pre-miRNA Information
pre-miRNA hsa-mir-744   
Genomic Coordinates chr17: 12081899 - 12081996
Synonyms MIRN744, hsa-mir-744, MIR744
Description Homo sapiens miR-744 stem-loop
Comment This sequence was identified as a miRNA candidate by Berezikov et al. using RAKE and MPSS techniques .
RNA Secondary Structure
Associated Diseases

Mature miRNA Information
Mature miRNA hsa-miR-744-5p
Sequence 11| UGCGGGGCUAGGGCUAACAGCA |32
Evidence Experimental
Experiments Cloned
DRVs in miRNA
Mutant ID Mutant Position Mutant Source
COSN23015028 1 COSMIC
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs557969425 1 dbSNP
rs748252260 4 dbSNP
rs1470408501 7 dbSNP
rs1178657616 10 dbSNP
Putative Targets

miRNA Expression profile
Human miRNA Tissue Atlas
miRNAs in Extracellular Vesicles
Circulating MicroRNA Expression Profiling
Biomarker Information
Biomarker ID Name Type Discovered From Mode Level Source Testing Methods
B6B8SM miR-744-5p Safety Biomarker (SAF) Clinical/Experimental Data Expression Increase Urine Real-time polymerase chain reaction
Gene Information
Gene Symbol SMYD4   
Synonyms ZMYND21
Description SET and MYND domain containing 4
Transcript NM_052928   
Expression
Putative miRNA Targets on SMYD4
3'UTR of SMYD4
(miRNA target sites are highlighted)
>SMYD4|NM_052928|3'UTR
   1 GGTTCCAGGAGGATTTTGACCCACAGAAAAGGAGCCCATGGAACACAAGTTAAAGAGGTTTTGCTGGCCAGGTATGGTGG
  81 CTCACGCCTGTAATCCCAGCACTTTGGGAGGCTAAGGTGGGCGGATCACCTGATGTCAGGAGTTCAAGACCAGCCTGGCC
 161 AACATGGTGAAACCCCATCTTTACTAAAAATACAAAAAACTAGCCAGGCGTGGTGGTGGGCACCTGTAATCCCAGCTACT
 241 TGGGAGGCTGAGGCAGGAGAATCTCTTGAACCCAGGAGGCGGAGGTTGCAGTGAGCCGAGATCGCTCCACTGCACTCCAG
 321 CCCAGGTGACAGTGTGAGACTCCATCTCAAAAAAAAAAATAAGAGGCCGGGTGCGGTGGCTCAAGCCTGTAATCCCAGCA
 401 CTTTGGGAGGCCGAGGCAGGCAGATCACGAGGTCAGGAGATCCAGACCATCCTGGCTAACACGGTGAAACCCCGTCTCTA
 481 CTAAAAATACAAAAAAATTAGTCGGGCGTGGTGGCGGACGCCTGTATTCACAGCTACTCGGGAGGTTGAGGCAGGAGAAT
 561 GGGGTGAACCCGGGAGGAAGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGTGACAGAGCCAGACTC
 641 CATCTCAAAGAAAAAAAAAAAATATTAAGAGGTTCTGCTGCCAGATGTGGGTTCTGTGGGTCGGGTGTGGGTTCTGTGGG
 721 TCGGGTGTGGGTTCTGCAGACCAGGTGCGGATTCTGTGTAGGTTCTGCAGGCCCAGTGTAGAGGCTCACACCTGTAATCC
 801 CAGTACTTTGAGACGCTGAGGTGGGAGGATCACTTGAGCCCAGGAGTTCAAAACCAGCCTGGGCAATATAGTGAGACCGT
 881 ATCACTACAAAAAAGTTTTTTTAGTTCACCGAGCATGGTGGCACATGCCTGTAGTCCCACCTACTCGAGAAGCTGAGATA
 961 GGGTCACCTGAGCCTGGTAGGCTGAGGCTGCAGTGAGCCAAGATCGCACTACTGCACTCCAGCCTGGGTGACAGAGTAAG
1041 ACCCTGTCTCAACAAAAAAATAACAGGTTCTGTTGCTGCTGAGCTTTCGTCAGGAAGATAAGACTTTCCCAACAGTCCGA
1121 AGCCTAGGATATGAGGGCTGAGGAGGACTCAAACCGTTGCAGTCAGAGAGACACCTATTTTGGTGAATATTTTTTGAAAT
1201 AGTTAAGTGGCCTCCAGTACAAACTCCCAGTTCCCAGAAAAGACTTAAAACTAGTATCTGGAGATTCCAAGTCCTTTAAA
1281 AGGATTTTAGCTGATCTGCAGGCATCTGGATGTTAGCCTGGGGTTTTGGCTGGATTCCACCTCGCTCAGTGATGATAGTC
1361 TGTTTCCCTGGAACATTCCTGTGGTTTTAGTAGTAATGAGATGTGTGCACCACTCCAGTGGGAACTGAAGCTCTTAGTAG
1441 TTACATTGTAATTAAAAAAGAATTATAAAACAAGAAATCAGCAAGCCTGCTTACCTCCAGAGACACACCGTTCCACTTAC
1521 AGTATCTAGCTTCCTCGACTCCTTTGTTAAAATCGTGGAGTATGAACCGTGACCAGAGAAGTAAATATGGAGCCGTTTTA
1601 TTGAGCAGTTTCCTCCAGGGATGACGGCTGTCAGTGTGTTTCCTGCCAGTTTTCCAGTCCTTACTCTCTGCCCTTCATTC
1681 TGTACTCTTGGCAGAGTCAGTAACCAACCACTAATAAAATCAAAGTTGTAGTAAAGACTTTATAACACATAAAAAAAAAA
1761 AAAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' acGACA-AU-CGGGA---UCGGGGCGu 5'
            |||| || |::||   :|||| |: 
Target 5' ttCTGTGTAGGTTCTGCAGGCCCAGTg 3'
752 - 778 112.00 -15.26
2
miRNA  3' acgaCAA--UCGGGAUCGGGGCGu 5'
              |||  || || ||||: || 
Target 5' aggaGTTCAAGACC-AGCCTGGCc 3'
138 - 160 111.00 -12.10
3
miRNA  3' acgacaauCGGG-AUCGGGGCGu 5'
                  |||: |||:||| | 
Target 5' tggcacatGCCTGTAGTCCCACc 3'
919 - 941 110.00 -15.30
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN30102408 11 COSMIC
COSN30455254 22 COSMIC
COSN30477379 26 COSMIC
COSN29461844 70 COSMIC
COSN30528806 77 COSMIC
COSN30131182 99 COSMIC
COSN30498715 107 COSMIC
COSN30125228 149 COSMIC
COSN28827523 162 COSMIC
COSN8602427 169 COSMIC
COSN23934959 306 COSMIC
COSN27205323 650 COSMIC
COSN6653533 665 COSMIC
COSN27573303 685 COSMIC
COSN28202145 685 COSMIC
COSN26117957 735 COSMIC
COSN6653531 899 COSMIC
COSN26663726 1102 COSMIC
COSN6653526 1296 COSMIC
COSN31555663 1298 COSMIC
COSN28970239 1354 COSMIC
COSN20113248 1472 COSMIC
COSN31486259 1500 COSMIC
COSN6653523 1568 COSMIC
COSN4625554 1792 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs1215516415 2 dbSNP
rs1340457802 3 dbSNP
rs8073100 5 dbSNP
rs372461281 7 dbSNP
rs760098415 10 dbSNP
rs1201430380 12 dbSNP
rs774363670 17 dbSNP
rs771025941 18 dbSNP
rs749477248 20 dbSNP
rs369177207 21 dbSNP
rs773471223 24 dbSNP
rs769617766 26 dbSNP
rs1429943973 32 dbSNP
rs971819798 37 dbSNP
rs763487223 39 dbSNP
rs376379424 41 dbSNP
rs1245951421 44 dbSNP
rs1428393435 47 dbSNP
rs1182242276 49 dbSNP
rs1332833872 53 dbSNP
rs1024230015 57 dbSNP
rs759392176 60 dbSNP
rs1402926004 62 dbSNP
rs543669885 65 dbSNP
rs1316393105 68 dbSNP
rs958807063 70 dbSNP
rs1401194765 72 dbSNP
rs867601446 82 dbSNP
rs1000473127 83 dbSNP
rs1381633065 85 dbSNP
rs902985179 86 dbSNP
rs1442016920 90 dbSNP
rs1204022948 97 dbSNP
rs1213069820 100 dbSNP
rs1281589440 102 dbSNP
rs1020624331 109 dbSNP
rs966853167 111 dbSNP
rs1022441128 112 dbSNP
rs1008791704 114 dbSNP
rs1466701303 116 dbSNP
rs763747201 117 dbSNP
rs1469869275 123 dbSNP
rs1156869791 129 dbSNP
rs1050118404 135 dbSNP
rs1303095773 142 dbSNP
rs779475680 145 dbSNP
rs1364029325 151 dbSNP
rs1423976410 161 dbSNP
rs55971207 162 dbSNP
