSNP
rs575012495 254 dbSNP
rs1339157182 258 dbSNP
rs761914358 259 dbSNP
rs1236117578 261 dbSNP
rs1371786061 263 dbSNP
rs1302696674 273 dbSNP
rs542642171 274 dbSNP
rs1207574655 276 dbSNP
rs188311232 277 dbSNP
rs1329805540 280 dbSNP
rs918866065 282 dbSNP
rs1395592794 291 dbSNP
rs984726216 301 dbSNP
rs1166059616 311 dbSNP
rs1467566597 312 dbSNP
rs1395639029 315 dbSNP
rs1192422169 319 dbSNP
rs910035895 321 dbSNP
rs377039988 324 dbSNP
rs1182157104 329 dbSNP
rs1437574429 337 dbSNP
rs1248920061 343 dbSNP
rs1207595513 350 dbSNP
rs910035242 367 dbSNP
rs1045282289 370 dbSNP
rs906761254 372 dbSNP
rs1280248020 373 dbSNP
rs1232104109 385 dbSNP
rs11548613 386 dbSNP
rs768151468 390 dbSNP
rs1280352904 392 dbSNP
rs1052356992 396 dbSNP
rs1334928439 401 dbSNP
rs1416424296 402 dbSNP
rs917316500 402 dbSNP
rs1424900910 403 dbSNP
rs1375923715 405 dbSNP
rs1172956581 416 dbSNP
rs1432315356 417 dbSNP
rs1803819 419 dbSNP
rs11548611 420 dbSNP
rs750849959 421 dbSNP
rs1158762574 430 dbSNP
rs1469262434 436 dbSNP
rs750910699 439 dbSNP
rs761151670 441 dbSNP
rs1010972798 449 dbSNP
rs1431856625 450 dbSNP
rs1022586860 452 dbSNP
rs1257416249 453 dbSNP
rs1378468383 455 dbSNP
rs1456737313 457 dbSNP
rs1209433937 462 dbSNP
rs538782297 462 dbSNP
rs766818387 467 dbSNP
rs1386288772 470 dbSNP
rs1007363484 472 dbSNP
rs1437190499 473 dbSNP
rs796124146 476 dbSNP
rs1018873608 488 dbSNP
rs551007781 492 dbSNP
rs971738251 493 dbSNP
rs1289437643 495 dbSNP
rs1000511894 496 dbSNP
rs758536303 498 dbSNP
rs1217309451 502 dbSNP
rs1312198691 503 dbSNP
rs1025969080 508 dbSNP
rs1054345407 513 dbSNP
rs1346915266 514 dbSNP
rs888948726 516 dbSNP
rs1399617597 525 dbSNP
rs951912476 528 dbSNP
rs192839371 529 dbSNP
rs984556498 531 dbSNP
rs1302907187 534 dbSNP
rs374692001 537 dbSNP
rs534905546 537 dbSNP
rs1803816 538 dbSNP
rs1417644722 539 dbSNP
rs965752147 541 dbSNP
rs1479061128 542 dbSNP
rs969592171 547 dbSNP
rs1803815 549 dbSNP
rs754575471 550 dbSNP
rs980867742 553 dbSNP
rs1323838465 561 dbSNP
rs1214629313 568 dbSNP
rs1335206536 569 dbSNP
rs1231257097 572 dbSNP
rs184417998 572 dbSNP
rs928238387 573 dbSNP
rs1270707840 574 dbSNP
rs564931982 574 dbSNP
rs760995625 577 dbSNP
rs951697941 580 dbSNP
rs939590950 585 dbSNP
rs568922742 586 dbSNP
rs1393307376 587 dbSNP
rs780392478 588 dbSNP
rs752154157 597 dbSNP
rs1420777864 601 dbSNP
rs116573718 602 dbSNP
rs959147098 603 dbSNP
rs1043823881 604 dbSNP
rs1042536 612 dbSNP
rs991627875 615 dbSNP
rs1468168979 622 dbSNP
rs777715242 623 dbSNP
rs746995908 640 dbSNP
rs1211525964 655 dbSNP
rs1487692121 661 dbSNP
rs917367488 665 dbSNP
rs1193315646 670 dbSNP
rs1007415819 673 dbSNP
rs746911480 674 dbSNP
rs540839897 679 dbSNP
rs901791561 680 dbSNP
rs1304931005 685 dbSNP
rs561263842 690 dbSNP
rs1472392278 697 dbSNP
rs977453520 698 dbSNP
rs1323498013 699 dbSNP
rs1463842954 730 dbSNP
rs1355549786 739 dbSNP
rs1170327104 745 dbSNP
rs529929225 756 dbSNP
rs1397457981 765 dbSNP
rs924614343 770 dbSNP
rs545230990 773 dbSNP
rs1251357836 774 dbSNP
rs1179240072 775 dbSNP
rs549800744 776 dbSNP
rs993398201 783 dbSNP
rs1026440957 789 dbSNP
rs1349261073 791 dbSNP
rs1339928690 793 dbSNP
rs889007499 798 dbSNP
rs1234310602 799 dbSNP
rs1371941145 800 dbSNP
rs951737495 801 dbSNP
rs35667665 805 dbSNP
rs63567861 806 dbSNP
rs569709847 807 dbSNP
rs1006267587 815 dbSNP
rs189052389 816 dbSNP
rs1392817095 822 dbSNP
rs552271749 823 dbSNP
rs1374487830 834 dbSNP
rs770756213 840 dbSNP
rs1345675894 842 dbSNP
rs113028857 852 dbSNP
rs566013754 864 dbSNP
rs1174877893 867 dbSNP
rs1434177342 868 dbSNP
rs1393389287 873 dbSNP
rs1286135903 879 dbSNP
rs1330575862 883 dbSNP
rs1223890808 884 dbSNP
rs1407571696 896 dbSNP
rs1176345032 898 dbSNP
rs535252459 899 dbSNP
rs1289742012 900 dbSNP
rs1320464498 907 dbSNP
rs1224160871 908 dbSNP
rs1485042346 913 dbSNP
rs1253793902 918 dbSNP
rs1292963798 920 dbSNP
rs1240593739 932 dbSNP
rs1482970209 945 dbSNP
rs1317065587 949 dbSNP
rs1305866035 952 dbSNP
rs1222408503 965 dbSNP
rs115558944 971 dbSNP
rs928117241 974 dbSNP
rs781230211 977 dbSNP
rs371056112 980 dbSNP
rs960984258 985 dbSNP
rs887444698 990 dbSNP
rs1290669237 997 dbSNP
rs1454379170 1004 dbSNP
rs1344773518 1013 dbSNP
rs1157272247 1015 dbSNP
rs1005863251 1017 dbSNP
rs1419815070 1024 dbSNP
rs1017618338 1025 dbSNP
rs1474813980 1027 dbSNP
rs1253998291 1033 dbSNP
rs958974127 1044 dbSNP
rs1485940439 1045 dbSNP
rs1259777544 1053 dbSNP
rs114972788 1057 dbSNP
rs914103342 1060 dbSNP
rs1294238480 1062 dbSNP
rs946739224 1063 dbSNP
rs971520853 1066 dbSNP
rs1339156623 1070 dbSNP
rs1044092452 1079 dbSNP
rs910649419 1080 dbSNP
rs1287304910 1102 dbSNP
rs943422671 1107 dbSNP
rs1463260786 1113 dbSNP
rs1395526636 1128 dbSNP
rs1040256537 1129 dbSNP
rs901676885 1131 dbSNP
rs780833524 1132 dbSNP
rs749588231 1133 dbSNP
rs575891939 1136 dbSNP
rs537341606 1143 dbSNP
rs1428925205 1145 dbSNP
rs759693510 1149 dbSNP
rs768761580 1153 dbSNP
rs774574309 1157 dbSNP
rs1428559537 1161 dbSNP
rs1260489790 1166 dbSNP
rs533247397 1168 dbSNP
rs1469500534 1178 dbSNP
rs1442236219 1179 dbSNP
rs924694910 1183 dbSNP
rs181831854 1186 dbSNP
rs990151511 1188 dbSNP
rs1253594090 1202 dbSNP
rs1005904192 1210 dbSNP
rs1228847845 1213 dbSNP
