pre-miRNA Information
pre-miRNA hsa-mir-744   
Genomic Coordinates chr17: 12081899 - 12081996
Synonyms MIRN744, hsa-mir-744, MIR744
Description Homo sapiens miR-744 stem-loop
Comment This sequence was identified as a miRNA candidate by Berezikov et al. using RAKE and MPSS techniques .
RNA Secondary Structure
Associated Diseases

Mature miRNA Information
Mature miRNA hsa-miR-744-5p
Sequence 11| UGCGGGGCUAGGGCUAACAGCA |32
Evidence Experimental
Experiments Cloned
DRVs in miRNA
Mutant ID Mutant Position Mutant Source
COSN23015028 1 COSMIC
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs557969425 1 dbSNP
rs748252260 4 dbSNP
rs1470408501 7 dbSNP
rs1178657616 10 dbSNP
Putative Targets

miRNA Expression profile
Human miRNA Tissue Atlas
miRNAs in Extracellular Vesicles
Circulating MicroRNA Expression Profiling
Biomarker Information
Biomarker ID Name Type Discovered From Mode Level Source Testing Methods
B6B8SM miR-744-5p Safety Biomarker (SAF) Clinical/Experimental Data Expression Increase Urine Real-time polymerase chain reaction
Gene Information
Gene Symbol LARP6   
Synonyms ACHN
Description La ribonucleoprotein domain family member 6
Transcript NM_018357   
Other Transcripts NM_197958   
Expression
Putative miRNA Targets on LARP6
3'UTR of LARP6
(miRNA target sites are highlighted)
>LARP6|NM_018357|3'UTR
   1 ATACCTTCTATTTTTAATACAAGCTCCACTGAAAACCACCTTCGTTTTCAAGGTTCTGACAAACACCTGGCATGACAGAA
  81 TGGAATTCGTTCCCCTTTGAGAGATTTTTTATTCATGTAGACCTCTTAATTTATCTATCTGTAATATACATAAATCGGTA
 161 CGCCATGGTTTGAAGACCACCTTCTAGTTCAGGACTCCTGTTCTTCCCAGCATGGCCACTATTTTGATGATGGCTGATGT
 241 GTGTGAGTGTGATGGCCCTGAAGGGCTGTAGGACGGAGGTTCCCTGGGGGAAGTCTGTTCTTTGGTATGGAATTTTTCTC
 321 TCTTCTTTGGTATGGAATTTTTCCCTTCAGTGACTGAGCTGTCCTCGATAGGCCATGCAAGGGCTTCCTGAGAGTTCAGG
 401 AAAGTTCTCTTGTGCAACAGCAAGTAGCTAAGCCTATAGCATGGTGTCTTGTAGGACCAAATCGATGTTACCTGTCAAGT
 481 AAATAAATAATAAAACACCCAACTGGGAGTGCTGACTTTGAGGTTATAAAAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' acgACAAUCGGG--AUCGGGGCgu 5'
             ||| ||: :  |:||||:|  
Target 5' gtgTGTGAGTGTGATGGCCCTGaa 3'
239 - 262 121.00 -15.30
2
miRNA  3' acGACAAUCGGGAUCGGGGCGu 5'
            :| ||| : | |||:|| | 
Target 5' taTTTTTAATACAAGCTCCACt 3'
9 - 30 112.00 -8.50
3
miRNA  3' acGACAAUCGGGAU-CGGGGCGu 5'
            ||||   |  || ||| :|| 
Target 5' agCTGTCCTCGATAGGCCATGCa 3'
357 - 379 104.00 -16.50
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN31602120 1 COSMIC
COSN2557995 26 COSMIC
COSN13636451 43 COSMIC
COSN30518561 44 COSMIC
COSN31550980 52 COSMIC
COSN30130181 88 COSMIC
COSN30116358 96 COSMIC
COSN30479667 114 COSMIC
COSN31574957 120 COSMIC
COSN31638843 149 COSMIC
COSN30122947 152 COSMIC
COSN31599695 156 COSMIC
COSN30495004 160 COSMIC
COSN31552317 161 COSMIC
COSN8477224 175 COSMIC
COSN24105289 285 COSMIC
COSN25949404 533 COSMIC
COSN25922236 656 COSMIC
COSN16792009 914 COSMIC
COSN5213632 1045 COSMIC
COSN25297806 1060 COSMIC
COSN22755239 1143 COSMIC
COSN21205712 1716 COSMIC
COSN8477223 1811 COSMIC
COSN24716555 1864 COSMIC
COSN8477222 2089 COSMIC
COSN8815758 2124 COSMIC
COSN8477221 2469 COSMIC
COSN29273813 2922 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs756160357 7 dbSNP
rs1427288994 11 dbSNP
rs1208974821 13 dbSNP
rs1456848859 28 dbSNP
rs752801599 28 dbSNP
rs767725962 36 dbSNP
rs932197767 43 dbSNP
rs377477264 44 dbSNP
rs1174641363 65 dbSNP
rs539793434 67 dbSNP
rs1408562139 71 dbSNP
rs1453535693 76 dbSNP
rs1268846390 77 dbSNP
rs1359909739 80 dbSNP
rs976544861 88 dbSNP
rs1296122928 89 dbSNP
rs1311456308 92 dbSNP
rs1221451885 98 dbSNP
rs1264671452 108 dbSNP
rs1323761368 110 dbSNP
rs1207664231 111 dbSNP
rs556416805 111 dbSNP
rs141483948 114 dbSNP
rs1258455921 115 dbSNP
rs1327321199 116 dbSNP
rs554187979 141 dbSNP
rs943643666 147 dbSNP
rs536921686 148 dbSNP
rs148320872 156 dbSNP
rs575525793 157 dbSNP
rs558457155 161 dbSNP
rs369918202 162 dbSNP
rs1395682183 165 dbSNP
rs1026442593 166 dbSNP
rs991705854 167 dbSNP
rs1476279711 184 dbSNP
rs971191359 187 dbSNP
rs958585684 195 dbSNP
rs35280962 203 dbSNP
rs1366791206 206 dbSNP
rs1022834091 212 dbSNP
rs1012822505 219 dbSNP
rs1036145227 226 dbSNP
rs557998994 227 dbSNP
rs1032337062 229 dbSNP
rs1215873287 231 dbSNP
rs1261880456 236 dbSNP
rs1490321047 241 dbSNP
rs539755128 243 dbSNP
rs1271525686 256 dbSNP
rs1244497939 259 dbSNP
rs561792143 262 dbSNP
rs780644124 269 dbSNP
rs1014876690 274 dbSNP
rs1159884353 275 dbSNP
rs1271505670 279 dbSNP
rs1349328967 286 dbSNP
rs1400372704 290 dbSNP
rs1422689331 291 dbSNP
rs1042431029 311 dbSNP
rs1365964239 311 dbSNP
rs1198012222 312 dbSNP
rs1006201020 325 dbSNP
rs1314744794 332 dbSNP
rs901998836 337 dbSNP
rs547726662 344 dbSNP
rs1315908421 363 dbSNP
rs888013290 366 dbSNP
rs943614527 367 dbSNP
rs553435634 369 dbSNP
rs1326799838 383 dbSNP
rs996724853 393 dbSNP
rs534036137 394 dbSNP
rs571763532 398 dbSNP
rs536782988 401 dbSNP
rs928940527 406 dbSNP
rs1231434198 411 dbSNP
rs902010928 417 dbSNP
rs567661942 425 dbSNP
rs1481757884 434 dbSNP
rs552438659 439 dbSNP
rs147303158 450 dbSNP
rs981175830 451 dbSNP
rs1162671519 454 dbSNP
rs1422423166 458 dbSNP
rs1385775116 463 dbSNP
rs1040780239 464 dbSNP
rs1326576877 466 dbSNP
rs943759793 471 dbSNP
rs374231933 472 dbSNP
rs924393707 477 dbSNP
rs1356020347 496 dbSNP
rs1386702649 498 dbSNP
rs1379950623 509 dbSNP
rs1454104065 510 dbSNP
rs551021468 520 dbSNP
rs1360755223 521 dbSNP
rs1469192223 522 dbSNP
rs947087967 531 dbSNP
rs915745428 534 dbSNP
rs1309568843 535 dbSNP
rs991355941 542 dbSNP
rs957236870 543 dbSNP
rs1242753740 546 dbSNP
rs868024743 551 dbSNP
rs914452859 552 dbSNP
rs1185477185 559 dbSNP
rs1243720291 563 dbSNP
rs998803103 572 dbSNP
rs879053495 575 dbSNP
rs1483657633 579 dbSNP