rs564449695 164 dbSNP
rs1050607306 167 dbSNP
rs541398855 182 dbSNP
rs1037421306 184 dbSNP
rs778660184 186 dbSNP
rs901546834 189 dbSNP
rs1457199978 196 dbSNP
rs908683628 199 dbSNP
rs1290948671 201 dbSNP
rs1238691286 209 dbSNP
rs1267854537 210 dbSNP
rs1047773314 215 dbSNP
rs1437428712 220 dbSNP
rs1200411902 223 dbSNP
rs1467099166 226 dbSNP
rs1440404226 231 dbSNP
rs1163088135 240 dbSNP
rs1264881640 254 dbSNP
rs1040274335 259 dbSNP
rs940640915 265 dbSNP
rs1245615280 273 dbSNP
rs1164171248 276 dbSNP
rs1396271024 277 dbSNP
rs551238116 280 dbSNP
rs1305198478 281 dbSNP
rs201543797 285 dbSNP
rs1378385307 293 dbSNP
rs572510778 296 dbSNP
rs555693798 297 dbSNP
rs958693039 298 dbSNP
rs1311962922 303 dbSNP
rs1265769371 304 dbSNP
rs1439286370 306 dbSNP
rs1252922853 322 dbSNP
rs1390666673 323 dbSNP
rs1292372974 324 dbSNP
rs1241405944 325 dbSNP
rs1446934940 328 dbSNP
rs1188884343 333 dbSNP
rs1372813264 335 dbSNP
rs1460787487 336 dbSNP
rs181372421 338 dbSNP
rs1402002502 339 dbSNP
rs1465858940 342 dbSNP
rs374551922 343 dbSNP
rs1048859367 344 dbSNP
rs1379979471 352 dbSNP
rs1397660924 360 dbSNP
rs916637775 360 dbSNP
rs930482879 360 dbSNP
rs1156556422 361 dbSNP
rs1259808935 363 dbSNP
rs1438820395 368 dbSNP
rs1380625959 369 dbSNP
rs991348052 373 dbSNP
rs1452426298 374 dbSNP
rs556292442 375 dbSNP
rs960719550 380 dbSNP
rs1489532304 384 dbSNP
rs1259150145 386 dbSNP
rs1477919958 396 dbSNP
rs927981837 401 dbSNP
rs1467129154 407 dbSNP
rs1354720300 412 dbSNP
rs539279367 413 dbSNP
rs1380502337 428 dbSNP
rs1232563056 429 dbSNP
rs1340923853 446 dbSNP
rs1223076482 449 dbSNP
rs926049713 455 dbSNP
rs570507554 462 dbSNP
rs966925303 463 dbSNP
rs769429321 464 dbSNP
rs1022556884 470 dbSNP
rs1485159641 474 dbSNP
rs1219472141 475 dbSNP
rs547211633 476 dbSNP
rs1011045136 477 dbSNP
rs1364253550 478 dbSNP
rs76855930 481 dbSNP
rs147793690 483 dbSNP
rs1386825894 484 dbSNP
rs1369158114 488 dbSNP
rs1422604690 497 dbSNP
rs967635202 501 dbSNP
rs1020088105 503 dbSNP
rs1009134441 504 dbSNP
rs1451482260 507 dbSNP
rs954634702 508 dbSNP
rs1404110057 509 dbSNP
rs1301122024 510 dbSNP
rs567764892 511 dbSNP
rs1220071515 513 dbSNP
rs539280963 516 dbSNP
rs1376973614 518 dbSNP
rs144228295 519 dbSNP
rs763947087 520 dbSNP
rs1037871986 526 dbSNP
rs1287372704 530 dbSNP
rs563660599 537 dbSNP
rs1434869113 539 dbSNP
rs760589783 540 dbSNP
rs550326975 541 dbSNP
rs1191437582 542 dbSNP
rs1249145169 543 dbSNP
rs1437286250 544 dbSNP
rs1160007266 545 dbSNP
rs1380822348 546 dbSNP
rs1423988800 555 dbSNP
rs1161404700 558 dbSNP
rs1351434039 560 dbSNP
rs565502349 563 dbSNP
rs1048976993 568 dbSNP
rs1297833382 569 dbSNP
rs533394417 570 dbSNP
rs1193061909 572 dbSNP
rs763365444 572 dbSNP
rs1488704019 578 dbSNP
rs1288512252 579 dbSNP
rs1209161411 583 dbSNP
rs895013382 593 dbSNP
rs564593273 596 dbSNP
rs1055200436 601 dbSNP
rs1221765276 602 dbSNP
rs188574422 603 dbSNP
rs139446522 604 dbSNP
rs1306281652 605 dbSNP
rs1180066649 607 dbSNP
rs1415619199 629 dbSNP
rs1275682608 646 dbSNP
rs1398922578 650 dbSNP
rs78108640 651 dbSNP
rs1340729306 659 dbSNP
rs1055941051 661 dbSNP
rs1332076853 663 dbSNP
rs1380609650 663 dbSNP
rs1451019295 663 dbSNP
rs796389357 663 dbSNP
rs62088124 665 dbSNP
rs1293944782 666 dbSNP
rs915488507 668 dbSNP
rs1200178679 669 dbSNP
rs1258091885 669 dbSNP
rs528909263 675 dbSNP
rs1239130058 676 dbSNP
rs1172964618 678 dbSNP
rs1473118912 680 dbSNP
rs989769262 682 dbSNP
rs1421248281 685 dbSNP
rs542262441 690 dbSNP
rs1478896257 697 dbSNP
rs1171667040 698 dbSNP
rs1405354124 700 dbSNP
rs925952846 703 dbSNP
rs1412828495 716 dbSNP
rs150592455 717 dbSNP
rs1430699272 722 dbSNP
rs967518592 723 dbSNP
rs556215179 724 dbSNP
rs987335804 725 dbSNP
rs954493092 727 dbSNP
rs966163584 730 dbSNP
rs1419563513 737 dbSNP
rs1489149930 737 dbSNP
rs771511500 737 dbSNP
rs1194198883 738 dbSNP
rs1428840406 740 dbSNP
rs1477188684 741 dbSNP
rs1174364088 742 dbSNP
rs1426004552 743 dbSNP
rs1296906388 745 dbSNP
rs1028916547 747 dbSNP
rs996070556 748 dbSNP
rs539606594 749 dbSNP
rs1330127346 750 dbSNP
rs1433887282 751 dbSNP
rs1265583637 757 dbSNP
rs28607902 760 dbSNP
rs766486664 763 dbSNP
rs1345125394 771 dbSNP
rs886141216 773 dbSNP
rs762983856 775 dbSNP
rs11867211 776 dbSNP
rs1027527133 780 dbSNP
rs1442094166 784 dbSNP
rs577005860 787 dbSNP
rs1267963512 789 dbSNP
rs553829355 791 dbSNP
rs1202547673 793 dbSNP
rs1247308900 799 dbSNP
rs895074921 799 dbSNP
rs1157002797 803 dbSNP
rs1014385444 808 dbSNP
rs895951575 814 dbSNP
rs939198808 815 dbSNP
rs906576617 821 dbSNP
rs1325117283 822 dbSNP
rs1331392651 827 dbSNP
rs773448825 840 dbSNP
rs1055992475 855 dbSNP
rs937565947 859 dbSNP
rs904760085 860 dbSNP
rs1318045106 864 dbSNP
rs1378978646 873 dbSNP
rs533596380 878 dbSNP
rs946037137 879 dbSNP
rs1242097999 887 dbSNP
rs913323241 888 dbSNP
rs932868580 894 dbSNP
rs987512736 896 dbSNP
rs1176833802 898 dbSNP
rs72822450 899 dbSNP
rs1330647187 900 dbSNP
rs921734269 901 dbSNP
rs977285980 910 dbSNP
rs762246075 911 dbSNP
rs1018644021 927 dbSNP
rs983205640 931 dbSNP
rs1425818625 937 dbSNP
rs963347625 938 dbSNP
rs1390972363 941 dbSNP
rs1016590990 943 dbSNP
rs547754799 946 dbSNP
rs1472552004 947 dbSNP
rs1027246484 954 dbSNP
rs994530087 963 dbSNP
rs959510211 977 dbSNP
rs1246702470 980 dbSNP
rs1284618809 982 dbSNP
rs1369336325 993 dbSNP
rs776915233 1005 dbSNP
rs183860696 1006 dbSNP
rs769041064 1007 dbSNP
rs1238066101 1008 dbSNP
rs1199772612 1010 dbSNP
rs747506689 1011 dbSNP
rs896001001 1012 dbSNP
rs1372897408 1026 dbSNP
rs1034509170 1027 dbSNP
