pre-miRNA Information
pre-miRNA hsa-mir-744   
Genomic Coordinates chr17: 12081899 - 12081996
Synonyms MIRN744, hsa-mir-744, MIR744
Description Homo sapiens miR-744 stem-loop
Comment This sequence was identified as a miRNA candidate by Berezikov et al. using RAKE and MPSS techniques .
RNA Secondary Structure
Associated Diseases

Mature miRNA Information
Mature miRNA hsa-miR-744-5p
Sequence 11| UGCGGGGCUAGGGCUAACAGCA |32
Evidence Experimental
Experiments Cloned
DRVs in miRNA
Mutant ID Mutant Position Mutant Source
COSN23015028 1 COSMIC
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs557969425 1 dbSNP
rs748252260 4 dbSNP
rs1470408501 7 dbSNP
rs1178657616 10 dbSNP
Putative Targets

miRNA Expression profile
Human miRNA Tissue Atlas
miRNAs in Extracellular Vesicles
Circulating MicroRNA Expression Profiling
Biomarker Information
Biomarker ID Name Type Discovered From Mode Level Source Testing Methods
B6B8SM miR-744-5p Safety Biomarker (SAF) Clinical/Experimental Data Expression Increase Urine Real-time polymerase chain reaction
Gene Information
Gene Symbol RAI1   
Synonyms SMCR, SMS
Description retinoic acid induced 1
Transcript NM_030665   
Expression
Putative miRNA Targets on RAI1
3'UTR of RAI1
(miRNA target sites are highlighted)
>RAI1|NM_030665|3'UTR
   1 TAATCCACCCCAACGGCCGGAGGAGCCGCCGGAGCCCGCCTGCCCGCCCGCCGCCGAAGGAGAGGAGCCGCCTGCGCAGC
  81 CCCCGGGCCTTTGAGCTGCTCCCAGCGCTGGTCCAGAGCCGATCCTTGATCCGGGTCCCGGATCGTGGATCCGGCCGCCT
 161 AGGGCTCAGACTTGCGGCCCCGGGTTGGGAGGAAAACCCGTTCCGGAGCCGCCTGCTCCCGGAACCGGACGGCACAGGGC
 241 GTTCTTGCCCACCCCAGGGGCCAGGCTTGCGGAGGGGGAGCCCGCGGAGCGGCCAGACTCCCCGGGGCGCTCAGCCTCCG
 321 GCGAGGGTGGGAGACGGCTTTGTCCTGGGGACACTTTCCCTCTGGAATCTCAAGACGACGTGGCACACATTCCACGTGGG
 401 TGCTGCCGCCACCCCAGTCGGTCGTGGCGTGCAGCTGGGAGCCCTGGGCTTGGGGGTGGGGGTCGAAACAGTACTGGAAG
 481 AGGCGGAGGGCGGCTCCTAGCTCCGTGGACTAGGCGGGGGAGAAAGGAAGCCTTTCTGAGAGCGGGCTAGGCCGGCACTG
 561 GAGAGGCCGGAGCCTTTGGAACAAACCGTGCGGAACGCGTCCAGGGGCCTTCCCGCCCAGCCTTTGCCAGATCTCTCGTG
 641 CGGTTCGGGCAAAGCCGGGGTAGACCTGGGCTATGCTCAGTTAGGGGTTGCGGGATCCCCGAGTGTGGGCGGGACTGGGA
 721 CACCCTTTGGCCTCTGTTTGTCCCCTTTCCAGTCCTCCACCCCACCCCTGGAGCCCAGCCTGGGAGCGCAAAACCCAAGA
 801 AGCGGCCAGAACGCACCTCCGGCTCCGGCGGACGCGCGACCGTTGTGCACCACCAGGGACCGCCGCGCCTACTCTGCACG
 881 GGAGCAGGGACAGCGCTAGATTTCGTGTACAAAACCTGTGTACCCCTCTATATATATGTTACATAGAATGTATATATGTT
 961 GGGAACATGCTCGCTTCTCCCGTGTGTCGCCGCCGTGCGTCGTGCGCCCGCAACAGAGCCCCAACCGGGCCTTTGCCGGG
1041 TAAGGGGCTACCGCGACGCCACTTGTCCACGCAGCCACCACCGGCCCGGGCCAGTCCCTGCCAGTCCGTCCGCCTGTCCG
1121 TCCGTGTCCTCAGCTCTGTCCACGCTTCGATAGGCCTGACGCAGCCCCCAGCCCAGGGCCGCCCTAGCAACTTCCTGTAC
1201 ATATGACTGTAAAATGGTAAACGTGTGTATTATATCTGGCCTCGTTATATAGTGTATATATATGTATACATATACATATA
1281 TATAATATATATGAAGACTGTAAATGTTAAGACGACTAGTGTTCTTATTAGTATATTGCTTCACACTGAAGATTGTGTGT
1361 ATCGAGCTGTTTCTAAAAGATGTTTATTTTCCTTAAGAGTAAAAAACAGTCATTGCATTCAGAAAAAAAAAAAAAAAAAA
1441 GTCAATAAAGATACAACGATTGTTTTGGAAAAAAAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' acgacAAUCGGGA--UCGGGGCgu 5'
               | || |:|  :||||||  
Target 5' agggcTCAGACTTGCGGCCCCGgg 3'
161 - 184 131.00 -16.50
2
miRNA  3' acgacaaUCG-GGAUCGGGGCGu 5'
                 :|| ||||||:|||: 
Target 5' ggagggcGGCTCCTAGCTCCGTg 3'
485 - 507 131.00 -23.40
3
miRNA  3' acgACAAUCGGGAUCGGGGCGu 5'
             | |||  :||:|||:||: 
Target 5' gtgTATTATATCTGGCCTCGTt 3'
1225 - 1246 131.00 -17.30
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN25990310 20 COSMIC
COSN16130002 53 COSMIC
COSN26441740 133 COSMIC
COSN8832585 420 COSMIC
COSN25269930 545 COSMIC
COSM7717056 772 COSMIC
COSM8960406 782 COSMIC
COSM5784662 800 COSMIC
COSM8908517 800 COSMIC
COSM9809954 805 COSMIC
COSM7192311 810 COSMIC
COSM8495443 810 COSMIC
COSM5548778 830 COSMIC
COSM9004221 834 COSMIC
COSM2740286 839 COSMIC
COSM8959442 863 COSMIC
COSM5516758 866 COSMIC
COSM9004685 867 COSMIC
COSM7440083 881 COSMIC
COSN26572385 951 COSMIC
COSN30673871 983 COSMIC
COSN31579355 999 COSMIC
COSN26554675 1000 COSMIC
COSN26637803 1011 COSMIC
COSN25907822 1028 COSMIC
COSN25807753 1085 COSMIC
COSN31521841 1106 COSMIC
COSN31561698 1111 COSMIC
COSN31779202 1114 COSMIC
COSN31539917 1149 COSMIC
COSN31489782 1161 COSMIC
COSN31535754 1165 COSMIC
COSN31591560 1237 COSMIC
COSN1714750 1262 COSMIC
COSN31556881 1285 COSMIC
COSN31522890 1296 COSMIC
COSN1193686 1315 COSMIC
COSN26161598 1366 COSMIC
COSN24967065 1407 COSMIC
COSN31546478 1414 COSMIC
COSN28852093 1423 COSMIC
COSN31782877 1440 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs1337881858 2 dbSNP
rs1231924384 7 dbSNP
rs1329947776 11 dbSNP
rs1231561691 13 dbSNP
rs767107315 17 dbSNP
rs948181872 18 dbSNP
rs1345987196 19 dbSNP
rs199817588 20 dbSNP
rs1409633308 21 dbSNP
rs1348202138 23 dbSNP
rs752174617 27 dbSNP
rs757738920 28 dbSNP
rs1044595743 30 dbSNP
rs1391448373 33 dbSNP
rs1389467265 36 dbSNP
rs779287545 39 dbSNP
rs1251179379 40 dbSNP
rs1439294802 42 dbSNP
rs1196486103 45 dbSNP
rs1462900119 48 dbSNP
rs1006904320 50 dbSNP
rs1158098230 51 dbSNP
rs1454437658 53 dbSNP
rs905704649 57 dbSNP
rs34693238 59 dbSNP
rs1002752702 63 dbSNP
rs1184323945 68 dbSNP
rs1438463865 74 dbSNP
rs1266686695 78 dbSNP
rs1211924602 85 dbSNP
rs1337532304 86 dbSNP
rs1033476254 87 dbSNP
rs1183994844 90 dbSNP
rs957480581 101 dbSNP
rs1280918514 104 dbSNP
rs1239229894 111 dbSNP
rs1330165878 112 dbSNP
rs989718323 116 dbSNP
rs1418339250 121 dbSNP
rs1156463565 126 dbSNP
rs974162674 126 dbSNP
rs1020780606 133 dbSNP
rs1009937033 135 dbSNP
rs1158937337 136 dbSNP