rs967087409 588 dbSNP
rs1421407976 590 dbSNP
rs531214095 592 dbSNP
rs772497226 596 dbSNP
rs1220717118 598 dbSNP
rs991424364 604 dbSNP
rs958749693 606 dbSNP
rs901967832 607 dbSNP
rs1290877987 611 dbSNP
rs1363759808 618 dbSNP
rs1223385420 621 dbSNP
rs1371316868 626 dbSNP
rs1281322881 628 dbSNP
rs1215510842 633 dbSNP
rs1444352325 634 dbSNP
rs1262810775 638 dbSNP
rs115249022 642 dbSNP
rs1205767981 643 dbSNP
rs551653908 643 dbSNP
rs1008100450 650 dbSNP
rs528685205 651 dbSNP
rs1190943936 655 dbSNP
rs981280386 656 dbSNP
rs1049748601 660 dbSNP
rs1198380156 663 dbSNP
rs1426892934 664 dbSNP
rs1470764890 668 dbSNP
rs962082751 670 dbSNP
rs1176627483 671 dbSNP
rs918907860 673 dbSNP
rs1014989680 674 dbSNP
rs1316911007 675 dbSNP
rs746229999 681 dbSNP
rs1006148716 689 dbSNP
rs1045463812 690 dbSNP
rs949775195 700 dbSNP
rs915630918 706 dbSNP
rs76264900 720 dbSNP
rs1225597022 726 dbSNP
rs957410600 729 dbSNP
rs925824310 739 dbSNP
rs540318497 742 dbSNP
rs528594403 743 dbSNP
rs1286306513 746 dbSNP
rs1399712023 769 dbSNP
rs996447624 770 dbSNP
rs1159785240 771 dbSNP
rs902126075 790 dbSNP
rs575748438 792 dbSNP
rs999725635 800 dbSNP
rs1159766053 811 dbSNP
rs748931645 814 dbSNP
rs369573380 819 dbSNP
rs1420865251 822 dbSNP
rs902907256 832 dbSNP
rs532333646 833 dbSNP
rs1247618211 841 dbSNP
rs947004922 843 dbSNP
rs1324525262 844 dbSNP
rs1315328750 845 dbSNP
rs1476483141 855 dbSNP
rs1335364264 876 dbSNP
rs1237104093 883 dbSNP
rs1286499195 889 dbSNP
rs1351413317 898 dbSNP
rs1245156391 901 dbSNP
rs1027846411 905 dbSNP
rs1322827539 906 dbSNP
rs1490795676 911 dbSNP
rs1222922161 912 dbSNP
rs143962588 920 dbSNP
rs1249432395 930 dbSNP
rs994153799 934 dbSNP
rs188373952 936 dbSNP
rs1221556157 938 dbSNP
rs1183475798 943 dbSNP
rs1363892177 948 dbSNP
rs184988585 950 dbSNP
rs1055902963 951 dbSNP
rs937272279 952 dbSNP
rs1163589040 955 dbSNP
rs376311616 969 dbSNP
rs558837530 971 dbSNP
rs779209859 974 dbSNP
rs1343072800 975 dbSNP
rs1389899356 976 dbSNP
rs138542219 977 dbSNP
rs894167528 979 dbSNP
rs981226238 996 dbSNP
rs935795842 997 dbSNP
rs1361466974 998 dbSNP
rs940540818 1005 dbSNP
rs192646372 1007 dbSNP
rs1174949254 1009 dbSNP
rs866047189 1010 dbSNP
rs1337138768 1011 dbSNP
rs907941488 1014 dbSNP
rs1250795618 1018 dbSNP
rs552016766 1019 dbSNP
rs1460536907 1029 dbSNP
rs984843299 1032 dbSNP
rs1426373602 1041 dbSNP
rs1446998410 1042 dbSNP
rs922482673 1051 dbSNP
rs1186280513 1052 dbSNP
rs1460782640 1057 dbSNP
rs952103534 1058 dbSNP
rs976654208 1062 dbSNP
rs757487980 1067 dbSNP
rs1244062725 1070 dbSNP
rs1469388778 1075 dbSNP
rs1334830813 1081 dbSNP
rs1028984689 1084 dbSNP
rs965987745 1099 dbSNP
rs115846909 1100 dbSNP
rs1193480701 1107 dbSNP
rs1460942343 1117 dbSNP
rs1261288632 1130 dbSNP
rs187918767 1132 dbSNP
rs11072220 1136 dbSNP
rs952202101 1137 dbSNP
rs999673330 1138 dbSNP
rs1359540731 1140 dbSNP
rs1299398813 1156 dbSNP
rs1322433596 1157 dbSNP
rs1435314565 1161 dbSNP
rs1264471849 1169 dbSNP
rs1028230870 1189 dbSNP
rs1261623374 1206 dbSNP
rs902688124 1207 dbSNP
rs1020012319 1225 dbSNP
rs993647856 1227 dbSNP
rs1480246068 1229 dbSNP
rs1174475155 1244 dbSNP
rs1408394788 1249 dbSNP
rs1011317682 1250 dbSNP
rs1471276859 1254 dbSNP
rs892917327 1262 dbSNP
rs1055448533 1283 dbSNP
rs1024541184 1286 dbSNP
rs1427122110 1307 dbSNP
rs1278630879 1316 dbSNP
rs1344570539 1321 dbSNP
rs557357329 1322 dbSNP
rs1422030337 1338 dbSNP
rs937031591 1340 dbSNP
rs907099856 1345 dbSNP
rs369031493 1346 dbSNP
rs1260694065 1349 dbSNP
rs940488683 1351 dbSNP
rs1207362388 1356 dbSNP
rs1205645114 1363 dbSNP
rs1490269962 1365 dbSNP
rs1197618708 1367 dbSNP
rs1483582200 1370 dbSNP
rs777946100 1371 dbSNP
rs1256535881 1373 dbSNP
rs1203678273 1377 dbSNP
rs985062506 1379 dbSNP
rs930740564 1385 dbSNP
rs537473678 1396 dbSNP
rs1364801661 1398 dbSNP
rs1402857490 1402 dbSNP
rs1304632216 1411 dbSNP
rs922033225 1412 dbSNP
rs974744690 1413 dbSNP
rs112249527 1420 dbSNP
rs1318141409 1450 dbSNP
rs529967840 1460 dbSNP
rs1019170541 1468 dbSNP
rs1287363770 1476 dbSNP
rs1490306522 1486 dbSNP
rs1220694764 1487 dbSNP
rs1248716723 1491 dbSNP
rs1381570318 1498 dbSNP
rs945858689 1500 dbSNP
rs978349406 1510 dbSNP
rs922451660 1511 dbSNP
rs1420948915 1512 dbSNP
rs1379188113 1515 dbSNP
rs1159237183 1516 dbSNP
rs1384510201 1517 dbSNP
rs1422558827 1531 dbSNP
rs35963846 1534 dbSNP
rs1040926477 1535 dbSNP
rs942643376 1538 dbSNP
rs117334085 1543 dbSNP
rs1296025932 1548 dbSNP
rs1460878905 1552 dbSNP
rs986183275 1555 dbSNP
rs1310697203 1556 dbSNP
rs952150320 1575 dbSNP
rs117859406 1583 dbSNP
rs762858324 1587 dbSNP
rs1292500003 1593 dbSNP
rs972569831 1594 dbSNP
rs962178821 1595 dbSNP
rs1249820374 1608 dbSNP
rs1424323332 1610 dbSNP
rs1383625942 1626 dbSNP
rs1185593854 1627 dbSNP
rs1424500190 1628 dbSNP
rs1011515967 1631 dbSNP
rs1249863891 1634 dbSNP
rs1024500366 1636 dbSNP
rs566263431 1639 dbSNP
rs527442883 1640 dbSNP
rs1034526619 1646 dbSNP
rs1355902430 1661 dbSNP
rs1250319452 1662 dbSNP
rs1001183905 1666 dbSNP
rs147103294 1688 dbSNP
rs1451098898 1693 dbSNP
rs906880550 1698 dbSNP
rs1286461287 1700 dbSNP
rs1045589901 1703 dbSNP
rs1214324456 1704 dbSNP
rs1289155550 1706 dbSNP
rs940601536 1724 dbSNP
rs1320310846 1731 dbSNP
rs886394808 1753 dbSNP
rs1321827702 1757 dbSNP
rs560666880 1766 dbSNP
rs1048865980 1779 dbSNP
rs1212238577 1795 dbSNP
rs930499753 1799 dbSNP
rs1041444881 1802 dbSNP
rs922018139 1820 dbSNP
rs550133570 1833 dbSNP
rs530531663 1837 dbSNP
rs901000902 1842 dbSNP
rs868119724 1844 dbSNP
rs117588115 1845 dbSNP
rs1309101480 1852 dbSNP
rs545284822 1864 dbSNP
rs978126900 1865 dbSNP
rs1360218902 1873 dbSNP
rs1430592031 1881 dbSNP
rs1268807645 1890 dbSNP
rs942618605 1891 dbSNP
rs1219487775 1897 dbSNP
rs1282880748 1902 dbSNP