rs1023025988 1223 dbSNP
rs1325911969 1226 dbSNP
rs1295440581 1229 dbSNP
rs969802491 1231 dbSNP
rs1371923105 1234 dbSNP
rs910481811 1234 dbSNP
rs184847726 1240 dbSNP
rs943289143 1243 dbSNP
rs1203494123 1251 dbSNP
rs762006283 1252 dbSNP
rs1276984562 1253 dbSNP
rs1438625953 1254 dbSNP
rs1035184128 1255 dbSNP
rs1166103057 1256 dbSNP
rs1209427576 1257 dbSNP
rs1253226097 1257 dbSNP
rs1235802424 1258 dbSNP
rs960867966 1261 dbSNP
rs1253168615 1262 dbSNP
rs1185325023 1264 dbSNP
rs1040221463 1267 dbSNP
rs1273116865 1275 dbSNP
rs1236566189 1278 dbSNP
rs558706077 1283 dbSNP
rs901694349 1284 dbSNP
rs988672669 1292 dbSNP
rs913952949 1297 dbSNP
rs1385830540 1299 dbSNP
rs1021223574 1302 dbSNP
rs1047488334 1303 dbSNP
rs1166507864 1308 dbSNP
rs1330591491 1315 dbSNP
rs1391764506 1326 dbSNP
rs968674518 1329 dbSNP
rs887507218 1334 dbSNP
rs1436039347 1339 dbSNP
rs1395202336 1340 dbSNP
rs1410184320 1343 dbSNP
rs772235752 1347 dbSNP
rs1333168342 1350 dbSNP
rs189160791 1351 dbSNP
rs1182902894 1353 dbSNP
rs147917740 1357 dbSNP
rs943475094 1358 dbSNP
rs976159560 1367 dbSNP
rs1213687610 1373 dbSNP
rs1316300923 1377 dbSNP
rs1279635209 1378 dbSNP
rs1425569776 1391 dbSNP
rs1033333563 1401 dbSNP
rs773894612 1406 dbSNP
rs1239486698 1407 dbSNP
rs1349716577 1409 dbSNP
rs1286349670 1412 dbSNP
rs1416598035 1421 dbSNP
rs1376021070 1426 dbSNP
rs1013181951 1434 dbSNP
rs1340585180 1447 dbSNP
rs1412269382 1454 dbSNP
rs761242104 1458 dbSNP
rs560913435 1459 dbSNP
rs1386611057 1460 dbSNP
rs1158848365 1461 dbSNP
rs766826989 1466 dbSNP
rs1218855418 1468 dbSNP
rs1047997199 1470 dbSNP
rs1276836404 1472 dbSNP
rs887714656 1475 dbSNP
rs941921906 1478 dbSNP
rs1444169268 1484 dbSNP
rs1204419926 1492 dbSNP
rs1044107002 1495 dbSNP
rs1243627705 1509 dbSNP
rs1475796744 1510 dbSNP
rs905528325 1514 dbSNP
rs1464396612 1542 dbSNP
rs530047224 1547 dbSNP
rs1374575848 1548 dbSNP
rs1399776103 1555 dbSNP
rs1475650412 1558 dbSNP
rs1171613661 1579 dbSNP
rs140555830 1581 dbSNP
rs1283545006 1582 dbSNP
rs1355938165 1582 dbSNP
rs891520749 1585 dbSNP
rs977556194 1593 dbSNP
rs1470644538 1594 dbSNP
rs1009748390 1595 dbSNP
rs563209035 1600 dbSNP
rs1167501207 1602 dbSNP
rs1462315867 1603 dbSNP
rs1388467488 1611 dbSNP
rs537827098 1618 dbSNP
rs1180665492 1622 dbSNP
rs968354217 1624 dbSNP
rs980092019 1625 dbSNP
rs1463656503 1626 dbSNP
rs1017653917 1639 dbSNP
rs1275314903 1643 dbSNP
rs1215276660 1645 dbSNP
rs759531462 1651 dbSNP
rs910547975 1651 dbSNP
rs964651042 1661 dbSNP
rs1327367390 1665 dbSNP
rs1270207803 1673 dbSNP
rs1436259321 1674 dbSNP
rs975975504 1681 dbSNP
rs552133150 1691 dbSNP
rs759879359 1700 dbSNP
rs1224136529 1714 dbSNP
rs559834421 1716 dbSNP
rs923368432 1723 dbSNP
rs1412075679 1726 dbSNP
rs1327238125 1728 dbSNP
rs764814680 1730 dbSNP
rs572830281 1743 dbSNP
rs11062360 1745 dbSNP
rs983333903 1748 dbSNP
rs115690712 1766 dbSNP
rs1447753451 1767 dbSNP
rs758829135 1770 dbSNP
rs568564721 1772 dbSNP
rs1245858562 1773 dbSNP
rs180940465 1775 dbSNP
rs546884532 1775 dbSNP
rs1273659003 1800 dbSNP
rs1481218340 1800 dbSNP
rs1226998717 1808 dbSNP
rs1176793981 1810 dbSNP
rs1410568956 1819 dbSNP
rs1305170656 1822 dbSNP
rs1455234226 1826 dbSNP
rs1044297818 1828 dbSNP
rs1366485113 1831 dbSNP
rs1292078444 1839 dbSNP
rs1444850849 1843 dbSNP
rs1355570783 1844 dbSNP
rs1308012437 1853 dbSNP
rs1055248607 1857 dbSNP
rs1397034635 1858 dbSNP
rs1160768394 1860 dbSNP
rs1432755233 1861 dbSNP
rs1423364650 1865 dbSNP
rs894813177 1866 dbSNP
rs1460127989 1872 dbSNP
rs1013232712 1875 dbSNP
rs1046025296 1876 dbSNP
rs764561537 1877 dbSNP
rs1446589846 1879 dbSNP
rs367879686 1884 dbSNP
rs1438746119 1886 dbSNP
rs1287577838 1887 dbSNP
rs1281770326 1893 dbSNP
rs1361881743 1895 dbSNP
rs551310220 1907 dbSNP
rs1400918439 1908 dbSNP
rs907439660 1918 dbSNP
rs767909925 1921 dbSNP
rs753181144 1929 dbSNP
rs1374554671 1933 dbSNP
rs1232350601 1934 dbSNP
rs1288259243 1950 dbSNP
rs1255169630 1953 dbSNP
rs1289934273 1957 dbSNP
rs1408479902 1958 dbSNP
rs905749603 1964 dbSNP
rs1454758336 1965 dbSNP
rs1193146731 1968 dbSNP
rs999045550 1968 dbSNP
rs1322947585 1969 dbSNP
rs1213053608 1972 dbSNP
rs1241383048 1973 dbSNP
rs376403617 1977 dbSNP
rs1412512444 1986 dbSNP
rs150053131 1991 dbSNP
rs1011672120 1993 dbSNP
rs1018068754 1995 dbSNP
rs891574514 1997 dbSNP
rs558571891 2013 dbSNP
rs540298910 2014 dbSNP
rs976027697 2019 dbSNP
rs1021164497 2020 dbSNP
rs904014194 2025 dbSNP
rs1040205766 2026 dbSNP
rs1490796121 2036 dbSNP
rs1001009287 2051 dbSNP
rs145419832 2052 dbSNP
rs1226979291 2066 dbSNP
rs1357863554 2089 dbSNP
rs757937647 2096 dbSNP
rs534414404 2097 dbSNP
rs964935437 2108 dbSNP
rs554601340 2113 dbSNP
rs763566918 2114 dbSNP
rs1377154998 2115 dbSNP
rs983729392 2126 dbSNP
rs186212244 2127 dbSNP
rs1364819680 2128 dbSNP
rs1457845600 2144 dbSNP
rs574553711 2146 dbSNP
rs1419910827 2148 dbSNP
rs1030324769 2151 dbSNP
rs189928574 2153 dbSNP
rs950867441 2161 dbSNP
rs1162046033 2165 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
     
Conditions Flp-In T-REx 293-hAGO1 cells
Location of target site CDS
Original Description (Extracted from the article) ... Validation of interactions identified by CLASH suppports their reliability. ...