rs966589252 138 dbSNP
rs982018777 146 dbSNP
rs1021357832 147 dbSNP
rs927904490 154 dbSNP
rs1254157771 157 dbSNP
rs529752687 160 dbSNP
rs543167667 175 dbSNP
rs563265354 176 dbSNP
rs532005208 179 dbSNP
rs1343805506 181 dbSNP
rs1300860145 184 dbSNP
rs974525269 185 dbSNP
rs990502557 188 dbSNP
rs909619102 197 dbSNP
rs1296777841 198 dbSNP
rs941152097 199 dbSNP
rs1428475610 204 dbSNP
rs1346915411 205 dbSNP
rs1432167064 210 dbSNP
rs1037189372 212 dbSNP
rs918779952 214 dbSNP
rs552035217 217 dbSNP
rs565680728 225 dbSNP
rs1401740002 231 dbSNP
rs1172066576 232 dbSNP
rs1390069177 236 dbSNP
rs1455636894 239 dbSNP
rs1051317047 241 dbSNP
rs528269406 242 dbSNP
rs1188019050 243 dbSNP
rs1474686820 245 dbSNP
rs1245263522 249 dbSNP
rs1289688784 250 dbSNP
rs987674251 254 dbSNP
rs1216921244 258 dbSNP
rs1007264819 259 dbSNP
rs1212661127 266 dbSNP
rs548320882 276 dbSNP
rs1273213420 279 dbSNP
rs998996130 280 dbSNP
rs1054502739 282 dbSNP
rs146819296 283 dbSNP
rs1480167711 284 dbSNP
rs973353117 285 dbSNP
rs1175291701 288 dbSNP
rs1446994278 297 dbSNP
rs1353399171 299 dbSNP
rs536718095 309 dbSNP
rs564831128 317 dbSNP
rs1376318825 320 dbSNP
rs948101269 327 dbSNP
rs1045158591 332 dbSNP
rs1444873717 335 dbSNP
rs1187679503 338 dbSNP
rs1472674218 346 dbSNP
rs927118462 354 dbSNP
rs1382840682 356 dbSNP
rs550030101 358 dbSNP
rs1057060212 361 dbSNP
rs768078281 363 dbSNP
rs1250664014 365 dbSNP
rs1171699131 366 dbSNP
rs1354502026 368 dbSNP
rs1273622593 370 dbSNP
rs1227606603 372 dbSNP
rs1460742681 374 dbSNP
rs570044205 378 dbSNP
rs1356304507 387 dbSNP
rs891742479 389 dbSNP
rs1440097356 390 dbSNP
rs1304973329 398 dbSNP
rs34210440 398 dbSNP
rs1010169319 407 dbSNP
rs773215080 414 dbSNP
rs1034867466 417 dbSNP
rs1475765132 418 dbSNP
rs1407021814 428 dbSNP
rs1452184513 430 dbSNP
rs959356179 439 dbSNP
rs1043080002 442 dbSNP
rs539070101 443 dbSNP
rs990881967 444 dbSNP
rs1313260089 445 dbSNP
rs909575721 453 dbSNP
rs962754746 454 dbSNP
rs1275018643 457 dbSNP
rs1306561323 458 dbSNP
rs1328289976 458 dbSNP
rs1215281196 462 dbSNP
rs753973733 470 dbSNP
rs114433624 478 dbSNP
rs1202102158 485 dbSNP
rs1028775446 490 dbSNP
rs954862488 491 dbSNP
rs918352623 493 dbSNP
rs934112631 494 dbSNP
rs1462286678 495 dbSNP
rs1363516603 497 dbSNP
rs1157389348 498 dbSNP
rs1009042385 502 dbSNP
rs1420450741 504 dbSNP
rs1257541477 509 dbSNP
rs1461651465 510 dbSNP
rs572730279 520 dbSNP
rs962241005 521 dbSNP
rs1254801445 523 dbSNP
rs867145257 528 dbSNP
rs1240935164 531 dbSNP
rs773819051 533 dbSNP
rs1464393356 544 dbSNP
rs535015443 547 dbSNP
rs1186616337 548 dbSNP
rs1419352837 551 dbSNP
rs1427261535 554 dbSNP
rs969455855 555 dbSNP
rs1430402832 560 dbSNP
rs943001295 561 dbSNP
rs1308035788 562 dbSNP
rs1054851835 566 dbSNP
rs981257841 567 dbSNP
rs564548872 570 dbSNP
rs1305723868 571 dbSNP
rs1010214320 573 dbSNP
rs938478398 576 dbSNP
rs1041757372 580 dbSNP
rs1287443665 589 dbSNP
rs1455713404 592 dbSNP
rs1345395080 593 dbSNP
rs574953732 598 dbSNP
rs913076820 600 dbSNP
rs1003326716 603 dbSNP
rs543481441 605 dbSNP
rs1043016148 607 dbSNP
rs1427803223 612 dbSNP
rs1034892386 615 dbSNP
rs904177595 616 dbSNP
rs959536482 620 dbSNP
rs1212727012 623 dbSNP
rs995884678 625 dbSNP
rs1012187373 627 dbSNP
rs760727327 630 dbSNP
rs1210348784 632 dbSNP
rs1323951949 636 dbSNP
rs1222706933 638 dbSNP
rs571733121 639 dbSNP
rs890179588 642 dbSNP
rs563270263 643 dbSNP
rs1448382398 647 dbSNP
rs972399205 648 dbSNP
rs1384263130 650 dbSNP
rs374887212 657 dbSNP
rs962189658 660 dbSNP
rs1301522232 662 dbSNP
rs1376924383 667 dbSNP
rs1173676440 669 dbSNP
rs576418511 674 dbSNP
rs757546619 679 dbSNP
rs200249502 687 dbSNP
rs918300252 689 dbSNP
rs955148096 692 dbSNP
rs1256467343 699 dbSNP
rs1480289457 701 dbSNP
rs754026580 707 dbSNP
rs545442390 716 dbSNP
rs911424280 720 dbSNP
rs1201088745 722 dbSNP
rs1338890183 724 dbSNP
rs1250123692 726 dbSNP
rs942928652 732 dbSNP
rs746171281 733 dbSNP
rs980822766 735 dbSNP
rs1293015436 736 dbSNP
rs990396638 742 dbSNP
rs758820067 744 dbSNP
rs542283173 745 dbSNP
rs1282498584 749 dbSNP
rs1446177662 752 dbSNP
rs1385389961 754 dbSNP
rs1323329552 755 dbSNP
rs878885443 757 dbSNP
rs1239008454 760 dbSNP
rs747272504 762 dbSNP
rs1236769344 764 dbSNP
rs1295734344 765 dbSNP
rs140957246 766 dbSNP
rs907287916 768 dbSNP
rs1251747272 769 dbSNP
rs1341401879 772 dbSNP
rs1458422702 774 dbSNP
rs781293447 776 dbSNP
rs1208048968 783 dbSNP
rs748181358 786 dbSNP
rs988223923 787 dbSNP
rs1468780578 788 dbSNP
rs913065572 789 dbSNP
rs1245840528 798 dbSNP
rs1448309151 799 dbSNP
rs938794707 802 dbSNP
rs1375231977 804 dbSNP
rs979073178 805 dbSNP
rs548205719 806 dbSNP
rs1163260866 808 dbSNP
rs1335229794 810 dbSNP
rs1395638243 810 dbSNP
rs1458577310 811 dbSNP
rs1273154916 817 dbSNP
rs1377655706 818 dbSNP
rs1337486327 819 dbSNP
rs1443590914 820 dbSNP
rs1318734505 821 dbSNP
rs1364733984 822 dbSNP
rs1234026818 823 dbSNP
rs1285157716 824 dbSNP
rs1382789630 825 dbSNP
rs759850736 826 dbSNP
rs1320066019 827 dbSNP
rs1346271948 828 dbSNP
rs1242479286 830 dbSNP
rs1413410532 834 dbSNP
rs1056681227 835 dbSNP
rs1333639056 836 dbSNP
rs1272523622 837 dbSNP
rs925915087 838 dbSNP
rs561894887 839 dbSNP
rs1462816066 842 dbSNP
rs764890641 843 dbSNP
rs1265780759 845 dbSNP
rs1157796037 846 dbSNP
rs1464174154 848 dbSNP
rs773083224 849 dbSNP
rs1263219234 854 dbSNP
rs1362317404 856 dbSNP
rs201177542 859 dbSNP
rs1440454368 860 dbSNP
rs1187391865 861 dbSNP
rs73981074 865 dbSNP
rs770892580 866 dbSNP
rs1016817096 868 dbSNP