rs573082082 1908 dbSNP
rs752380049 1918 dbSNP
rs1220995574 1920 dbSNP
rs1165255457 1926 dbSNP
rs545224421 1929 dbSNP
rs1048796437 1944 dbSNP
rs1265083744 1952 dbSNP
rs1488490147 1962 dbSNP
rs1363348087 1968 dbSNP
rs1156998859 1969 dbSNP
rs915509259 1970 dbSNP
rs1426738092 1971 dbSNP
rs534563934 1972 dbSNP
rs1172686431 1973 dbSNP
rs1406545550 1976 dbSNP
rs930630940 1981 dbSNP
rs1296815795 1985 dbSNP
rs1362923026 1986 dbSNP
rs989634284 1988 dbSNP
rs1343842417 1989 dbSNP
rs1438833531 1990 dbSNP
rs1253890859 1991 dbSNP
rs1219058334 1999 dbSNP
rs1275542940 2000 dbSNP
rs959823783 2001 dbSNP
rs1490131364 2002 dbSNP
rs1034062917 2005 dbSNP
rs114179699 2008 dbSNP
rs1211303814 2016 dbSNP
rs1266455856 2023 dbSNP
rs971151510 2032 dbSNP
rs1199057107 2038 dbSNP
rs1488588271 2040 dbSNP
rs1231816831 2042 dbSNP
rs1468153537 2043 dbSNP
rs1157445314 2044 dbSNP
rs1382678713 2047 dbSNP
rs992959913 2062 dbSNP
rs959137051 2075 dbSNP
rs1259689104 2076 dbSNP
rs1023920547 2086 dbSNP
rs766967169 2087 dbSNP
rs1004526852 2091 dbSNP
rs1444620770 2107 dbSNP
rs776288152 2110 dbSNP
rs968395247 2113 dbSNP
rs1020400207 2116 dbSNP
rs1009934278 2121 dbSNP
rs1330537090 2123 dbSNP
rs1289550304 2124 dbSNP
rs1358121033 2125 dbSNP
rs12900022 2134 dbSNP
rs1344071118 2136 dbSNP
rs1325918198 2150 dbSNP
rs1435621845 2151 dbSNP
rs1179939460 2156 dbSNP
rs1049469605 2159 dbSNP
rs1238212271 2163 dbSNP
rs1040773840 2164 dbSNP
rs115147961 2165 dbSNP
rs1287266651 2168 dbSNP
rs889630883 2170 dbSNP
rs900343514 2177 dbSNP
rs1164096596 2181 dbSNP
rs1038904459 2182 dbSNP
rs1333466712 2185 dbSNP
rs1458898009 2187 dbSNP
rs1412735629 2189 dbSNP
rs774920125 2192 dbSNP
rs577958857 2193 dbSNP
rs1342103711 2200 dbSNP
rs772626823 2201 dbSNP
rs1048282346 2211 dbSNP
rs199509481 2212 dbSNP
rs931245825 2216 dbSNP
rs1269273249 2222 dbSNP
rs1337077251 2224 dbSNP
rs1200090759 2225 dbSNP
rs1258161795 2226 dbSNP
rs141846859 2227 dbSNP
rs1460434050 2230 dbSNP
rs556303638 2231 dbSNP
rs899149833 2232 dbSNP
rs1254657265 2235 dbSNP
rs945374113 2238 dbSNP
rs866110946 2265 dbSNP
rs1375765159 2267 dbSNP
rs746365999 2272 dbSNP
rs771440462 2273 dbSNP
rs1401207668 2285 dbSNP
rs959533628 2289 dbSNP
rs1202954648 2291 dbSNP
rs1465890140 2292 dbSNP
rs1268176133 2293 dbSNP
rs1301067411 2314 dbSNP
rs1404226738 2316 dbSNP
rs992927349 2321 dbSNP
rs1317407129 2323 dbSNP
rs1203642102 2330 dbSNP
rs557915256 2332 dbSNP
rs1278441281 2333 dbSNP
rs6494891 2337 dbSNP
rs138413426 2338 dbSNP
rs1257198951 2347 dbSNP
rs969410784 2349 dbSNP
rs1019905321 2359 dbSNP
rs549134314 2376 dbSNP
rs75368589 2381 dbSNP
rs1424579288 2384 dbSNP
rs1480174026 2389 dbSNP
rs1174086599 2390 dbSNP
rs965021430 2394 dbSNP
rs1466504567 2395 dbSNP
rs1157861935 2404 dbSNP
rs1358468102 2411 dbSNP
rs1019293065 2414 dbSNP
rs1437497300 2415 dbSNP
rs1389521649 2419 dbSNP
rs1336132457 2420 dbSNP
rs1298471401 2430 dbSNP
rs1006612686 2434 dbSNP
rs889607489 2447 dbSNP
rs1240906236 2448 dbSNP
rs74673399 2461 dbSNP
rs749478458 2472 dbSNP
rs1285913333 2476 dbSNP
rs550662046 2482 dbSNP
rs1399971063 2485 dbSNP
rs778106626 2487 dbSNP
rs766976222 2489 dbSNP
rs900455747 2493 dbSNP
rs1264298964 2494 dbSNP
rs756450890 2496 dbSNP
rs1189635689 2500 dbSNP
rs1269568697 2513 dbSNP
rs1433841052 2515 dbSNP
rs1158376550 2519 dbSNP
rs1378384454 2521 dbSNP
rs1421394723 2523 dbSNP
rs530561609 2526 dbSNP
rs1372250639 2527 dbSNP
rs1364665037 2545 dbSNP
rs1456065595 2546 dbSNP
rs1186328900 2548 dbSNP
rs897100395 2549 dbSNP
rs1036960764 2550 dbSNP
rs1309224032 2558 dbSNP
rs1450924280 2563 dbSNP
rs1248170602 2564 dbSNP
rs1242890800 2565 dbSNP
rs1008765080 2570 dbSNP
rs940645022 2572 dbSNP
rs1182440546 2574 dbSNP
rs895839900 2576 dbSNP
rs35229745 2587 dbSNP
rs890516993 2602 dbSNP
rs1057221320 2606 dbSNP
rs1440132194 2610 dbSNP
rs1281366829 2623 dbSNP
rs542959532 2624 dbSNP
rs945318613 2631 dbSNP
rs781198179 2633 dbSNP
rs564874693 2634 dbSNP
rs1166532031 2646 dbSNP
rs938257202 2649 dbSNP
rs1461138091 2658 dbSNP
rs1328716381 2665 dbSNP
rs979379617 2665 dbSNP
rs1230950818 2666 dbSNP
rs1366181093 2667 dbSNP
rs926916500 2677 dbSNP
rs763214332 2683 dbSNP
rs150950856 2688 dbSNP
rs1322572698 2690 dbSNP
rs949567033 2691 dbSNP
rs1342295684 2693 dbSNP
rs144100131 2699 dbSNP
rs964990610 2707 dbSNP
rs1199253692 2713 dbSNP
rs1395574279 2718 dbSNP
rs1019262259 2727 dbSNP
rs559704936 2738 dbSNP
rs1183412691 2749 dbSNP
rs529924514 2752 dbSNP
rs60147895 2753 dbSNP
rs1425234552 2761 dbSNP
rs1465681020 2762 dbSNP
rs1332691289 2765 dbSNP
rs1027731564 2766 dbSNP
rs973119027 2767 dbSNP
rs1380261251 2774 dbSNP
rs1218321587 2780 dbSNP
rs1276526140 2795 dbSNP
rs1238660848 2796 dbSNP
rs1188899195 2802 dbSNP
rs1026814877 2803 dbSNP
rs995715599 2804 dbSNP
rs563914166 2806 dbSNP
rs1017547240 2812 dbSNP
rs1237845617 2818 dbSNP
rs190903810 2827 dbSNP
rs1191138515 2828 dbSNP
rs1264856834 2833 dbSNP
rs1291331266 2833 dbSNP
rs1477887250 2839 dbSNP
rs890294811 2842 dbSNP
rs372624877 2844 dbSNP
rs553923359 2845 dbSNP
rs1013534323 2849 dbSNP
rs1422371470 2851 dbSNP
rs1010056240 2852 dbSNP
rs1448747323 2853 dbSNP
rs893927954 2855 dbSNP
rs146723144 2856 dbSNP
rs1296626006 2862 dbSNP
rs1342644107 2868 dbSNP
rs1411446882 2870 dbSNP
rs895808503 2873 dbSNP
rs938054190 2878 dbSNP
rs905414230 2879 dbSNP
rs1057189606 2884 dbSNP
rs1279232750 2896 dbSNP
rs1352780871 2905 dbSNP
rs1278644422 2909 dbSNP
rs975339943 2922 dbSNP
rs1214143666 2923 dbSNP
rs1287847186 2923 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
     
Conditions Flp-In T-REx 293-hAGO1 cells
Location of target site CDS
Original Description (Extracted from the article) ... Validation of interactions identified by CLASH suppports their reliability. ...