- Helwak A; Kudla G; Dudnakova T; Tollervey D, 2013, Cell.

Article - Helwak A; Kudla G; Dudnakova T; Tollervey D
- Cell, 2013
MicroRNAs (miRNAs) play key roles in gene regulation, but reliable bioinformatic or experimental identification of their targets remains difficult. To provide an unbiased view of human miRNA targets, we developed a technique for ligation and sequencing of miRNA-target RNA duplexes associated with human AGO1. Here, we report data sets of more than 18,000 high-confidence miRNA-mRNA interactions. The binding of most miRNAs includes the 5' seed region, but around 60% of seed interactions are noncanonical, containing bulged or mismatched nucleotides. Moreover, seed interactions are generally accompanied by specific, nonseed base pairing. 18% of miRNA-mRNA interactions involve the miRNA 3' end, with little evidence for 5' contacts, and some of these were functionally validated. Analyses of miRNA:mRNA base pairing showed that miRNA species systematically differ in their target RNA interactions, and strongly overrepresented motifs were found in the interaction sites of several miRNAs. We speculate that these affect the response of RISC to miRNA-target binding.
LinkOut: [PMID: 23622248]
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
GSE34608 Pulmonary tuberculosis and sarcoidosis -0.755 6.0e-5 -0.883 1.3e-7 20 Click to see details
GSE42095 Differentiated embryonic stem cells -0.627 6.8e-4 -0.626 7.0e-4 23 Click to see details
GSE26953 Aortic valvular endothelial cells -0.5 6.4e-3 -0.614 7.1e-4 24 Click to see details
GSE19350 CNS germ cell tumors -0.55 3.2e-2 -0.594 2.1e-2 12 Click to see details
GSE15076 Monocyte-derived dendritic cells -0.594 4.6e-2 -0.517 7.7e-2 9 Click to see details
GSE21032 Prostate cancer 0.161 7.3e-2 0.154 8.2e-2 83 Click to see details
GSE21687 Ependynoma primary tumors -0.161 1.0e-1 -0.173 8.6e-2 64 Click to see details
GSE35602 Colorectal cancer stromal tissue 0.236 1.3e-1 0.430 1.6e-2 25 Click to see details
GSE19536 Breast cancer 0.1 1.6e-1 0.140 8.2e-2 100 Click to see details
GSE19783 ER- ER- breast cancer 0.112 1.6e-1 0.109 1.7e-1 79 Click to see details
GSE32688 Pancreatic cancer 0.174 1.7e-1 0.237 9.6e-2 32 Click to see details
GSE38226 Liver fibrosis 0.161 2.4e-1 0.242 1.5e-1 21 Click to see details
GSE28260 Renal cortex and medulla -0.144 3.2e-1 -0.236 2.2e-1 13 Click to see details
GSE28544 Breast cancer 0.08 3.6e-1 -0.053 4.0e-1 24 Click to see details
GSE17498 Multiple myeloma 0.036 4.1e-1 0.061 3.5e-1 40 Click to see details
GSE38974 Chronic obstructive pulmonary disease -0.013 4.8e-1 -0.144 2.5e-1 25 Click to see details
GSE19783 ER+ ER+ breast cancer -0.013 4.8e-1 0.150 2.6e-1 20 Click to see details
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
BRCA 0.283 0 0.283 0 84 Click to see details
STAD 0.434 0.01 0.449 0 32 Click to see details
LUSC 0.38 0.01 0.398 0.01 38 Click to see details
PAAD -0.967 0.02 -0.800 0.1 4 Click to see details
HNSC 0.325 0.02 0.305 0.02 42 Click to see details
KICH -0.388 0.03 -0.432 0.02 25 Click to see details
PCPG 0.981 0.06 1.000 0.5 3 Click to see details
KIRC 0.184 0.07 0.137 0.13 68 Click to see details
BLCA 0.31 0.11 0.226 0.18 18 Click to see details
PRAD 0.174 0.11 0.289 0.02 50 Click to see details
CESC -0.929 0.12 -0.500 0.33 3 Click to see details
CHOL 0.406 0.14 0.217 0.29 9 Click to see details
KIRP 0.166 0.18 0.115 0.27 32 Click to see details
ESCA 0.291 0.19 0.264 0.22 11 Click to see details
THCA 0.112 0.2 0.038 0.39 59 Click to see details
UCEC -0.201 0.2 -0.398 0.05 19 Click to see details
COAD -0.334 0.21 -0.476 0.12 8 Click to see details
LIHC -0.094 0.26 -0.089 0.27 49 Click to see details
LUAD 0.027 0.47 0.042 0.45 12 Click to see details
LUAD 0.027 0.47 0.042 0.45 12 Click to see details
LUAD 0.027 0.47 0.042 0.45 12 Click to see details
412 hsa-miR-744-5p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT016085 ARL15 ADP ribosylation factor like GTPase 15 1 1
MIRT016086 AGPAT3 1-acylglycerol-3-phosphate O-acyltransferase 3 1 2
MIRT016087 PPTC7 PTC7 protein phosphatase homolog 2 3
MIRT016088 RASSF1 Ras association domain family member 1 1 1
MIRT016089 IER5 immediate early response 5 1 1
MIRT037383 UFC1 ubiquitin-fold modifier conjugating enzyme 1 1 1
MIRT037384 STAM2 signal transducing adaptor molecule 2 1 1
MIRT037385 SRRM2 serine/arginine repetitive matrix 2 1 1
MIRT037386 DCXR dicarbonyl and L-xylulose reductase 1 1
MIRT037387 TSPAN17 tetraspanin 17 1 1
MIRT037388 ACTB actin beta 1 1
MIRT037389 HIST1H2BC histone cluster 1 H2B family member c 1 1
MIRT037390 ATP5B ATP synthase, H+ transporting, mitochondrial F1 complex, beta polypeptide 1 1
MIRT037391 VDAC1 voltage dependent anion channel 1 1 1
MIRT037392 RNASEK ribonuclease K 1 1
MIRT037393 CDK16 cyclin dependent kinase 16 1 1
MIRT037394 ZCCHC24 zinc finger CCHC-type containing 24 1 1
MIRT037395 ARRDC2 arrestin domain containing 2 1 1
MIRT037396 SGMS1 sphingomyelin synthase 1 1 1
MIRT037397 HSPD1 heat shock protein family D (Hsp60) member 1 1 1
MIRT037398 MRPL46 mitochondrial ribosomal protein L46 1 1
MIRT037399 RHEB Ras homolog, mTORC1 binding 1 1
MIRT037400 ND1 NADH dehydrogenase, subunit 1 (complex I) 1 1
MIRT037401 TP53I13 tumor protein p53 inducible protein 13 1 1