rs1388437267 871 dbSNP
rs897990782 873 dbSNP
rs898417830 875 dbSNP
rs774129267 878 dbSNP
rs759219352 881 dbSNP
rs767103603 885 dbSNP
rs993830647 886 dbSNP
rs1280976553 887 dbSNP
rs1292556210 889 dbSNP
rs1025349886 892 dbSNP
rs1234845748 895 dbSNP
rs1286214835 905 dbSNP
rs1316195293 908 dbSNP
rs955095973 910 dbSNP
rs752181202 911 dbSNP
rs1481964095 915 dbSNP
rs986592118 916 dbSNP
rs1209529514 917 dbSNP
rs1473274298 921 dbSNP
rs1317327216 922 dbSNP
rs1258756309 923 dbSNP
rs1383046254 924 dbSNP
rs1362743608 925 dbSNP
rs1476464225 927 dbSNP
rs1180728856 931 dbSNP
rs1028304652 936 dbSNP
rs1411648959 937 dbSNP
rs1191848582 938 dbSNP
rs760113790 939 dbSNP
rs1018459821 944 dbSNP
rs1420103488 948 dbSNP
rs1455930845 950 dbSNP
rs964217997 953 dbSNP
rs905423296 955 dbSNP
rs1445692794 962 dbSNP
rs1002883759 972 dbSNP
rs765313154 973 dbSNP
rs914792333 974 dbSNP
rs1034976781 980 dbSNP
rs946334452 983 dbSNP
rs977378594 985 dbSNP
rs1235899774 990 dbSNP
rs1368179860 991 dbSNP
rs1220882784 993 dbSNP
rs1269576902 1000 dbSNP
rs928661403 1006 dbSNP
rs1438712156 1013 dbSNP
rs938699414 1015 dbSNP
rs1298595019 1019 dbSNP
rs1055854858 1020 dbSNP
rs967597350 1021 dbSNP
rs1446674888 1025 dbSNP
rs1436714682 1027 dbSNP
rs894558467 1031 dbSNP
rs530844746 1038 dbSNP
rs925792247 1038 dbSNP
rs1384671063 1049 dbSNP
rs550233963 1058 dbSNP
rs1310767297 1063 dbSNP
rs898408383 1071 dbSNP
rs1212382334 1073 dbSNP
rs1312327888 1075 dbSNP
rs911557134 1083 dbSNP
rs1212673407 1084 dbSNP
rs1341412306 1088 dbSNP
rs1161559411 1089 dbSNP
rs994114365 1094 dbSNP
rs1278556719 1098 dbSNP
rs1232494271 1099 dbSNP
rs1355035009 1100 dbSNP
rs944410584 1101 dbSNP
rs920000802 1104 dbSNP
rs1359749042 1109 dbSNP
rs1410271754 1113 dbSNP
rs1408664247 1114 dbSNP
rs1422314520 1115 dbSNP
rs1171798584 1116 dbSNP
rs1475115260 1120 dbSNP
rs1025297407 1121 dbSNP
rs879207307 1124 dbSNP
rs1008323697 1128 dbSNP
rs1201857628 1135 dbSNP
rs1315370943 1140 dbSNP
rs1381367242 1141 dbSNP
rs1258686329 1142 dbSNP
rs1243179225 1145 dbSNP
rs1332495044 1149 dbSNP
rs1272383861 1150 dbSNP
rs1294906584 1152 dbSNP
rs1230183434 1153 dbSNP
rs1380196888 1159 dbSNP
rs770858828 1161 dbSNP
rs905360229 1162 dbSNP
rs1002455273 1163 dbSNP
rs1403060249 1166 dbSNP
rs1332699555 1171 dbSNP
rs138625473 1184 dbSNP
rs539137740 1186 dbSNP
rs964138980 1191 dbSNP
rs1357676922 1192 dbSNP
rs1423986823 1199 dbSNP
rs766348360 1201 dbSNP
rs1465552170 1202 dbSNP
rs1406841258 1207 dbSNP
rs1313576382 1214 dbSNP
rs148898291 1219 dbSNP
rs1011745684 1223 dbSNP
rs1021776020 1224 dbSNP
rs1212917919 1233 dbSNP
rs1416543885 1233 dbSNP
rs1035304830 1234 dbSNP
rs896473579 1244 dbSNP
rs1286428118 1245 dbSNP
rs751534268 1246 dbSNP
rs1322525063 1247 dbSNP
rs1283890012 1252 dbSNP
rs1020983976 1255 dbSNP
rs967583551 1255 dbSNP
rs1224156596 1256 dbSNP
rs759039705 1256 dbSNP
rs1308607645 1257 dbSNP
rs1310085619 1258 dbSNP
rs1233183429 1262 dbSNP
rs1379303600 1265 dbSNP
rs767025491 1265 dbSNP
rs765758533 1269 dbSNP
rs143628855 1271 dbSNP
rs1295619028 1272 dbSNP
rs1232832359 1273 dbSNP
rs953374040 1275 dbSNP
rs1344223105 1276 dbSNP
rs750881640 1276 dbSNP
rs752344306 1276 dbSNP
rs911840005 1277 dbSNP
rs758837168 1278 dbSNP
rs928901931 1278 dbSNP
rs1481141806 1280 dbSNP
rs959996753 1281 dbSNP
rs1179325283 1283 dbSNP
rs1380314314 1285 dbSNP
rs965666753 1286 dbSNP
rs1423258407 1287 dbSNP
rs971683016 1287 dbSNP
rs758730057 1294 dbSNP
rs1737962 1298 dbSNP
rs550868299 1299 dbSNP
rs1485456923 1301 dbSNP
rs1335263200 1307 dbSNP
rs779177135 1311 dbSNP
rs1305990637 1314 dbSNP
rs991901772 1317 dbSNP
rs915994704 1319 dbSNP
rs747571235 1322 dbSNP
rs930378756 1323 dbSNP
rs1049320806 1325 dbSNP
rs926801708 1325 dbSNP
rs938188040 1327 dbSNP
rs942143277 1327 dbSNP
rs1304124042 1339 dbSNP
rs1387703106 1340 dbSNP
rs1483973497 1354 dbSNP
rs780446053 1354 dbSNP
rs1361616081 1365 dbSNP
rs1287500412 1376 dbSNP
rs1401408178 1382 dbSNP
rs1056711112 1395 dbSNP
rs780654029 1395 dbSNP
rs1432385177 1401 dbSNP
rs896715727 1401 dbSNP
rs1176791185 1404 dbSNP
rs1427858352 1407 dbSNP
rs1259335883 1412 dbSNP
rs1195611852 1414 dbSNP
rs1491527167 1420 dbSNP
rs370601753 1420 dbSNP
rs1210233586 1421 dbSNP
rs1491489489 1421 dbSNP
rs373004318 1421 dbSNP
rs754405451 1421 dbSNP
rs774837774 1421 dbSNP
rs1491285770 1422 dbSNP
rs374829984 1422 dbSNP
rs1172521467 1423 dbSNP
rs1313660650 1423 dbSNP
rs1371303595 1423 dbSNP
rs1403638869 1423 dbSNP
rs1424598478 1423 dbSNP
rs1478057635 1423 dbSNP
rs1491274388 1423 dbSNP
rs1491366426 1423 dbSNP
rs1491442822 1423 dbSNP
rs34061744 1423 dbSNP
rs397718365 1423 dbSNP
rs573904022 1423 dbSNP
rs57663061 1423 dbSNP
rs796900175 1423 dbSNP
rs878861759 1423 dbSNP
rs959750807 1423 dbSNP
rs1326576226 1424 dbSNP
rs1227323539 1426 dbSNP
rs1268981051 1428 dbSNP
rs1009835066 1429 dbSNP
rs1201138647 1432 dbSNP
rs79080059 1438 dbSNP
rs397856773 1439 dbSNP
rs80057141 1440 dbSNP
rs1256770033 1441 dbSNP
rs1224538806 1443 dbSNP
rs1200898920 1444 dbSNP
rs1262689953 1446 dbSNP
rs1321683598 1447 dbSNP
rs1319120456 1453 dbSNP
rs1042357511 1456 dbSNP
rs1231017177 1457 dbSNP
rs1206903047 1458 dbSNP
rs1341921621 1458 dbSNP
rs1390362372 1463 dbSNP
rs1262503462 1468 dbSNP
rs1333357985 1470 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
     
Conditions Flp-In T-REx 293-hAGO1 cells
Location of target site 5'UTR
Original Description (Extracted from the article) ... Validation of interactions identified by CLASH suppports their reliability. ...