rs1003778852 1037 dbSNP
rs780663526 1041 dbSNP
rs1284488456 1043 dbSNP
rs1425070705 1053 dbSNP
rs1465688543 1061 dbSNP
rs1301815906 1067 dbSNP
rs1399953878 1068 dbSNP
rs904813356 1088 dbSNP
rs180710676 1089 dbSNP
rs1339609471 1092 dbSNP
rs550247182 1095 dbSNP
rs865811174 1099 dbSNP
rs1280330630 1113 dbSNP
rs1318940546 1114 dbSNP
rs1308300648 1115 dbSNP
rs893909484 1118 dbSNP
rs533566475 1119 dbSNP
rs1484499897 1135 dbSNP
rs1201550141 1136 dbSNP
rs1487517293 1145 dbSNP
rs1196380544 1146 dbSNP
rs1264867527 1147 dbSNP
rs557796324 1155 dbSNP
rs189147542 1156 dbSNP
rs1041335691 1170 dbSNP
rs944202957 1174 dbSNP
rs531188302 1175 dbSNP
rs974611201 1192 dbSNP
rs1397897760 1194 dbSNP
rs1299856701 1196 dbSNP
rs982924043 1207 dbSNP
rs1386449696 1211 dbSNP
rs1299216594 1224 dbSNP
rs950446339 1237 dbSNP
rs1234526774 1253 dbSNP
rs1285927815 1258 dbSNP
rs73976121 1263 dbSNP
rs1219222047 1268 dbSNP
rs879866859 1273 dbSNP
rs1264401195 1278 dbSNP
rs1438095910 1292 dbSNP
rs1133109 1296 dbSNP
rs79039200 1301 dbSNP
rs1442017680 1302 dbSNP
rs950433222 1309 dbSNP
rs1379588754 1330 dbSNP
rs1024570451 1338 dbSNP
rs1003484164 1340 dbSNP
rs796200695 1341 dbSNP
rs1360951026 1342 dbSNP
rs991772471 1343 dbSNP
rs1211226970 1344 dbSNP
rs542225498 1345 dbSNP
rs531776575 1348 dbSNP
rs1387416290 1350 dbSNP
rs1351086812 1355 dbSNP
rs959139138 1359 dbSNP
rs1033388306 1360 dbSNP
rs1240684299 1367 dbSNP
rs888645681 1368 dbSNP
rs1242991606 1370 dbSNP
rs1001745422 1373 dbSNP
rs1321501265 1374 dbSNP
rs138793855 1374 dbSNP
rs562793556 1379 dbSNP
rs1009422769 1388 dbSNP
rs1263299404 1396 dbSNP
rs893857509 1397 dbSNP
rs760214609 1400 dbSNP
rs1213735318 1419 dbSNP
rs1237063554 1426 dbSNP
rs1331713541 1436 dbSNP
rs1325634182 1438 dbSNP
rs1053884164 1446 dbSNP
rs1360134568 1460 dbSNP
rs1408364064 1460 dbSNP
rs1423028944 1461 dbSNP
rs997249038 1462 dbSNP
rs904648767 1463 dbSNP
rs899872164 1464 dbSNP
rs1458642818 1471 dbSNP
rs368391868 1474 dbSNP
rs1398229722 1483 dbSNP
rs1423657456 1485 dbSNP
rs944324007 1495 dbSNP
rs1191166052 1496 dbSNP
rs1379152910 1501 dbSNP
rs1478663499 1501 dbSNP
rs1246737101 1506 dbSNP
rs142647598 1507 dbSNP
rs1226940552 1509 dbSNP
rs560625483 1510 dbSNP
rs753517853 1511 dbSNP
rs1047177298 1514 dbSNP
rs1051787475 1518 dbSNP
rs1213949534 1519 dbSNP
rs931486689 1520 dbSNP
rs920335161 1532 dbSNP
rs997513701 1536 dbSNP
rs12951668 1537 dbSNP
rs1039104792 1545 dbSNP
rs1179873681 1549 dbSNP
rs941878435 1554 dbSNP
rs982197326 1555 dbSNP
rs1421841066 1559 dbSNP
rs577610149 1562 dbSNP
rs1276620303 1567 dbSNP
rs11062 1568 dbSNP
rs540053573 1569 dbSNP
rs1340108459 1580 dbSNP
rs1299086100 1594 dbSNP
rs1380364336 1595 dbSNP
rs1020887285 1605 dbSNP
rs1402203703 1612 dbSNP
rs1357749377 1615 dbSNP
rs987939169 1625 dbSNP
rs1032841061 1626 dbSNP
rs1047655265 1633 dbSNP
rs996965882 1634 dbSNP
rs1427876496 1636 dbSNP
rs574173006 1641 dbSNP
rs917814938 1656 dbSNP
rs1476581173 1659 dbSNP
rs1019586948 1660 dbSNP
rs1261975982 1664 dbSNP
rs991827016 1664 dbSNP
rs959024942 1665 dbSNP
rs1008183944 1668 dbSNP
rs1424573079 1670 dbSNP
rs926376123 1680 dbSNP
rs887323545 1681 dbSNP
rs1178871487 1683 dbSNP
rs1193877076 1696 dbSNP
rs1047333821 1699 dbSNP
rs1486655139 1700 dbSNP
rs1235463290 1704 dbSNP
rs1399771748 1713 dbSNP
rs1296792790 1719 dbSNP
rs1209167197 1725 dbSNP
rs1401499874 1728 dbSNP
rs1270222286 1734 dbSNP
rs1442929726 1740 dbSNP
rs931478414 1741 dbSNP
rs1280646472 1742 dbSNP
rs1348561364 1753 dbSNP
rs979567960 1755 dbSNP
rs1215585555 1760 dbSNP
rs1283659647 1769 dbSNP
rs752945690 1769 dbSNP
rs761420148 1769 dbSNP
rs968926505 1771 dbSNP
rs1477077476 1772 dbSNP
rs61125278 1772 dbSNP
rs554278134 1773 dbSNP
rs937746555 1773 dbSNP
rs1278952965 1775 dbSNP
rs138952947 1776 dbSNP
rs537438022 1776 dbSNP
rs1239363564 1777 dbSNP
rs1433645486 1777 dbSNP
rs926384895 1778 dbSNP
rs1216502731 1782 dbSNP
rs1010383683 1786 dbSNP
rs1355585342 1786 dbSNP
rs71375539 1788 dbSNP
rs1205566922 1792 dbSNP
rs775771365 1797 dbSNP
rs1302566822 1800 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
     
Conditions Flp-In T-REx 293-hAGO1 cells
Location of target site CDS
Original Description (Extracted from the article) ... Validation of interactions identified by CLASH suppports their reliability. ...

- Helwak A; Kudla G; Dudnakova T; Tollervey D, 2013, Cell.

Article - Helwak A; Kudla G; Dudnakova T; Tollervey D
- Cell, 2013
MicroRNAs (miRNAs) play key roles in gene regulation, but reliable bioinformatic or experimental identification of their targets remains difficult. To provide an unbiased view of human miRNA targets, we developed a technique for ligation and sequencing of miRNA-target RNA duplexes associated with human AGO1. Here, we report data sets of more than 18,000 high-confidence miRNA-mRNA interactions. The binding of most miRNAs includes the 5' seed region, but around 60% of seed interactions are noncanonical, containing bulged or mismatched nucleotides. Moreover, seed interactions are generally accompanied by specific, nonseed base pairing. 18% of miRNA-mRNA interactions involve the miRNA 3' end, with little evidence for 5' contacts, and some of these were functionally validated. Analyses of miRNA:mRNA base pairing showed that miRNA species systematically differ in their target RNA interactions, and strongly overrepresented motifs were found in the interaction sites of several miRNAs. We speculate that these affect the response of RISC to miRNA-target binding.