MIRT037402 CD44 CD44 molecule (Indian blood group) 1 1
MIRT037403 USP12 ubiquitin specific peptidase 12 1 1
MIRT037404 AP2B1 adaptor related protein complex 2 beta 1 subunit 1 1
MIRT037405 RPL18A ribosomal protein L18a 1 1
MIRT037406 PPP1CA protein phosphatase 1 catalytic subunit alpha 1 1
MIRT037407 TNRC6B trinucleotide repeat containing 6B 1 1
MIRT037408 PXK PX domain containing serine/threonine kinase like 1 1
MIRT037409 TDRKH tudor and KH domain containing 1 1
MIRT037410 PRRC2A proline rich coiled-coil 2A 1 1
MIRT037411 ATP11A ATPase phospholipid transporting 11A 1 1
MIRT037412 NDE1 nudE neurodevelopment protein 1 1 1
MIRT037413 STK16 serine/threonine kinase 16 1 1
MIRT037414 PSMB2 proteasome subunit beta 2 1 1
MIRT037415 EPN1 epsin 1 1 1
MIRT037416 EN2 engrailed homeobox 2 1 1
MIRT037417 LARP1 La ribonucleoprotein domain family member 1 1 1
MIRT037418 SRCAP Snf2 related CREBBP activator protein 1 1
MIRT037419 SMARCD1 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1 1 1
MIRT037420 AP2A2 adaptor related protein complex 2 alpha 2 subunit 1 1
MIRT037421 ACTG1 actin gamma 1 1 1
MIRT037422 PIKFYVE phosphoinositide kinase, FYVE-type zinc finger containing 1 1
MIRT037423 UBE2O ubiquitin conjugating enzyme E2 O 1 1
MIRT037424 KLHL15 kelch like family member 15 1 1
MIRT037425 SECISBP2 SECIS binding protein 2 1 1
MIRT037426 KIAA0922 transmembrane 131 like 1 1
MIRT037427 PTMA prothymosin, alpha 1 1
MIRT037428 WDR45B WD repeat domain 45B 1 1
MIRT037429 ZNF282 zinc finger protein 282 1 1
MIRT037430 GART phosphoribosylglycinamide formyltransferase, phosphoribosylglycinamide synthetase, phosphoribosylaminoimidazole synthetase 1 1
MIRT037431 TNKS tankyrase 1 1
MIRT037432 NOP2 NOP2 nucleolar protein 1 1
MIRT037433 GAK cyclin G associated kinase 1 1
MIRT037434 ATP6 ATP synthase F0 subunit 6 1 1
MIRT037435 DIDO1 death inducer-obliterator 1 1 1
MIRT037436 RPL3 ribosomal protein L3 1 1
MIRT037437 AIMP2 aminoacyl tRNA synthetase complex interacting multifunctional protein 2 1 1
MIRT037438 PIGC phosphatidylinositol glycan anchor biosynthesis class C 1 1
MIRT037439 ARHGEF2 Rho/Rac guanine nucleotide exchange factor 2 1 1
MIRT037440 USP21 ubiquitin specific peptidase 21 1 1
MIRT037441 NUFIP2 NUFIP2, FMR1 interacting protein 2 1 1
MIRT037442 RPS6 ribosomal protein S6 1 1
MIRT037443 ILKAP ILK associated serine/threonine phosphatase 1 1
MIRT037444 COX1 cytochrome c oxidase subunit I 1 1
MIRT037445 VPS37C VPS37C, ESCRT-I subunit 1 1
MIRT037446 CDK12 cyclin dependent kinase 12 1 1
MIRT037447 RBM8A RNA binding motif protein 8A 1 1
MIRT037448 CKB creatine kinase B 1 1
MIRT037449 DHX57 DExH-box helicase 57 1 1
MIRT037450 DDX23 DEAD-box helicase 23 1 1
MIRT037451 ABI3 ABI family member 3 1 1
MIRT037452 GATAD2B GATA zinc finger domain containing 2B 1 1
MIRT037453 PDPK1 3-phosphoinositide dependent protein kinase 1 1 1
MIRT037454 C17orf70 Fanconi anemia core complex associated protein 100 1 1
MIRT037455 SKI SKI proto-oncogene 1 1
MIRT037456 KCTD11 potassium channel tetramerization domain containing 11 1 1
MIRT037457 GNB2L1 receptor for activated C kinase 1 1 1
MIRT037458 NCOA3 nuclear receptor coactivator 3 1 1
MIRT037459 PAK4 p21 (RAC1) activated kinase 4 2 3
MIRT037460 GDI2 GDP dissociation inhibitor 2 1 1
MIRT037461 SLC2A4RG SLC2A4 regulator 1 1
MIRT037462 SLX4 SLX4 structure-specific endonuclease subunit 1 1
MIRT037463 COPA coatomer protein complex subunit alpha 1 1
MIRT037464 GPRASP2 G protein-coupled receptor associated sorting protein 2 1 1
MIRT037465 GGA3 golgi associated, gamma adaptin ear containing, ARF binding protein 3 1 1
MIRT037466 LIMS1 LIM zinc finger domain containing 1 1 1
MIRT037467 COTL1 coactosin like F-actin binding protein 1 1 1
MIRT037468 CAPNS1 calpain small subunit 1 1 1
MIRT037469 FRZB frizzled-related protein 1 1
MIRT037470 UBQLN4 ubiquilin 4 1 1
MIRT037471 NUP153 nucleoporin 153 1 1
MIRT037472 TMEM175 transmembrane protein 175 1 1
MIRT037473 HIST1H2BD histone cluster 1 H2B family member d 1 1
MIRT037474 SREBF1 sterol regulatory element binding transcription factor 1 1 1
MIRT037475 BCL2L12 BCL2 like 12 1 1
MIRT037476 HIST2H2AA3 histone cluster 2 H2A family member a3 1 1
MIRT037477 MINK1 misshapen like kinase 1 1 1
MIRT037478 PDXK pyridoxal kinase 1 1
MIRT037479 FAM110A family with sequence similarity 110 member A 1 1
MIRT037480 ZNF598 zinc finger protein 598 1 1
MIRT037481 ILK integrin linked kinase 1 1
MIRT037482 HINT1 histidine triad nucleotide binding protein 1 1 1
MIRT037483 WBP2 WW domain binding protein 2 1 1
MIRT037484 CYTB cytochrome b 1 1
MIRT037485 SCAMP2 secretory carrier membrane protein 2 1 1
MIRT037486 TRIM33 tripartite motif containing 33 1 1
MIRT037487 SLC25A3 solute carrier family 25 member 3 1 1
MIRT037488 IRS4 insulin receptor substrate 4 1 1
MIRT037489 TSR1 TSR1, ribosome maturation factor 1 1
MIRT037490 TCOF1 treacle ribosome biogenesis factor 1 1 1
MIRT037491 ATXN2L ataxin 2 like 1 1
MIRT037492 MTOR mechanistic target of rapamycin kinase 1 1
MIRT037493 ZNF318 zinc finger protein 318 1 1
MIRT037494 HNRNPC heterogeneous nuclear ribonucleoprotein C (C1/C2) 2 3
MIRT037495 SAMD4B sterile alpha motif domain containing 4B 1 1
MIRT037496 STMN1 stathmin 1 1 1
MIRT037497 SAT1 spermidine/spermine N1-acetyltransferase 1 1 1