- Helwak A; Kudla G; Dudnakova T; Tollervey D, 2013, Cell.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1
miRNA  3' acgacaaUCGGGAUCGGGGCGu 5'
                 :||||   |||||| 
Target 5' -----aaGGCCCGCTCCCCGCg 3'
1 - 17
2
miRNA  3' acgacaaucgggaucGGGGCGU- 5'
                         ||||||  
Target 5' gtccccgggcgccgcCCCCGCCC 3'
17 - 39
Article - Helwak A; Kudla G; Dudnakova T; Tollervey D
- Cell, 2013
MicroRNAs (miRNAs) play key roles in gene regulation, but reliable bioinformatic or experimental identification of their targets remains difficult. To provide an unbiased view of human miRNA targets, we developed a technique for ligation and sequencing of miRNA-target RNA duplexes associated with human AGO1. Here, we report data sets of more than 18,000 high-confidence miRNA-mRNA interactions. The binding of most miRNAs includes the 5' seed region, but around 60% of seed interactions are noncanonical, containing bulged or mismatched nucleotides. Moreover, seed interactions are generally accompanied by specific, nonseed base pairing. 18% of miRNA-mRNA interactions involve the miRNA 3' end, with little evidence for 5' contacts, and some of these were functionally validated. Analyses of miRNA:mRNA base pairing showed that miRNA species systematically differ in their target RNA interactions, and strongly overrepresented motifs were found in the interaction sites of several miRNAs. We speculate that these affect the response of RISC to miRNA-target binding.
LinkOut: [PMID: 23622248]
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
GSE34608 Pulmonary tuberculosis and sarcoidosis -0.695 3.4e-4 -0.770 3.6e-5 20 Click to see details
GSE28544 Breast cancer 0.518 4.8e-3 0.417 2.1e-2 24 Click to see details
GSE35602 Colorectal cancer stromal tissue 0.447 1.3e-2 0.407 2.2e-2 25 Click to see details
GSE42095 Differentiated embryonic stem cells 0.42 2.3e-2 0.317 7.0e-2 23 Click to see details
GSE21687 Ependynoma primary tumors 0.229 3.4e-2 0.100 2.2e-1 64 Click to see details
GSE26953 Aortic valvular endothelial cells 0.294 8.2e-2 0.355 4.4e-2 24 Click to see details
GSE19536 Breast cancer 0.139 8.4e-2 0.109 1.4e-1 100 Click to see details
GSE19783 ER- ER- breast cancer 0.147 9.8e-2 0.124 1.4e-1 79 Click to see details
GSE15076 Monocyte-derived dendritic cells -0.447 1.1e-1 -0.567 5.6e-2 9 Click to see details
GSE38974 Chronic obstructive pulmonary disease 0.245 1.2e-1 0.243 1.2e-1 25 Click to see details
GSE17498 Multiple myeloma -0.079 3.1e-1 -0.136 2.0e-1 40 Click to see details
GSE21032 Prostate cancer 0.033 3.8e-1 0.000 5.0e-1 83 Click to see details
GSE32688 Pancreatic cancer 0.054 3.8e-1 0.197 1.4e-1 32 Click to see details
GSE38226 Liver fibrosis 0.063 3.9e-1 0.194 2.0e-1 21 Click to see details
GSE28260 Renal cortex and medulla -0.059 4.2e-1 -0.126 3.4e-1 13 Click to see details
GSE19350 CNS germ cell tumors 0.015 4.8e-1 0.154 3.2e-1 12 Click to see details
GSE19783 ER+ ER+ breast cancer 0 5.0e-1 0.194 2.1e-1 20 Click to see details
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
PRAD 0.237 0.05 0.087 0.27 50 Click to see details
UCEC 0.382 0.05 0.260 0.14 19 Click to see details
ESCA 0.503 0.06 0.318 0.17 11 Click to see details
STAD 0.266 0.07 0.133 0.23 32 Click to see details
HNSC 0.204 0.1 0.104 0.26 42 Click to see details
LUAD 0.378 0.11 0.364 0.12 12 Click to see details
KICH 0.223 0.14 0.295 0.08 25 Click to see details
THCA 0.131 0.16 0.157 0.12 59 Click to see details
PAAD -0.639 0.18 -0.800 0.1 4 Click to see details
KIRP 0.164 0.18 0.120 0.26 32 Click to see details
BRCA 0.094 0.2 0.114 0.15 84 Click to see details
LUSC 0.118 0.24 0.308 0.03 38 Click to see details
CHOL 0.184 0.32 0.317 0.2 9 Click to see details
BLCA -0.11 0.33 -0.034 0.45 18 Click to see details
PCPG -0.347 0.39 -0.500 0.33 3 Click to see details
CESC 0.23 0.43 -0.500 0.33 3 Click to see details
KIRC -0.018 0.44 -0.070 0.29 68 Click to see details
LIHC -0.012 0.47 -0.066 0.33 49 Click to see details
COAD -0.007 0.49 -0.071 0.43 8 Click to see details
COAD -0.007 0.49 -0.071 0.43 8 Click to see details
COAD -0.007 0.49 -0.071 0.43 8 Click to see details
412 hsa-miR-744-5p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT016085 ARL15 ADP ribosylation factor like GTPase 15 1 1
MIRT016086 AGPAT3 1-acylglycerol-3-phosphate O-acyltransferase 3 1 2
MIRT016087 PPTC7 PTC7 protein phosphatase homolog 2 3
MIRT016088 RASSF1 Ras association domain family member 1 1 1
MIRT016089 IER5 immediate early response 5 1 1
MIRT037383 UFC1 ubiquitin-fold modifier conjugating enzyme 1 1 1
MIRT037384 STAM2 signal transducing adaptor molecule 2 1 1
MIRT037385 SRRM2 serine/arginine repetitive matrix 2 1 1
MIRT037386 DCXR dicarbonyl and L-xylulose reductase 1 1
MIRT037387 TSPAN17 tetraspanin 17 1 1
MIRT037388 ACTB actin beta 1 1
MIRT037389 HIST1H2BC histone cluster 1 H2B family member c 1 1
MIRT037390 ATP5B ATP synthase, H+ transporting, mitochondrial F1 complex, beta polypeptide 1 1
MIRT037391 VDAC1 voltage dependent anion channel 1 1 1
MIRT037392 RNASEK ribonuclease K 1 1
MIRT037393 CDK16 cyclin dependent kinase 16 1 1
MIRT037394 ZCCHC24 zinc finger CCHC-type containing 24 1 1
MIRT037395 ARRDC2 arrestin domain containing 2 1 1
MIRT037396 SGMS1 sphingomyelin synthase 1 1 1
MIRT037397 HSPD1 heat shock protein family D (Hsp60) member 1 1 1
MIRT037398 MRPL46 mitochondrial ribosomal protein L46 1 1
MIRT037399 RHEB Ras homolog, mTORC1 binding 1 1
MIRT037400 ND1 NADH dehydrogenase, subunit 1 (complex I) 1 1
MIRT037401 TP53I13 tumor protein p53 inducible protein 13 1 1
MIRT037402 CD44 CD44 molecule (Indian blood group) 1 1
MIRT037403 USP12 ubiquitin specific peptidase 12 1 1
MIRT037404 AP2B1 adaptor related protein complex 2 beta 1 subunit 1 1
MIRT037405 RPL18A ribosomal protein L18a 1 1
MIRT037406 PPP1CA protein phosphatase 1 catalytic subunit alpha 1 1
MIRT037407 TNRC6B trinucleotide repeat containing 6B 1 1
MIRT037408 PXK PX domain containing serine/threonine kinase like 1 1
MIRT037409 TDRKH tudor and KH domain containing 1 1
MIRT037410 PRRC2A proline rich coiled-coil 2A 1 1
MIRT037411 ATP11A ATPase phospholipid transporting 11A 1 1
MIRT037412 NDE1 nudE neurodevelopment protein 1 1 1
MIRT037413 STK16 serine/threonine kinase 16 1 1
MIRT037414 PSMB2 proteasome subunit beta 2 1 1
MIRT037415 EPN1 epsin 1 1 1
MIRT037416 EN2 engrailed homeobox 2 1 1