- Helwak A; Kudla G; Dudnakova T; Tollervey D, 2013, Cell.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1
miRNA  3' acgacaaucgggaUCGGGGCGu 5'
                       ||:||||| 
Target 5' ------------cAGTCCCGCg 3'
1 - 10
2
miRNA  3' acgacaAUCGGGAUCGGGGCGU-- 5'
                |:|||| ||:|| ||:  
Target 5' gagccaTGGCCC-AGTCCGGCGGG 3'
10 - 32
Article - Helwak A; Kudla G; Dudnakova T; Tollervey D
- Cell, 2013
MicroRNAs (miRNAs) play key roles in gene regulation, but reliable bioinformatic or experimental identification of their targets remains difficult. To provide an unbiased view of human miRNA targets, we developed a technique for ligation and sequencing of miRNA-target RNA duplexes associated with human AGO1. Here, we report data sets of more than 18,000 high-confidence miRNA-mRNA interactions. The binding of most miRNAs includes the 5' seed region, but around 60% of seed interactions are noncanonical, containing bulged or mismatched nucleotides. Moreover, seed interactions are generally accompanied by specific, nonseed base pairing. 18% of miRNA-mRNA interactions involve the miRNA 3' end, with little evidence for 5' contacts, and some of these were functionally validated. Analyses of miRNA:mRNA base pairing showed that miRNA species systematically differ in their target RNA interactions, and strongly overrepresented motifs were found in the interaction sites of several miRNAs. We speculate that these affect the response of RISC to miRNA-target binding.
LinkOut: [PMID: 23622248]
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
GSE28544 Breast cancer -0.604 8.9e-4 -0.583 1.4e-3 24 Click to see details
GSE42095 Differentiated embryonic stem cells -0.52 5.5e-3 -0.507 6.8e-3 23 Click to see details
GSE26953 Aortic valvular endothelial cells 0.463 1.1e-2 0.321 6.3e-2 24 Click to see details
GSE19350 CNS germ cell tumors -0.599 2.0e-2 -0.559 2.9e-2 12 Click to see details
GSE21687 Ependynoma primary tumors 0.243 2.7e-2 0.017 4.5e-1 64 Click to see details
GSE32688 Pancreatic cancer 0.332 3.2e-2 0.356 2.3e-2 32 Click to see details
GSE35602 Colorectal cancer stromal tissue 0.368 3.5e-2 0.384 2.9e-2 25 Click to see details
GSE38974 Chronic obstructive pulmonary disease -0.276 9.1e-2 -0.267 9.8e-2 25 Click to see details
GSE19783 ER+ ER+ breast cancer -0.309 9.2e-2 -0.168 2.4e-1 20 Click to see details
GSE17498 Multiple myeloma -0.212 9.5e-2 -0.187 1.2e-1 40 Click to see details
GSE19536 Breast cancer -0.132 9.5e-2 -0.120 1.2e-1 100 Click to see details
GSE28260 Renal cortex and medulla -0.298 1.6e-1 -0.319 1.4e-1 13 Click to see details
GSE15076 Monocyte-derived dendritic cells 0.366 1.7e-1 0.417 1.3e-1 9 Click to see details
GSE19783 ER- ER- breast cancer -0.084 2.3e-1 -0.096 2.0e-1 79 Click to see details
GSE21032 Prostate cancer -0.064 2.8e-1 -0.129 1.2e-1 83 Click to see details
GSE38226 Liver fibrosis -0.056 4.0e-1 -0.044 4.2e-1 21 Click to see details
GSE34608 Pulmonary tuberculosis and sarcoidosis -0.025 4.6e-1 0.180 2.2e-1 20 Click to see details
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
STAD -0.35 0.02 -0.318 0.04 32 Click to see details
HNSC -0.263 0.05 -0.281 0.04 42 Click to see details
BRCA -0.138 0.11 -0.182 0.05 84 Click to see details
PCPG -0.782 0.21 -0.500 0.33 3 Click to see details
KICH 0.149 0.24 0.111 0.3 25 Click to see details
UCEC -0.171 0.24 -0.198 0.21 19 Click to see details
BLCA -0.176 0.24 -0.020 0.47 18 Click to see details
KIRC -0.079 0.26 -0.042 0.37 68 Click to see details
LIHC -0.086 0.28 -0.165 0.13 49 Click to see details
PRAD -0.083 0.28 -0.041 0.39 50 Click to see details
KIRP -0.1 0.29 -0.137 0.23 32 Click to see details
LUSC -0.091 0.29 -0.008 0.48 38 Click to see details
CESC 0.445 0.35 0.500 0.33 3 Click to see details
ESCA -0.106 0.38 -0.109 0.37 11 Click to see details
LUAD -0.055 0.43 0.126 0.35 12 Click to see details
COAD 0.062 0.44 0.071 0.43 8 Click to see details
PAAD -0.112 0.44 0.200 0.4 4 Click to see details
THCA 0.004 0.49 -0.023 0.43 59 Click to see details
CHOL 0.006 0.49 0.200 0.3 9 Click to see details
CHOL 0.006 0.49 0.200 0.3 9 Click to see details
CHOL 0.006 0.49 0.200 0.3 9 Click to see details
412 hsa-miR-744-5p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT016085 ARL15 ADP ribosylation factor like GTPase 15 1 1
MIRT016086 AGPAT3 1-acylglycerol-3-phosphate O-acyltransferase 3 1 2
MIRT016087 PPTC7 PTC7 protein phosphatase homolog 2 3
MIRT016088 RASSF1 Ras association domain family member 1 1 1
MIRT016089 IER5 immediate early response 5 1 1
MIRT037383 UFC1 ubiquitin-fold modifier conjugating enzyme 1 1 1
MIRT037384 STAM2 signal transducing adaptor molecule 2 1 1
MIRT037385 SRRM2 serine/arginine repetitive matrix 2 1 1
MIRT037386 DCXR dicarbonyl and L-xylulose reductase 1 1
MIRT037387 TSPAN17 tetraspanin 17 1 1
MIRT037388 ACTB actin beta 1 1
MIRT037389 HIST1H2BC histone cluster 1 H2B family member c 1 1
MIRT037390 ATP5B ATP synthase, H+ transporting, mitochondrial F1 complex, beta polypeptide 1 1
MIRT037391 VDAC1 voltage dependent anion channel 1 1 1
MIRT037392 RNASEK ribonuclease K 1 1
MIRT037393 CDK16 cyclin dependent kinase 16 1 1
MIRT037394 ZCCHC24 zinc finger CCHC-type containing 24 1 1
MIRT037395 ARRDC2 arrestin domain containing 2 1 1
MIRT037396 SGMS1 sphingomyelin synthase 1 1 1
MIRT037397 HSPD1 heat shock protein family D (Hsp60) member 1 1 1
MIRT037398 MRPL46 mitochondrial ribosomal protein L46 1 1
MIRT037399 RHEB Ras homolog, mTORC1 binding 1 1
MIRT037400 ND1 NADH dehydrogenase, subunit 1 (complex I) 1 1
MIRT037401 TP53I13 tumor protein p53 inducible protein 13 1 1
MIRT037402 CD44 CD44 molecule (Indian blood group) 1 1
MIRT037403 USP12 ubiquitin specific peptidase 12 1 1
MIRT037404 AP2B1 adaptor related protein complex 2 beta 1 subunit 1 1
MIRT037405 RPL18A ribosomal protein L18a 1 1
MIRT037406 PPP1CA protein phosphatase 1 catalytic subunit alpha 1 1
MIRT037407 TNRC6B trinucleotide repeat containing 6B 1 1
MIRT037408 PXK PX domain containing serine/threonine kinase like 1 1
MIRT037409 TDRKH tudor and KH domain containing 1 1
MIRT037410 PRRC2A proline rich coiled-coil 2A 1 1
MIRT037411 ATP11A ATPase phospholipid transporting 11A 1 1
MIRT037412 NDE1 nudE neurodevelopment protein 1 1 1
MIRT037413 STK16 serine/threonine kinase 16 1 1
MIRT037414 PSMB2 proteasome subunit beta 2 1 1
MIRT037415 EPN1 epsin 1 1 1