LinkOut: [PMID: 23622248]
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
GSE38974 Chronic obstructive pulmonary disease 0.698 5.2e-5 0.733 1.5e-5 25 Click to see details
GSE34608 Pulmonary tuberculosis and sarcoidosis -0.514 1.0e-2 -0.550 6.0e-3 20 Click to see details
GSE26953 Aortic valvular endothelial cells -0.361 4.2e-2 -0.430 1.8e-2 24 Click to see details
GSE19536 Breast cancer 0.124 1.1e-1 0.116 1.3e-1 100 Click to see details
GSE19350 CNS germ cell tumors -0.322 1.5e-1 -0.385 1.1e-1 12 Click to see details
GSE35602 Colorectal cancer stromal tissue -0.206 1.6e-1 -0.230 1.3e-1 25 Click to see details
GSE21687 Ependynoma primary tumors -0.116 1.8e-1 -0.224 3.8e-2 64 Click to see details
GSE32688 Pancreatic cancer 0.165 1.8e-1 0.099 2.9e-1 32 Click to see details
GSE15076 Monocyte-derived dendritic cells 0.34 1.9e-1 0.150 3.5e-1 9 Click to see details
GSE21032 Prostate cancer 0.086 2.2e-1 -0.042 3.5e-1 83 Click to see details
GSE19783 ER- ER- breast cancer 0.079 2.4e-1 0.073 2.6e-1 79 Click to see details
GSE19783 ER+ ER+ breast cancer 0.105 3.3e-1 0.035 4.4e-1 20 Click to see details
GSE38226 Liver fibrosis 0.097 3.4e-1 0.171 2.3e-1 21 Click to see details
GSE28260 Renal cortex and medulla -0.11 3.6e-1 -0.022 4.7e-1 13 Click to see details
GSE42095 Differentiated embryonic stem cells 0.036 4.4e-1 -0.057 4.0e-1 23 Click to see details
GSE28544 Breast cancer -0.021 4.6e-1 -0.201 1.7e-1 24 Click to see details
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
THCA 0.187 0.08 0.208 0.06 59 Click to see details
PAAD 0.79 0.11 0.600 0.2 4 Click to see details
UCEC 0.221 0.18 0.189 0.22 19 Click to see details
BLCA -0.172 0.25 -0.098 0.35 18 Click to see details
COAD -0.267 0.26 -0.167 0.35 8 Click to see details
LUSC 0.106 0.26 0.146 0.19 38 Click to see details
LUAD -0.176 0.29 -0.189 0.28 12 Click to see details
CHOL 0.15 0.35 0.267 0.24 9 Click to see details
STAD -0.058 0.38 -0.096 0.3 32 Click to see details
KICH 0.066 0.38 0.197 0.17 25 Click to see details
LIHC -0.036 0.4 -0.017 0.45 49 Click to see details
BRCA 0.019 0.43 -0.048 0.33 84 Click to see details
CESC 0.21 0.43 -0.500 0.33 3 Click to see details
KIRP -0.028 0.44 -0.085 0.32 32 Click to see details
KIRC 0.007 0.48 -0.015 0.45 68 Click to see details
HNSC 0.004 0.49 -0.010 0.47 42 Click to see details
ESCA -0.008 0.49 -0.064 0.43 11 Click to see details
PRAD -0.001 0.5 -0.149 0.15 50 Click to see details
PCPG -1 0.5 -1.000 0.5 3 Click to see details
PCPG -1 0.5 -1.000 0.5 3 Click to see details
PCPG -1 0.5 -1.000 0.5 3 Click to see details
412 hsa-miR-744-5p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT016085 ARL15 ADP ribosylation factor like GTPase 15 1 1
MIRT016086 AGPAT3 1-acylglycerol-3-phosphate O-acyltransferase 3 1 2
MIRT016087 PPTC7 PTC7 protein phosphatase homolog 2 3
MIRT016088 RASSF1 Ras association domain family member 1 1 1
MIRT016089 IER5 immediate early response 5 1 1
MIRT037383 UFC1 ubiquitin-fold modifier conjugating enzyme 1 1 1
MIRT037384 STAM2 signal transducing adaptor molecule 2 1 1
MIRT037385 SRRM2 serine/arginine repetitive matrix 2 1 1
MIRT037386 DCXR dicarbonyl and L-xylulose reductase 1 1
MIRT037387 TSPAN17 tetraspanin 17 1 1
MIRT037388 ACTB actin beta 1 1
MIRT037389 HIST1H2BC histone cluster 1 H2B family member c 1 1
MIRT037390 ATP5B ATP synthase, H+ transporting, mitochondrial F1 complex, beta polypeptide 1 1
MIRT037391 VDAC1 voltage dependent anion channel 1 1 1
MIRT037392 RNASEK ribonuclease K 1 1
MIRT037393 CDK16 cyclin dependent kinase 16 1 1
MIRT037394 ZCCHC24 zinc finger CCHC-type containing 24 1 1
MIRT037395 ARRDC2 arrestin domain containing 2 1 1
MIRT037396 SGMS1 sphingomyelin synthase 1 1 1
MIRT037397 HSPD1 heat shock protein family D (Hsp60) member 1 1 1
MIRT037398 MRPL46 mitochondrial ribosomal protein L46 1 1
MIRT037399 RHEB Ras homolog, mTORC1 binding 1 1
MIRT037400 ND1 NADH dehydrogenase, subunit 1 (complex I) 1 1
MIRT037401 TP53I13 tumor protein p53 inducible protein 13 1 1
MIRT037402 CD44 CD44 molecule (Indian blood group) 1 1
MIRT037403 USP12 ubiquitin specific peptidase 12 1 1
MIRT037404 AP2B1 adaptor related protein complex 2 beta 1 subunit 1 1
MIRT037405 RPL18A ribosomal protein L18a 1 1
MIRT037406 PPP1CA protein phosphatase 1 catalytic subunit alpha 1 1
MIRT037407 TNRC6B trinucleotide repeat containing 6B 1 1
MIRT037408 PXK PX domain containing serine/threonine kinase like 1 1
MIRT037409 TDRKH tudor and KH domain containing 1 1
MIRT037410 PRRC2A proline rich coiled-coil 2A 1 1
MIRT037411 ATP11A ATPase phospholipid transporting 11A 1 1
MIRT037412 NDE1 nudE neurodevelopment protein 1 1 1
MIRT037413 STK16 serine/threonine kinase 16 1 1
MIRT037414 PSMB2 proteasome subunit beta 2 1 1
MIRT037415 EPN1 epsin 1 1 1
MIRT037416 EN2 engrailed homeobox 2 1 1
MIRT037417 LARP1 La ribonucleoprotein domain family member 1 1 1
MIRT037418 SRCAP Snf2 related CREBBP activator protein 1 1
MIRT037419 SMARCD1 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1 1 1
MIRT037420 AP2A2 adaptor related protein complex 2 alpha 2 subunit 1 1
MIRT037421 ACTG1 actin gamma 1 1 1
MIRT037422 PIKFYVE phosphoinositide kinase, FYVE-type zinc finger containing 1 1
MIRT037423 UBE2O ubiquitin conjugating enzyme E2 O 1 1
MIRT037424 KLHL15 kelch like family member 15 1 1
MIRT037425 SECISBP2 SECIS binding protein 2 1 1
MIRT037426 KIAA0922 transmembrane 131 like 1 1
MIRT037427 PTMA prothymosin, alpha 1 1
MIRT037428 WDR45B WD repeat domain 45B 1 1
MIRT037429 ZNF282 zinc finger protein 282 1 1
MIRT037430 GART phosphoribosylglycinamide formyltransferase, phosphoribosylglycinamide synthetase, phosphoribosylaminoimidazole synthetase 1 1
MIRT037431 TNKS tankyrase 1 1
MIRT037432 NOP2 NOP2 nucleolar protein 1 1
MIRT037433 GAK cyclin G associated kinase 1 1
MIRT037434 ATP6 ATP synthase F0 subunit 6 1 1
MIRT037435 DIDO1 death inducer-obliterator 1 1 1
MIRT037436 RPL3 ribosomal protein L3 1 1
MIRT037437 AIMP2 aminoacyl tRNA synthetase complex interacting multifunctional protein 2 1 1
MIRT037438 PIGC phosphatidylinositol glycan anchor biosynthesis class C 1 1