MIRT037417 LARP1 La ribonucleoprotein domain family member 1 1 1
MIRT037418 SRCAP Snf2 related CREBBP activator protein 1 1
MIRT037419 SMARCD1 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1 1 1
MIRT037420 AP2A2 adaptor related protein complex 2 alpha 2 subunit 1 1
MIRT037421 ACTG1 actin gamma 1 1 1
MIRT037422 PIKFYVE phosphoinositide kinase, FYVE-type zinc finger containing 1 1
MIRT037423 UBE2O ubiquitin conjugating enzyme E2 O 1 1
MIRT037424 KLHL15 kelch like family member 15 1 1
MIRT037425 SECISBP2 SECIS binding protein 2 1 1
MIRT037426 KIAA0922 transmembrane 131 like 1 1
MIRT037427 PTMA prothymosin, alpha 1 1
MIRT037428 WDR45B WD repeat domain 45B 1 1
MIRT037429 ZNF282 zinc finger protein 282 1 1
MIRT037430 GART phosphoribosylglycinamide formyltransferase, phosphoribosylglycinamide synthetase, phosphoribosylaminoimidazole synthetase 1 1
MIRT037431 TNKS tankyrase 1 1
MIRT037432 NOP2 NOP2 nucleolar protein 1 1
MIRT037433 GAK cyclin G associated kinase 1 1
MIRT037434 ATP6 ATP synthase F0 subunit 6 1 1
MIRT037435 DIDO1 death inducer-obliterator 1 1 1
MIRT037436 RPL3 ribosomal protein L3 1 1
MIRT037437 AIMP2 aminoacyl tRNA synthetase complex interacting multifunctional protein 2 1 1
MIRT037438 PIGC phosphatidylinositol glycan anchor biosynthesis class C 1 1
MIRT037439 ARHGEF2 Rho/Rac guanine nucleotide exchange factor 2 1 1
MIRT037440 USP21 ubiquitin specific peptidase 21 1 1
MIRT037441 NUFIP2 NUFIP2, FMR1 interacting protein 2 1 1
MIRT037442 RPS6 ribosomal protein S6 1 1
MIRT037443 ILKAP ILK associated serine/threonine phosphatase 1 1
MIRT037444 COX1 cytochrome c oxidase subunit I 1 1
MIRT037445 VPS37C VPS37C, ESCRT-I subunit 1 1
MIRT037446 CDK12 cyclin dependent kinase 12 1 1
MIRT037447 RBM8A RNA binding motif protein 8A 1 1
MIRT037448 CKB creatine kinase B 1 1
MIRT037449 DHX57 DExH-box helicase 57 1 1
MIRT037450 DDX23 DEAD-box helicase 23 1 1
MIRT037451 ABI3 ABI family member 3 1 1
MIRT037452 GATAD2B GATA zinc finger domain containing 2B 1 1
MIRT037453 PDPK1 3-phosphoinositide dependent protein kinase 1 1 1
MIRT037454 C17orf70 Fanconi anemia core complex associated protein 100 1 1
MIRT037455 SKI SKI proto-oncogene 1 1
MIRT037456 KCTD11 potassium channel tetramerization domain containing 11 1 1
MIRT037457 GNB2L1 receptor for activated C kinase 1 1 1
MIRT037458 NCOA3 nuclear receptor coactivator 3 1 1
MIRT037459 PAK4 p21 (RAC1) activated kinase 4 2 3
MIRT037460 GDI2 GDP dissociation inhibitor 2 1 1
MIRT037461 SLC2A4RG SLC2A4 regulator 1 1
MIRT037462 SLX4 SLX4 structure-specific endonuclease subunit 1 1
MIRT037463 COPA coatomer protein complex subunit alpha 1 1
MIRT037464 GPRASP2 G protein-coupled receptor associated sorting protein 2 1 1
MIRT037465 GGA3 golgi associated, gamma adaptin ear containing, ARF binding protein 3 1 1
MIRT037466 LIMS1 LIM zinc finger domain containing 1 1 1
MIRT037467 COTL1 coactosin like F-actin binding protein 1 1 1
MIRT037468 CAPNS1 calpain small subunit 1 1 1
MIRT037469 FRZB frizzled-related protein 1 1
MIRT037470 UBQLN4 ubiquilin 4 1 1
MIRT037471 NUP153 nucleoporin 153 1 1
MIRT037472 TMEM175 transmembrane protein 175 1 1
MIRT037473 HIST1H2BD histone cluster 1 H2B family member d 1 1
MIRT037474 SREBF1 sterol regulatory element binding transcription factor 1 1 1
MIRT037475 BCL2L12 BCL2 like 12 1 1
MIRT037476 HIST2H2AA3 histone cluster 2 H2A family member a3 1 1
MIRT037477 MINK1 misshapen like kinase 1 1 1
MIRT037478 PDXK pyridoxal kinase 1 1
MIRT037479 FAM110A family with sequence similarity 110 member A 1 1
MIRT037480 ZNF598 zinc finger protein 598 1 1
MIRT037481 ILK integrin linked kinase 1 1
MIRT037482 HINT1 histidine triad nucleotide binding protein 1 1 1
MIRT037483 WBP2 WW domain binding protein 2 1 1
MIRT037484 CYTB cytochrome b 1 1
MIRT037485 SCAMP2 secretory carrier membrane protein 2 1 1
MIRT037486 TRIM33 tripartite motif containing 33 1 1
MIRT037487 SLC25A3 solute carrier family 25 member 3 1 1
MIRT037488 IRS4 insulin receptor substrate 4 1 1
MIRT037489 TSR1 TSR1, ribosome maturation factor 1 1
MIRT037490 TCOF1 treacle ribosome biogenesis factor 1 1 1
MIRT037491 ATXN2L ataxin 2 like 1 1
MIRT037492 MTOR mechanistic target of rapamycin kinase 1 1
MIRT037493 ZNF318 zinc finger protein 318 1 1
MIRT037494 HNRNPC heterogeneous nuclear ribonucleoprotein C (C1/C2) 2 3
MIRT037495 SAMD4B sterile alpha motif domain containing 4B 1 1
MIRT037496 STMN1 stathmin 1 1 1
MIRT037497 SAT1 spermidine/spermine N1-acetyltransferase 1 1 1
MIRT037498 SALL1 spalt like transcription factor 1 1 1
MIRT037499 ZSCAN18 zinc finger and SCAN domain containing 18 1 1
MIRT037500 SLC35D1 solute carrier family 35 member D1 1 1
MIRT037501 TM9SF3 transmembrane 9 superfamily member 3 1 1
MIRT037502 TIAM1 T-cell lymphoma invasion and metastasis 1 1 1
MIRT037503 CHD5 chromodomain helicase DNA binding protein 5 1 1
MIRT037504 BAG6 BCL2 associated athanogene 6 1 1
MIRT037505 MED28 mediator complex subunit 28 1 1
MIRT037506 ANKRD52 ankyrin repeat domain 52 1 1
MIRT037507 MTHFD1 methylenetetrahydrofolate dehydrogenase, cyclohydrolase and formyltetrahydrofolate synthetase 1 1 1
MIRT037508 PPDPF pancreatic progenitor cell differentiation and proliferation factor 1 1
MIRT037509 PRKACA protein kinase cAMP-activated catalytic subunit alpha 1 1
MIRT037510 HPCAL4 hippocalcin like 4 1 1
MIRT037511 ZNF256 zinc finger protein 256 1 1
MIRT037512 CGNL1 cingulin like 1 1 1
MIRT037513 TUBA1B tubulin alpha 1b 1 1
MIRT037514 LNPEP leucyl and cystinyl aminopeptidase 1 1
MIRT037515 PDE4A phosphodiesterase 4A 1 1
MIRT037516 HOXD11 homeobox D11 2 3
MIRT037517 QARS glutaminyl-tRNA synthetase 1 1
MIRT037518 G3BP1 G3BP stress granule assembly factor 1 1 1
MIRT037519 PLEKHM2 pleckstrin homology and RUN domain containing M2 1 1
MIRT037520 POLR2A RNA polymerase II subunit A 1 1
MIRT037521 KIAA1462 junctional cadherin 5 associated 1 1
MIRT037522 SF3A1 splicing factor 3a subunit 1 1 1
MIRT037523 YBX1 Y-box binding protein 1 1 1
MIRT037524 PTGES3 prostaglandin E synthase 3 1 1
MIRT037525 FOXO3 forkhead box O3 1 1
MIRT037526 ATP5G3 ATP synthase, H+ transporting, mitochondrial Fo complex subunit C3 (subunit 9) 1 1
MIRT037527 AARS alanyl-tRNA synthetase 1 1
MIRT037528 ZNF155 zinc finger protein 155 1 1
MIRT037529 NCS1 neuronal calcium sensor 1 1 1
MIRT037530 FKBP4 FK506 binding protein 4 1 1
MIRT037531 ARHGDIA Rho GDP dissociation inhibitor alpha 1 1