MIRT037498 SALL1 spalt like transcription factor 1 1 1
MIRT037499 ZSCAN18 zinc finger and SCAN domain containing 18 1 1
MIRT037500 SLC35D1 solute carrier family 35 member D1 1 1
MIRT037501 TM9SF3 transmembrane 9 superfamily member 3 1 1
MIRT037502 TIAM1 T-cell lymphoma invasion and metastasis 1 1 1
MIRT037503 CHD5 chromodomain helicase DNA binding protein 5 1 1
MIRT037504 BAG6 BCL2 associated athanogene 6 1 1
MIRT037505 MED28 mediator complex subunit 28 1 1
MIRT037506 ANKRD52 ankyrin repeat domain 52 1 1
MIRT037507 MTHFD1 methylenetetrahydrofolate dehydrogenase, cyclohydrolase and formyltetrahydrofolate synthetase 1 1 1
MIRT037508 PPDPF pancreatic progenitor cell differentiation and proliferation factor 1 1
MIRT037509 PRKACA protein kinase cAMP-activated catalytic subunit alpha 1 1
MIRT037510 HPCAL4 hippocalcin like 4 1 1
MIRT037511 ZNF256 zinc finger protein 256 1 1
MIRT037512 CGNL1 cingulin like 1 1 1
MIRT037513 TUBA1B tubulin alpha 1b 1 1
MIRT037514 LNPEP leucyl and cystinyl aminopeptidase 1 1
MIRT037515 PDE4A phosphodiesterase 4A 1 1
MIRT037516 HOXD11 homeobox D11 2 3
MIRT037517 QARS glutaminyl-tRNA synthetase 1 1
MIRT037518 G3BP1 G3BP stress granule assembly factor 1 1 1
MIRT037519 PLEKHM2 pleckstrin homology and RUN domain containing M2 1 1
MIRT037520 POLR2A RNA polymerase II subunit A 1 1
MIRT037521 KIAA1462 junctional cadherin 5 associated 1 1
MIRT037522 SF3A1 splicing factor 3a subunit 1 1 1
MIRT037523 YBX1 Y-box binding protein 1 1 1
MIRT037524 PTGES3 prostaglandin E synthase 3 1 1
MIRT037525 FOXO3 forkhead box O3 1 1
MIRT037526 ATP5G3 ATP synthase, H+ transporting, mitochondrial Fo complex subunit C3 (subunit 9) 1 1
MIRT037527 AARS alanyl-tRNA synthetase 1 1
MIRT037528 ZNF155 zinc finger protein 155 1 1
MIRT037529 NCS1 neuronal calcium sensor 1 1 1
MIRT037530 FKBP4 FK506 binding protein 4 1 1
MIRT037531 ARHGDIA Rho GDP dissociation inhibitor alpha 1 1
MIRT037532 MAPK7 mitogen-activated protein kinase 7 1 1
MIRT037533 AGPAT2 1-acylglycerol-3-phosphate O-acyltransferase 2 1 1
MIRT037534 HIST1H1E histone cluster 1 H1 family member e 1 1
MIRT037535 MLF2 myeloid leukemia factor 2 1 1
MIRT037536 EDC3 enhancer of mRNA decapping 3 1 1
MIRT037537 CHRAC1 chromatin accessibility complex 1 1 1
MIRT037538 WIPF3 WAS/WASL interacting protein family member 3 1 1
MIRT037539 COX2 cytochrome c oxidase subunit II 1 1
MIRT037540 SRSF1 serine and arginine rich splicing factor 1 1 1
MIRT037541 CTNNBIP1 catenin beta interacting protein 1 1 1
MIRT037542 RPL4 ribosomal protein L4 1 1
MIRT037543 COX3 cytochrome c oxidase III 1 1
MIRT037544 DDX54 DEAD-box helicase 54 1 1
MIRT037545 TOB2 transducer of ERBB2, 2 1 1
MIRT037546 MAN2C1 mannosidase alpha class 2C member 1 1 1
MIRT037547 SMCR7L mitochondrial elongation factor 1 1 1
MIRT037548 RPLP1 ribosomal protein lateral stalk subunit P1 1 1
MIRT037549 RAN RAN, member RAS oncogene family 1 1
MIRT037550 NONO non-POU domain containing octamer binding 1 1
MIRT037551 CYB5R3 cytochrome b5 reductase 3 1 1
MIRT037552 SRGAP1 SLIT-ROBO Rho GTPase activating protein 1 1 1
MIRT037553 COLGALT1 collagen beta(1-O)galactosyltransferase 1 1 1
MIRT037554 MGRN1 mahogunin ring finger 1 1 1
MIRT037555 ANAPC1 anaphase promoting complex subunit 1 1 1
MIRT037556 TBX1 T-box 1 1 1
MIRT037557 NXPH4 neurexophilin 4 1 1
MIRT037558 HSPA1B heat shock protein family A (Hsp70) member 1B 1 1
MIRT037559 UBE2A ubiquitin conjugating enzyme E2 A 1 1
MIRT037560 KPNB1 karyopherin subunit beta 1 1 1
MIRT037561 NDUFB10 NADH:ubiquinone oxidoreductase subunit B10 1 1
MIRT037562 SYMPK symplekin 1 1
MIRT037563 SYPL1 synaptophysin like 1 1 1
MIRT037564 LRP3 LDL receptor related protein 3 1 1
MIRT037565 DDX24 DEAD-box helicase 24 1 1
MIRT037566 WDR37 WD repeat domain 37 1 1
MIRT037567 RPS14 ribosomal protein S14 1 1
MIRT037568 FAM53C family with sequence similarity 53 member C 1 1
MIRT037569 NMT1 N-myristoyltransferase 1 1 1
MIRT037570 PAGR1 PAXIP1 associated glutamate rich protein 1 1 1
MIRT037571 AKT2 AKT serine/threonine kinase 2 1 1
MIRT037572 TMEM14C transmembrane protein 14C 1 1
MIRT037573 MEX3D mex-3 RNA binding family member D 1 1
MIRT037574 BRAF B-Raf proto-oncogene, serine/threonine kinase 1 1
MIRT037575 POLR2L RNA polymerase II subunit L 1 1
MIRT037576 SERP1 stress associated endoplasmic reticulum protein 1 1 1
MIRT037577 C8orf33 chromosome 8 open reading frame 33 1 1
MIRT037578 NR1D2 nuclear receptor subfamily 1 group D member 2 1 1
MIRT037579 POLD3 DNA polymerase delta 3, accessory subunit 1 1
MIRT037580 HMGA1 high mobility group AT-hook 1 1 1
MIRT037581 SLC35B4 solute carrier family 35 member B4 1 1
MIRT037582 PELP1 proline, glutamate and leucine rich protein 1 1 1
MIRT037583 PLEKHG2 pleckstrin homology and RhoGEF domain containing G2 1 1
MIRT037584 RPL7A ribosomal protein L7a 1 1
MIRT037585 LAIR1 leukocyte associated immunoglobulin like receptor 1 1 1
MIRT037586 RPL10 ribosomal protein L10 1 1
MIRT037587 MRPS16 mitochondrial ribosomal protein S16 1 1
MIRT037588 SRM spermidine synthase 1 1
MIRT037589 EIF3K eukaryotic translation initiation factor 3 subunit K 1 1
MIRT037590 DESI1 desumoylating isopeptidase 1 1 1
MIRT037591 BET1 Bet1 golgi vesicular membrane trafficking protein 1 1
MIRT037592 HTRA2 HtrA serine peptidase 2 1 1