MIRT037439 ARHGEF2 Rho/Rac guanine nucleotide exchange factor 2 1 1
MIRT037440 USP21 ubiquitin specific peptidase 21 1 1
MIRT037441 NUFIP2 NUFIP2, FMR1 interacting protein 2 1 1
MIRT037442 RPS6 ribosomal protein S6 1 1
MIRT037443 ILKAP ILK associated serine/threonine phosphatase 1 1
MIRT037444 COX1 cytochrome c oxidase subunit I 1 1
MIRT037445 VPS37C VPS37C, ESCRT-I subunit 1 1
MIRT037446 CDK12 cyclin dependent kinase 12 1 1
MIRT037447 RBM8A RNA binding motif protein 8A 1 1
MIRT037448 CKB creatine kinase B 1 1
MIRT037449 DHX57 DExH-box helicase 57 1 1
MIRT037450 DDX23 DEAD-box helicase 23 1 1
MIRT037451 ABI3 ABI family member 3 1 1
MIRT037452 GATAD2B GATA zinc finger domain containing 2B 1 1
MIRT037453 PDPK1 3-phosphoinositide dependent protein kinase 1 1 1
MIRT037454 C17orf70 Fanconi anemia core complex associated protein 100 1 1
MIRT037455 SKI SKI proto-oncogene 1 1
MIRT037456 KCTD11 potassium channel tetramerization domain containing 11 1 1
MIRT037457 GNB2L1 receptor for activated C kinase 1 1 1
MIRT037458 NCOA3 nuclear receptor coactivator 3 1 1
MIRT037459 PAK4 p21 (RAC1) activated kinase 4 2 3
MIRT037460 GDI2 GDP dissociation inhibitor 2 1 1
MIRT037461 SLC2A4RG SLC2A4 regulator 1 1
MIRT037462 SLX4 SLX4 structure-specific endonuclease subunit 1 1
MIRT037463 COPA coatomer protein complex subunit alpha 1 1
MIRT037464 GPRASP2 G protein-coupled receptor associated sorting protein 2 1 1
MIRT037465 GGA3 golgi associated, gamma adaptin ear containing, ARF binding protein 3 1 1
MIRT037466 LIMS1 LIM zinc finger domain containing 1 1 1
MIRT037467 COTL1 coactosin like F-actin binding protein 1 1 1
MIRT037468 CAPNS1 calpain small subunit 1 1 1
MIRT037469 FRZB frizzled-related protein 1 1
MIRT037470 UBQLN4 ubiquilin 4 1 1
MIRT037471 NUP153 nucleoporin 153 1 1
MIRT037472 TMEM175 transmembrane protein 175 1 1
MIRT037473 HIST1H2BD histone cluster 1 H2B family member d 1 1
MIRT037474 SREBF1 sterol regulatory element binding transcription factor 1 1 1
MIRT037475 BCL2L12 BCL2 like 12 1 1
MIRT037476 HIST2H2AA3 histone cluster 2 H2A family member a3 1 1
MIRT037477 MINK1 misshapen like kinase 1 1 1
MIRT037478 PDXK pyridoxal kinase 1 1
MIRT037479 FAM110A family with sequence similarity 110 member A 1 1
MIRT037480 ZNF598 zinc finger protein 598 1 1
MIRT037481 ILK integrin linked kinase 1 1
MIRT037482 HINT1 histidine triad nucleotide binding protein 1 1 1
MIRT037483 WBP2 WW domain binding protein 2 1 1
MIRT037484 CYTB cytochrome b 1 1
MIRT037485 SCAMP2 secretory carrier membrane protein 2 1 1
MIRT037486 TRIM33 tripartite motif containing 33 1 1
MIRT037487 SLC25A3 solute carrier family 25 member 3 1 1
MIRT037488 IRS4 insulin receptor substrate 4 1 1
MIRT037489 TSR1 TSR1, ribosome maturation factor 1 1
MIRT037490 TCOF1 treacle ribosome biogenesis factor 1 1 1
MIRT037491 ATXN2L ataxin 2 like 1 1
MIRT037492 MTOR mechanistic target of rapamycin kinase 1 1
MIRT037493 ZNF318 zinc finger protein 318 1 1
MIRT037494 HNRNPC heterogeneous nuclear ribonucleoprotein C (C1/C2) 2 3
MIRT037495 SAMD4B sterile alpha motif domain containing 4B 1 1
MIRT037496 STMN1 stathmin 1 1 1
MIRT037497 SAT1 spermidine/spermine N1-acetyltransferase 1 1 1
MIRT037498 SALL1 spalt like transcription factor 1 1 1
MIRT037499 ZSCAN18 zinc finger and SCAN domain containing 18 1 1
MIRT037500 SLC35D1 solute carrier family 35 member D1 1 1
MIRT037501 TM9SF3 transmembrane 9 superfamily member 3 1 1
MIRT037502 TIAM1 T-cell lymphoma invasion and metastasis 1 1 1
MIRT037503 CHD5 chromodomain helicase DNA binding protein 5 1 1
MIRT037504 BAG6 BCL2 associated athanogene 6 1 1
MIRT037505 MED28 mediator complex subunit 28 1 1
MIRT037506 ANKRD52 ankyrin repeat domain 52 1 1
MIRT037507 MTHFD1 methylenetetrahydrofolate dehydrogenase, cyclohydrolase and formyltetrahydrofolate synthetase 1 1 1
MIRT037508 PPDPF pancreatic progenitor cell differentiation and proliferation factor 1 1
MIRT037509 PRKACA protein kinase cAMP-activated catalytic subunit alpha 1 1
MIRT037510 HPCAL4 hippocalcin like 4 1 1
MIRT037511 ZNF256 zinc finger protein 256 1 1
MIRT037512 CGNL1 cingulin like 1 1 1
MIRT037513 TUBA1B tubulin alpha 1b 1 1
MIRT037514 LNPEP leucyl and cystinyl aminopeptidase 1 1
MIRT037515 PDE4A phosphodiesterase 4A 1 1
MIRT037516 HOXD11 homeobox D11 2 3
MIRT037517 QARS glutaminyl-tRNA synthetase 1 1
MIRT037518 G3BP1 G3BP stress granule assembly factor 1 1 1
MIRT037519 PLEKHM2 pleckstrin homology and RUN domain containing M2 1 1
MIRT037520 POLR2A RNA polymerase II subunit A 1 1
MIRT037521 KIAA1462 junctional cadherin 5 associated 1 1
MIRT037522 SF3A1 splicing factor 3a subunit 1 1 1
MIRT037523 YBX1 Y-box binding protein 1 1 1
MIRT037524 PTGES3 prostaglandin E synthase 3 1 1
MIRT037525 FOXO3 forkhead box O3 1 1
MIRT037526 ATP5G3 ATP synthase, H+ transporting, mitochondrial Fo complex subunit C3 (subunit 9) 1 1
MIRT037527 AARS alanyl-tRNA synthetase 1 1
MIRT037528 ZNF155 zinc finger protein 155 1 1
MIRT037529 NCS1 neuronal calcium sensor 1 1 1
MIRT037530 FKBP4 FK506 binding protein 4 1 1
MIRT037531 ARHGDIA Rho GDP dissociation inhibitor alpha 1 1
MIRT037532 MAPK7 mitogen-activated protein kinase 7 1 1
MIRT037533 AGPAT2 1-acylglycerol-3-phosphate O-acyltransferase 2 1 1
MIRT037534 HIST1H1E histone cluster 1 H1 family member e 1 1
MIRT037535 MLF2 myeloid leukemia factor 2 1 1
MIRT037536 EDC3 enhancer of mRNA decapping 3 1 1
MIRT037537 CHRAC1 chromatin accessibility complex 1 1 1
MIRT037538 WIPF3 WAS/WASL interacting protein family member 3 1 1
MIRT037539 COX2 cytochrome c oxidase subunit II 1 1
MIRT037540 SRSF1 serine and arginine rich splicing factor 1 1 1
MIRT037541 CTNNBIP1 catenin beta interacting protein 1 1 1
MIRT037542 RPL4 ribosomal protein L4 1 1
MIRT037543 COX3 cytochrome c oxidase III 1 1
MIRT037544 DDX54 DEAD-box helicase 54 1 1
MIRT037545 TOB2 transducer of ERBB2, 2 1 1
MIRT037546 MAN2C1 mannosidase alpha class 2C member 1 1 1
MIRT037547 SMCR7L mitochondrial elongation factor 1 1 1
MIRT037548 RPLP1 ribosomal protein lateral stalk subunit P1 1 1