MIRT037532 MAPK7 mitogen-activated protein kinase 7 1 1
MIRT037533 AGPAT2 1-acylglycerol-3-phosphate O-acyltransferase 2 1 1
MIRT037534 HIST1H1E histone cluster 1 H1 family member e 1 1
MIRT037535 MLF2 myeloid leukemia factor 2 1 1
MIRT037536 EDC3 enhancer of mRNA decapping 3 1 1
MIRT037537 CHRAC1 chromatin accessibility complex 1 1 1
MIRT037538 WIPF3 WAS/WASL interacting protein family member 3 1 1
MIRT037539 COX2 cytochrome c oxidase subunit II 1 1
MIRT037540 SRSF1 serine and arginine rich splicing factor 1 1 1
MIRT037541 CTNNBIP1 catenin beta interacting protein 1 1 1
MIRT037542 RPL4 ribosomal protein L4 1 1
MIRT037543 COX3 cytochrome c oxidase III 1 1
MIRT037544 DDX54 DEAD-box helicase 54 1 1
MIRT037545 TOB2 transducer of ERBB2, 2 1 1
MIRT037546 MAN2C1 mannosidase alpha class 2C member 1 1 1
MIRT037547 SMCR7L mitochondrial elongation factor 1 1 1
MIRT037548 RPLP1 ribosomal protein lateral stalk subunit P1 1 1
MIRT037549 RAN RAN, member RAS oncogene family 1 1
MIRT037550 NONO non-POU domain containing octamer binding 1 1
MIRT037551 CYB5R3 cytochrome b5 reductase 3 1 1
MIRT037552 SRGAP1 SLIT-ROBO Rho GTPase activating protein 1 1 1
MIRT037553 COLGALT1 collagen beta(1-O)galactosyltransferase 1 1 1
MIRT037554 MGRN1 mahogunin ring finger 1 1 1
MIRT037555 ANAPC1 anaphase promoting complex subunit 1 1 1
MIRT037556 TBX1 T-box 1 1 1
MIRT037557 NXPH4 neurexophilin 4 1 1
MIRT037558 HSPA1B heat shock protein family A (Hsp70) member 1B 1 1
MIRT037559 UBE2A ubiquitin conjugating enzyme E2 A 1 1
MIRT037560 KPNB1 karyopherin subunit beta 1 1 1
MIRT037561 NDUFB10 NADH:ubiquinone oxidoreductase subunit B10 1 1
MIRT037562 SYMPK symplekin 1 1
MIRT037563 SYPL1 synaptophysin like 1 1 1
MIRT037564 LRP3 LDL receptor related protein 3 1 1
MIRT037565 DDX24 DEAD-box helicase 24 1 1
MIRT037566 WDR37 WD repeat domain 37 1 1
MIRT037567 RPS14 ribosomal protein S14 1 1
MIRT037568 FAM53C family with sequence similarity 53 member C 1 1
MIRT037569 NMT1 N-myristoyltransferase 1 1 1
MIRT037570 PAGR1 PAXIP1 associated glutamate rich protein 1 1 1
MIRT037571 AKT2 AKT serine/threonine kinase 2 1 1
MIRT037572 TMEM14C transmembrane protein 14C 1 1
MIRT037573 MEX3D mex-3 RNA binding family member D 1 1
MIRT037574 BRAF B-Raf proto-oncogene, serine/threonine kinase 1 1
MIRT037575 POLR2L RNA polymerase II subunit L 1 1
MIRT037576 SERP1 stress associated endoplasmic reticulum protein 1 1 1
MIRT037577 C8orf33 chromosome 8 open reading frame 33 1 1
MIRT037578 NR1D2 nuclear receptor subfamily 1 group D member 2 1 1
MIRT037579 POLD3 DNA polymerase delta 3, accessory subunit 1 1
MIRT037580 HMGA1 high mobility group AT-hook 1 1 1
MIRT037581 SLC35B4 solute carrier family 35 member B4 1 1
MIRT037582 PELP1 proline, glutamate and leucine rich protein 1 1 1
MIRT037583 PLEKHG2 pleckstrin homology and RhoGEF domain containing G2 1 1
MIRT037584 RPL7A ribosomal protein L7a 1 1
MIRT037585 LAIR1 leukocyte associated immunoglobulin like receptor 1 1 1
MIRT037586 RPL10 ribosomal protein L10 1 1
MIRT037587 MRPS16 mitochondrial ribosomal protein S16 1 1
MIRT037588 SRM spermidine synthase 1 1
MIRT037589 EIF3K eukaryotic translation initiation factor 3 subunit K 1 1
MIRT037590 DESI1 desumoylating isopeptidase 1 1 1
MIRT037591 BET1 Bet1 golgi vesicular membrane trafficking protein 1 1
MIRT037592 HTRA2 HtrA serine peptidase 2 1 1
MIRT037593 LARP6 La ribonucleoprotein domain family member 6 1 1
MIRT037594 NOTCH2 notch 2 1 1
MIRT037595 ADCY9 adenylate cyclase 9 1 1
MIRT037596 C6orf62 chromosome 6 open reading frame 62 1 1
MIRT037597 FBXL19 F-box and leucine rich repeat protein 19 1 1
MIRT037598 L3MBTL2 L3MBTL2, polycomb repressive complex 1 subunit 1 1
MIRT037599 TRIM28 tripartite motif containing 28 1 1
MIRT037600 LGALS3 galectin 3 1 1
MIRT037601 IGSF8 immunoglobulin superfamily member 8 1 1
MIRT037602 LIN37 lin-37 DREAM MuvB core complex component 1 1
MIRT037603 PTPRF protein tyrosine phosphatase, receptor type F 1 1
MIRT037604 MTSS1L MTSS1L, I-BAR domain containing 1 1
MIRT037605 TRMT2A tRNA methyltransferase 2 homolog A 1 1
MIRT037606 DVL1 dishevelled segment polarity protein 1 1 1
MIRT037607 ATP5S ATP synthase, H+ transporting, mitochondrial Fo complex subunit s (factor B) 1 1
MIRT037608 TOR2A torsin family 2 member A 1 1
MIRT037609 RPS6KA5 ribosomal protein S6 kinase A5 1 1
MIRT037610 SMYD4 SET and MYND domain containing 4 1 1
MIRT037611 TJAP1 tight junction associated protein 1 1 1
MIRT037612 IRAK1 interleukin 1 receptor associated kinase 1 1 1
MIRT037613 PPM1M protein phosphatase, Mg2+/Mn2+ dependent 1M 1 1
MIRT037614 EIF4A2 eukaryotic translation initiation factor 4A2 1 1
MIRT037615 GFER growth factor, augmenter of liver regeneration 1 1
MIRT037616 PKP2 plakophilin 2 1 1
MIRT037617 FARSB phenylalanyl-tRNA synthetase beta subunit 1 1
MIRT037618 OPRD1 opioid receptor delta 1 1 1
MIRT037619 CCNY cyclin Y 1 1
MIRT037620 CNOT1 CCR4-NOT transcription complex subunit 1 1 1
MIRT037621 CXCL16 C-X-C motif chemokine ligand 16 1 1
MIRT037622 CEBPA CCAAT/enhancer binding protein alpha 1 1
MIRT037623 DDX11 DEAD/H-box helicase 11 1 1
MIRT037624 URB1 URB1 ribosome biogenesis 1 homolog (S. cerevisiae) 1 1
MIRT037625 SBF1 SET binding factor 1 1 1
MIRT037626 GNB2 G protein subunit beta 2 1 1
MIRT037627 KMT2D lysine methyltransferase 2D 2 3
MIRT037628 DDX17 DEAD-box helicase 17 1 1
MIRT037629 SORBS3 sorbin and SH3 domain containing 3 1 1
MIRT037630 TAPBP TAP binding protein 1 1
MIRT037631 BCR BCR, RhoGEF and GTPase activating protein 1 1
MIRT037632 RPL18 ribosomal protein L18 1 1
MIRT037633 INTS3 integrator complex subunit 3 1 1
MIRT037634 CDC25B cell division cycle 25B 1 1
MIRT037635 LDOC1L retrotransposon Gag like 6 1 1
MIRT037636 TUB tubby bipartite transcription factor 1 1
MIRT037637 NUDT2 nudix hydrolase 2 1 1
MIRT037638 CDAN1 codanin 1 1 1
MIRT037639 MRS2 MRS2, magnesium transporter 1 1
MIRT037640 PYGB glycogen phosphorylase B 1 1
MIRT037641 LDLRAD3 low density lipoprotein receptor class A domain containing 3 1 1
MIRT037642 COL5A1 collagen type V alpha 1 chain 1 1
MIRT037643 ATF7IP activating transcription factor 7 interacting protein 1 1
MIRT037644 AGO1 argonaute 1, RISC catalytic component 1 1
MIRT037645 ZNF212 zinc finger protein 212 1 1
MIRT037646 TSC2 TSC complex subunit 2 1 1
MIRT037647 FASN fatty acid synthase 1 1
MIRT037648 NOL9 nucleolar protein 9 1 1
MIRT037649 CLUH clustered mitochondria homolog 1 1