MIRT037416 EN2 engrailed homeobox 2 1 1
MIRT037417 LARP1 La ribonucleoprotein domain family member 1 1 1
MIRT037418 SRCAP Snf2 related CREBBP activator protein 1 1
MIRT037419 SMARCD1 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1 1 1
MIRT037420 AP2A2 adaptor related protein complex 2 alpha 2 subunit 1 1
MIRT037421 ACTG1 actin gamma 1 1 1
MIRT037422 PIKFYVE phosphoinositide kinase, FYVE-type zinc finger containing 1 1
MIRT037423 UBE2O ubiquitin conjugating enzyme E2 O 1 1
MIRT037424 KLHL15 kelch like family member 15 1 1
MIRT037425 SECISBP2 SECIS binding protein 2 1 1
MIRT037426 KIAA0922 transmembrane 131 like 1 1
MIRT037427 PTMA prothymosin, alpha 1 1
MIRT037428 WDR45B WD repeat domain 45B 1 1
MIRT037429 ZNF282 zinc finger protein 282 1 1
MIRT037430 GART phosphoribosylglycinamide formyltransferase, phosphoribosylglycinamide synthetase, phosphoribosylaminoimidazole synthetase 1 1
MIRT037431 TNKS tankyrase 1 1
MIRT037432 NOP2 NOP2 nucleolar protein 1 1
MIRT037433 GAK cyclin G associated kinase 1 1
MIRT037434 ATP6 ATP synthase F0 subunit 6 1 1
MIRT037435 DIDO1 death inducer-obliterator 1 1 1
MIRT037436 RPL3 ribosomal protein L3 1 1
MIRT037437 AIMP2 aminoacyl tRNA synthetase complex interacting multifunctional protein 2 1 1
MIRT037438 PIGC phosphatidylinositol glycan anchor biosynthesis class C 1 1
MIRT037439 ARHGEF2 Rho/Rac guanine nucleotide exchange factor 2 1 1
MIRT037440 USP21 ubiquitin specific peptidase 21 1 1
MIRT037441 NUFIP2 NUFIP2, FMR1 interacting protein 2 1 1
MIRT037442 RPS6 ribosomal protein S6 1 1
MIRT037443 ILKAP ILK associated serine/threonine phosphatase 1 1
MIRT037444 COX1 cytochrome c oxidase subunit I 1 1
MIRT037445 VPS37C VPS37C, ESCRT-I subunit 1 1
MIRT037446 CDK12 cyclin dependent kinase 12 1 1
MIRT037447 RBM8A RNA binding motif protein 8A 1 1
MIRT037448 CKB creatine kinase B 1 1
MIRT037449 DHX57 DExH-box helicase 57 1 1
MIRT037450 DDX23 DEAD-box helicase 23 1 1
MIRT037451 ABI3 ABI family member 3 1 1
MIRT037452 GATAD2B GATA zinc finger domain containing 2B 1 1
MIRT037453 PDPK1 3-phosphoinositide dependent protein kinase 1 1 1
MIRT037454 C17orf70 Fanconi anemia core complex associated protein 100 1 1
MIRT037455 SKI SKI proto-oncogene 1 1
MIRT037456 KCTD11 potassium channel tetramerization domain containing 11 1 1
MIRT037457 GNB2L1 receptor for activated C kinase 1 1 1
MIRT037458 NCOA3 nuclear receptor coactivator 3 1 1
MIRT037459 PAK4 p21 (RAC1) activated kinase 4 2 3
MIRT037460 GDI2 GDP dissociation inhibitor 2 1 1
MIRT037461 SLC2A4RG SLC2A4 regulator 1 1
MIRT037462 SLX4 SLX4 structure-specific endonuclease subunit 1 1
MIRT037463 COPA coatomer protein complex subunit alpha 1 1
MIRT037464 GPRASP2 G protein-coupled receptor associated sorting protein 2 1 1
MIRT037465 GGA3 golgi associated, gamma adaptin ear containing, ARF binding protein 3 1 1
MIRT037466 LIMS1 LIM zinc finger domain containing 1 1 1
MIRT037467 COTL1 coactosin like F-actin binding protein 1 1 1
MIRT037468 CAPNS1 calpain small subunit 1 1 1
MIRT037469 FRZB frizzled-related protein 1 1
MIRT037470 UBQLN4 ubiquilin 4 1 1
MIRT037471 NUP153 nucleoporin 153 1 1
MIRT037472 TMEM175 transmembrane protein 175 1 1
MIRT037473 HIST1H2BD histone cluster 1 H2B family member d 1 1
MIRT037474 SREBF1 sterol regulatory element binding transcription factor 1 1 1
MIRT037475 BCL2L12 BCL2 like 12 1 1
MIRT037476 HIST2H2AA3 histone cluster 2 H2A family member a3 1 1
MIRT037477 MINK1 misshapen like kinase 1 1 1
MIRT037478 PDXK pyridoxal kinase 1 1
MIRT037479 FAM110A family with sequence similarity 110 member A 1 1
MIRT037480 ZNF598 zinc finger protein 598 1 1
MIRT037481 ILK integrin linked kinase 1 1
MIRT037482 HINT1 histidine triad nucleotide binding protein 1 1 1
MIRT037483 WBP2 WW domain binding protein 2 1 1
MIRT037484 CYTB cytochrome b 1 1
MIRT037485 SCAMP2 secretory carrier membrane protein 2 1 1
MIRT037486 TRIM33 tripartite motif containing 33 1 1
MIRT037487 SLC25A3 solute carrier family 25 member 3 1 1
MIRT037488 IRS4 insulin receptor substrate 4 1 1
MIRT037489 TSR1 TSR1, ribosome maturation factor 1 1
MIRT037490 TCOF1 treacle ribosome biogenesis factor 1 1 1
MIRT037491 ATXN2L ataxin 2 like 1 1
MIRT037492 MTOR mechanistic target of rapamycin kinase 1 1
MIRT037493 ZNF318 zinc finger protein 318 1 1
MIRT037494 HNRNPC heterogeneous nuclear ribonucleoprotein C (C1/C2) 2 3
MIRT037495 SAMD4B sterile alpha motif domain containing 4B 1 1
MIRT037496 STMN1 stathmin 1 1 1
MIRT037497 SAT1 spermidine/spermine N1-acetyltransferase 1 1 1
MIRT037498 SALL1 spalt like transcription factor 1 1 1
MIRT037499 ZSCAN18 zinc finger and SCAN domain containing 18 1 1
MIRT037500 SLC35D1 solute carrier family 35 member D1 1 1
MIRT037501 TM9SF3 transmembrane 9 superfamily member 3 1 1
MIRT037502 TIAM1 T-cell lymphoma invasion and metastasis 1 1 1
MIRT037503 CHD5 chromodomain helicase DNA binding protein 5 1 1
MIRT037504 BAG6 BCL2 associated athanogene 6 1 1
MIRT037505 MED28 mediator complex subunit 28 1 1
MIRT037506 ANKRD52 ankyrin repeat domain 52 1 1
MIRT037507 MTHFD1 methylenetetrahydrofolate dehydrogenase, cyclohydrolase and formyltetrahydrofolate synthetase 1 1 1
MIRT037508 PPDPF pancreatic progenitor cell differentiation and proliferation factor 1 1
MIRT037509 PRKACA protein kinase cAMP-activated catalytic subunit alpha 1 1
MIRT037510 HPCAL4 hippocalcin like 4 1 1
MIRT037511 ZNF256 zinc finger protein 256 1 1
MIRT037512 CGNL1 cingulin like 1 1 1
MIRT037513 TUBA1B tubulin alpha 1b 1 1
MIRT037514 LNPEP leucyl and cystinyl aminopeptidase 1 1
MIRT037515 PDE4A phosphodiesterase 4A 1 1
MIRT037516 HOXD11 homeobox D11 2 3
MIRT037517 QARS glutaminyl-tRNA synthetase 1 1
MIRT037518 G3BP1 G3BP stress granule assembly factor 1 1 1
MIRT037519 PLEKHM2 pleckstrin homology and RUN domain containing M2 1 1
MIRT037520 POLR2A RNA polymerase II subunit A 1 1
MIRT037521 KIAA1462 junctional cadherin 5 associated 1 1
MIRT037522 SF3A1 splicing factor 3a subunit 1 1 1
MIRT037523 YBX1 Y-box binding protein 1 1 1
MIRT037524 PTGES3 prostaglandin E synthase 3 1 1
MIRT037525 FOXO3 forkhead box O3 1 1
MIRT037526 ATP5G3 ATP synthase, H+ transporting, mitochondrial Fo complex subunit C3 (subunit 9) 1 1
MIRT037527 AARS alanyl-tRNA synthetase 1 1
MIRT037528 ZNF155 zinc finger protein 155 1 1
MIRT037529 NCS1 neuronal calcium sensor 1 1 1
MIRT037530 FKBP4 FK506 binding protein 4 1 1
MIRT037531 ARHGDIA Rho GDP dissociation inhibitor alpha 1 1