MIRT037549 RAN RAN, member RAS oncogene family 1 1
MIRT037550 NONO non-POU domain containing octamer binding 1 1
MIRT037551 CYB5R3 cytochrome b5 reductase 3 1 1
MIRT037552 SRGAP1 SLIT-ROBO Rho GTPase activating protein 1 1 1
MIRT037553 COLGALT1 collagen beta(1-O)galactosyltransferase 1 1 1
MIRT037554 MGRN1 mahogunin ring finger 1 1 1
MIRT037555 ANAPC1 anaphase promoting complex subunit 1 1 1
MIRT037556 TBX1 T-box 1 1 1
MIRT037557 NXPH4 neurexophilin 4 1 1
MIRT037558 HSPA1B heat shock protein family A (Hsp70) member 1B 1 1
MIRT037559 UBE2A ubiquitin conjugating enzyme E2 A 1 1
MIRT037560 KPNB1 karyopherin subunit beta 1 1 1
MIRT037561 NDUFB10 NADH:ubiquinone oxidoreductase subunit B10 1 1
MIRT037562 SYMPK symplekin 1 1
MIRT037563 SYPL1 synaptophysin like 1 1 1
MIRT037564 LRP3 LDL receptor related protein 3 1 1
MIRT037565 DDX24 DEAD-box helicase 24 1 1
MIRT037566 WDR37 WD repeat domain 37 1 1
MIRT037567 RPS14 ribosomal protein S14 1 1
MIRT037568 FAM53C family with sequence similarity 53 member C 1 1
MIRT037569 NMT1 N-myristoyltransferase 1 1 1
MIRT037570 PAGR1 PAXIP1 associated glutamate rich protein 1 1 1
MIRT037571 AKT2 AKT serine/threonine kinase 2 1 1
MIRT037572 TMEM14C transmembrane protein 14C 1 1
MIRT037573 MEX3D mex-3 RNA binding family member D 1 1
MIRT037574 BRAF B-Raf proto-oncogene, serine/threonine kinase 1 1
MIRT037575 POLR2L RNA polymerase II subunit L 1 1
MIRT037576 SERP1 stress associated endoplasmic reticulum protein 1 1 1
MIRT037577 C8orf33 chromosome 8 open reading frame 33 1 1
MIRT037578 NR1D2 nuclear receptor subfamily 1 group D member 2 1 1
MIRT037579 POLD3 DNA polymerase delta 3, accessory subunit 1 1
MIRT037580 HMGA1 high mobility group AT-hook 1 1 1
MIRT037581 SLC35B4 solute carrier family 35 member B4 1 1
MIRT037582 PELP1 proline, glutamate and leucine rich protein 1 1 1
MIRT037583 PLEKHG2 pleckstrin homology and RhoGEF domain containing G2 1 1
MIRT037584 RPL7A ribosomal protein L7a 1 1
MIRT037585 LAIR1 leukocyte associated immunoglobulin like receptor 1 1 1
MIRT037586 RPL10 ribosomal protein L10 1 1
MIRT037587 MRPS16 mitochondrial ribosomal protein S16 1 1
MIRT037588 SRM spermidine synthase 1 1
MIRT037589 EIF3K eukaryotic translation initiation factor 3 subunit K 1 1
MIRT037590 DESI1 desumoylating isopeptidase 1 1 1
MIRT037591 BET1 Bet1 golgi vesicular membrane trafficking protein 1 1
MIRT037592 HTRA2 HtrA serine peptidase 2 1 1
MIRT037593 LARP6 La ribonucleoprotein domain family member 6 1 1
MIRT037594 NOTCH2 notch 2 1 1
MIRT037595 ADCY9 adenylate cyclase 9 1 1
MIRT037596 C6orf62 chromosome 6 open reading frame 62 1 1
MIRT037597 FBXL19 F-box and leucine rich repeat protein 19 1 1
MIRT037598 L3MBTL2 L3MBTL2, polycomb repressive complex 1 subunit 1 1
MIRT037599 TRIM28 tripartite motif containing 28 1 1
MIRT037600 LGALS3 galectin 3 1 1
MIRT037601 IGSF8 immunoglobulin superfamily member 8 1 1
MIRT037602 LIN37 lin-37 DREAM MuvB core complex component 1 1
MIRT037603 PTPRF protein tyrosine phosphatase, receptor type F 1 1
MIRT037604 MTSS1L MTSS1L, I-BAR domain containing 1 1
MIRT037605 TRMT2A tRNA methyltransferase 2 homolog A 1 1
MIRT037606 DVL1 dishevelled segment polarity protein 1 1 1
MIRT037607 ATP5S ATP synthase, H+ transporting, mitochondrial Fo complex subunit s (factor B) 1 1
MIRT037608 TOR2A torsin family 2 member A 1 1
MIRT037609 RPS6KA5 ribosomal protein S6 kinase A5 1 1
MIRT037610 SMYD4 SET and MYND domain containing 4 1 1
MIRT037611 TJAP1 tight junction associated protein 1 1 1
MIRT037612 IRAK1 interleukin 1 receptor associated kinase 1 1 1
MIRT037613 PPM1M protein phosphatase, Mg2+/Mn2+ dependent 1M 1 1
MIRT037614 EIF4A2 eukaryotic translation initiation factor 4A2 1 1
MIRT037615 GFER growth factor, augmenter of liver regeneration 1 1
MIRT037616 PKP2 plakophilin 2 1 1
MIRT037617 FARSB phenylalanyl-tRNA synthetase beta subunit 1 1
MIRT037618 OPRD1 opioid receptor delta 1 1 1
MIRT037619 CCNY cyclin Y 1 1
MIRT037620 CNOT1 CCR4-NOT transcription complex subunit 1 1 1
MIRT037621 CXCL16 C-X-C motif chemokine ligand 16 1 1
MIRT037622 CEBPA CCAAT/enhancer binding protein alpha 1 1
MIRT037623 DDX11 DEAD/H-box helicase 11 1 1
MIRT037624 URB1 URB1 ribosome biogenesis 1 homolog (S. cerevisiae) 1 1
MIRT037625 SBF1 SET binding factor 1 1 1
MIRT037626 GNB2 G protein subunit beta 2 1 1
MIRT037627 KMT2D lysine methyltransferase 2D 2 3
MIRT037628 DDX17 DEAD-box helicase 17 1 1
MIRT037629 SORBS3 sorbin and SH3 domain containing 3 1 1
MIRT037630 TAPBP TAP binding protein 1 1
MIRT037631 BCR BCR, RhoGEF and GTPase activating protein 1 1
MIRT037632 RPL18 ribosomal protein L18 1 1
MIRT037633 INTS3 integrator complex subunit 3 1 1
MIRT037634 CDC25B cell division cycle 25B 1 1
MIRT037635 LDOC1L retrotransposon Gag like 6 1 1
MIRT037636 TUB tubby bipartite transcription factor 1 1
MIRT037637 NUDT2 nudix hydrolase 2 1 1
MIRT037638 CDAN1 codanin 1 1 1
MIRT037639 MRS2 MRS2, magnesium transporter 1 1
MIRT037640 PYGB glycogen phosphorylase B 1 1
MIRT037641 LDLRAD3 low density lipoprotein receptor class A domain containing 3 1 1
MIRT037642 COL5A1 collagen type V alpha 1 chain 1 1
MIRT037643 ATF7IP activating transcription factor 7 interacting protein 1 1
MIRT037644 AGO1 argonaute 1, RISC catalytic component 1 1
MIRT037645 ZNF212 zinc finger protein 212 1 1
MIRT037646 TSC2 TSC complex subunit 2 1 1
MIRT037647 FASN fatty acid synthase 1 1
MIRT037648 NOL9 nucleolar protein 9 1 1
MIRT037649 CLUH clustered mitochondria homolog 1 1
MIRT037650 PHF8 PHD finger protein 8 1 1
MIRT037651 EIF4G1 eukaryotic translation initiation factor 4 gamma 1 1 1
MIRT037652 TRAPPC12 trafficking protein particle complex 12 1 1
MIRT037653 HOXC11 homeobox C11 1 1
MIRT037654 DGCR14 ess-2 splicing factor homolog 1 1
MIRT037655 SLC25A1 solute carrier family 25 member 1 1 1
MIRT037656 MEX3C mex-3 RNA binding family member C 1 1
MIRT037657 RAI1 retinoic acid induced 1 1 1
MIRT037658 LY6E lymphocyte antigen 6 family member E 1 1
MIRT037659 SEC16A SEC16 homolog A, endoplasmic reticulum export factor 1 1
MIRT037660 RPL37 ribosomal protein L37 1 1