MIRT037593 LARP6 La ribonucleoprotein domain family member 6 1 1
MIRT037594 NOTCH2 notch 2 1 1
MIRT037595 ADCY9 adenylate cyclase 9 1 1
MIRT037596 C6orf62 chromosome 6 open reading frame 62 1 1
MIRT037597 FBXL19 F-box and leucine rich repeat protein 19 1 1
MIRT037598 L3MBTL2 L3MBTL2, polycomb repressive complex 1 subunit 1 1
MIRT037599 TRIM28 tripartite motif containing 28 1 1
MIRT037600 LGALS3 galectin 3 1 1
MIRT037601 IGSF8 immunoglobulin superfamily member 8 1 1
MIRT037602 LIN37 lin-37 DREAM MuvB core complex component 1 1
MIRT037603 PTPRF protein tyrosine phosphatase, receptor type F 1 1
MIRT037604 MTSS1L MTSS1L, I-BAR domain containing 1 1
MIRT037605 TRMT2A tRNA methyltransferase 2 homolog A 1 1
MIRT037606 DVL1 dishevelled segment polarity protein 1 1 1
MIRT037607 ATP5S ATP synthase, H+ transporting, mitochondrial Fo complex subunit s (factor B) 1 1
MIRT037608 TOR2A torsin family 2 member A 1 1
MIRT037609 RPS6KA5 ribosomal protein S6 kinase A5 1 1
MIRT037610 SMYD4 SET and MYND domain containing 4 1 1
MIRT037611 TJAP1 tight junction associated protein 1 1 1
MIRT037612 IRAK1 interleukin 1 receptor associated kinase 1 1 1
MIRT037613 PPM1M protein phosphatase, Mg2+/Mn2+ dependent 1M 1 1
MIRT037614 EIF4A2 eukaryotic translation initiation factor 4A2 1 1
MIRT037615 GFER growth factor, augmenter of liver regeneration 1 1
MIRT037616 PKP2 plakophilin 2 1 1
MIRT037617 FARSB phenylalanyl-tRNA synthetase beta subunit 1 1
MIRT037618 OPRD1 opioid receptor delta 1 1 1
MIRT037619 CCNY cyclin Y 1 1
MIRT037620 CNOT1 CCR4-NOT transcription complex subunit 1 1 1
MIRT037621 CXCL16 C-X-C motif chemokine ligand 16 1 1
MIRT037622 CEBPA CCAAT/enhancer binding protein alpha 1 1
MIRT037623 DDX11 DEAD/H-box helicase 11 1 1
MIRT037624 URB1 URB1 ribosome biogenesis 1 homolog (S. cerevisiae) 1 1
MIRT037625 SBF1 SET binding factor 1 1 1
MIRT037626 GNB2 G protein subunit beta 2 1 1
MIRT037627 KMT2D lysine methyltransferase 2D 2 3
MIRT037628 DDX17 DEAD-box helicase 17 1 1
MIRT037629 SORBS3 sorbin and SH3 domain containing 3 1 1
MIRT037630 TAPBP TAP binding protein 1 1
MIRT037631 BCR BCR, RhoGEF and GTPase activating protein 1 1
MIRT037632 RPL18 ribosomal protein L18 1 1
MIRT037633 INTS3 integrator complex subunit 3 1 1
MIRT037634 CDC25B cell division cycle 25B 1 1
MIRT037635 LDOC1L retrotransposon Gag like 6 1 1
MIRT037636 TUB tubby bipartite transcription factor 1 1
MIRT037637 NUDT2 nudix hydrolase 2 1 1
MIRT037638 CDAN1 codanin 1 1 1
MIRT037639 MRS2 MRS2, magnesium transporter 1 1
MIRT037640 PYGB glycogen phosphorylase B 1 1
MIRT037641 LDLRAD3 low density lipoprotein receptor class A domain containing 3 1 1
MIRT037642 COL5A1 collagen type V alpha 1 chain 1 1
MIRT037643 ATF7IP activating transcription factor 7 interacting protein 1 1
MIRT037644 AGO1 argonaute 1, RISC catalytic component 1 1
MIRT037645 ZNF212 zinc finger protein 212 1 1
MIRT037646 TSC2 TSC complex subunit 2 1 1
MIRT037647 FASN fatty acid synthase 1 1
MIRT037648 NOL9 nucleolar protein 9 1 1
MIRT037649 CLUH clustered mitochondria homolog 1 1
MIRT037650 PHF8 PHD finger protein 8 1 1
MIRT037651 EIF4G1 eukaryotic translation initiation factor 4 gamma 1 1 1
MIRT037652 TRAPPC12 trafficking protein particle complex 12 1 1
MIRT037653 HOXC11 homeobox C11 1 1
MIRT037654 DGCR14 ess-2 splicing factor homolog 1 1
MIRT037655 SLC25A1 solute carrier family 25 member 1 1 1
MIRT037656 MEX3C mex-3 RNA binding family member C 1 1
MIRT037657 RAI1 retinoic acid induced 1 1 1
MIRT037658 LY6E lymphocyte antigen 6 family member E 1 1
MIRT037659 SEC16A SEC16 homolog A, endoplasmic reticulum export factor 1 1
MIRT037660 RPL37 ribosomal protein L37 1 1
MIRT037661 CNN2 calponin 2 1 1
MIRT037662 ALDH18A1 aldehyde dehydrogenase 18 family member A1 1 1
MIRT037663 POMGNT1 protein O-linked mannose N-acetylglucosaminyltransferase 1 (beta 1,2-) 1 1
MIRT037664 EIF4A1 eukaryotic translation initiation factor 4A1 1 1
MIRT037665 PIM3 Pim-3 proto-oncogene, serine/threonine kinase 1 1
MIRT037666 PTPMT1 protein tyrosine phosphatase, mitochondrial 1 1 1
MIRT037667 NCEH1 neutral cholesterol ester hydrolase 1 1 1
MIRT037668 ART5 ADP-ribosyltransferase 5 1 1
MIRT037669 MRPS2 mitochondrial ribosomal protein S2 1 1
MIRT037670 NCL nucleolin 1 1
MIRT037671 NCKAP5L NCK associated protein 5 like 1 1
MIRT037672 ZCCHC14 zinc finger CCHC-type containing 14 1 1
MIRT037673 CCDC71 coiled-coil domain containing 71 1 1
MIRT037674 SURF4 surfeit 4 1 1
MIRT037675 RPL13 ribosomal protein L13 1 1
MIRT037676 ACTN4 actinin alpha 4 1 1
MIRT037677 PA2G4 proliferation-associated 2G4 1 1
MIRT037678 MIF macrophage migration inhibitory factor 1 1
MIRT037679 UBE2N ubiquitin conjugating enzyme E2 N 1 1
MIRT037680 LYNX1 Ly6/neurotoxin 1 1 1
MIRT037681 TACC3 transforming acidic coiled-coil containing protein 3 1 1
MIRT037682 GSR glutathione-disulfide reductase 1 1
MIRT037683 GSK3A glycogen synthase kinase 3 alpha 1 1
MIRT037684 ZMYM3 zinc finger MYM-type containing 3 1 1
MIRT037685 ERP29 endoplasmic reticulum protein 29 1 1
MIRT037686 MATR3 matrin 3 1 1
MIRT037687 FANCG Fanconi anemia complementation group G 1 1
MIRT037688 FAM83G family with sequence similarity 83 member G 1 1
MIRT037689 DUSP18 dual specificity phosphatase 18 1 1