MIRT037532 MAPK7 mitogen-activated protein kinase 7 1 1
MIRT037533 AGPAT2 1-acylglycerol-3-phosphate O-acyltransferase 2 1 1
MIRT037534 HIST1H1E histone cluster 1 H1 family member e 1 1
MIRT037535 MLF2 myeloid leukemia factor 2 1 1
MIRT037536 EDC3 enhancer of mRNA decapping 3 1 1
MIRT037537 CHRAC1 chromatin accessibility complex 1 1 1
MIRT037538 WIPF3 WAS/WASL interacting protein family member 3 1 1
MIRT037539 COX2 cytochrome c oxidase subunit II 1 1
MIRT037540 SRSF1 serine and arginine rich splicing factor 1 1 1
MIRT037541 CTNNBIP1 catenin beta interacting protein 1 1 1
MIRT037542 RPL4 ribosomal protein L4 1 1
MIRT037543 COX3 cytochrome c oxidase III 1 1
MIRT037544 DDX54 DEAD-box helicase 54 1 1
MIRT037545 TOB2 transducer of ERBB2, 2 1 1
MIRT037546 MAN2C1 mannosidase alpha class 2C member 1 1 1
MIRT037547 SMCR7L mitochondrial elongation factor 1 1 1
MIRT037548 RPLP1 ribosomal protein lateral stalk subunit P1 1 1
MIRT037549 RAN RAN, member RAS oncogene family 1 1
MIRT037550 NONO non-POU domain containing octamer binding 1 1
MIRT037551 CYB5R3 cytochrome b5 reductase 3 1 1
MIRT037552 SRGAP1 SLIT-ROBO Rho GTPase activating protein 1 1 1
MIRT037553 COLGALT1 collagen beta(1-O)galactosyltransferase 1 1 1
MIRT037554 MGRN1 mahogunin ring finger 1 1 1
MIRT037555 ANAPC1 anaphase promoting complex subunit 1 1 1
MIRT037556 TBX1 T-box 1 1 1
MIRT037557 NXPH4 neurexophilin 4 1 1
MIRT037558 HSPA1B heat shock protein family A (Hsp70) member 1B 1 1
MIRT037559 UBE2A ubiquitin conjugating enzyme E2 A 1 1
MIRT037560 KPNB1 karyopherin subunit beta 1 1 1
MIRT037561 NDUFB10 NADH:ubiquinone oxidoreductase subunit B10 1 1
MIRT037562 SYMPK symplekin 1 1
MIRT037563 SYPL1 synaptophysin like 1 1 1
MIRT037564 LRP3 LDL receptor related protein 3 1 1
MIRT037565 DDX24 DEAD-box helicase 24 1 1
MIRT037566 WDR37 WD repeat domain 37 1 1
MIRT037567 RPS14 ribosomal protein S14 1 1
MIRT037568 FAM53C family with sequence similarity 53 member C 1 1
MIRT037569 NMT1 N-myristoyltransferase 1 1 1
MIRT037570 PAGR1 PAXIP1 associated glutamate rich protein 1 1 1
MIRT037571 AKT2 AKT serine/threonine kinase 2 1 1
MIRT037572 TMEM14C transmembrane protein 14C 1 1
MIRT037573 MEX3D mex-3 RNA binding family member D 1 1
MIRT037574 BRAF B-Raf proto-oncogene, serine/threonine kinase 1 1
MIRT037575 POLR2L RNA polymerase II subunit L 1 1
MIRT037576 SERP1 stress associated endoplasmic reticulum protein 1 1 1
MIRT037577 C8orf33 chromosome 8 open reading frame 33 1 1
MIRT037578 NR1D2 nuclear receptor subfamily 1 group D member 2 1 1
MIRT037579 POLD3 DNA polymerase delta 3, accessory subunit 1 1
MIRT037580 HMGA1 high mobility group AT-hook 1 1 1
MIRT037581 SLC35B4 solute carrier family 35 member B4 1 1
MIRT037582 PELP1 proline, glutamate and leucine rich protein 1 1 1
MIRT037583 PLEKHG2 pleckstrin homology and RhoGEF domain containing G2 1 1
MIRT037584 RPL7A ribosomal protein L7a 1 1
MIRT037585 LAIR1 leukocyte associated immunoglobulin like receptor 1 1 1
MIRT037586 RPL10 ribosomal protein L10 1 1
MIRT037587 MRPS16 mitochondrial ribosomal protein S16 1 1
MIRT037588 SRM spermidine synthase 1 1
MIRT037589 EIF3K eukaryotic translation initiation factor 3 subunit K 1 1
MIRT037590 DESI1 desumoylating isopeptidase 1 1 1
MIRT037591 BET1 Bet1 golgi vesicular membrane trafficking protein 1 1
MIRT037592 HTRA2 HtrA serine peptidase 2 1 1
MIRT037593 LARP6 La ribonucleoprotein domain family member 6 1 1
MIRT037594 NOTCH2 notch 2 1 1
MIRT037595 ADCY9 adenylate cyclase 9 1 1
MIRT037596 C6orf62 chromosome 6 open reading frame 62 1 1
MIRT037597 FBXL19 F-box and leucine rich repeat protein 19 1 1
MIRT037598 L3MBTL2 L3MBTL2, polycomb repressive complex 1 subunit 1 1
MIRT037599 TRIM28 tripartite motif containing 28 1 1
MIRT037600 LGALS3 galectin 3 1 1
MIRT037601 IGSF8 immunoglobulin superfamily member 8 1 1
MIRT037602 LIN37 lin-37 DREAM MuvB core complex component 1 1
MIRT037603 PTPRF protein tyrosine phosphatase, receptor type F 1 1
MIRT037604 MTSS1L MTSS1L, I-BAR domain containing 1 1
MIRT037605 TRMT2A tRNA methyltransferase 2 homolog A 1 1
MIRT037606 DVL1 dishevelled segment polarity protein 1 1 1
MIRT037607 ATP5S ATP synthase, H+ transporting, mitochondrial Fo complex subunit s (factor B) 1 1
MIRT037608 TOR2A torsin family 2 member A 1 1
MIRT037609 RPS6KA5 ribosomal protein S6 kinase A5 1 1
MIRT037610 SMYD4 SET and MYND domain containing 4 1 1
MIRT037611 TJAP1 tight junction associated protein 1 1 1
MIRT037612 IRAK1 interleukin 1 receptor associated kinase 1 1 1
MIRT037613 PPM1M protein phosphatase, Mg2+/Mn2+ dependent 1M 1 1
MIRT037614 EIF4A2 eukaryotic translation initiation factor 4A2 1 1
MIRT037615 GFER growth factor, augmenter of liver regeneration 1 1
MIRT037616 PKP2 plakophilin 2 1 1
MIRT037617 FARSB phenylalanyl-tRNA synthetase beta subunit 1 1
MIRT037618 OPRD1 opioid receptor delta 1 1 1
MIRT037619 CCNY cyclin Y 1 1
MIRT037620 CNOT1 CCR4-NOT transcription complex subunit 1 1 1
MIRT037621 CXCL16 C-X-C motif chemokine ligand 16 1 1
MIRT037622 CEBPA CCAAT/enhancer binding protein alpha 1 1
MIRT037623 DDX11 DEAD/H-box helicase 11 1 1
MIRT037624 URB1 URB1 ribosome biogenesis 1 homolog (S. cerevisiae) 1 1
MIRT037625 SBF1 SET binding factor 1 1 1
MIRT037626 GNB2 G protein subunit beta 2 1 1
MIRT037627 KMT2D lysine methyltransferase 2D 2 3
MIRT037628 DDX17 DEAD-box helicase 17 1 1
MIRT037629 SORBS3 sorbin and SH3 domain containing 3 1 1
MIRT037630 TAPBP TAP binding protein 1 1
MIRT037631 BCR BCR, RhoGEF and GTPase activating protein 1 1
MIRT037632 RPL18 ribosomal protein L18 1 1
MIRT037633 INTS3 integrator complex subunit 3 1 1
MIRT037634 CDC25B cell division cycle 25B 1 1
MIRT037635 LDOC1L retrotransposon Gag like 6 1 1
MIRT037636 TUB tubby bipartite transcription factor 1 1
MIRT037637 NUDT2 nudix hydrolase 2 1 1
MIRT037638 CDAN1 codanin 1 1 1
MIRT037639 MRS2 MRS2, magnesium transporter 1 1
MIRT037640 PYGB glycogen phosphorylase B 1 1
MIRT037641 LDLRAD3 low density lipoprotein receptor class A domain containing 3 1 1
MIRT037642 COL5A1 collagen type V alpha 1 chain 1 1
MIRT037643 ATF7IP activating transcription factor 7 interacting protein 1 1
MIRT037644 AGO1 argonaute 1, RISC catalytic component 1 1
MIRT037645 ZNF212 zinc finger protein 212 1 1
MIRT037646 TSC2 TSC complex subunit 2 1 1
MIRT037647 FASN fatty acid synthase 1 1
MIRT037648 NOL9 nucleolar protein 9 1 1