MIRT037661 CNN2 calponin 2 1 1
MIRT037662 ALDH18A1 aldehyde dehydrogenase 18 family member A1 1 1
MIRT037663 POMGNT1 protein O-linked mannose N-acetylglucosaminyltransferase 1 (beta 1,2-) 1 1
MIRT037664 EIF4A1 eukaryotic translation initiation factor 4A1 1 1
MIRT037665 PIM3 Pim-3 proto-oncogene, serine/threonine kinase 1 1
MIRT037666 PTPMT1 protein tyrosine phosphatase, mitochondrial 1 1 1
MIRT037667 NCEH1 neutral cholesterol ester hydrolase 1 1 1
MIRT037668 ART5 ADP-ribosyltransferase 5 1 1
MIRT037669 MRPS2 mitochondrial ribosomal protein S2 1 1
MIRT037670 NCL nucleolin 1 1
MIRT037671 NCKAP5L NCK associated protein 5 like 1 1
MIRT037672 ZCCHC14 zinc finger CCHC-type containing 14 1 1
MIRT037673 CCDC71 coiled-coil domain containing 71 1 1
MIRT037674 SURF4 surfeit 4 1 1
MIRT037675 RPL13 ribosomal protein L13 1 1
MIRT037676 ACTN4 actinin alpha 4 1 1
MIRT037677 PA2G4 proliferation-associated 2G4 1 1
MIRT037678 MIF macrophage migration inhibitory factor 1 1
MIRT037679 UBE2N ubiquitin conjugating enzyme E2 N 1 1
MIRT037680 LYNX1 Ly6/neurotoxin 1 1 1
MIRT037681 TACC3 transforming acidic coiled-coil containing protein 3 1 1
MIRT037682 GSR glutathione-disulfide reductase 1 1
MIRT037683 GSK3A glycogen synthase kinase 3 alpha 1 1
MIRT037684 ZMYM3 zinc finger MYM-type containing 3 1 1
MIRT037685 ERP29 endoplasmic reticulum protein 29 1 1
MIRT037686 MATR3 matrin 3 1 1
MIRT037687 FANCG Fanconi anemia complementation group G 1 1
MIRT037688 FAM83G family with sequence similarity 83 member G 1 1
MIRT037689 DUSP18 dual specificity phosphatase 18 1 1
MIRT037690 MYC MYC proto-oncogene, bHLH transcription factor 3 2
MIRT037691 TSPAN7 tetraspanin 7 1 1
MIRT037692 ATMIN ATM interactor 1 1
MIRT037693 SEPT2 septin 2 1 1
MIRT037694 FOXRED2 FAD dependent oxidoreductase domain containing 2 1 1
MIRT037695 TECR trans-2,3-enoyl-CoA reductase 1 1
MIRT037696 MRPL11 mitochondrial ribosomal protein L11 1 1
MIRT037697 IP6K1 inositol hexakisphosphate kinase 1 1 1
MIRT037698 PSMD4 proteasome 26S subunit, non-ATPase 4 1 1
MIRT037699 SH3GL1 SH3 domain containing GRB2 like 1, endophilin A2 1 1
MIRT037700 CTNNB1 catenin beta 1 1 1
MIRT037701 TMEM189 transmembrane protein 189 1 1
MIRT037702 LDLR low density lipoprotein receptor 1 1
MIRT037703 OGFR opioid growth factor receptor 1 1
MIRT037704 ADAP2 ArfGAP with dual PH domains 2 1 1
MIRT037705 LIPA lipase A, lysosomal acid type 1 1
MIRT037706 SNAPC4 small nuclear RNA activating complex polypeptide 4 1 1
MIRT037707 FBN2 fibrillin 2 1 1
MIRT037708 ZNF704 zinc finger protein 704 1 1
MIRT037709 EIF3M eukaryotic translation initiation factor 3 subunit M 1 1
MIRT037710 SMC1A structural maintenance of chromosomes 1A 1 1
MIRT037711 FZR1 fizzy and cell division cycle 20 related 1 1 1
MIRT037712 NANOS1 nanos C2HC-type zinc finger 1 1 1
MIRT037713 PRR12 proline rich 12 1 1
MIRT037714 PHC2 polyhomeotic homolog 2 1 1
MIRT037715 NOP9 NOP9 nucleolar protein 1 1
MIRT037716 HM13 histocompatibility minor 13 1 1
MIRT037717 PRDX5 peroxiredoxin 5 1 1
MIRT037718 IRGQ immunity related GTPase Q 1 1
MIRT037719 TGFB1 transforming growth factor beta 1 7 2
MIRT037720 MARCH3 membrane associated ring-CH-type finger 3 1 1
MIRT037721 TBX2 T-box 2 1 1
MIRT037722 TSC22D3 TSC22 domain family member 3 1 1
MIRT037723 DUT deoxyuridine triphosphatase 1 1
MIRT037724 FAM171A2 family with sequence similarity 171 member A2 1 1
MIRT037725 FGFR1 fibroblast growth factor receptor 1 1 1
MIRT037726 FRAT1 FRAT1, WNT signaling pathway regulator 1 1
MIRT037727 PSMD11 proteasome 26S subunit, non-ATPase 11 1 1
MIRT037728 PABPC1 poly(A) binding protein cytoplasmic 1 1 1
MIRT037729 ENO1 enolase 1 1 1
MIRT037730 AP3D1 adaptor related protein complex 3 delta 1 subunit 1 1
MIRT037731 TUBA1A tubulin alpha 1a 1 1
MIRT037732 ULK3 unc-51 like kinase 3 1 1
MIRT037733 PIP5K1A phosphatidylinositol-4-phosphate 5-kinase type 1 alpha 1 1
MIRT037734 SLC25A46 solute carrier family 25 member 46 1 1
MIRT037735 MED15 mediator complex subunit 15 1 1
MIRT037736 IRF2BP1 interferon regulatory factor 2 binding protein 1 1 1
MIRT037737 UBA1 ubiquitin like modifier activating enzyme 1 1 1
MIRT037738 ATHL1 protein-glucosylgalactosylhydroxylysine glucosidase 1 1
MIRT037739 CTNNA1 catenin alpha 1 1 1
MIRT037740 ADRM1 adhesion regulating molecule 1 1 1
MIRT037741 CCDC106 coiled-coil domain containing 106 1 1
MIRT054493 EEF1A2 eukaryotic translation elongation factor 1 alpha 2 3 1
MIRT451195 PIN1 peptidylprolyl cis/trans isomerase, NIMA-interacting 1 2 2
MIRT452931 DISC1 disrupted in schizophrenia 1 2 2
MIRT455468 LYPLA2 lysophospholipase II 2 2
MIRT457068 TOR4A torsin family 4 member A 2 2
MIRT464195 VGLL4 vestigial like family member 4 2 4
MIRT483030 KHSRP KH-type splicing regulatory protein 2 4
MIRT486062 CTDNEP1 CTD nuclear envelope phosphatase 1 2 2
MIRT486120 INO80E INO80 complex subunit E 2 2
MIRT486866 DPF1 double PHD fingers 1 2 2
MIRT488343 PAX2 paired box 2 2 2
MIRT488790 POFUT2 protein O-fucosyltransferase 2 2 2
MIRT490249 MFI2 melanotransferrin 2 2
MIRT490264 HAAO 3-hydroxyanthranilate 3,4-dioxygenase 2 2
MIRT490756 SRCIN1 SRC kinase signaling inhibitor 1 2 2
MIRT492321 SETD1B SET domain containing 1B 2 2
MIRT492851 NRGN neurogranin 2 2
MIRT499604 ANKRD45 ankyrin repeat domain 45 2 2
MIRT500189 BARX1 BARX homeobox 1 2 4
MIRT516765 FAM212B family with sequence similarity 212 member B 2 4
MIRT517949 TRIM59 tripartite motif containing 59 2 2
MIRT521182 SCAF4 SR-related CTD associated factor 4 2 2
MIRT526462 OSBPL5 oxysterol binding protein like 5 2 2
MIRT535148 PLEKHG5 pleckstrin homology and RhoGEF domain containing G5 2 2
MIRT569528 AP5Z1 adaptor related protein complex 5 zeta 1 subunit 2 2
MIRT570593 NFIX nuclear factor I X 2 2
MIRT571219 F2R coagulation factor II thrombin receptor 2 2
MIRT574145 MARVELD1 MARVEL domain containing 1 2 2
MIRT608758 CACNA1A calcium voltage-gated channel subunit alpha1 A 2 2
MIRT649509 RAB17 RAB17, member RAS oncogene family 2 2
MIRT692165 RNF207 ring finger protein 207 2 2
MIRT703495 FNDC3B fibronectin type III domain containing 3B 2 2