MIRT037650 PHF8 PHD finger protein 8 1 1
MIRT037651 EIF4G1 eukaryotic translation initiation factor 4 gamma 1 1 1
MIRT037652 TRAPPC12 trafficking protein particle complex 12 1 1
MIRT037653 HOXC11 homeobox C11 1 1
MIRT037654 DGCR14 ess-2 splicing factor homolog 1 1
MIRT037655 SLC25A1 solute carrier family 25 member 1 1 1
MIRT037656 MEX3C mex-3 RNA binding family member C 1 1
MIRT037657 RAI1 retinoic acid induced 1 1 1
MIRT037658 LY6E lymphocyte antigen 6 family member E 1 1
MIRT037659 SEC16A SEC16 homolog A, endoplasmic reticulum export factor 1 1
MIRT037660 RPL37 ribosomal protein L37 1 1
MIRT037661 CNN2 calponin 2 1 1
MIRT037662 ALDH18A1 aldehyde dehydrogenase 18 family member A1 1 1
MIRT037663 POMGNT1 protein O-linked mannose N-acetylglucosaminyltransferase 1 (beta 1,2-) 1 1
MIRT037664 EIF4A1 eukaryotic translation initiation factor 4A1 1 1
MIRT037665 PIM3 Pim-3 proto-oncogene, serine/threonine kinase 1 1
MIRT037666 PTPMT1 protein tyrosine phosphatase, mitochondrial 1 1 1
MIRT037667 NCEH1 neutral cholesterol ester hydrolase 1 1 1
MIRT037668 ART5 ADP-ribosyltransferase 5 1 1
MIRT037669 MRPS2 mitochondrial ribosomal protein S2 1 1
MIRT037670 NCL nucleolin 1 1
MIRT037671 NCKAP5L NCK associated protein 5 like 1 1
MIRT037672 ZCCHC14 zinc finger CCHC-type containing 14 1 1
MIRT037673 CCDC71 coiled-coil domain containing 71 1 1
MIRT037674 SURF4 surfeit 4 1 1
MIRT037675 RPL13 ribosomal protein L13 1 1
MIRT037676 ACTN4 actinin alpha 4 1 1
MIRT037677 PA2G4 proliferation-associated 2G4 1 1
MIRT037678 MIF macrophage migration inhibitory factor 1 1
MIRT037679 UBE2N ubiquitin conjugating enzyme E2 N 1 1
MIRT037680 LYNX1 Ly6/neurotoxin 1 1 1
MIRT037681 TACC3 transforming acidic coiled-coil containing protein 3 1 1
MIRT037682 GSR glutathione-disulfide reductase 1 1
MIRT037683 GSK3A glycogen synthase kinase 3 alpha 1 1
MIRT037684 ZMYM3 zinc finger MYM-type containing 3 1 1
MIRT037685 ERP29 endoplasmic reticulum protein 29 1 1
MIRT037686 MATR3 matrin 3 1 1
MIRT037687 FANCG Fanconi anemia complementation group G 1 1
MIRT037688 FAM83G family with sequence similarity 83 member G 1 1
MIRT037689 DUSP18 dual specificity phosphatase 18 1 1
MIRT037690 MYC MYC proto-oncogene, bHLH transcription factor 3 2
MIRT037691 TSPAN7 tetraspanin 7 1 1
MIRT037692 ATMIN ATM interactor 1 1
MIRT037693 SEPT2 septin 2 1 1
MIRT037694 FOXRED2 FAD dependent oxidoreductase domain containing 2 1 1
MIRT037695 TECR trans-2,3-enoyl-CoA reductase 1 1
MIRT037696 MRPL11 mitochondrial ribosomal protein L11 1 1
MIRT037697 IP6K1 inositol hexakisphosphate kinase 1 1 1
MIRT037698 PSMD4 proteasome 26S subunit, non-ATPase 4 1 1
MIRT037699 SH3GL1 SH3 domain containing GRB2 like 1, endophilin A2 1 1
MIRT037700 CTNNB1 catenin beta 1 1 1
MIRT037701 TMEM189 transmembrane protein 189 1 1
MIRT037702 LDLR low density lipoprotein receptor 1 1
MIRT037703 OGFR opioid growth factor receptor 1 1
MIRT037704 ADAP2 ArfGAP with dual PH domains 2 1 1
MIRT037705 LIPA lipase A, lysosomal acid type 1 1
MIRT037706 SNAPC4 small nuclear RNA activating complex polypeptide 4 1 1
MIRT037707 FBN2 fibrillin 2 1 1
MIRT037708 ZNF704 zinc finger protein 704 1 1
MIRT037709 EIF3M eukaryotic translation initiation factor 3 subunit M 1 1
MIRT037710 SMC1A structural maintenance of chromosomes 1A 1 1
MIRT037711 FZR1 fizzy and cell division cycle 20 related 1 1 1
MIRT037712 NANOS1 nanos C2HC-type zinc finger 1 1 1
MIRT037713 PRR12 proline rich 12 1 1
MIRT037714 PHC2 polyhomeotic homolog 2 1 1
MIRT037715 NOP9 NOP9 nucleolar protein 1 1
MIRT037716 HM13 histocompatibility minor 13 1 1
MIRT037717 PRDX5 peroxiredoxin 5 1 1
MIRT037718 IRGQ immunity related GTPase Q 1 1
MIRT037719 TGFB1 transforming growth factor beta 1 7 2
MIRT037720 MARCH3 membrane associated ring-CH-type finger 3 1 1
MIRT037721 TBX2 T-box 2 1 1
MIRT037722 TSC22D3 TSC22 domain family member 3 1 1
MIRT037723 DUT deoxyuridine triphosphatase 1 1
MIRT037724 FAM171A2 family with sequence similarity 171 member A2 1 1
MIRT037725 FGFR1 fibroblast growth factor receptor 1 1 1
MIRT037726 FRAT1 FRAT1, WNT signaling pathway regulator 1 1
MIRT037727 PSMD11 proteasome 26S subunit, non-ATPase 11 1 1
MIRT037728 PABPC1 poly(A) binding protein cytoplasmic 1 1 1
MIRT037729 ENO1 enolase 1 1 1
MIRT037730 AP3D1 adaptor related protein complex 3 delta 1 subunit 1 1
MIRT037731 TUBA1A tubulin alpha 1a 1 1
MIRT037732 ULK3 unc-51 like kinase 3 1 1
MIRT037733 PIP5K1A phosphatidylinositol-4-phosphate 5-kinase type 1 alpha 1 1
MIRT037734 SLC25A46 solute carrier family 25 member 46 1 1
MIRT037735 MED15 mediator complex subunit 15 1 1
MIRT037736 IRF2BP1 interferon regulatory factor 2 binding protein 1 1 1
MIRT037737 UBA1 ubiquitin like modifier activating enzyme 1 1 1
MIRT037738 ATHL1 protein-glucosylgalactosylhydroxylysine glucosidase 1 1
MIRT037739 CTNNA1 catenin alpha 1 1 1
MIRT037740 ADRM1 adhesion regulating molecule 1 1 1
MIRT037741 CCDC106 coiled-coil domain containing 106 1 1
MIRT054493 EEF1A2 eukaryotic translation elongation factor 1 alpha 2 3 1
MIRT451195 PIN1 peptidylprolyl cis/trans isomerase, NIMA-interacting 1 2 2
MIRT452931 DISC1 disrupted in schizophrenia 1 2 2
MIRT455468 LYPLA2 lysophospholipase II 2 2
MIRT457068 TOR4A torsin family 4 member A 2 2
MIRT464195 VGLL4 vestigial like family member 4 2 4
MIRT483030 KHSRP KH-type splicing regulatory protein 2 4
MIRT486062 CTDNEP1 CTD nuclear envelope phosphatase 1 2 2
MIRT486120 INO80E INO80 complex subunit E 2 2
MIRT486866 DPF1 double PHD fingers 1 2 2
MIRT488343 PAX2 paired box 2 2 2
MIRT488790 POFUT2 protein O-fucosyltransferase 2 2 2
MIRT490249 MFI2 melanotransferrin 2 2
MIRT490264 HAAO 3-hydroxyanthranilate 3,4-dioxygenase 2 2
MIRT490756 SRCIN1 SRC kinase signaling inhibitor 1 2 2
MIRT492321 SETD1B SET domain containing 1B 2 2
MIRT492851 NRGN neurogranin 2 2
MIRT499604 ANKRD45 ankyrin repeat domain 45 2 2
MIRT500189 BARX1 BARX homeobox 1 2 4
MIRT516765 FAM212B family with sequence similarity 212 member B 2 4
MIRT517949 TRIM59 tripartite motif containing 59 2 2
MIRT521182 SCAF4 SR-related CTD associated factor 4 2 2
MIRT526462 OSBPL5 oxysterol binding protein like 5 2 2
MIRT535148 PLEKHG5 pleckstrin homology and RhoGEF domain containing G5 2 2
MIRT569528 AP5Z1 adaptor related protein complex 5 zeta 1 subunit 2 2
MIRT570593 NFIX nuclear factor I X 2 2
MIRT571219 F2R coagulation factor II thrombin receptor 2 2