MIRT037690 MYC MYC proto-oncogene, bHLH transcription factor 3 2
MIRT037691 TSPAN7 tetraspanin 7 1 1
MIRT037692 ATMIN ATM interactor 1 1
MIRT037693 SEPT2 septin 2 1 1
MIRT037694 FOXRED2 FAD dependent oxidoreductase domain containing 2 1 1
MIRT037695 TECR trans-2,3-enoyl-CoA reductase 1 1
MIRT037696 MRPL11 mitochondrial ribosomal protein L11 1 1
MIRT037697 IP6K1 inositol hexakisphosphate kinase 1 1 1
MIRT037698 PSMD4 proteasome 26S subunit, non-ATPase 4 1 1
MIRT037699 SH3GL1 SH3 domain containing GRB2 like 1, endophilin A2 1 1
MIRT037700 CTNNB1 catenin beta 1 1 1
MIRT037701 TMEM189 transmembrane protein 189 1 1
MIRT037702 LDLR low density lipoprotein receptor 1 1
MIRT037703 OGFR opioid growth factor receptor 1 1
MIRT037704 ADAP2 ArfGAP with dual PH domains 2 1 1
MIRT037705 LIPA lipase A, lysosomal acid type 1 1
MIRT037706 SNAPC4 small nuclear RNA activating complex polypeptide 4 1 1
MIRT037707 FBN2 fibrillin 2 1 1
MIRT037708 ZNF704 zinc finger protein 704 1 1
MIRT037709 EIF3M eukaryotic translation initiation factor 3 subunit M 1 1
MIRT037710 SMC1A structural maintenance of chromosomes 1A 1 1
MIRT037711 FZR1 fizzy and cell division cycle 20 related 1 1 1
MIRT037712 NANOS1 nanos C2HC-type zinc finger 1 1 1
MIRT037713 PRR12 proline rich 12 1 1
MIRT037714 PHC2 polyhomeotic homolog 2 1 1
MIRT037715 NOP9 NOP9 nucleolar protein 1 1
MIRT037716 HM13 histocompatibility minor 13 1 1
MIRT037717 PRDX5 peroxiredoxin 5 1 1
MIRT037718 IRGQ immunity related GTPase Q 1 1
MIRT037719 TGFB1 transforming growth factor beta 1 7 2
MIRT037720 MARCH3 membrane associated ring-CH-type finger 3 1 1
MIRT037721 TBX2 T-box 2 1 1
MIRT037722 TSC22D3 TSC22 domain family member 3 1 1
MIRT037723 DUT deoxyuridine triphosphatase 1 1
MIRT037724 FAM171A2 family with sequence similarity 171 member A2 1 1
MIRT037725 FGFR1 fibroblast growth factor receptor 1 1 1
MIRT037726 FRAT1 FRAT1, WNT signaling pathway regulator 1 1
MIRT037727 PSMD11 proteasome 26S subunit, non-ATPase 11 1 1
MIRT037728 PABPC1 poly(A) binding protein cytoplasmic 1 1 1
MIRT037729 ENO1 enolase 1 1 1
MIRT037730 AP3D1 adaptor related protein complex 3 delta 1 subunit 1 1
MIRT037731 TUBA1A tubulin alpha 1a 1 1
MIRT037732 ULK3 unc-51 like kinase 3 1 1
MIRT037733 PIP5K1A phosphatidylinositol-4-phosphate 5-kinase type 1 alpha 1 1
MIRT037734 SLC25A46 solute carrier family 25 member 46 1 1
MIRT037735 MED15 mediator complex subunit 15 1 1
MIRT037736 IRF2BP1 interferon regulatory factor 2 binding protein 1 1 1
MIRT037737 UBA1 ubiquitin like modifier activating enzyme 1 1 1
MIRT037738 ATHL1 protein-glucosylgalactosylhydroxylysine glucosidase 1 1
MIRT037739 CTNNA1 catenin alpha 1 1 1
MIRT037740 ADRM1 adhesion regulating molecule 1 1 1
MIRT037741 CCDC106 coiled-coil domain containing 106 1 1
MIRT054493 EEF1A2 eukaryotic translation elongation factor 1 alpha 2 3 1
MIRT451195 PIN1 peptidylprolyl cis/trans isomerase, NIMA-interacting 1 2 2
MIRT452931 DISC1 disrupted in schizophrenia 1 2 2
MIRT455468 LYPLA2 lysophospholipase II 2 2
MIRT457068 TOR4A torsin family 4 member A 2 2
MIRT464195 VGLL4 vestigial like family member 4 2 4
MIRT483030 KHSRP KH-type splicing regulatory protein 2 4
MIRT486062 CTDNEP1 CTD nuclear envelope phosphatase 1 2 2
MIRT486120 INO80E INO80 complex subunit E 2 2
MIRT486866 DPF1 double PHD fingers 1 2 2
MIRT488343 PAX2 paired box 2 2 2
MIRT488790 POFUT2 protein O-fucosyltransferase 2 2 2
MIRT490249 MFI2 melanotransferrin 2 2
MIRT490264 HAAO 3-hydroxyanthranilate 3,4-dioxygenase 2 2
MIRT490756 SRCIN1 SRC kinase signaling inhibitor 1 2 2
MIRT492321 SETD1B SET domain containing 1B 2 2
MIRT492851 NRGN neurogranin 2 2
MIRT499604 ANKRD45 ankyrin repeat domain 45 2 2
MIRT500189 BARX1 BARX homeobox 1 2 4
MIRT516765 FAM212B family with sequence similarity 212 member B 2 4
MIRT517949 TRIM59 tripartite motif containing 59 2 2
MIRT521182 SCAF4 SR-related CTD associated factor 4 2 2
MIRT526462 OSBPL5 oxysterol binding protein like 5 2 2
MIRT535148 PLEKHG5 pleckstrin homology and RhoGEF domain containing G5 2 2
MIRT569528 AP5Z1 adaptor related protein complex 5 zeta 1 subunit 2 2
MIRT570593 NFIX nuclear factor I X 2 2
MIRT571219 F2R coagulation factor II thrombin receptor 2 2
MIRT574145 MARVELD1 MARVEL domain containing 1 2 2
MIRT608758 CACNA1A calcium voltage-gated channel subunit alpha1 A 2 2
MIRT649509 RAB17 RAB17, member RAS oncogene family 2 2
MIRT692165 RNF207 ring finger protein 207 2 2
MIRT703495 FNDC3B fibronectin type III domain containing 3B 2 2
MIRT711081 NEUROD2 neuronal differentiation 2 2 2
MIRT712090 UNC13A unc-13 homolog A 2 2
MIRT712531 CYTH2 cytohesin 2 2 2
MIRT712755 GMDS GDP-mannose 4,6-dehydratase 2 2
MIRT712893 TGFA transforming growth factor alpha 2 2
MIRT714684 PRX periaxin 2 2
MIRT714723 VPS8 VPS8, CORVET complex subunit 2 2
MIRT714814 NOB1 NIN1/PSMD8 binding protein 1 homolog 2 2
MIRT716774 C1orf229 chromosome 1 open reading frame 229 2 2
MIRT717511 HRNR hornerin 2 2
MIRT717653 THBS2 thrombospondin 2 2 2
MIRT719595 PIAS4 protein inhibitor of activated STAT 4 2 2
MIRT720525 PTGR2 prostaglandin reductase 2 2 2
MIRT724925 VPS18 VPS18, CORVET/HOPS core subunit 2 2
MIRT737146 NOS3 nitric oxide synthase 3 1 0
MIRT756003 SLC7A5 solute carrier family 7 member 5 3 1
miRNA-Drug Associations