MIRT711081 NEUROD2 neuronal differentiation 2 2 2
MIRT712090 UNC13A unc-13 homolog A 2 2
MIRT712531 CYTH2 cytohesin 2 2 2
MIRT712755 GMDS GDP-mannose 4,6-dehydratase 2 2
MIRT712893 TGFA transforming growth factor alpha 2 2
MIRT714684 PRX periaxin 2 2
MIRT714723 VPS8 VPS8, CORVET complex subunit 2 2
MIRT714814 NOB1 NIN1/PSMD8 binding protein 1 homolog 2 2
MIRT716774 C1orf229 chromosome 1 open reading frame 229 2 2
MIRT717511 HRNR hornerin 2 2
MIRT717653 THBS2 thrombospondin 2 2 2
MIRT719595 PIAS4 protein inhibitor of activated STAT 4 2 2
MIRT720525 PTGR2 prostaglandin reductase 2 2 2
MIRT724925 VPS18 VPS18, CORVET/HOPS core subunit 2 2
MIRT737146 NOS3 nitric oxide synthase 3 1 0
MIRT756003 SLC7A5 solute carrier family 7 member 5 3 1
miRNA-Drug Associations
miRNA Small Melocule FDA CID Detection Method Condition PMID Year Expression Pattern of miRNA
miR-744 Hexahydro-1,3,5-trinitro-1,3,5-triazine (RDX) NULL 8490 Microarray mouse brain 19270793 2009 down-regulated
miR-744 Tert-butyl hydroperoxide (t-BHP) NULL 6410 Microarray mouse auditory cells 20510889 2010 up-regulated
miR-744 Ursodeoxycholic acid (UDCA) approved 31401 Microarray rat Liver 20689055 2010 up-regulated
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-mir-744 Cisplatin 5460033 NSC119875 approved resistant High Gastric Cancer cell line (SGC-7901)
hsa-mir-744 Dabrafenib 44462760 NSC764134 approved resistant cell line (A375)
hsa-mir-744 Androstenedione 6128 NSC9563 sensitive cell line (MCF-7)
hsa-mir-744 Fluorouracil 3385 NSC19893 approved resistant cell line (OE19)
hsa-mir-744 Fluorouracil 3385 NSC19893 approved resistant cell line (KYSE)
hsa-mir-744 Ceritinib 57379345 NSC776422 approved resistant cell line (H3122)
hsa-mir-744 Cisplatin 5460033 NSC119875 approved resistant cell line (SGC-7901)
hsa-miR-744-5p [1,1'-binaphthalene]-2,2',3,3'-tetrol 316673 NSC245006 sensitive
hsa-miR-744-5p 4-n-[12-[(5-amino-6-chloropyrimidin-4-yl)amino]dodecyl]-6-chloropyrimidine-4,5-diamine 358989 NSC619196 sensitive
hsa-miR-744-5p 5,7-dibromo-2-[(e)-2-(4-hydroxy-3-methoxyphenyl)ethenyl]quinolin-8-ol 135460261 NSC67090 sensitive
hsa-miR-744-5p Benzyl 2-(dibenzylamino)-3-phenylpropanoate 375616 NSC655438 sensitive
hsa-miR-744-5p N'-[(Z)-[(4Z)-2-(1,3-benzodioxol-5-yl)-4-[[4-oxo-4-[2-(trifluoromethyl)anilino]butanoyl]hydrazinylidene]chromen-3-ylidene]amino]-N-[2-(trifluoromethyl)phenyl]butanediamide 6399328 NSC641210 sensitive
hsa-miR-744-5p Paullone analog 47 396411 NSC702373 sensitive
hsa-miR-744-5p Ursa-11,13(18)-dien-28-oic acid-3.beta.-ol 378695 NSC661747 sensitive
hsa-miR-744-5p Tamoxifen 2733525 NSC180973 approved resistant High Breast Cancer cell line (MCF-7, LY2)
hsa-miR-744-5p Cisplatin 5460033 NSC119875 approved resistant High Ovarian Cancer cell line (SKOV3)
hsa-miR-744-5p Carboplatin 38904 NSC241240 approved sensitive High Ovarian Cancer tissue and cell line (MDAH-2274, SKOV3)
hsa-miR-744-5p Gefitinib 123631 NSC715055 approved resistant High Lung Adenocarcinoma cell line (A549)
hsa-miR-744-5p Cisplatin 5460033 NSC119875 approved sensitive High Esophageal Squamous Cell Carcinoma cell line (KYSE410)
hsa-miR-744-5p Tamoxifen 2733525 NSC180973 approved sensitive High Breast Cancer cell line (MCF-7)
hsa-miR-744-5p Cisplatin 5460033 NSC119875 approved resistant High Non-Small Cell Lung Cancer cell line (A549)
hsa-miR-744-5p Vinorelbine 44424639 approved resistant High Breast Cancer cell line (MDA-MB-231)
hsa-miR-744-5p Epirubicin 41867 NSC256942 approved resistant High Breast Cancer cell line (MDA-MB-231)
hsa-miR-744-5p Erlotinib 176870 NSC718781 approved sensitive High Non-Small Cell Lung Cancer tissue
hsa-miR-744-5p Gefitinib 123631 NSC715055 approved sensitive High Non-Small Cell Lung Cancer tissue
hsa-miR-744-5p Sunitinib 5329102 NSC750690 approved sensitive High Renal Cell Cancer tissue
hsa-miR-744-5p Gemcitabine 60750 NSC613327 approved resistant High Pancreatic Cancer cell line (AsPC-1)
hsa-miR-744-5p Sorafenib 216239 NSC747971 approved sensitive Low Hepatocellular Carcinoma cell line (HepG2)
hsa-miR-744-5p Cisplatin 5460033 NSC119875 approved resistant High Gastric Cancer cell line (SGC-7901, BGC-823)
hsa-miR-744-5p Oxaliplatin 6857599 NSC266046 approved resistant Low Colorectal Cancer cell line (HCT-116)
hsa-miR-744-5p Bortezomib 387447 NSC681239 approved sensitive Low Multiple Myeloma tissue
hsa-miR-744-5p Cisplatin 5460033 NSC119875 approved resistant High Non-Small Cell Lung Cancer cell line (A549)
hsa-miR-744-5p Osimertinib 71496458 NSC779217 approved sensitive cell line (HCC827)
hsa-miR-744-5p Osimertinib 71496458 NSC779217 approved resistant cell line (PC9)
hsa-miR-744-5p Cisplatin 5460033 NSC119875 approved sensitive cell line (CAL-27) (cytosolic RNA)
hsa-miR-744-5p Doxorubicin 31703 NSC123127 approved sensitive cell line (HS578T)
hsa-miR-744-5p Cisplatin 5460033 NSC119875 approved resistant cell line (A549)
hsa-miR-744-5p Fluorouracil 3385 NSC19893 approved sensitive cell line (HCT15)
hsa-miR-744-5p 4-Hydroxytamoxifen+Tamoxifen sensitive cell line (LY2)
hsa-miR-744-5p Ethanol+Tamoxifen sensitive cell line (LY2)
hsa-miR-744-5p Methotrexate 126941 NSC740 approved resistant cell line (HT29)
hsa-miR-744-5p Fluorouracil 3385 NSC19893 approved resistant cell line (KM12C) (72 h)
hsa-miR-744-5p Cisplatin 5460033 NSC119875 approved resistant cell line (RPMI2650)
hsa-miR-744-5p Sunitinib 5329102 NSC750690 approved resistant tissue (CardA)
hsa-miR-744-5p Gemcitabine 60750 NSC613327 approved resistant cell line (MDA-231)
hsa-miR-744-5p Paclitaxel 36314 NSC125973 approved sensitive cell line (PC3PR20)
hsa-miR-744-5p Cisplatin 5460033 NSC119875 approved sensitive cell line (A549)
hsa-miR-744-5p Gemcitabine 60750 NSC613327 approved resistant cell line (PANC-1) (1500 ng/ml)
hsa-miR-744-5p Gemcitabine 60750 NSC613327 approved resistant cell line (Panc1-GR4)
hsa-miR-744-5p Ceritinib 57379345 NSC776422 approved resistant cell line (H3122)
hsa-miR-744-5p Cisplatin 5460033 NSC119875 approved sensitive cell line (H23)

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