MIRT574145 MARVELD1 MARVEL domain containing 1 2 2
MIRT608758 CACNA1A calcium voltage-gated channel subunit alpha1 A 2 2
MIRT649509 RAB17 RAB17, member RAS oncogene family 2 2
MIRT692165 RNF207 ring finger protein 207 2 2
MIRT703495 FNDC3B fibronectin type III domain containing 3B 2 2
MIRT711081 NEUROD2 neuronal differentiation 2 2 2
MIRT712090 UNC13A unc-13 homolog A 2 2
MIRT712531 CYTH2 cytohesin 2 2 2
MIRT712755 GMDS GDP-mannose 4,6-dehydratase 2 2
MIRT712893 TGFA transforming growth factor alpha 2 2
MIRT714684 PRX periaxin 2 2
MIRT714723 VPS8 VPS8, CORVET complex subunit 2 2
MIRT714814 NOB1 NIN1/PSMD8 binding protein 1 homolog 2 2
MIRT716774 C1orf229 chromosome 1 open reading frame 229 2 2
MIRT717511 HRNR hornerin 2 2
MIRT717653 THBS2 thrombospondin 2 2 2
MIRT719595 PIAS4 protein inhibitor of activated STAT 4 2 2
MIRT720525 PTGR2 prostaglandin reductase 2 2 2
MIRT724925 VPS18 VPS18, CORVET/HOPS core subunit 2 2
MIRT737146 NOS3 nitric oxide synthase 3 1 0
MIRT756003 SLC7A5 solute carrier family 7 member 5 3 1
miRNA-Drug Associations
miRNA Small Melocule FDA CID Detection Method Condition PMID Year Expression Pattern of miRNA
miR-744 Hexahydro-1,3,5-trinitro-1,3,5-triazine (RDX) NULL 8490 Microarray mouse brain 19270793 2009 down-regulated
miR-744 Tert-butyl hydroperoxide (t-BHP) NULL 6410 Microarray mouse auditory cells 20510889 2010 up-regulated
miR-744 Ursodeoxycholic acid (UDCA) approved 31401 Microarray rat Liver 20689055 2010 up-regulated
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-mir-744 Cisplatin 5460033 NSC119875 approved resistant High Gastric Cancer cell line (SGC-7901)
hsa-mir-744 Dabrafenib 44462760 NSC764134 approved resistant cell line (A375)
hsa-mir-744 Androstenedione 6128 NSC9563 sensitive cell line (MCF-7)
hsa-mir-744 Fluorouracil 3385 NSC19893 approved resistant cell line (OE19)
hsa-mir-744 Fluorouracil 3385 NSC19893 approved resistant cell line (KYSE)
hsa-mir-744 Ceritinib 57379345 NSC776422 approved resistant cell line (H3122)
hsa-mir-744 Cisplatin 5460033 NSC119875 approved resistant cell line (SGC-7901)
hsa-miR-744-5p [1,1'-binaphthalene]-2,2',3,3'-tetrol 316673 NSC245006 sensitive
hsa-miR-744-5p 4-n-[12-[(5-amino-6-chloropyrimidin-4-yl)amino]dodecyl]-6-chloropyrimidine-4,5-diamine 358989 NSC619196 sensitive
hsa-miR-744-5p 5,7-dibromo-2-[(e)-2-(4-hydroxy-3-methoxyphenyl)ethenyl]quinolin-8-ol 135460261 NSC67090 sensitive
hsa-miR-744-5p Benzyl 2-(dibenzylamino)-3-phenylpropanoate 375616 NSC655438 sensitive
hsa-miR-744-5p N'-[(Z)-[(4Z)-2-(1,3-benzodioxol-5-yl)-4-[[4-oxo-4-[2-(trifluoromethyl)anilino]butanoyl]hydrazinylidene]chromen-3-ylidene]amino]-N-[2-(trifluoromethyl)phenyl]butanediamide 6399328 NSC641210 sensitive
hsa-miR-744-5p Paullone analog 47 396411 NSC702373 sensitive
hsa-miR-744-5p Ursa-11,13(18)-dien-28-oic acid-3.beta.-ol 378695 NSC661747 sensitive
hsa-miR-744-5p Tamoxifen 2733525 NSC180973 approved resistant High Breast Cancer cell line (MCF-7, LY2)
hsa-miR-744-5p Cisplatin 5460033 NSC119875 approved resistant High Ovarian Cancer cell line (SKOV3)
hsa-miR-744-5p Carboplatin 38904 NSC241240 approved sensitive High Ovarian Cancer tissue and cell line (MDAH-2274, SKOV3)
hsa-miR-744-5p Gefitinib 123631 NSC715055 approved resistant High Lung Adenocarcinoma cell line (A549)
hsa-miR-744-5p Cisplatin 5460033 NSC119875 approved sensitive High Esophageal Squamous Cell Carcinoma cell line (KYSE410)
hsa-miR-744-5p Tamoxifen 2733525 NSC180973 approved sensitive High Breast Cancer cell line (MCF-7)
hsa-miR-744-5p Cisplatin 5460033 NSC119875 approved resistant High Non-Small Cell Lung Cancer cell line (A549)
hsa-miR-744-5p Vinorelbine 44424639 approved resistant High Breast Cancer cell line (MDA-MB-231)
hsa-miR-744-5p Epirubicin 41867 NSC256942 approved resistant High Breast Cancer cell line (MDA-MB-231)
hsa-miR-744-5p Erlotinib 176870 NSC718781 approved sensitive High Non-Small Cell Lung Cancer tissue
hsa-miR-744-5p Gefitinib 123631 NSC715055 approved sensitive High Non-Small Cell Lung Cancer tissue
hsa-miR-744-5p Sunitinib 5329102 NSC750690 approved sensitive High Renal Cell Cancer tissue
hsa-miR-744-5p Gemcitabine 60750 NSC613327 approved resistant High Pancreatic Cancer cell line (AsPC-1)
hsa-miR-744-5p Sorafenib 216239 NSC747971 approved sensitive Low Hepatocellular Carcinoma cell line (HepG2)
hsa-miR-744-5p Cisplatin 5460033 NSC119875 approved resistant High Gastric Cancer cell line (SGC-7901, BGC-823)
hsa-miR-744-5p Oxaliplatin 6857599 NSC266046 approved resistant Low Colorectal Cancer cell line (HCT-116)
hsa-miR-744-5p Bortezomib 387447 NSC681239 approved sensitive Low Multiple Myeloma tissue
hsa-miR-744-5p Cisplatin 5460033 NSC119875 approved resistant High Non-Small Cell Lung Cancer cell line (A549)
hsa-miR-744-5p Osimertinib 71496458 NSC779217 approved sensitive cell line (HCC827)
hsa-miR-744-5p Osimertinib 71496458 NSC779217 approved resistant cell line (PC9)
hsa-miR-744-5p Cisplatin 5460033 NSC119875 approved sensitive cell line (CAL-27) (cytosolic RNA)
hsa-miR-744-5p Doxorubicin 31703 NSC123127 approved sensitive cell line (HS578T)
hsa-miR-744-5p Cisplatin 5460033 NSC119875 approved resistant cell line (A549)
hsa-miR-744-5p Fluorouracil 3385 NSC19893 approved sensitive cell line (HCT15)
hsa-miR-744-5p 4-Hydroxytamoxifen+Tamoxifen sensitive cell line (LY2)
hsa-miR-744-5p Ethanol+Tamoxifen sensitive cell line (LY2)
hsa-miR-744-5p Methotrexate 126941 NSC740 approved resistant cell line (HT29)
hsa-miR-744-5p Fluorouracil 3385 NSC19893 approved resistant cell line (KM12C) (72 h)
hsa-miR-744-5p Cisplatin 5460033 NSC119875 approved resistant cell line (RPMI2650)
hsa-miR-744-5p Sunitinib 5329102 NSC750690 approved resistant tissue (CardA)
hsa-miR-744-5p Gemcitabine 60750 NSC613327 approved resistant cell line (MDA-231)
hsa-miR-744-5p Paclitaxel 36314 NSC125973 approved sensitive cell line (PC3PR20)
hsa-miR-744-5p Cisplatin 5460033 NSC119875 approved sensitive cell line (A549)
hsa-miR-744-5p Gemcitabine 60750 NSC613327 approved resistant cell line (PANC-1) (1500 ng/ml)
hsa-miR-744-5p Gemcitabine 60750 NSC613327 approved resistant cell line (Panc1-GR4)
hsa-miR-744-5p Ceritinib 57379345 NSC776422 approved resistant cell line (H3122)
hsa-miR-744-5p Cisplatin 5460033 NSC119875 approved sensitive cell line (H23)

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