miRNA Small Melocule FDA CID Detection Method Condition PMID Year Expression Pattern of miRNA
miR-744 Hexahydro-1,3,5-trinitro-1,3,5-triazine (RDX) NULL 8490 Microarray mouse brain 19270793 2009 down-regulated
miR-744 Tert-butyl hydroperoxide (t-BHP) NULL 6410 Microarray mouse auditory cells 20510889 2010 up-regulated
miR-744 Ursodeoxycholic acid (UDCA) approved 31401 Microarray rat Liver 20689055 2010 up-regulated
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-mir-744 Cisplatin 5460033 NSC119875 approved resistant High Gastric Cancer cell line (SGC-7901)
hsa-mir-744 Dabrafenib 44462760 NSC764134 approved resistant cell line (A375)
hsa-mir-744 Androstenedione 6128 NSC9563 sensitive cell line (MCF-7)
hsa-mir-744 Fluorouracil 3385 NSC19893 approved resistant cell line (OE19)
hsa-mir-744 Fluorouracil 3385 NSC19893 approved resistant cell line (KYSE)
hsa-mir-744 Ceritinib 57379345 NSC776422 approved resistant cell line (H3122)
hsa-mir-744 Cisplatin 5460033 NSC119875 approved resistant cell line (SGC-7901)
hsa-miR-744-5p [1,1'-binaphthalene]-2,2',3,3'-tetrol 316673 NSC245006 sensitive
hsa-miR-744-5p 4-n-[12-[(5-amino-6-chloropyrimidin-4-yl)amino]dodecyl]-6-chloropyrimidine-4,5-diamine 358989 NSC619196 sensitive
hsa-miR-744-5p 5,7-dibromo-2-[(e)-2-(4-hydroxy-3-methoxyphenyl)ethenyl]quinolin-8-ol 135460261 NSC67090 sensitive
hsa-miR-744-5p Benzyl 2-(dibenzylamino)-3-phenylpropanoate 375616 NSC655438 sensitive
hsa-miR-744-5p N'-[(Z)-[(4Z)-2-(1,3-benzodioxol-5-yl)-4-[[4-oxo-4-[2-(trifluoromethyl)anilino]butanoyl]hydrazinylidene]chromen-3-ylidene]amino]-N-[2-(trifluoromethyl)phenyl]butanediamide 6399328 NSC641210 sensitive
hsa-miR-744-5p Paullone analog 47 396411 NSC702373 sensitive
hsa-miR-744-5p Ursa-11,13(18)-dien-28-oic acid-3.beta.-ol 378695 NSC661747 sensitive
hsa-miR-744-5p Tamoxifen 2733525 NSC180973 approved resistant High Breast Cancer cell line (MCF-7, LY2)
hsa-miR-744-5p Cisplatin 5460033 NSC119875 approved resistant High Ovarian Cancer cell line (SKOV3)
hsa-miR-744-5p Carboplatin 38904 NSC241240 approved sensitive High Ovarian Cancer tissue and cell line (MDAH-2274, SKOV3)
hsa-miR-744-5p Gefitinib 123631 NSC715055 approved resistant High Lung Adenocarcinoma cell line (A549)
hsa-miR-744-5p Cisplatin 5460033 NSC119875 approved sensitive High Esophageal Squamous Cell Carcinoma cell line (KYSE410)
hsa-miR-744-5p Tamoxifen 2733525 NSC180973 approved sensitive High Breast Cancer cell line (MCF-7)
hsa-miR-744-5p Cisplatin 5460033 NSC119875 approved resistant High Non-Small Cell Lung Cancer cell line (A549)
hsa-miR-744-5p Vinorelbine 44424639 approved resistant High Breast Cancer cell line (MDA-MB-231)
hsa-miR-744-5p Epirubicin 41867 NSC256942 approved resistant High Breast Cancer cell line (MDA-MB-231)
hsa-miR-744-5p Erlotinib 176870 NSC718781 approved sensitive High Non-Small Cell Lung Cancer tissue
hsa-miR-744-5p Gefitinib 123631 NSC715055 approved sensitive High Non-Small Cell Lung Cancer tissue
hsa-miR-744-5p Sunitinib 5329102 NSC750690 approved sensitive High Renal Cell Cancer tissue
hsa-miR-744-5p Gemcitabine 60750 NSC613327 approved resistant High Pancreatic Cancer cell line (AsPC-1)
hsa-miR-744-5p Sorafenib 216239 NSC747971 approved sensitive Low Hepatocellular Carcinoma cell line (HepG2)
hsa-miR-744-5p Cisplatin 5460033 NSC119875 approved resistant High Gastric Cancer cell line (SGC-7901, BGC-823)
hsa-miR-744-5p Oxaliplatin 6857599 NSC266046 approved resistant Low Colorectal Cancer cell line (HCT-116)
hsa-miR-744-5p Bortezomib 387447 NSC681239 approved sensitive Low Multiple Myeloma tissue
hsa-miR-744-5p Cisplatin 5460033 NSC119875 approved resistant High Non-Small Cell Lung Cancer cell line (A549)
hsa-miR-744-5p Osimertinib 71496458 NSC779217 approved sensitive cell line (HCC827)
hsa-miR-744-5p Osimertinib 71496458 NSC779217 approved resistant cell line (PC9)
hsa-miR-744-5p Cisplatin 5460033 NSC119875 approved sensitive cell line (CAL-27) (cytosolic RNA)
hsa-miR-744-5p Doxorubicin 31703 NSC123127 approved sensitive cell line (HS578T)
hsa-miR-744-5p Cisplatin 5460033 NSC119875 approved resistant cell line (A549)
hsa-miR-744-5p Fluorouracil 3385 NSC19893 approved sensitive cell line (HCT15)
hsa-miR-744-5p 4-Hydroxytamoxifen+Tamoxifen sensitive cell line (LY2)
hsa-miR-744-5p Ethanol+Tamoxifen sensitive cell line (LY2)
hsa-miR-744-5p Methotrexate 126941 NSC740 approved resistant cell line (HT29)
hsa-miR-744-5p Fluorouracil 3385 NSC19893 approved resistant cell line (KM12C) (72 h)
hsa-miR-744-5p Cisplatin 5460033 NSC119875 approved resistant cell line (RPMI2650)
hsa-miR-744-5p Sunitinib 5329102 NSC750690 approved resistant tissue (CardA)
hsa-miR-744-5p Gemcitabine 60750 NSC613327 approved resistant cell line (MDA-231)
hsa-miR-744-5p Paclitaxel 36314 NSC125973 approved sensitive cell line (PC3PR20)
hsa-miR-744-5p Cisplatin 5460033 NSC119875 approved sensitive cell line (A549)
hsa-miR-744-5p Gemcitabine 60750 NSC613327 approved resistant cell line (PANC-1) (1500 ng/ml)
hsa-miR-744-5p Gemcitabine 60750 NSC613327 approved resistant cell line (Panc1-GR4)
hsa-miR-744-5p Ceritinib 57379345 NSC776422 approved resistant cell line (H3122)
hsa-miR-744-5p Cisplatin 5460033 NSC119875 approved sensitive cell line (H23)

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