MIRT037649 CLUH clustered mitochondria homolog 1 1
MIRT037650 PHF8 PHD finger protein 8 1 1
MIRT037651 EIF4G1 eukaryotic translation initiation factor 4 gamma 1 1 1
MIRT037652 TRAPPC12 trafficking protein particle complex 12 1 1
MIRT037653 HOXC11 homeobox C11 1 1
MIRT037654 DGCR14 ess-2 splicing factor homolog 1 1
MIRT037655 SLC25A1 solute carrier family 25 member 1 1 1
MIRT037656 MEX3C mex-3 RNA binding family member C 1 1
MIRT037657 RAI1 retinoic acid induced 1 1 1
MIRT037658 LY6E lymphocyte antigen 6 family member E 1 1
MIRT037659 SEC16A SEC16 homolog A, endoplasmic reticulum export factor 1 1
MIRT037660 RPL37 ribosomal protein L37 1 1
MIRT037661 CNN2 calponin 2 1 1
MIRT037662 ALDH18A1 aldehyde dehydrogenase 18 family member A1 1 1
MIRT037663 POMGNT1 protein O-linked mannose N-acetylglucosaminyltransferase 1 (beta 1,2-) 1 1
MIRT037664 EIF4A1 eukaryotic translation initiation factor 4A1 1 1
MIRT037665 PIM3 Pim-3 proto-oncogene, serine/threonine kinase 1 1
MIRT037666 PTPMT1 protein tyrosine phosphatase, mitochondrial 1 1 1
MIRT037667 NCEH1 neutral cholesterol ester hydrolase 1 1 1
MIRT037668 ART5 ADP-ribosyltransferase 5 1 1
MIRT037669 MRPS2 mitochondrial ribosomal protein S2 1 1
MIRT037670 NCL nucleolin 1 1
MIRT037671 NCKAP5L NCK associated protein 5 like 1 1
MIRT037672 ZCCHC14 zinc finger CCHC-type containing 14 1 1
MIRT037673 CCDC71 coiled-coil domain containing 71 1 1
MIRT037674 SURF4 surfeit 4 1 1
MIRT037675 RPL13 ribosomal protein L13 1 1
MIRT037676 ACTN4 actinin alpha 4 1 1
MIRT037677 PA2G4 proliferation-associated 2G4 1 1
MIRT037678 MIF macrophage migration inhibitory factor 1 1
MIRT037679 UBE2N ubiquitin conjugating enzyme E2 N 1 1
MIRT037680 LYNX1 Ly6/neurotoxin 1 1 1
MIRT037681 TACC3 transforming acidic coiled-coil containing protein 3 1 1
MIRT037682 GSR glutathione-disulfide reductase 1 1
MIRT037683 GSK3A glycogen synthase kinase 3 alpha 1 1
MIRT037684 ZMYM3 zinc finger MYM-type containing 3 1 1
MIRT037685 ERP29 endoplasmic reticulum protein 29 1 1
MIRT037686 MATR3 matrin 3 1 1
MIRT037687 FANCG Fanconi anemia complementation group G 1 1
MIRT037688 FAM83G family with sequence similarity 83 member G 1 1
MIRT037689 DUSP18 dual specificity phosphatase 18 1 1
MIRT037690 MYC MYC proto-oncogene, bHLH transcription factor 3 2
MIRT037691 TSPAN7 tetraspanin 7 1 1
MIRT037692 ATMIN ATM interactor 1 1
MIRT037693 SEPT2 septin 2 1 1
MIRT037694 FOXRED2 FAD dependent oxidoreductase domain containing 2 1 1
MIRT037695 TECR trans-2,3-enoyl-CoA reductase 1 1
MIRT037696 MRPL11 mitochondrial ribosomal protein L11 1 1
MIRT037697 IP6K1 inositol hexakisphosphate kinase 1 1 1
MIRT037698 PSMD4 proteasome 26S subunit, non-ATPase 4 1 1
MIRT037699 SH3GL1 SH3 domain containing GRB2 like 1, endophilin A2 1 1
MIRT037700 CTNNB1 catenin beta 1 1 1
MIRT037701 TMEM189 transmembrane protein 189 1 1
MIRT037702 LDLR low density lipoprotein receptor 1 1
MIRT037703 OGFR opioid growth factor receptor 1 1
MIRT037704 ADAP2 ArfGAP with dual PH domains 2 1 1
MIRT037705 LIPA lipase A, lysosomal acid type 1 1
MIRT037706 SNAPC4 small nuclear RNA activating complex polypeptide 4 1 1
MIRT037707 FBN2 fibrillin 2 1 1
MIRT037708 ZNF704 zinc finger protein 704 1 1
MIRT037709 EIF3M eukaryotic translation initiation factor 3 subunit M 1 1
MIRT037710 SMC1A structural maintenance of chromosomes 1A 1 1
MIRT037711 FZR1 fizzy and cell division cycle 20 related 1 1 1
MIRT037712 NANOS1 nanos C2HC-type zinc finger 1 1 1
MIRT037713 PRR12 proline rich 12 1 1
MIRT037714 PHC2 polyhomeotic homolog 2 1 1
MIRT037715 NOP9 NOP9 nucleolar protein 1 1
MIRT037716 HM13 histocompatibility minor 13 1 1
MIRT037717 PRDX5 peroxiredoxin 5 1 1
MIRT037718 IRGQ immunity related GTPase Q 1 1
MIRT037719 TGFB1 transforming growth factor beta 1 7 2
MIRT037720 MARCH3 membrane associated ring-CH-type finger 3 1 1
MIRT037721 TBX2 T-box 2 1 1
MIRT037722 TSC22D3 TSC22 domain family member 3 1 1
MIRT037723 DUT deoxyuridine triphosphatase 1 1
MIRT037724 FAM171A2 family with sequence similarity 171 member A2 1 1
MIRT037725 FGFR1 fibroblast growth factor receptor 1 1 1
MIRT037726 FRAT1 FRAT1, WNT signaling pathway regulator 1 1
MIRT037727 PSMD11 proteasome 26S subunit, non-ATPase 11 1 1
MIRT037728 PABPC1 poly(A) binding protein cytoplasmic 1 1 1
MIRT037729 ENO1 enolase 1 1 1
MIRT037730 AP3D1 adaptor related protein complex 3 delta 1 subunit 1 1
MIRT037731 TUBA1A tubulin alpha 1a 1 1
MIRT037732 ULK3 unc-51 like kinase 3 1 1
MIRT037733 PIP5K1A phosphatidylinositol-4-phosphate 5-kinase type 1 alpha 1 1
MIRT037734 SLC25A46 solute carrier family 25 member 46 1 1
MIRT037735 MED15 mediator complex subunit 15 1 1
MIRT037736 IRF2BP1 interferon regulatory factor 2 binding protein 1 1 1
MIRT037737 UBA1 ubiquitin like modifier activating enzyme 1 1 1
MIRT037738 ATHL1 protein-glucosylgalactosylhydroxylysine glucosidase 1 1
MIRT037739 CTNNA1 catenin alpha 1 1 1
MIRT037740 ADRM1 adhesion regulating molecule 1 1 1
MIRT037741 CCDC106 coiled-coil domain containing 106 1 1
MIRT054493 EEF1A2 eukaryotic translation elongation factor 1 alpha 2 3 1
MIRT451195 PIN1 peptidylprolyl cis/trans isomerase, NIMA-interacting 1 2 2
MIRT452931 DISC1 disrupted in schizophrenia 1 2 2
MIRT455468 LYPLA2 lysophospholipase II 2 2
MIRT457068 TOR4A torsin family 4 member A 2 2
MIRT464195 VGLL4 vestigial like family member 4 2 4
MIRT483030 KHSRP KH-type splicing regulatory protein 2 4
MIRT486062 CTDNEP1 CTD nuclear envelope phosphatase 1 2 2
MIRT486120 INO80E INO80 complex subunit E 2 2
MIRT486866 DPF1 double PHD fingers 1 2 2
MIRT488343 PAX2 paired box 2 2 2
MIRT488790 POFUT2 protein O-fucosyltransferase 2 2 2
MIRT490249 MFI2 melanotransferrin 2 2
MIRT490264 HAAO 3-hydroxyanthranilate 3,4-dioxygenase 2 2
MIRT490756 SRCIN1 SRC kinase signaling inhibitor 1 2 2
MIRT492321 SETD1B SET domain containing 1B 2 2
MIRT492851 NRGN neurogranin 2 2
MIRT499604 ANKRD45 ankyrin repeat domain 45 2 2
MIRT500189 BARX1 BARX homeobox 1 2 4
MIRT516765 FAM212B family with sequence similarity 212 member B 2 4
MIRT517949 TRIM59 tripartite motif containing 59 2 2
MIRT521182 SCAF4 SR-related CTD associated factor 4 2 2
MIRT526462 OSBPL5 oxysterol binding protein like 5 2 2
MIRT535148 PLEKHG5 pleckstrin homology and RhoGEF domain containing G5 2 2
MIRT569528 AP5Z1 adaptor related protein complex 5 zeta 1 subunit 2 2
MIRT570593 NFIX nuclear factor I X 2 2
MIRT571219 F2R coagulation factor II thrombin receptor 2 2
MIRT574145 MARVELD1 MARVEL domain containing 1 2 2
MIRT608758 CACNA1A calcium voltage-gated channel subunit alpha1 A 2 2
MIRT649509 RAB17 RAB17, member RAS oncogene family 2 2
MIRT692165 RNF207 ring finger protein 207 2 2
MIRT703495 FNDC3B fibronectin type III domain containing 3B 2 2
MIRT711081 NEUROD2 neuronal differentiation 2 2 2
MIRT712090 UNC13A unc-13 homolog A 2 2
MIRT712531 CYTH2 cytohesin 2 2 2
MIRT712755 GMDS GDP-mannose 4,6-dehydratase 2 2
MIRT712893 TGFA transforming growth factor alpha 2 2
MIRT714684 PRX periaxin 2 2
MIRT714723 VPS8 VPS8, CORVET complex subunit 2 2
MIRT714814 NOB1 NIN1/PSMD8 binding protein 1 homolog 2 2
MIRT716774 C1orf229 chromosome 1 open reading frame 229 2 2
MIRT717511 HRNR hornerin 2 2
MIRT717653 THBS2 thrombospondin 2 2 2
MIRT719595 PIAS4 protein inhibitor of activated STAT 4 2 2
MIRT720525 PTGR2 prostaglandin reductase 2 2 2
MIRT724925 VPS18 VPS18, CORVET/HOPS core subunit 2 2
MIRT737146 NOS3 nitric oxide synthase 3 1 0
MIRT756003 SLC7A5 solute carrier family 7 member 5 3 1
miRNA-Drug Associations
miRNA Small Melocule FDA CID Detection Method Condition PMID Year Expression Pattern of miRNA
miR-744 Hexahydro-1,3,5-trinitro-1,3,5-triazine (RDX) NULL 8490 Microarray mouse brain 19270793 2009 down-regulated
miR-744 Tert-butyl hydroperoxide (t-BHP) NULL 6410 Microarray mouse auditory cells 20510889 2010 up-regulated
miR-744 Ursodeoxycholic acid (UDCA) approved 31401 Microarray rat Liver 20689055 2010 up-regulated
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-mir-744 Cisplatin 5460033 NSC119875 approved resistant High Gastric Cancer cell line (SGC-7901)
hsa-mir-744 Dabrafenib 44462760 NSC764134 approved resistant cell line (A375)
hsa-mir-744 Androstenedione 6128 NSC9563 sensitive cell line (MCF-7)
hsa-mir-744 Fluorouracil 3385 NSC19893 approved resistant cell line (OE19)
hsa-mir-744 Fluorouracil 3385 NSC19893 approved resistant cell line (KYSE)
hsa-mir-744 Ceritinib 57379345 NSC776422 approved resistant cell line (H3122)
hsa-mir-744 Cisplatin 5460033 NSC119875 approved resistant cell line (SGC-7901)
hsa-miR-744-5p [1,1'-binaphthalene]-2,2',3,3'-tetrol 316673 NSC245006 sensitive
hsa-miR-744-5p 4-n-[12-[(5-amino-6-chloropyrimidin-4-yl)amino]dodecyl]-6-chloropyrimidine-4,5-diamine 358989 NSC619196 sensitive
hsa-miR-744-5p 5,7-dibromo-2-[(e)-2-(4-hydroxy-3-methoxyphenyl)ethenyl]quinolin-8-ol 135460261 NSC67090 sensitive
hsa-miR-744-5p Benzyl 2-(dibenzylamino)-3-phenylpropanoate 375616 NSC655438 sensitive
hsa-miR-744-5p N'-[(Z)-[(4Z)-2-(1,3-benzodioxol-5-yl)-4-[[4-oxo-4-[2-(trifluoromethyl)anilino]butanoyl]hydrazinylidene]chromen-3-ylidene]amino]-N-[2-(trifluoromethyl)phenyl]butanediamide 6399328 NSC641210 sensitive
hsa-miR-744-5p Paullone analog 47 396411 NSC702373 sensitive
hsa-miR-744-5p Ursa-11,13(18)-dien-28-oic acid-3.beta.-ol 378695 NSC661747 sensitive
hsa-miR-744-5p Tamoxifen 2733525 NSC180973 approved resistant High Breast Cancer cell line (MCF-7, LY2)
hsa-miR-744-5p Cisplatin 5460033 NSC119875 approved resistant High Ovarian Cancer cell line (SKOV3)
hsa-miR-744-5p Carboplatin 38904 NSC241240 approved sensitive High Ovarian Cancer tissue and cell line (MDAH-2274, SKOV3)
hsa-miR-744-5p Gefitinib 123631 NSC715055 approved resistant High Lung Adenocarcinoma cell line (A549)
hsa-miR-744-5p Cisplatin 5460033 NSC119875 approved sensitive High Esophageal Squamous Cell Carcinoma cell line (KYSE410)
hsa-miR-744-5p Tamoxifen 2733525 NSC180973 approved sensitive High Breast Cancer cell line (MCF-7)
hsa-miR-744-5p Cisplatin 5460033 NSC119875 approved resistant High Non-Small Cell Lung Cancer cell line (A549)
hsa-miR-744-5p Vinorelbine 44424639 approved resistant High Breast Cancer cell line (MDA-MB-231)
hsa-miR-744-5p Epirubicin 41867 NSC256942 approved resistant High Breast Cancer cell line (MDA-MB-231)
hsa-miR-744-5p Erlotinib 176870 NSC718781 approved sensitive High Non-Small Cell Lung Cancer tissue
hsa-miR-744-5p Gefitinib 123631 NSC715055 approved sensitive High Non-Small Cell Lung Cancer tissue
hsa-miR-744-5p Sunitinib 5329102 NSC750690 approved sensitive High Renal Cell Cancer tissue
hsa-miR-744-5p Gemcitabine 60750 NSC613327 approved resistant High Pancreatic Cancer cell line (AsPC-1)
hsa-miR-744-5p Sorafenib 216239 NSC747971 approved sensitive Low Hepatocellular Carcinoma cell line (HepG2)
hsa-miR-744-5p Cisplatin 5460033 NSC119875 approved resistant High Gastric Cancer cell line (SGC-7901, BGC-823)
hsa-miR-744-5p Oxaliplatin 6857599 NSC266046 approved resistant Low Colorectal Cancer cell line (HCT-116)
hsa-miR-744-5p Bortezomib 387447 NSC681239 approved sensitive Low Multiple Myeloma tissue
hsa-miR-744-5p Cisplatin 5460033 NSC119875 approved resistant High Non-Small Cell Lung Cancer cell line (A549)
hsa-miR-744-5p Osimertinib 71496458 NSC779217 approved sensitive cell line (HCC827)
hsa-miR-744-5p Osimertinib 71496458 NSC779217 approved resistant cell line (PC9)
hsa-miR-744-5p Cisplatin 5460033 NSC119875 approved sensitive cell line (CAL-27) (cytosolic RNA)
hsa-miR-744-5p Doxorubicin 31703 NSC123127 approved sensitive cell line (HS578T)
hsa-miR-744-5p Cisplatin 5460033 NSC119875 approved resistant cell line (A549)
hsa-miR-744-5p Fluorouracil 3385 NSC19893 approved sensitive cell line (HCT15)
hsa-miR-744-5p 4-Hydroxytamoxifen+Tamoxifen sensitive cell line (LY2)
hsa-miR-744-5p Ethanol+Tamoxifen sensitive cell line (LY2)
hsa-miR-744-5p Methotrexate 126941 NSC740 approved resistant cell line (HT29)
hsa-miR-744-5p Fluorouracil 3385 NSC19893 approved resistant cell line (KM12C) (72 h)
hsa-miR-744-5p Cisplatin 5460033 NSC119875 approved resistant cell line (RPMI2650)
hsa-miR-744-5p Sunitinib 5329102 NSC750690 approved resistant tissue (CardA)
hsa-miR-744-5p Gemcitabine 60750 NSC613327 approved resistant cell line (MDA-231)
hsa-miR-744-5p Paclitaxel 36314 NSC125973 approved sensitive cell line (PC3PR20)
hsa-miR-744-5p Cisplatin 5460033 NSC119875 approved sensitive cell line (A549)
hsa-miR-744-5p Gemcitabine 60750 NSC613327 approved resistant cell line (PANC-1) (1500 ng/ml)
hsa-miR-744-5p Gemcitabine 60750 NSC613327 approved resistant cell line (Panc1-GR4)
hsa-miR-744-5p Ceritinib 57379345 NSC776422 approved resistant cell line (H3122)
hsa-miR-744-5p Cisplatin 5460033 NSC119875 approved sensitive cell line (H23)

Error report submission